genome.fa.s861.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000861.1 Hibiscus syriacus cultivar Beakdansim tig00001667_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  197037

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16174--16240	24	2.8	24	88	0	98	14	46	13	25	1.82
18612--18636	11	2.3	11	100	0	50	28	0	16	56	1.41
19191--19251	30	2.0	30	100	0	122	49	19	18	13	1.79
19182--19243	30	2.3	25	71	23	61	53	19	14	12	1.73
34695--34777	29	2.8	29	90	1	130	42	10	14	32	1.80
39034--39071	19	2.0	20	90	10	62	15	36	26	21	1.93
39452--39534	29	2.8	29	90	1	130	42	10	14	32	1.80
42464--42493	12	2.6	12	94	5	53	56	0	0	43	0.99
42462--42495	12	2.6	13	86	13	52	55	0	0	44	0.99
44059--44093	3	11.7	3	100	0	70	68	0	0	31	0.90
51387--51418	3	10.7	3	93	0	55	28	0	3	68	1.04
54120--54154	17	2.1	16	89	5	52	77	0	8	14	0.99
59319--59534	105	2.1	104	84	0	279	40	22	13	24	1.89
63162--63209	19	2.5	19	100	0	96	25	22	0	52	1.48
64378--64584	105	2.0	105	81	0	243	38	21	15	24	1.92
69136--69173	19	2.1	18	95	5	67	57	0	0	42	0.98
69143--69216	12	5.9	12	76	16	53	48	0	0	51	1.00
69152--69220	2	39.0	2	71	23	57	47	0	0	52	1.00
69389--69491	36	2.9	36	100	0	206	16	19	19	44	1.87
69556--70079	90	5.8	90	90	0	805	23	22	14	38	1.92
69600--70020	44	9.4	44	64	15	173	22	23	14	39	1.91
74069--74099	15	2.1	15	100	0	62	45	6	32	16	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76769--76802	18	1.9	17	88	5	50	47	5	0	47	1.26
76901--76947	2	23.5	2	100	0	94	51	0	0	48	1.00
78191--78249	6	9.3	6	76	9	55	52	0	0	47	1.00
78186--78247	20	3.2	18	75	18	61	53	0	0	46	1.00
78185--78254	12	5.4	12	78	11	68	54	0	0	45	0.99
78603--78639	19	1.9	19	88	0	56	18	24	5	51	1.67
79804--79845	20	2.0	21	90	4	68	40	9	14	35	1.78
84332--84373	20	2.0	21	90	4	68	40	9	14	35	1.78
104152--104177	3	8.7	3	100	0	52	69	0	0	30	0.89
105771--105823	21	2.5	21	81	6	72	20	26	18	33	1.96
105813--105864	21	2.5	21	81	3	61	38	19	25	17	1.93
105850--106027	40	4.4	41	80	4	130	32	24	18	25	1.97
105853--106002	20	7.4	20	82	7	142	28	26	18	26	1.98
105895--106002	40	2.7	40	91	2	164	23	26	20	29	1.99
105909--106006	20	4.9	20	96	0	160	23	26	20	29	1.99
106161--106194	12	2.9	12	86	4	52	17	41	5	35	1.74
106749--106802	24	2.2	24	86	0	72	24	16	18	40	1.90
106977--107001	12	2.1	12	100	0	50	72	0	28	0	0.86
109257--109364	20	5.4	20	97	0	198	35	25	23	16	1.95
109531--109567	14	2.6	14	86	0	56	48	21	0	29	1.50
111434--111483	20	2.5	20	90	0	73	42	24	20	14	1.88
111470--111528	19	3.4	19	73	22	74	47	20	18	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111486--111544	14	3.9	14	76	20	64	49	23	16	10	1.77
111470--111549	33	2.4	33	97	0	151	47	22	18	11	1.80
111556--111614	19	3.1	19	85	2	73	16	23	20	38	1.92
111571--111614	20	2.2	20	88	4	63	18	25	20	36	1.95
112166--112213	18	2.7	18	93	0	87	14	12	45	27	1.81
113545--113582	20	1.9	20	88	0	58	36	21	18	23	1.95
