genome.fa.s8612.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008612.1 Hibiscus syriacus cultivar Beakdansim tig00111568_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105480

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2986--3025	20	2.0	20	100	0	80	55	10	25	10	1.64
17667--17744	32	2.4	32	82	6	95	29	11	12	46	1.77
18022--18046	12	2.1	12	100	0	50	40	0	0	60	0.97
18331--18408	32	2.4	32	95	0	147	39	11	29	19	1.87
18397--18464	31	2.2	31	86	0	91	41	13	22	23	1.89
18586--18626	22	1.9	22	90	5	66	46	4	2	46	1.37
19100--19160	29	2.1	28	82	8	70	57	0	1	40	1.08
23610--23747	60	2.3	60	80	13	151	31	20	7	40	1.80
32760--32996	118	2.0	118	95	3	433	37	19	18	24	1.94
33155--33208	20	2.6	21	75	13	58	59	0	25	14	1.36
36199--36244	24	1.9	24	86	8	67	36	4	2	56	1.31
36429--36492	27	2.4	27	97	2	121	25	14	23	37	1.92
45013--45044	12	2.8	12	95	4	57	34	0	0	65	0.93
45178--45228	19	2.6	20	90	3	77	43	23	17	15	1.88
45178--45442	20	12.6	20	71	14	104	38	20	23	17	1.93
45305--45357	27	2.0	27	88	0	79	30	18	26	24	1.98
45332--45442	40	2.7	40	84	4	141	35	19	28	16	1.94
45429--45472	20	2.2	20	91	0	70	54	15	18	11	1.70
45550--45665	6	20.5	6	94	4	142	27	54	18	0	1.44
45554--45668	25	4.3	26	90	9	139	26	53	19	0	1.45
45554--45668	15	7.2	15	93	6	135	26	53	19	0	1.45
46351--46394	6	7.5	6	97	2	81	0	15	52	31	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46484--46535	20	2.6	20	96	0	95	15	28	17	38	1.90
46482--46636	20	7.6	20	73	9	89	15	22	21	40	1.91
46586--46636	19	2.6	20	90	3	77	15	17	23	43	1.88
46820--46858	14	2.9	13	85	14	53	61	5	0	33	1.18
47045--47113	23	3.0	22	74	19	61	47	0	1	50	1.09
53136--53201	30	2.2	30	91	0	105	46	7	6	39	1.57
59125--59200	40	1.9	40	83	0	98	38	19	17	25	1.93
60335--60405	18	4.3	18	74	20	82	18	49	19	12	1.79
60358--60392	12	2.8	13	86	8	54	17	48	20	14	1.81
60342--60399	30	1.9	30	96	0	107	17	48	18	15	1.82
60392--60420	8	3.8	8	90	9	51	13	37	27	20	1.91
62881--62989	24	4.5	24	75	4	103	20	15	16	47	1.82
65104--65174	18	4.3	18	76	20	91	16	49	21	12	1.79
65126--65161	12	2.8	13	83	8	56	16	47	22	13	1.82
65111--65168	30	1.9	30	100	0	116	15	48	20	15	1.81
67645--67750	24	4.5	24	75	7	99	21	13	16	48	1.81
69874--69937	18	3.9	18	73	23	77	15	48	21	14	1.80
69865--69929	30	2.2	30	91	0	103	18	49	21	10	1.78
69889--69924	12	2.8	13	83	8	56	16	47	22	13	1.82
69873--69931	30	2.0	30	100	0	118	16	47	20	15	1.83
74251--74306	17	3.7	16	75	20	66	16	44	23	16	1.86
74247--74300	28	1.9	28	92	7	92	16	44	22	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76574--76785	104	2.0	106	97	2	401	28	17	13	39	1.88
76849--76956	24	4.5	24	75	5	103	20	15	16	47	1.83
78993--79077	18	4.9	18	73	20	83	16	47	20	16	1.83
79010--79071	13	4.5	13	74	21	63	16	46	20	16	1.83
78993--79071	30	2.6	31	92	8	135	16	48	20	15	1.82
91793--91829	17	2.3	17	86	9	51	29	5	5	59	1.42
94517--94560	22	2.0	22	100	0	88	40	4	13	40	1.65
97030--97076	24	1.9	25	82	4	60	40	6	12	40	1.69
97163--97189	2	13.5	2	100	0	54	48	0	0	51	1.00
102566--102596	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1

The End!