Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008613.1 Hibiscus syriacus cultivar Beakdansim tig00111569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 647085
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 4
Found at i:346454 original size:59 final size:60
Alignment explanation
Indices: 346342--346455 Score: 144
Period size: 59 Copynumber: 1.9 Consensus size: 60
346332 AAACTAAGAC
* **
346342 TCATTCTAAATTAGTCCTCAAACTTTTAAGCATTTGAATTTCATCCACAAACTATGGCCT
1 TCATTCTAAATTAGTCCCCAAACTTTTAAGCATTCCAATTTCATCCACAAACTATGGCCT
* *
346402 TCATTCT-AATTGGTCCCCAAACTTTTTTAA-CATTCCAATTTCA-CCTCAAACTAT
1 TCATTCTAAATTAGTCCCCAAAC--TTTTAAGCATTCCAATTTCATCCACAAACTAT
346456 ACGTATATGC
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
59 23 0.49
60 18 0.38
61 6 0.13
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (60 bp):
TCATTCTAAATTAGTCCCCAAACTTTTAAGCATTCCAATTTCATCCACAAACTATGGCCT
Found at i:347136 original size:2 final size:2
Alignment explanation
Indices: 347129--347154 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
347119 TCAACATATT
347129 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
347155 CTTTTTCTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:347167 original size:3 final size:3
Alignment explanation
Indices: 347159--347185 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
347149 TCTCTCCTTT
347159 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
347186 CTCTGCATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:347272 original size:3 final size:3
Alignment explanation
Indices: 347264--347291 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
347254 CCTTTAATGA
347264 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
347292 ATACATCAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:347908 original size:15 final size:15
Alignment explanation
Indices: 347890--347919 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
347880 AATAAATAGT
347890 AAATGGTAAAATAAA
1 AAATGGTAAAATAAA
*
347905 AAATGTTAAAATAAA
1 AAATGGTAAAATAAA
347920 TGAAAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (15 bp):
AAATGGTAAAATAAA
Found at i:348042 original size:26 final size:26
Alignment explanation
Indices: 348013--348062 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
348003 CGAATAAACT
348013 AAAAAAAATGATAAAT-T-TTAAAAGAG
1 AAAAAAAA-GA-AAATATGTTAAAAGAG
348039 AAAAAAAAGAAAATATGTTAAAAG
1 AAAAAAAAGAAAATATGTTAAAAG
348063 GAAGAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 4 0.18
25 3 0.14
26 15 0.68
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.20
Consensus pattern (26 bp):
AAAAAAAAGAAAATATGTTAAAAGAG
Found at i:349041 original size:25 final size:26
Alignment explanation
Indices: 349013--349063 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
349003 GTAGGATTAG
349013 ATAACT-AAAAAATTATCGATTCAAT
1 ATAACTAAAAAAATTATCGATTCAAT
349038 ATAACTAAAAAAATTATCGATTCAAT
1 ATAACTAAAAAAATTATCGATTCAAT
349064 GTGACATCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.53, C:0.12, G:0.04, T:0.31
Consensus pattern (26 bp):
ATAACTAAAAAAATTATCGATTCAAT
Found at i:354800 original size:62 final size:62
Alignment explanation
Indices: 354713--354859 Score: 154
Period size: 62 Copynumber: 2.4 Consensus size: 62
354703 GATCGATAAT
* * * * * *
354713 TCGCAACGCGATCTCCGA-TATCGCAA-ATCAGTTTCCAGATTCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTATCGCAATATCAATATCCA-AATCGCAACGCGAACTTCGACTA
* * ** *
354774 TCGCAATGCGAACTTCGACTATCGCAATGTGAATATGTAAATCGCAATGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTATCGCAATATCAATATCCAAATCGCAACGCGAACTTCGACTA
* *
354836 TCGTAATGCGAACTTGGACTATCG
1 TCGCAATGCGAACTTCGACTATCG
354860 TAATGCGAAC
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
61 15 0.21
62 51 0.72
63 5 0.07
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (62 bp):
TCGCAATGCGAACTTCGACTATCGCAATATCAATATCCAAATCGCAACGCGAACTTCGACTA
Found at i:354818 original size:41 final size:41
Alignment explanation
Indices: 354773--354949 Score: 149
Period size: 41 Copynumber: 4.3 Consensus size: 41
354763 AACTTCGACT
*
354773 ATCGCAATGCGAACTTCGACTATCGCAATGTGAATATGTAA
1 ATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTAA
*
354814 ATCGCAATGCGAACTTCGACTATCGTAATGCGAACT-TGGACTATCGTA
1 ATCGCAATGCGAACTTCGACTATCGCAATGCGAA-TAT-G--TA----A
*
354862 AT-GCGAACTTGCGAACTTGGACTATCGCAATGCGAATATGTAA
1 ATCGC-AA--TGCGAACTTCGACTATCGCAATGCGAATATGTAA
*
354905 ATCGCAATGCG-A--T--A--GTCG-AATGCGAATATGTAA
1 ATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTAA
354938 ATCGCAATGCGA
1 ATCGCAATGCGA
354950 TAGTCGACTA
Statistics
Matches: 117, Mismatches: 5, Indels: 35
0.75 0.03 0.22
Matches are distributed among these distances:
33 26 0.22
34 3 0.03
36 1 0.01
38 1 0.01
40 1 0.01
41 37 0.32
42 2 0.02
43 5 0.04
44 4 0.03
47 4 0.03
48 5 0.04
49 2 0.02
50 26 0.22
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (41 bp):
ATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTAA
Found at i:354872 original size:21 final size:21
Alignment explanation
Indices: 354753--354871 Score: 145
Period size: 21 Copynumber: 5.7 Consensus size: 21
354743 GTTTCCAGAT
*
354753 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
354774 TCGCAATGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
* *
354795 TCGCAATGTGAA-TAT-GTA-AA
1 TCGCAATGCGAACT-TCG-ACTA
354815 TCGCAATGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
* *
354836 TCGTAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTCGACTA
*
354857 TCGTAATGCGAACTT
1 TCGCAATGCGAACTT
354872 GCGAACTTGG
Statistics
Matches: 86, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
20 16 0.19
21 70 0.81
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (21 bp):
TCGCAATGCGAACTTCGACTA
Found at i:354884 original size:29 final size:29
Alignment explanation
Indices: 354842--354897 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
354832 ACTATCGTAA
*
354842 TGCGAACTTGGACTATCGTAATGCGAACT
1 TGCGAACTTGGACTATCGCAATGCGAACT
354871 TGCGAACTTGGACTATCGCAATGCGAA
1 TGCGAACTTGGACTATCGCAATGCGAA
354898 TATGTAAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (29 bp):
TGCGAACTTGGACTATCGCAATGCGAACT
Found at i:354910 original size:20 final size:20
Alignment explanation
Indices: 354885--354949 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
354875 AACTTGGACT
354885 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
354905 ATCGCAATGCG-ATA-G---
1 ATCGCAATGCGAATATGTAA
354920 -TCG-AATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
354938 ATCGCAATGCGA
1 ATCGCAATGCGA
354950 TAGTCGACTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 6 0.16
14 6 0.16
15 1 0.03
18 1 0.03
19 6 0.16
20 18 0.47
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:354932 original size:33 final size:33
Alignment explanation
Indices: 354890--354956 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
354880 GGACTATCGC
354890 AATGCGAATATGTAAATCGCAATGCGATAGTCG
1 AATGCGAATATGTAAATCGCAATGCGATAGTCG
354923 AATGCGAATATGTAAATCGCAATGCGATAGTCG
1 AATGCGAATATGTAAATCGCAATGCGATAGTCG
354956 A
1 A