113821--113869	22	2.3	21	83	10	64	26	14	38	20	1.91
113827--113870	22	2.0	22	90	0	70	25	15	38	20	1.92
114058--114171	20	5.7	20	81	6	131	22	20	27	29	1.98
114038--114173	41	3.3	41	80	6	159	22	19	25	31	1.98
114058--114193	41	3.3	41	82	3	123	21	21	25	31	1.98
125110--125234	31	4.0	31	93	2	198	37	22	19	20	1.94
125517--125541	13	1.9	13	100	0	50	28	16	0	56	1.41
126115--126159	21	2.1	21	87	0	63	15	24	28	31	1.96
129575--129699	31	4.0	31	92	2	198	38	23	18	20	1.93
130522--130566	21	2.1	21	87	0	63	15	24	28	31	1.96
134124--134165	21	2.0	21	90	9	68	14	26	16	42	1.86
134129--134175	21	2.2	21	85	7	60	19	25	19	36	1.95
134165--134216	21	2.5	21	81	3	61	38	19	25	17	1.93
134206--134338	20	6.7	20	91	0	176	26	26	20	27	1.99
137591--137658	20	3.4	20	97	0	127	35	26	22	16	1.94
139707--139779	20	3.7	20	83	3	94	41	23	20	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139786--139882	19	5.6	19	71	22	88	12	18	21	47	1.81
139808--139866	14	3.9	14	76	20	64	10	16	23	49	1.77
139791--139882	33	2.8	33	96	0	166	11	17	21	48	1.79
140462--140509	18	2.7	18	93	0	87	14	12	45	27	1.81
141845--141889	20	2.2	20	84	0	63	37	22	20	20	1.94
142363--142476	20	5.7	20	79	6	122	22	20	26	30	1.98
142353--142480	41	3.1	41	81	6	143	22	17	25	34	1.96
142363--142497	41	3.3	41	81	3	130	21	21	25	31	1.98
142507--142559	21	2.5	22	81	6	74	33	18	26	20	1.96
150453--150672	108	2.0	107	81	6	257	19	13	25	41	1.88
152967--153020	29	2.0	26	82	10	63	59	5	5	29	1.43
160739--160768	12	2.6	12	94	5	53	56	0	0	43	0.99
160737--160770	12	2.6	13	86	13	52	55	0	0	44	0.99
164869--164986	24	4.9	24	87	4	166	26	15	18	39	1.90
165111--165185	35	2.1	35	90	0	114	22	12	32	33	1.91
167364--167478	21	5.5	21	83	6	144	27	22	23	26	2.00
167380--167519	62	2.3	62	79	9	144	28	22	21	27	1.99
167488--167555	21	3.2	21	91	0	100	30	25	19	25	1.98
167638--167670	6	5.5	6	92	0	57	33	48	15	3	1.60
168170--168201	6	5.5	6	96	3	57	0	15	53	31	1.43
168322--168420	21	4.8	21	82	13	116	24	21	24	30	1.99
168319--168432	21	5.5	21	80	6	106	28	21	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177542--177568	2	13.5	2	100	0	54	48	0	0	51	1.00
178187--178348	64	2.5	64	82	9	170	25	21	19	33	1.97
180161--180195	12	2.9	12	91	0	52	37	25	5	31	1.80
180508--180684	64	2.8	64	83	5	198	25	19	22	32	1.97
180571--180732	64	2.5	64	84	7	188	27	22	17	32	1.97
186857--186904	15	3.2	15	84	0	60	29	29	20	20	1.98
186862--186905	15	2.9	15	86	0	61	27	27	22	22	1.99
187049--187083	12	2.9	12	91	0	52	37	25	5	31	1.80
187453--187504	19	2.7	19	100	0	104	23	30	17	28	1.97
187472--187631	64	2.5	64	85	6	200	26	22	20	31	1.98
191614--191647	6	5.7	6	96	0	59	38	17	32	11	1.86
192023--192075	28	1.9	28	85	11	74	13	26	24	35	1.92
192443--192473	13	2.4	13	100	0	62	0	9	12	77	0.99
196800--196846	25	1.9	25	95	4	87	17	38	12	31	1.87

Tables:   1

The End!