genome.fa.s8608.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008608.1 Hibiscus syriacus cultivar Beakdansim tig00111564_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114760

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2642--2693	2	26.0	2	100	0	104	50	0	0	50	1.00
2891--2934	22	2.0	22	90	0	70	22	18	9	50	1.75
5230--5263	15	2.3	15	94	0	59	52	0	0	47	1.00
5229--5267	15	2.7	15	84	7	55	51	0	0	48	1.00
13216--13261	22	2.1	22	95	0	83	30	0	26	43	1.55
13293--13337	2	22.5	2	100	0	90	48	0	0	51	1.00
15685--15742	23	2.5	23	82	0	71	15	29	27	27	1.96
16080--16105	2	13.0	2	100	0	52	50	0	0	50	1.00
19564--19619	24	2.3	24	100	0	112	28	17	16	37	1.91
19854--19910	30	1.9	30	88	0	87	10	29	19	40	1.85
23949--24024	23	3.3	23	79	3	82	44	13	27	14	1.82
24287--24784	41	12.1	40	70	16	236	31	18	17	32	1.94
24297--24784	206	2.4	206	87	2	687	31	18	17	31	1.95
25206--25251	19	2.4	20	89	7	69	15	17	8	58	1.61
29598--29825	43	5.3	43	86	3	318	27	25	16	30	1.97
29598--29825	85	2.7	85	91	1	359	27	25	16	30	1.97
36916--36990	3	25.0	3	86	0	105	62	1	2	33	1.17
42034--42069	2	18.0	2	100	0	72	50	0	0	50	1.00
49218--49355	21	6.6	19	72	17	105	20	19	24	35	1.96
49208--49355	42	3.5	42	96	0	269	20	19	22	36	1.95
50081--50105	6	4.2	6	100	0	50	0	16	48	36	1.46
50195--50359	21	8.0	21	70	12	117	36	21	18	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50202--50378	42	4.3	41	85	6	225	37	21	18	22	1.94
61723--61749	2	13.5	2	100	0	54	51	0	0	48	1.00
62844--62870	2	13.5	2	100	0	54	51	0	0	48	1.00
65618--65699	33	2.5	33	82	13	114	35	2	6	56	1.37
67332--67385	23	2.3	23	96	0	99	46	12	22	18	1.83
74934--75016	43	1.9	43	97	0	157	44	9	18	27	1.80
81267--81317	18	2.9	17	91	5	84	17	47	19	15	1.83
81295--81323	13	2.3	13	94	5	51	17	44	24	13	1.85
81345--81411	29	2.3	29	89	0	98	20	10	28	40	1.86
81374--81427	29	1.9	27	81	7	63	29	9	24	37	1.86
86344--86445	51	2.0	51	98	0	195	31	16	23	28	1.96
88541--88595	9	5.6	10	82	8	60	16	21	29	32	1.95
88613--88637	13	1.9	13	100	0	50	16	48	16	20	1.82
88598--88635	18	2.1	18	100	0	76	15	50	18	15	1.79
88663--88745	29	2.9	29	78	3	80	26	8	24	40	1.83
94340--94383	20	2.2	19	84	15	54	63	4	4	27	1.33
108797--108844	25	1.9	25	87	8	71	14	10	4	70	1.29

Tables:   1

The End!