354957 CTATCTCTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (33 bp):
AATGCGAATATGTAAATCGCAATGCGATAGTCG
Found at i:355197 original size:6 final size:6
Alignment explanation
Indices: 355186--355224 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
355176 GACACGTATT
355186 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
355225 CGAGACGGAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.33, C:0.51, G:0.15, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:355735 original size:6 final size:6
Alignment explanation
Indices: 355714--355768 Score: 96
Period size: 6 Copynumber: 9.5 Consensus size: 6
355704 TCTCGTCTCG
355714 GGTCG- GGTCG- GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
355760 GGTCGT GGT
1 GGTCGT GGT
355769 AATGGTAATG
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 10 0.20
6 39 0.80
ACGTcount: A:0.00, C:0.16, G:0.53, T:0.31
Consensus pattern (6 bp):
GGTCGT
Found at i:355774 original size:6 final size:6
Alignment explanation
Indices: 355765--355795 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
355755 GTCGTGGTCG
355765 TGGTAA TGGTAA TGGTAA TGGTAA TGGTAA T
1 TGGTAA TGGTAA TGGTAA TGGTAA TGGTAA T
355796 ACGTGTCTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (6 bp):
TGGTAA
Found at i:355934 original size:21 final size:21
Alignment explanation
Indices: 355910--356046 Score: 165
Period size: 21 Copynumber: 6.6 Consensus size: 21
355900 TTTGGAATAA
*
355910 ATCGCAACGCGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
355931 ATCGCAATGCGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
355952 ATCGCAATGCGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
*
355973 ATCGCAATGCGAA-TAT-GTA-A
1 ATCGCAATGCGAACT-TCG-ACT
*
355993 ATCGCAATGCGATA-GTCGACT
1 ATCGCAATGCGA-ACTTCGACT
**
356014 ATCGCAGCGCGAACTTCGACT
1 ATCGCAATGCGAACTTCGACT
*
356035 ATCGCATTGCGA
1 ATCGCAATGCGA
356047 TTTACATATT
Statistics
Matches: 101, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
20 17 0.17
21 84 0.83
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (21 bp):
ATCGCAATGCGAACTTCGACT
Found at i:356018 original size:62 final size:61
Alignment explanation
Indices: 355930--356197 Score: 203
Period size: 62 Copynumber: 4.3 Consensus size: 61
355920 GAACTTCGAC
*
355930 TATCGCAATGCGA-ACTTCGACTATCGCAATGCGAACTTCGACTATCGCAATGCGAATATGTA-A
1 TATCGCAATGCGATA-GTCGACTATCGCAATGCGAACTTCGACTATCGCAATGCG-AT-T-TACA
** *
355993 -ATCGCAATGCGATAGTCGACTATCGCAGCGCGAACTTCGACTATCGCATTGCGATTTACA
1 TATCGCAATGCGATAGTCGACTATCGCAATGCGAACTTCGACTATCGCAATGCGATTTACA
* * * * * * *
356053 TATTCGCATTGCGATAGTGGACTATCGCATTGCG-ATTTAC-ATCT-TCGCATTGCGATAGTCCA
1 TA-TCGCAATGCGATAGTCGACTATCGCAATGCGAACTT-CGA-CTATCGCAATGCGAT-TTACA
* * * * *
356115 -AGTTCGCATTGCGATAGTCGAAGT-TCGCATTGCGATAGTT-GACTATCGCATTGCGATTTACA
1 TA--TCGCAATGCGATAGTCG-ACTATCGCAATGCGA-ACTTCGACTATCGCAATGCGATTTACA
*
356177 TATTCGCATTGCGATAGTCGA
1 TA-TCGCAATGCGATAGTCGA
356198 AGTTCGCATT
Statistics
Matches: 175, Mismatches: 16, Indels: 30
0.79 0.07 0.14
Matches are distributed among these distances:
59 2 0.01
60 2 0.01
61 21 0.12
62 130 0.74
63 17 0.10
64 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (61 bp):
TATCGCAATGCGATAGTCGACTATCGCAATGCGAACTTCGACTATCGCAATGCGATTTACA
Found at i:356060 original size:41 final size:42
Alignment explanation
Indices: 356028--356212 Score: 222
Period size: 41 Copynumber: 4.5 Consensus size: 42
356018 CAGCGCGAAC
356028 TTCGACTATCGCATTGCGATTTACATATTCGCATTGCGATAG
1 TTCGACTATCGCATTGCGATTTACATATTCGCATTGCGATAG
* *
356070 -TGGACTATCGCATTGCGATTTACATCTTCGCATTGCGATAG
1 TTCGACTATCGCATTGCGATTTACATATTCGCATTGCGATAG
* * * *
356111 TCCAAGT-TCGCATTGCGATAGT-CGA-AGTTCGCATTGCGATAG
1 TTCGACTATCGCATTGCGAT-TTAC-ATA-TTCGCATTGCGATAG
356153 TT-GACTATCGCATTGCGATTTACATATTCGCATTGCGATAG
1 TTCGACTATCGCATTGCGATTTACATATTCGCATTGCGATAG
*
356194 -TCGAAGT-TCGCATTGCGAT
1 TTCG-ACTATCGCATTGCGAT
356213 AGTCGAAGTT
Statistics
Matches: 121, Mismatches: 13, Indels: 19
0.79 0.08 0.12
Matches are distributed among these distances:
40 1 0.01
41 84 0.69
42 36 0.30
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (42 bp):
TTCGACTATCGCATTGCGATTTACATATTCGCATTGCGATAG
Found at i:356082 original size:21 final size:21
Alignment explanation
Indices: 356032--356253 Score: 132
Period size: 21 Copynumber: 10.7 Consensus size: 21
356022 GCGAACTTCG
*
356032 ACTATCGCATTGCGAT--T-T
1 ACTATCGCATTGCGATAGTGA
*
356050 ACATATTCGCATTGCGATAGTGG
1 AC-TA-TCGCATTGCGATAGTGA
*
356073 ACTATCGCATTGCGAT--TTA
1 ACTATCGCATTGCGATAGTGA
*
356092 CATCT-TCGCATTGCGATAGTCCA
1 -A-CTATCGCATTGCGATAGT-GA
*
356115 AGT-TCGCATTGCGATAGTCGA
1 ACTATCGCATTGCGATAGT-GA
*
356136 AGT-TCGCATTGCGATAGTTG-
1 ACTATCGCATTGCGATAG-TGA
*
356156 ACTATCGCATTGCGAT--T-T
1 ACTATCGCATTGCGATAGTGA
356174 ACATATTCGCATTGCGATAGTCGA
1 AC-TA-TCGCATTGCGATAGT-GA
*
356198 AGT-TCGCATTGCGATAGTCGA
1 ACTATCGCATTGCGATAGT-GA
*
356219 AGT-TCGCATTGCGATAGTCGA
1 ACTATCGCATTGCGATAGT-GA
* *
356240 AGT-TCGCGTTGCGA
1 ACTATCGCATTGCGA
356254 ATCTGGAAAC
Statistics
Matches: 175, Mismatches: 10, Indels: 35
0.80 0.05 0.16
Matches are distributed among these distances:
18 5 0.03
19 5 0.03
20 39 0.22
21 114 0.65
22 7 0.04
23 4 0.02
24 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (21 bp):
ACTATCGCATTGCGATAGTGA
Found at i:356147 original size:83 final size:83
Alignment explanation
Indices: 356055--356236 Score: 337
Period size: 83 Copynumber: 2.2 Consensus size: 83
356045 GATTTACATA
*
356055 TTCGCATTGCGATAGTGGACTATCGCATTGCGATTTACATCTTCGCATTGCGATAGTCCAAGTTC
1 TTCGCATTGCGATAGTGGACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTC
356120 GCATTGCGATAGTCGAAG
66 GCATTGCGATAGTCGAAG
* *
356138 TTCGCATTGCGATAGTTGACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCGAAGTTC
1 TTCGCATTGCGATAGTGGACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTC
356203 GCATTGCGATAGTCGAAG
66 GCATTGCGATAGTCGAAG
356221 TTCGCATTGCGATAGT
1 TTCGCATTGCGATAGT
356237 CGAAGTTCGC
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 96 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.32
Consensus pattern (83 bp):
TTCGCATTGCGATAGTGGACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCCAAGTTC
GCATTGCGATAGTCGAAG
Found at i:356152 original size:42 final size:42
Alignment explanation
Indices: 356096--356253 Score: 216
Period size: 42 Copynumber: 3.8 Consensus size: 42
356086 GATTTACATC
*
356096 TTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTCGAAG
* * *
356138 TTCGCATTGCGATAGTTG-ACTATCGCATTGCGAT-TTAC-ATA-
1 TTCGCATTGCGATAGTCGAAGT-TCGCATTGCGATAGT-CGA-AG
356179 TTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTCGAAG
*
356221 TTCGCATTGCGATAGTCGAAGTTCGCGTTGCGA
1 TTCGCATTGCGATAGTCGAAGTTCGCATTGCGA
356254 ATCTGGAAAC
Statistics
Matches: 101, Mismatches: 8, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
41 35 0.35
42 66 0.65
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (42 bp):
TTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTCGAAG
Found at i:356198 original size:62 final size:62
Alignment explanation
Indices: 356031--356233 Score: 247
