genome.fa.s8611.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008611.1 Hibiscus syriacus cultivar Beakdansim tig00111567_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95598

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--436	222	2.0	221	92	4	723	45	7	7	39	1.62
500--545	20	2.3	19	89	10	74	54	10	17	17	1.70
666--712	20	2.4	19	82	10	67	53	10	17	19	1.72
675--717	20	2.3	19	88	11	63	51	11	16	20	1.75
2928--2992	21	3.1	21	80	6	69	40	15	29	15	1.88
3026--3091	33	2.0	33	90	0	105	28	0	48	22	1.51
4879--4926	19	2.6	19	93	3	80	31	2	10	56	1.45
6797--6876	6	13.3	6	77	0	61	37	7	35	20	1.81
6812--6880	3	23.0	3	74	0	57	36	5	34	23	1.79
6800--6864	30	2.2	30	91	0	103	35	9	35	20	1.84
6797--6880	12	7.0	12	80	0	69	36	7	34	21	1.81
6797--6880	18	4.7	18	78	0	87	36	7	34	21	1.81
8346--8959	183	3.4	183	93	3	1029	35	14	16	33	1.89
11435--11485	23	2.2	23	89	6	77	35	1	19	43	1.63
11907--11943	18	2.1	18	89	0	56	32	5	10	51	1.60
11899--11945	24	2.0	24	86	0	67	34	4	14	46	1.64
12701--12773	23	3.2	23	88	0	101	34	4	21	39	1.73
14615--14675	2	30.5	2	100	0	122	49	0	0	50	1.00
16242--16354	33	3.4	33	76	4	111	39	25	29	5	1.78
17473--17632	87	1.8	86	82	4	205	29	13	25	31	1.94
19296--19328	17	1.9	17	93	0	57	63	3	0	33	1.10
31936--32043	54	2.0	54	94	0	189	35	25	1	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38151--38187	18	2.1	18	85	14	51	43	8	0	48	1.32
40367--40391	13	1.9	13	100	0	50	48	0	8	44	1.32
40631--40671	19	2.2	18	95	4	73	63	9	7	19	1.48
44350--44417	29	2.3	30	82	17	88	36	8	20	33	1.84
45956--46034	38	2.1	38	85	4	106	41	12	6	39	1.69
50535--50587	24	2.2	24	96	0	97	35	5	15	43	1.70
51537--51565	13	2.2	13	100	0	58	27	0	0	72	0.85
51985--52009	5	5.0	5	100	0	50	80	0	20	0	0.72
52088--52127	5	8.0	5	97	0	71	42	20	17	20	1.89
55705--55751	23	2.0	23	100	0	94	17	8	31	42	1.79
67667--67706	20	2.0	20	100	0	80	55	10	25	10	1.64
82339--82416	32	2.4	32	82	6	95	29	11	12	46	1.77
82693--82717	12	2.1	12	100	0	50	40	0	0	60	0.97
83002--83079	32	2.4	32	95	0	147	39	11	29	19	1.87
83068--83134	30	2.2	30	83	2	80	40	13	22	23	1.89
83254--83294	22	1.9	22	90	5	66	46	4	2	46	1.37
83767--83827	29	2.1	28	84	3	77	55	0	1	42	1.09
84045--84159	16	7.2	16	69	10	58	17	6	18	57	1.61
88282--88419	60	2.3	60	80	13	151	31	20	7	40	1.80

Tables:   1

The End!