Period size: 62 Copynumber: 3.3 Consensus size: 62
356021 CGCGAACTTC
* *
356031 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGT-GGACTATCGCATTGCGAT--TT
1 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCGAAGT-TCGCATTGCGATAGTT
* * *
356091 -ACATCTTCGCATTGCGATAGTCCA-AGTTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGT
1 GAC-T-ATCGCATTGCGAT-TTACATA-TTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGT
356154 T
62 T
*
356155 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTC
1 GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTT
*
356217 GAAGT-TCGCATTGCGAT
1 G-ACTATCGCATTGCGAT
356234 AGTCGAAGTT
Statistics
Matches: 123, Mismatches: 10, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
59 2 0.02
60 1 0.01
61 13 0.11
62 84 0.68
63 18 0.15
64 3 0.02
65 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.33
Consensus pattern (62 bp):
GACTATCGCATTGCGATTTACATATTCGCATTGCGATAGTCGAAGTTCGCATTGCGATAGTT
Found at i:361566 original size:36 final size:36
Alignment explanation
Indices: 361451--361559 Score: 148
Period size: 35 Copynumber: 3.0 Consensus size: 36
361441 TGGCAACCAA
* *
361451 CTTTGAAAAAATGGTTTTCAAAGTTTGATAAATATTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
361488 CTTTG-AAAATGGTTTTCAAAATTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
* *
361523 CTTTGAAAAATGATTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAATG-GTTTTCAAAGTTTGGTAAATGTTT
361560 GTTGAAATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
35 32 0.50
36 6 0.09
37 26 0.41
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.45
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:366105 original size:21 final size:21
Alignment explanation
Indices: 366081--366141 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
366071 AACTTTGAAA
366081 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
366102 AAAT-G-TTTC----TTT-GT
1 AAATGGTTTTCAAAGTTTGGT
366116 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
366137 AAATG
1 AAATG
366142 TTTCTTTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 14
0.70 0.00 0.30
Matches are distributed among these distances:
14 6 0.18
15 4 0.12
16 4 0.12
19 4 0.12
20 4 0.12
21 11 0.33
ACGTcount: A:0.30, C:0.05, G:0.21, T:0.44
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:366120 original size:35 final size:36
Alignment explanation
Indices: 366073--366181 Score: 166
Period size: 35 Copynumber: 3.0 Consensus size: 36
366063 TGGCAACCAA
366073 CTTTGAAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTG-AAAAATGGTTTTCAAAGTTTGGTAAATGTTT
*
366110 CTTTG-TAAATGGTTTTCAAAGTTTGGTAAATGTTT
1 CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
* *
366145 CTTTGAAAAATAGTTTTTCAAAGTTTGGTAGATGTTT
1 CTTTGAAAAAT-GGTTTTCAAAGTTTGGTAAATGTTT
366182 GTTGAAATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
35 34 0.52
36 4 0.06
37 28 0.42
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (36 bp):
CTTTGAAAAATGGTTTTCAAAGTTTGGTAAATGTTT
Found at i:379965 original size:19 final size:19
Alignment explanation
Indices: 379943--379989 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
379933 ACTACTATAT
379943 TACTTGCATCGATTGTGTA
1 TACTTGCATCGATTGTGTA
379962 TACTTGCATCGATTGTGTA
1 TACTTGCATCGATTGTGTA
379981 TACTTGCAT
1 TACTTGCAT
379990 AGAATTACGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (19 bp):
TACTTGCATCGATTGTGTA
Found at i:383237 original size:16 final size:16
Alignment explanation
Indices: 383205--383238 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
383195 AAATCTGAAT
* *
383205 TTTATTTTATTAGTTA
1 TTTATTTTACTAATTA
383221 TTTATTTTACTAATTA
1 TTTATTTTACTAATTA
383237 TT
1 TT
383239 CCCTTCATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTATTTTACTAATTA
Found at i:385120 original size:25 final size:25
Alignment explanation
Indices: 385092--385148 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
385082 GCATAGCATG
* *
385092 ACTAAAAAATTTCTAAATAGAAACT
1 ACTAAAAAAATTCTAAACAGAAACT
385117 ACTAAAAAAATTCTAAACAGAAACT
1 ACTAAAAAAATTCTAAACAGAAACT
*
385142 ATTAAAA
1 ACTAAAA
385149 GATCATACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.60, C:0.12, G:0.04, T:0.25
Consensus pattern (25 bp):
ACTAAAAAAATTCTAAACAGAAACT
Found at i:391210 original size:79 final size:82
Alignment explanation
Indices: 391057--391211 Score: 190
Period size: 79 Copynumber: 1.9 Consensus size: 82
391047 AAAGTGGTCC
* * * *
391057 AAAATTACGAAAATAGCATCATTTTAAAATTAATTACCAATATAGCACCATTTTCAAAATATTTA
1 AAAATTACGAAAATAG-A-CATTTTAAAATAAATTACAAAAATAGCACCATTTTCAAAATAATTA
*
391122 CTAAAATGTCATTTTTTCA
64 CCAAAATGTCATTTTTTCA
* * *
391141 AAAATTAC-AAAATAG-CATTTTAAAA-AAATTACAAAAATAGCACCATTTTCGAATTAATTCCC
1 AAAATTACGAAAATAGACATTTTAAAATAAATTACAAAAATAGCACCATTTTCAAAATAATTACC
*
391203 AATATGTCA
66 AAAATGTCA
391212 CCAATTTCAA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
79 37 0.60
80 10 0.16
83 7 0.11
84 8 0.13
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.34
Consensus pattern (82 bp):
AAAATTACGAAAATAGACATTTTAAAATAAATTACAAAAATAGCACCATTTTCAAAATAATTACC
AAAATGTCATTTTTTCA
Found at i:391238 original size:29 final size:29
Alignment explanation
Indices: 391059--391242 Score: 104
Period size: 29 Copynumber: 6.6 Consensus size: 29
391049 AGTGGTCCAA
* *
391059 AATTACGAAAATAG-CATCATTTT-AAAATT
1 AATTACTAAAAT-GTCACCATTTTCAAAA-T
* *
391088 AATTACCAATATAG-CACCATTTTCAAAAT
1 AATTACTAAAAT-GTCACCATTTTCAAAAT
* **
391117 ATTTACTAAAATGTCA-TTTTTTC-AAA-
1 AATTACTAAAATGTCACCATTTTCAAAAT
* *
391143 AATTAC-AAAA--T-AGCATTTT-AAAAA
1 AATTACTAAAATGTCACCATTTTCAAAAT
* * *
391167 AATTACAAAAATAG-CACCATTTTCGAATT
1 AATTACTAAAAT-GTCACCATTTTCAAAAT
* * * *
391196 AATTCCCAATATGTCACCAATTTCAAAAT
1 AATTACTAAAATGTCACCATTTTCAAAAT
391225 AATTACTAAAATGTCACC
1 AATTACTAAAATGTCACC
391243 CGGTCAATAG
Statistics
Matches: 119, Mismatches: 24, Indels: 24
0.71 0.14 0.14
Matches are distributed among these distances:
22 1 0.01
23 8 0.07
24 6 0.05
25 8 0.07
26 5 0.04
27 3 0.03
28 14 0.12
29 70 0.59
30 4 0.03
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.33
Consensus pattern (29 bp):
AATTACTAAAATGTCACCATTTTCAAAAT
Found at i:391275 original size:18 final size:18
Alignment explanation
Indices: 391252--391292 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
391242 CCGGTCAATA
**
391252 GTCAACAGGTCGGGTCGG
1 GTCAACAGGTCAAGTCGG
*
391270 GTCAACGGGTCAAGTCGG
1 GTCAACAGGTCAAGTCGG
391288 GTCAA
1 GTCAA
391293 AACTGGTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.22, C:0.22, G:0.39, T:0.17
Consensus pattern (18 bp):
GTCAACAGGTCAAGTCGG
Found at i:397098 original size:15 final size:15
Alignment explanation
Indices: 397078--397109 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
397068 TTTGGATGAA
397078 GATGACGATGACAAG
1 GATGACGATGACAAG
397093 GATGACGATGACAAG
1 GATGACGATGACAAG
397108 GA
1 GA
397110 AATGTCATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.34, T:0.12
Consensus pattern (15 bp):
GATGACGATGACAAG
Found at i:401333 original size:20 final size:20
Alignment explanation
Indices: 401308--401367 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
401298 TTTTGGTGCA
401308 GAGGGAACCGATACCCCTAT
1 GAGGGAACCGATACCCCTAT
* *
401328 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGA-TACCCCTAT
*
401349 GAAGGGGAACCGATTCCCC
1 G-A-GGGAACCGATACCCC
401368 CCACAGGGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.32
21 8 0.24
22 6 0.18
23 9 0.26
ACGTcount: A:0.25, C:0.32, G:0.27, T:0.17
Consensus pattern (20 bp):
GAGGGAACCGATACCCCTAT
Found at i:401359 original size:23 final size:21
Alignment explanation
Indices: 401308--401368 Score: 79
Period size: 23 Copynumber: 2.9 Consensus size: 21
401298 TTTTGGTGCA
*
401308 GAGGGAACCGA-TACCCCTAT
1 GAGGGAACCGATTCCCCCTAT
*
401328 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCTAT
401349 GAAGGGGAACCGATTCCCCC
1 G-A-GGGAACCGATTCCCCC
401369 CACAGGGGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 11 0.31
21 8 0.22
22 1 0.03
23 16 0.44
ACGTcount: A:0.25, C:0.33, G:0.26, T:0.16
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCTAT
Found at i:407863 original size:28 final size:30
Alignment explanation
Indices: 407815--407872 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 30
407805 TATAGAACCA
*
407815 TTTTCAAAATATTTACTAAAAT-GTCATTTT
1 TTTTCAAAATATTTACAAAAATAG-CATTTT
407845 TTTTCAAAA-A-TTACAAAAATAGCATTTT
1 TTTTCAAAATATTTACAAAAATAGCATTTT
407873 AAAAAATTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 15 0.58
29 2 0.08
30 9 0.35
ACGTcount: A:0.41, C:0.10, G:0.03, T:0.45
Consensus pattern (30 bp):
TTTTCAAAATATTTACAAAAATAGCATTTT
Found at i:409944 original size:25 final size:25
Alignment explanation
Indices: 409903--409978 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 25
409893 CTTTAAAATA
*
409903 TAAATATTTAA-AATAATATTATTTT
1 TAAA-ATTTAATATTAATATTATTTT
*
409928 TAAAATTTAATATTAATATGATATTT
1 TAAAATTTAATATTAATATTAT-TTT
* * * *
409954 TAATA-TCATTTTTAATATTATTTT
1 TAAAATTTAATATTAATATTATTTT
409978 T
1 T
409979 CACTACTAGA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
24 10 0.24
25 25 0.60
26 7 0.17
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (25 bp):
TAAAATTTAATATTAATATTATTTT
Found at i:409968 original size:12 final size:12
Alignment explanation
Indices: 409940--409978 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
409930 AAATTTAATA
*
409940 TTAATATGATATT
1 TTAATATCAT-TT
409953 TTAATATCATTT
1 TTAATATCATTT
*
409965 TTAATATTATTT
1 TTAATATCATTT
409977 TT
1 TT
409979 CACTACTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 15 0.62
13 9 0.38
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (12 bp):
TTAATATCATTT
Found at i:411268 original size:14 final size:14
Alignment explanation
Indices: 411234--411276 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
411224 CCGAAATACA
411234 GAAATCAGATATCAG
1 GAAATCA-ATATCAG
411249 GAAATCAATATTCAG
1 GAAATCAATA-TCAG
411264 G-AATCAAGTATCA
1 GAAATCAA-TATCA
411277 TGTATCATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.23
Consensus pattern (14 bp):
GAAATCAATATCAG
Found at i:412096 original size:25 final size:26
Alignment explanation
Indices: 412048--412096 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
412038 ATTATAGCAC
* *
412048 CATTTTCCAAATATTTACTAAAATGT
1 CATTTTCCAAATAATTACAAAAATGT
*
412074 CATTTTTCAAA-AATTACAAAAAT
1 CATTTTCCAAATAATTACAAAAAT
412097 AGCATAGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 10 0.50
26 10 0.50
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (26 bp):
CATTTTCCAAATAATTACAAAAATGT
Found at i:412131 original size:82 final size:82
Alignment explanation
Indices: 411994--412157 Score: 190
Period size: 82 Copynumber: 2.0 Consensus size: 82
411984 AAATTAATAT
* * * * *
411994 TTTTTCAAAATTACGAAAATAGCACCATTTTAAAATTAATTATCATTATAGCACCATTTTCCAAA
1 TTTTTCAAAATTACAAAAATAGCACCAGTTTAAAATTAATTATCAATATAGCACCAATTTCAAAA
* *
412059 TATTTACTAAAATGTCA
66 TAATTAATAAAATGTCA
* **
412076 TTTTTCAAAAATTACAAAAATAGCA-TAGTTTCGAATTAATT-TCCAATAT-GTCACCAATTTCA
1 TTTTTC-AAAATTACAAAAATAGCACCAGTTTAAAATTAATTAT-CAATATAG-CACCAATTTCA
412138 AAATAATTAATAAAATGTCA
63 AAATAATTAATAAAATGTCA
412158 CCCGATCAAC
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
81 2 0.03
82 50 0.72
83 17 0.25
ACGTcount: A:0.43, C:0.15, G:0.05, T:0.37
Consensus pattern (82 bp):
TTTTTCAAAATTACAAAAATAGCACCAGTTTAAAATTAATTATCAATATAGCACCAATTTCAAAA
TAATTAATAAAATGTCA
Found at i:412201 original size:13 final size:13
Alignment explanation
Indices: 412183--412207 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
412173 ATGGTCAACA
412183 GTCAACGGGTCGG
1 GTCAACGGGTCGG
412196 GTCAACGGGTCG
1 GTCAACGGGTCG
412208 TGTCGGGTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.44, T:0.16
Consensus pattern (13 bp):
GTCAACGGGTCGG
Found at i:414151 original size:24 final size:26
Alignment explanation
Indices: 414127--414242 Score: 66
Period size: 23 Copynumber: 4.5 Consensus size: 26
414117 TAAAATATAA
414127 ATATTTAA-AATAATATTTTTTTAA-
1 ATATTTAATAATAATATTTTTTTAAC
* * *
414151 A-ATTTAATATTAATATGATATTTTAAT
1 ATATTTAATAATAATAT--TTTTTTAAC
* *
414178 ATTATTTTAATAAAAATATTAATTATTAAC
1 A-TA-TTTAATAATAATATT--TTTTTAAC
* *
414208 ATATTTAA-AATAA-A-TTTATTAAT
1 ATATTTAATAATAATATTTTTTTAAC
414231 AT-TTTAATAATA
1 ATATTTAATAATA
414243 TAATAATATT
Statistics
Matches: 73, Mismatches: 9, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
22 5 0.07
23 19 0.26
24 8 0.11
25 1 0.01
26 8 0.11
27 5 0.07
28 6 0.08
29 3 0.04
30 18 0.25
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (26 bp):
ATATTTAATAATAATATTTTTTTAAC
Found at i:414171 original size:29 final size:31
Alignment explanation
Indices: 414115--414174 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
414105 AATTTTTCAC
414115 TTTAAAATATAAATATTTAAAATAATATTTT
1 TTTAAAATATAAATATTTAAAATAATATTTT
* * *
414146 TTTAAAAT-TTAATA-TTAATATGATATTTT
1 TTTAAAATATAAATATTTAAAATAATATTTT
414175 AATATTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 13 0.50
30 5 0.19
31 8 0.31
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (31 bp):
TTTAAAATATAAATATTTAAAATAATATTTT
Found at i:414434 original size:20 final size:19
Alignment explanation
Indices: 414409--414449 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
414399 TACTTTTATT
*
414409 TATGTATTTAATATTATATA
1 TATGTATTCAATATTA-ATA
*
414429 TATGTATTCACTATTAATA
1 TATGTATTCAATATTAATA
414448 TA
1 TA
414450 ATAGTTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.51
Consensus pattern (19 bp):
TATGTATTCAATATTAATA
Found at i:414488 original size:23 final size:21
Alignment explanation
Indices: 414461--414515 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 21
414451 TAGTTTAATA
414461 ATATTATAAAAATTCCTTAAAAT
1 ATATTATAAAAATT--TTAAAAT
*
414484 ATATTTATTAATAATTTTAAAAT
1 ATA-TTA-TAAAAATTTTAAAAT
*
414507 ATAATATAA
1 ATATTATAA
414516 TATTTTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 3 0.11
22 2 0.07
23 13 0.46
24 3 0.11
25 7 0.25
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (21 bp):
ATATTATAAAAATTTTAAAAT
Found at i:414516 original size:21 final size:21
Alignment explanation
Indices: 414443--414523 Score: 60
Period size: 21 Copynumber: 3.8 Consensus size: 21
414433 TATTCACTAT
*
414443 TAATATAAT-AGTTTAATAATA
1 TAATATAATAATTTTAA-AATA
*
414464 T--TATAAAAATTCCTTAAAATA
1 TAATATAATAATT--TTAAAATA
*
414485 TATTTATTAATAATTTTAAAATA
1 TA-ATA-TAATAATTTTAAAATA
*
414508 TAATATAATATTTTTA
1 TAATATAATAATTTTA
414524 TTTTTATATA
Statistics
Matches: 48, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
19 5 0.10
20 2 0.04
21 16 0.33
22 6 0.12
23 10 0.21
24 2 0.04
25 7 0.15
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.47
Consensus pattern (21 bp):
TAATATAATAATTTTAAAATA
Found at i:414716 original size:22 final size:20
Alignment explanation
Indices: 414664--414717 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 20
414654 ATTATTCTAA
*
414664 TATTTTTAAAATAATAATAT
1 TATTTTTATAATAATAATAT
414684 TAAGTTTTTATAATAAATAATAT
1 T-A-TTTTTATAAT-AATAATAT
414707 TATTTATTATA
1 TATTT-TTATA
414718 TTTTATATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
20 1 0.03
21 4 0.14
22 15 0.52
23 9 0.31
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
TATTTTTATAATAATAATAT
Found at i:419664 original size:29 final size:29
Alignment explanation
Indices: 419622--419678 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
419612 ATTCTACAGT
419622 GATCTCGTAGGACGCCATGCAATCCAGGC
1 GATCTCGTAGGACGCCATGCAATCCAGGC
*
419651 GATCTTGTAGGACGCCATGCAATCCAGG
1 GATCTCGTAGGACGCCATGCAATCCAGG
419679 TGACATACGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (29 bp):
GATCTCGTAGGACGCCATGCAATCCAGGC
Found at i:419714 original size:20 final size:20
Alignment explanation
Indices: 419689--419727 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
419679 TGACATACGG
419689 GGTGACATACGAGCCATACT
1 GGTGACATACGAGCCATACT
419709 GGTGACATACGAGCCATAC
1 GGTGACATACGAGCCATAC
419728 AAGGCATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.26, G:0.26, T:0.18
Consensus pattern (20 bp):
GGTGACATACGAGCCATACT
Found at i:419765 original size:52 final size:52
Alignment explanation
Indices: 419709--419811 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 52
419699 GAGCCATACT
419709 GGTGACATACGAGCCATACAAGGCATATACGAACCATGCGAGCCAATGGAGG
1 GGTGACATACGAGCCATACAAGGCATATACGAACCATGCGAGCCAATGGAGG
*
419761 GGTGACATACGAGCCATACAAGGCATATACGAGCCATGCGAGCCAATGGAG
1 GGTGACATACGAGCCATACAAGGCATATACGAACCATGCGAGCCAATGGAG
419812 AGATCGAGAG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.34, C:0.23, G:0.29, T:0.14
Consensus pattern (52 bp):
GGTGACATACGAGCCATACAAGGCATATACGAACCATGCGAGCCAATGGAGG
Found at i:419921 original size:27 final size:29
Alignment explanation
Indices: 419851--419927 Score: 131
Period size: 29 Copynumber: 2.7 Consensus size: 29
419841 GACCTTGTAG
*
419851 TTGTAGGTCGCTATGTAGTCCCGGCGACC
1 TTGTAGGTCGCCATGTAGTCCCGGCGACC
419880 TTGTAGGTCGCCATGTAGTCCCGGCGACC
1 TTGTAGGTCGCCATGTAGTCCCGGCGACC
419909 -T-TAGGTCGCCATGTAGTCC
1 TTGTAGGTCGCCATGTAGTCC
419928 TAGCTCACGA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
27 18 0.38
28 1 0.02
29 28 0.60
ACGTcount: A:0.14, C:0.29, G:0.30, T:0.27
Consensus pattern (29 bp):
TTGTAGGTCGCCATGTAGTCCCGGCGACC
Found at i:420438 original size:45 final size:45
Alignment explanation
Indices: 420335--420466 Score: 134
Period size: 45 Copynumber: 3.0 Consensus size: 45
420325 TACATAAATT
*
420335 AAAAATTATTTAATTAGTATATG-TTTG---ATAGTTA--TATAGTTA
1 AAAAATTATTTAATTAGT-T-TGTTTTGTTAATAGTTAGTTATA-TAA
*
420377 AAAAA-TAATTAATTAGTTTGTTTTGTTAATAGTTAGTTATATAA
1 AAAAATTATTTAATTAGTTTGTTTTGTTAATAGTTAGTTATATAA
*
420421 AAAAATTATTTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATAT
1 AAAAATTATTTAATTAGTTTGT-TTTGTT-AATAGTT-AGTTATAT
420467 TTGTTTGTTG
Statistics
Matches: 76, Mismatches: 4, Indels: 14
0.81 0.04 0.15
Matches are distributed among these distances:
39 2 0.03
40 5 0.07
41 11 0.14
42 5 0.07
43 7 0.09
44 7 0.09
45 19 0.25
46 5 0.07
47 7 0.09
48 8 0.11
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (45 bp):
AAAAATTATTTAATTAGTTTGTTTTGTTAATAGTTAGTTATATAA
Found at i:420579 original size:34 final size:34
Alignment explanation
Indices: 420507--420588 Score: 98
Period size: 34 Copynumber: 2.5 Consensus size: 34
420497 TTAGTTAGTA
* * *
420507 AGTTTATTAGTAG-TAT-GTTATAATGAAAAAAT
1 AGTTTATTAGTTGTTTTAGTTATAATAAAAAAAT
420539 AGTTTATTAGTTAGTTTTAGTTAT-ATAAAAAAAT
1 AGTTTATTAGTT-GTTTTAGTTATAATAAAAAAAT
*
420573 ATTTTATTAGTTGTTT
1 AGTTTATTAGTTGTTT
420589 AAGGGTTTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
32 11 0.26
33 5 0.12
34 22 0.51
35 5 0.12
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (34 bp):
AGTTTATTAGTTGTTTTAGTTATAATAAAAAAAT
Found at i:420661 original size:16 final size:16
Alignment explanation
Indices: 420629--420675 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
420619 TTTAAAAAGT
*
420629 TTAGTTTGTTAGT-TTA
1 TTAGTTTATTA-TATTA
420645 TTAGTTTATTATATTA
1 TTAGTTTATTATATTA
*
420661 TAAG-TTATTATATTA
1 TTAGTTTATTATATTA
420676 AAGTTTAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 12 0.43
16 16 0.57
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.60
Consensus pattern (16 bp):
TTAGTTTATTATATTA
Found at i:420670 original size:15 final size:14
Alignment explanation
Indices: 420650--420680 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
420640 GTTTATTAGT
420650 TTATTATATTATAAG
1 TTATTATATTA-AAG
420665 TTATTATATTAAAG
1 TTATTATATTAAAG
420679 TT
1 TT
420681 TAGTGTTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (14 bp):
TTATTATATTAAAG
Found at i:422965 original size:52 final size:52
Alignment explanation
Indices: 422903--423007 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
422893 CTCTCGATCT
422903 CTCCATTGGCTCGCATGGCTCGTATATGCCTTGTATGGCTCGTATGTCACCC
1 CTCCATTGGCTCGCATGGCTCGTATATGCCTTGTATGGCTCGTATGTCACCC
422955 CTCCATTGGCTCGCATGGCTCGTATATGCCTTGTATGGCTCGTATGTCACCC
1 CTCCATTGGCTCGCATGGCTCGTATATGCCTTGTATGGCTCGTATGTCACCC
423007 C
1 C
423008 GTATGGCTCG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.13, C:0.31, G:0.23, T:0.32
Consensus pattern (52 bp):
CTCCATTGGCTCGCATGGCTCGTATATGCCTTGTATGGCTCGTATGTCACCC
Found at i:423013 original size:21 final size:21
Alignment explanation
Indices: 422987--423033 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
422977 TATATGCCTT
422987 GTATGGCTCGTATGTCACCCC
1 GTATGGCTCGTATGTCACCCC
423008 GTATGGCTCGTATGTCACCCC
1 GTATGGCTCGTATGTCACCCC
423029 GTATG
1 GTATG
423034 TCGCCTGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.15, C:0.30, G:0.26, T:0.30
Consensus pattern (21 bp):
GTATGGCTCGTATGTCACCCC
Found at i:423076 original size:29 final size:29
Alignment explanation
Indices: 423034--423093 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
423024 ACCCCGTATG
423034 TCGCCTGGATTGCATGGCGTCCTACAAGA
1 TCGCCTGGATTGCATGGCGTCCTACAAGA
*
423063 TCGCCTGGATTGCATGGCGTCCTACGAGA
1 TCGCCTGGATTGCATGGCGTCCTACAAGA
423092 TC
1 TC
423094 ACTGTAGAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.18, C:0.28, G:0.28, T:0.25
Consensus pattern (29 bp):
TCGCCTGGATTGCATGGCGTCCTACAAGA
Found at i:423287 original size:44 final size:44
Alignment explanation
Indices: 423227--423312 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
423217 AATGAGAAAA
*
423227 TATAATAAGTAGATGTATATTTTATTTTTTAAATTAAGTAATAT
1 TATAATAAGTAAATGTATATTTTATTTTTTAAATTAAGTAATAT
423271 TATAATAAGTAAATGTATATTTTATTTTTTAAATTAAGTAAT
1 TATAATAAGTAAATGTATATTTTATTTTTTAAATTAAGTAAT
423313 TTTTTATCGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (44 bp):
TATAATAAGTAAATGTATATTTTATTTTTTAAATTAAGTAATAT
Found at i:423528 original size:31 final size:31
Alignment explanation
Indices: 423493--423563 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
423483 GTCAGGGACT
*
423493 ATATTGTAAATAGACTAAATGTTGAGGGATC
1 ATATTGCAAATAGACTAAATGTTGAGGGATC
* * *
423524 ATATTGCAAATGGACTAAATGTTGGGGGATT
1 ATATTGCAAATAGACTAAATGTTGAGGGATC
423555 ATATTGCAA
1 ATATTGCAA
423564 GTTTTAAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (31 bp):
ATATTGCAAATAGACTAAATGTTGAGGGATC
Found at i:430922 original size:18 final size:18
Alignment explanation
Indices: 430899--430938 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
430889 ATCATCCCAA
430899 ATTTTAAAATTATTATAT
1 ATTTTAAAATTATTATAT
* * *
430917 ATTTTAGATTTTTTATAT
1 ATTTTAAAATTATTATAT
430935 ATTT
1 ATTT
430939 ATTGAAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
ATTTTAAAATTATTATAT
Found at i:431235 original size:12 final size:13
Alignment explanation
Indices: 431213--431237 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
431203 TCGGTTCAAA
431213 TTTGTTTTTTTTT
1 TTTGTTTTTTTTT
431226 TTTGTTTTTTTT
1 TTTGTTTTTTTT
431238 AAATAACTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (13 bp):
TTTGTTTTTTTTT
Found at i:432770 original size:15 final size:15
Alignment explanation
Indices: 432750--432791 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
432740 AAAGCGGTTT
*
432750 TTAAATTTTTTTAAA
1 TTAAATTTTTTAAAA
432765 TTAAATTTTATTAAAA
1 TTAAATTTT-TTAAAA
*
432781 TGAAATTTTTT
1 TTAAATTTTTT
432792 GGGTGATCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (15 bp):
TTAAATTTTTTAAAA
Found at i:435288 original size:2 final size:2
Alignment explanation
Indices: 435281--435317 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
435271 GAACAAATAA
435281 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
435318 TAACTGGTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:438004 original size:18 final size:18
Alignment explanation
Indices: 437983--438017 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
437973 TAAATAATAA
437983 TATTATTAAAAATATTAC
1 TATTATTAAAAATATTAC
* *
438001 TATTTTTTAAAATATTA
1 TATTATTAAAAATATTA
438018 GAATAATTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTATTAAAAATATTAC
Found at i:438350 original size:22 final size:20
Alignment explanation
Indices: 438319--438448 Score: 68
Period size: 21 Copynumber: 6.3 Consensus size: 20
438309 CTTTTATGAA
* *
438319 ATTAATAAATAATATTAATTTT
1 ATTAAAAAATAATA-T-ATATT
*
438341 ATTAAAAAATATTATATATT
1 ATTAAAAAATAATATATATT
* * *
438361 ATTAAAATAAAAGAAAAATATT
1 ATTAAAA-AATA-ATATATATT
* **
438383 A-TATATTATAATA-ATA-T
1 ATTAAAAAATAATATATATT
* * * *
438400 AATAAAATATATTACTATATC
1 ATTAAAAAATAATA-TATATT
438421 ATTAAAAAATAATATTATATT
1 ATTAAAAAATAATA-TATATT
438442 ATTAAAA
1 ATTAAAA
438449 TTATCAATAA
Statistics
Matches: 81, Mismatches: 21, Indels: 13
0.70 0.18 0.11
Matches are distributed among these distances:
17 2 0.02
18 12 0.15
19 2 0.02
20 16 0.20
21 30 0.37
22 19 0.23
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.41
Consensus pattern (20 bp):
ATTAAAAAATAATATATATT
Found at i:438351 original size:19 final size:20
Alignment explanation
Indices: 438319--438367 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
438309 CTTTTATGAA
* *
438319 ATTAATAAATAATATTA-AT
1 ATTATTAAAAAATATTATAT
*
438338 TTTATTAAAAAATATTATAT
1 ATTATTAAAAAATATTATAT
438358 ATTATTAAAA
1 ATTATTAAAA
438368 TAAAAGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTATTAAAAAATATTATAT
Found at i:438377 original size:29 final size:29
Alignment explanation
Indices: 438345--438427 Score: 105
Period size: 29 Copynumber: 2.8 Consensus size: 29
438335 AATTTTATTA
438345 AAAAATATTATATATTATTAAAATAAAAG
1 AAAAATATTATATATTATTAAAATAAAAG
* *
438374 AAAAATATTATATATTA-TAATAATATAAT
1 AAAAATATTATATATTATTAA-AATAAAAG
*
438403 AAAATATATTACTATATCATTAAAA
1 AAAA-ATATTA-TATATTATTAAAA
438428 AATAATATTA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
28 3 0.06
29 27 0.57
30 6 0.13
31 8 0.17
32 3 0.06
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.37
Consensus pattern (29 bp):
AAAAATATTATATATTATTAAAATAAAAG
Found at i:439229 original size:2 final size:2
Alignment explanation
Indices: 439222--439263 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
439212 AATTTCACAC
439222 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
439264 CACACACATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:445843 original size:20 final size:18
Alignment explanation
Indices: 445820--445861 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
445810 AGAATCAAAC
445820 AATTATAAAATTATCATTAA
1 AATTAT-AAATTATCA-TAA
*
445840 AATTATAAATTATTATAA
1 AATTATAAATTATCATAA
445858 AATT
1 AATT
445862 GTAACTAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.33
19 8 0.38
20 6 0.29
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (18 bp):
AATTATAAATTATCATAA
Found at i:446450 original size:60 final size:60
Alignment explanation
Indices: 446386--446502 Score: 182
Period size: 60 Copynumber: 1.9 Consensus size: 60
446376 ATTATTTGGG
* * * *
446386 GATGAAATTGGAATGTTTAAAAGTTTAATGACTAATTTAGAAT-AAGAGTCATAGTTTTGA
1 GATGAAATTGCAATGTTTAAAAGTTTAAGGACTAATTTAAAATGAA-AGCCATAGTTTTGA
446446 GATGAAATTGCAATGTTTAAAAGTTTAAGGACTAATTTAAAATGAAAGCCATAGTTT
1 GATGAAATTGCAATGTTTAAAAGTTTAAGGACTAATTTAAAATGAAAGCCATAGTTT
446503 GAGGACATTT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 50 0.96
61 2 0.04
ACGTcount: A:0.41, C:0.05, G:0.19, T:0.35
Consensus pattern (60 bp):
GATGAAATTGCAATGTTTAAAAGTTTAAGGACTAATTTAAAATGAAAGCCATAGTTTTGA
Found at i:453220 original size:27 final size:28
Alignment explanation
Indices: 453183--453239 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
453173 TTGTTTATTT
*
453183 ATTTGATAATC-TTGAATGTTTAGATTC
1 ATTTGAAAATCTTTGAATGTTTAGATTC
*
453210 ATTTGAAAATCTTTGAATGTTTTGATTC
1 ATTTGAAAATCTTTGAATGTTTAGATTC
453238 AT
1 AT
453240 AAATTTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 10 0.37
28 17 0.63
ACGTcount: A:0.30, C:0.07, G:0.14, T:0.49
Consensus pattern (28 bp):
ATTTGAAAATCTTTGAATGTTTAGATTC
Found at i:454866 original size:24 final size:24
Alignment explanation
Indices: 454813--454866 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
454803 CACCACTACT
* *
454813 CATATAATTTGCATCGAAGTGCCG
1 CATAGAATTTGCATCGAAGTGCCA
*
454837 CGTAGAATTTGCA-CTGAAGTGCCA
1 CATAGAATTTGCATC-GAAGTGCCA
454861 CATAGA
1 CATAGA
454867 TATGTCCTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (24 bp):
CATAGAATTTGCATCGAAGTGCCA
Found at i:454901 original size:24 final size:24
Alignment explanation
Indices: 454869--454938 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
454859 CACATAGATA
*
454869 TGTCCTGAAGGACCGCGTAGAATT
1 TGTCTTGAAGGACCGCGTAGAATT
* * *
454893 TGTCTTGAATGACCACATAGAATT
1 TGTCTTGAAGGACCGCGTAGAATT
*
454917 TGTCTCGAAGGACCGCGTAGAA
1 TGTCTTGAAGGACCGCGTAGAA
454939 CCCTCGACTC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (24 bp):
TGTCTTGAAGGACCGCGTAGAATT
Found at i:454909 original size:47 final size:48
Alignment explanation
Indices: 454826--454938 Score: 137
Period size: 47 Copynumber: 2.4 Consensus size: 48
454816 ATAATTTGCA
454826 TCGAAGTG-CCGCGTAGAATTTGCACTGAAGTGCCACATAG-ATATGTC
1 TCGAAG-GACCGCGTAGAATTTGCACTGAAGTGCCACATAGAATATGTC
* *
454873 -CTGAAGGACCGCGTAGAATTTGTC-TTGAA-TGACCACATAGAATTTGTC
1 TC-GAAGGACCGCGTAGAATTTG-CACTGAAGTG-CCACATAGAATATGTC
454921 TCGAAGGACCGCGTAGAA
1 TCGAAGGACCGCGTAGAA
454939 CCCTCGACTC
Statistics
Matches: 58, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
46 4 0.07
47 30 0.52
48 23 0.40
49 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (48 bp):
TCGAAGGACCGCGTAGAATTTGCACTGAAGTGCCACATAGAATATGTC
Found at i:458687 original size:33 final size:33
Alignment explanation
Indices: 458643--458720 Score: 102
Period size: 33 Copynumber: 2.4 Consensus size: 33
458633 CCCTTCCAAT
* **
458643 GGTTTCTATCATCTTTGATTAGTGCACCTCCAG
1 GGTTTCAATCATCTTCAATTAGTGCACCTCCAG
* *
458676 GGTTTCAATCATGTTCAATTGGTGCACCTCCAG
1 GGTTTCAATCATCTTCAATTAGTGCACCTCCAG
*
458709 GGCTTCAATCAT
1 GGTTTCAATCAT
458721 ATTCGGCTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (33 bp):
GGTTTCAATCATCTTCAATTAGTGCACCTCCAG
Found at i:459546 original size:18 final size:18
Alignment explanation
Indices: 459535--459569 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
459525 TGTCTCAAAT
459535 GACCACTTTGTCCCGAAA
1 GACCACTTTGTCCCGAAA
*
459553 GACCACTATGTCCCGAA
1 GACCACTTTGTCCCGAA
459570 GGACTACTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.20
Consensus pattern (18 bp):
GACCACTTTGTCCCGAAA
Found at i:460303 original size:20 final size:23
Alignment explanation
Indices: 460252--460307 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 23
460242 ACCCTTAACC
*
460252 TGGTATCGATA-CTACTATATTA
1 TGGTATCGATACCTACTACATTA
*
460274 TGGTACCGATACCTAC-ACA-T-
1 TGGTATCGATACCTACTACATTA
460294 TGGTATCGATACCT
1 TGGTATCGATACCT
460308 TATGAATGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 13 0.43
21 1 0.03
22 12 0.40
23 4 0.13
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (23 bp):
TGGTATCGATACCTACTACATTA
Found at i:461362 original size:25 final size:24
Alignment explanation
Indices: 461305--461367 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 24
461295 TGCTATGCCA
* *
461305 TAGTGGTCATTTTTTGTATGTGGC
1 TAGTGGTCATTTTTTGTATATAGC
461329 T--TGGT-ATTTTTTGTATATAGC
1 TAGTGGTCATTTTTTGTATATAGC
461350 TTAGTGGTCATTTTTTGT
1 -TAGTGGTCATTTTTTGT
461368 TAGTGGCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
21 14 0.42
22 5 0.15
24 5 0.15
25 9 0.27
ACGTcount: A:0.14, C:0.06, G:0.24, T:0.56
Consensus pattern (24 bp):
TAGTGGTCATTTTTTGTATATAGC
Found at i:461376 original size:25 final size:25
Alignment explanation
Indices: 461305--461379 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
461295 TGCTATGCCA
461305 TAGTGGTCATTTTTTG-TATGTGGC-
1 TAGTGGTCATTTTTTGTTA-GTGGCT
*
461329 T--TGGT-ATTTTTTGTATA-TAGCT
1 TAGTGGTCATTTTTTGT-TAGTGGCT
461351 TAGTGGTCATTTTTTGTTAGTGGCT
1 TAGTGGTCATTTTTTGTTAGTGGCT
461376 TAGT
1 TAGT
461380 CAGGTAAAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
21 11 0.26
22 5 0.12
23 2 0.05
24 7 0.17
25 17 0.40
ACGTcount: A:0.15, C:0.07, G:0.25, T:0.53
Consensus pattern (25 bp):
TAGTGGTCATTTTTTGTTAGTGGCT
Found at i:463319 original size:3 final size:3
Alignment explanation
Indices: 463311--463347 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
463301 TATTCACATA
463311 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
463348 GGAATGATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:469550 original size:13 final size:14
Alignment explanation
Indices: 469527--469556 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
469517 TTCCAATTAC
469527 AGACGTGCATATGA
1 AGACGTGCATATGA
469541 AGAC-TGCATATGA
1 AGACGTGCATATGA
469554 AGA
1 AGA
469557 TTGTTCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (14 bp):
AGACGTGCATATGA
Found at i:472771 original size:3 final size:3
Alignment explanation
Indices: 472763--472825 Score: 117
Period size: 3 Copynumber: 21.0 Consensus size: 3
472753 CGACTAACAA
*
472763 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
472811 AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT
472826 TTGTAAGAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:475141 original size:5 final size:5
Alignment explanation
Indices: 475133--475322 Score: 81
Period size: 5 Copynumber: 37.6 Consensus size: 5
475123 AGTGAAAATG
* * *
475133 ATAAA AT-AA ATAAC ATAAA ATAAA ATAAA ATAAA ATAAAAA ACAAA ACAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT--AAA ATAAA ATAAA
* * * * *
475184 ACAAC ATAAC ATAAG AT-AA ATAAA ATAAAA ATAAA ATAAGA A-AAA GAAAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA AT-AAA ATAAA ATAA-A ATAAA -ATAAA
* * * * * * *
475235 AGAAG ATTAA ATCAA ATAAA A-AGAA ACAAA A-AAA TTAAA TTAAA ATTTAAA
1 ATAAA ATAAA ATAAA ATAAA ATA-AA ATAAA ATAAA ATAAA ATAAA A--TAAA
* *
475286 A-AAA ACATAA ATAAA A-AGA A-AAA ATGAAA ATAAA ATA
1 ATAAA ATA-AA ATAAA ATAAA ATAAA AT-AAA ATAAA ATA
475323 TAAAAAAAGA
Statistics
Matches: 149, Mismatches: 19, Indels: 34
0.74 0.09 0.17
Matches are distributed among these distances:
4 22 0.15
5 98 0.66
6 20 0.13
7 9 0.06
ACGTcount: A:0.75, C:0.05, G:0.04, T:0.16
Consensus pattern (5 bp):
ATAAA
Found at i:475269 original size:23 final size:21
Alignment explanation
Indices: 475243--475319 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 21
475233 AAAGAAGATT
475243 AAATCAAATAAAAAGAAACAAAA
1 AAAT-AAATAAAAAGAAA-AAAA
**
475266 AAATTAAATTAAAATTTAAAAAAA
1 AAA-TAAA-TAAAA-AGAAAAAAA
*
475290 ACATAAATAAAAAGAAAAAATGA
1 AAATAAATAAAAAGAAAAAA--A
475313 AAATAAA
1 AAATAAA
475320 ATATAAAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
21 6 0.14
22 5 0.12
23 17 0.40
24 12 0.28
25 3 0.07
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.17
Consensus pattern (21 bp):
AAATAAATAAAAAGAAAAAAA
Found at i:475316 original size:19 final size:20
Alignment explanation
Indices: 475284--475334 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
475274 TTAAAATTTA
*
475284 AAAAAAACATAAATAAAA-AG
1 AAAAAAAGA-AAATAAAATAG
* *
475304 AAAAAATGAAAATAAAATAT
1 AAAAAAAGAAAATAAAATAG
475324 AAAAAAAGAAA
1 AAAAAAAGAAA
475335 TAACCCAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.80, C:0.02, G:0.06, T:0.12
Consensus pattern (20 bp):
AAAAAAAGAAAATAAAATAG
Found at i:477859 original size:85 final size:84
Alignment explanation
Indices: 477715--478373 Score: 739
Period size: 85 Copynumber: 7.8 Consensus size: 84
477705 GCCATCGAGA
* * * * * * ** * *
477715 TGAATGGAATCGAACTCGAAAGTTTTTATTGATAGATAGCTTTTCTCGACTTGAGTTATGCTGTA
1 TGAATGTAATCAAACTCG-AAGGTTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTA
* *
477780 AATTTGACATGCTCTTGAGC
65 AATTTGATATGCCCTTGAGC
** *
477800 TGAATGGT-ATCAAACTCGAAGGTATTTGTTGACAGATAACCCTTCTCGCCTTGAATTATGTTGT
1 TGAAT-GTAATCAAACTCGAAGGT-TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGT
* *
477864 AAATTCGATATGTCCTTGAGC
64 AAATTTGATATGCCCTTGAGC
* * *
477885 TGAATGTAATCAAACTCGAAGGTCTTTGTTGACAGATAGCCCTTTTCGCCTTGAGCTATGTTGTA
1 TGAATGTAATCAAACTCGAAGGT-TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTA
**
477950 AATTTGATATATCCTTGAGC
65 AATTTGATATGCCCTTGAGC
* * * * * ** *
477970 TTAATGTAATTATACTTGAAGGTTATGGTTGACAGATAACTTTTCTCGCCTTGAGCTATGTTGTA
1 TGAATGTAATCAAACTCGAAGGTT-TTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTA
478035 AATTTGATATGCCCTTGAGC
65 AATTTGATATGCCCTTGAGC
* * *
478055 TGAATGTGATCAAACTTGAAGG-TTTGTTGACAGATATCCCTTCTCGCCTTGAGCTATGCTGTAA
1 TGAATGTAATCAAACTCGAAGGTTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAA
* *
478119 ATTTGATATTCCCTTGAGT
66 ATTTGATATGCCCTTGAGC
* * * * ** *
478138 TGAATATAATCAAACTCAAAGG-TTTATTGACAGATAAACCTTCTCTTCTTAAGCTATGCTGTAA
1 TGAATGTAATCAAACTCGAAGGTTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAA
478202 ATTTGATATGCCCTTGAGC
66 ATTTGATATGCCCTTGAGC
* * * *
478221 TGAATGTAATCGAACTCTAAGGTTTTGGTTGACAGATAACCCTTCTCGTCTTGAGTTATGCTGTA
1 TGAATGTAATCAAACTCGAAGGTTTT-GTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTA
* *
478286 AATTTGATATGACCTTGAGT
65 AATTTGATATGCCCTTGAGC
* ** * * * *
478306 TGAATGAAATTGAACACGAAGGTTTTTGTTGACAAATAGCCCTTCTCGCCTTGAGCTATGCTGCA
1 TGAATGTAATCAAACTCGAAGG-TTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTA
478371 AAT
65 AAT
478374 AGTTCCTTTA
Statistics
Matches: 492, Mismatches: 75, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
83 143 0.29
84 11 0.02
85 333 0.68
86 5 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (84 bp):
TGAATGTAATCAAACTCGAAGGTTTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAA
ATTTGATATGCCCTTGAGC
Found at i:479796 original size:99 final size:98
Alignment explanation
Indices: 479616--479806 Score: 274
Period size: 99 Copynumber: 1.9 Consensus size: 98
479606 GGACAGCTCA
* * * * ** *
479616 ATATTATTATCATCTTTATCAGGCTAGTTGAATCTTTTCCACAAAGTTAGGCGTTTAACCAATTG
1 ATATTATAATCACCTTTATCAGGCTAGCTGAACCTTTTCCACAAAGCAAGGCATTTAACCAATTG
* *
479681 CTCTATAGGGATAGCTCAAGCTTTATTGTATAG
66 CTCTAGAGGGACAGCTCAAGCTTTATTGTATAG
* *
479714 ATATTATAATCACCTTTATCAGGCTAGCTGAACCTTTTCTATAAAGCCAAGGCATTTAACCAATT
1 ATATTATAATCACCTTTATCAGGCTAGCTGAACCTTTTCCACAAAG-CAAGGCATTTAACCAATT
479779 GCTCTAGAGGGACAGCTCAAGCTTTATT
65 GCTCTAGAGGGACAGCTCAAGCTTTATT
479807 ACATTTATAT
Statistics
Matches: 81, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
98 40 0.49
99 41 0.51
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (98 bp):
ATATTATAATCACCTTTATCAGGCTAGCTGAACCTTTTCCACAAAGCAAGGCATTTAACCAATTG
CTCTAGAGGGACAGCTCAAGCTTTATTGTATAG
Found at i:483387 original size:5 final size:5
Alignment explanation
Indices: 483370--483556 Score: 86
Period size: 5 Copynumber: 37.0 Consensus size: 5
483360 TAAAAAAATG
* * *
483370 ATAAA AT-AA ATAAC ATAAA ATAAA GTAAA ATAAA A-AACA AAATAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAA-A ATA-AA ATAAA
* * * * *
483420 AGAAA ATAAA ATACAA ATACAA ATAAA AGAAA ATTAA ATCAA ACAAA A-AGAA
1 ATAAA ATAAA ATA-AA ATA-AA ATAAA ATAAA ATAAA ATAAA ATAAA ATA-AA
* * * *
483472 ACAAA A-AAA TTAAA ATTAAA ATTAAA A-AAA CA-AAA ATATA A-AAT
1 ATAAA ATAAA ATAAA A-TAAA A-TAAA ATAAA -ATAAA ATAAA ATAAA
* *
483516 ATATAA ATAAA A-AAT ATAAA A-AATA ATAAA AAAGAA ATAAA
1 ATA-AA ATAAA ATAAA ATAAA ATAA-A ATAAA ATA-AA ATAAA
483557 CCAATAGGGA
Statistics
Matches: 142, Mismatches: 23, Indels: 34
0.71 0.12 0.17
Matches are distributed among these distances:
4 21 0.15
5 83 0.58
6 37 0.26
7 1 0.01
ACGTcount: A:0.75, C:0.04, G:0.03, T:0.18
Consensus pattern (5 bp):
ATAAA
Found at i:483389 original size:14 final size:15
Alignment explanation
Indices: 483370--483447 Score: 60
Period size: 14 Copynumber: 5.4 Consensus size: 15
483360 TAAAAAAATG
*
483370 ATAAAATAAA-TAAC
1 ATAAAATAAAGTAAA
483384 ATAAAATAAAGTAAA
1 ATAAAATAAAGTAAA
*
483399 AT-AAA-AAA-CAAA
1 ATAAAATAAAGTAAA
483411 AT-AAATAAAAG-AAA
1 ATAAAAT-AAAGTAAA
*
483425 ATAAAATACAAATACAA
1 ATAAAATA-AAGTA-AA
483442 ATAAAA
1 ATAAAA
483448 GAAAATTAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
12 8 0.15
13 3 0.06
14 22 0.42
15 11 0.21
16 1 0.02
17 8 0.15
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.17
Consensus pattern (15 bp):
ATAAAATAAAGTAAA
Found at i:483389 original size:24 final size:22
Alignment explanation
Indices: 483330--483416 Score: 59
Period size: 24 Copynumber: 3.7 Consensus size: 22
483320 AAGAAATATC
* **
483330 TAAATAACAAAAAAAT-TAATC
1 TAAAAAACAAAAAAATGTAAAA
*
483351 TCAAAAAAGTAAAAAAATGATAAAA
1 T-AAAAAA-CAAAAAAATG-TAAAA
* *
483376 TAAATAACATAAAATAAAGTAAAA
1 TAAAAAACA-AAAA-AATGTAAAA
483400 TAAAAAACAAAATAAAT
1 TAAAAAACAAAA-AAAT
483417 AAAAGAAAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
21 1 0.02
22 5 0.10
23 14 0.28
24 23 0.46
25 7 0.14
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.20
Consensus pattern (22 bp):
TAAAAAACAAAAAAATGTAAAA
Found at i:483425 original size:26 final size:26
Alignment explanation
Indices: 483387--483467 Score: 92
Period size: 26 Copynumber: 3.0 Consensus size: 26
483377 AAATAACATA
*
483387 AAAT-AAAGTAAAATAAAAAACAAAAT
1 AAATAAAAG-AAAATAAAAAACAAAAC
*
483413 AAATAAAAGAAAATAAAATACAAATAC
1 AAATAAAAGAAAATAAAAAACAAA-AC
483440 AAATAAAAGAAAATTAAATCAAACAAAA
1 AAATAAAAGAAAA-TAAA--AAACAAAA
483468 AGAAACAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
26 18 0.38
27 18 0.38
28 4 0.09
29 1 0.02
30 6 0.13
ACGTcount: A:0.75, C:0.06, G:0.04, T:0.15
Consensus pattern (26 bp):
AAATAAAAGAAAATAAAAAACAAAAC
Found at i:483430 original size:31 final size:31
Alignment explanation
Indices: 483372--483446 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
483362 AAAAAATGAT
* * *
483372 AAAATAAATAACATAAAATAAAGTAAAATA-A
1 AAAACAAATAA-ATAAAAGAAAATAAAATACA
483403 AAAACAAAATAAATAAAAGAAAATAAAATACA
1 AAAAC-AAATAAATAAAAGAAAATAAAATACA
*
483435 AATACAAATAAA
1 AAAACAAATAAA
483447 AGAAAATTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 27 0.71
32 11 0.29
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.16
Consensus pattern (31 bp):
AAAACAAATAAATAAAAGAAAATAAAATACA
Found at i:483458 original size:21 final size:21
Alignment explanation
Indices: 483397--483472 Score: 57
Period size: 21 Copynumber: 3.6 Consensus size: 21
483387 AAATAAAGTA
* *
483397 AAATAAAAAACAAAATAAATA-
1 AAATAAAAGA-AAATTAAATAC
* * *
483418 AAAGAAAATAAAATACAAATAC
1 AAATAAAAGAAAAT-TAAATAC
483440 AAATAAAAGAAAATTAAAT-C
1 AAATAAAAGAAAATTAAATAC
*
483460 AAACAAAAAGAAA
1 AAA-TAAAAGAAA
483473 CAAAAAAATT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
20 7 0.16
21 25 0.57
22 12 0.27
ACGTcount: A:0.76, C:0.07, G:0.04, T:0.13
Consensus pattern (21 bp):
AAATAAAAGAAAATTAAATAC
Found at i:483503 original size:29 final size:29
Alignment explanation
Indices: 483397--483538 Score: 83
Period size: 32 Copynumber: 4.6 Consensus size: 29
483387 AAATAAAGTA
* *
483397 AAAT-AAAAAACAAAATAAATAAAAGAAAAT
1 AAATAAAAAAACAAAA-AAATAAAA-TATAT
* * * *
483427 AAAATACAAATACAAATAAAAGAAAATTAAAT
1 -AAATAAAAAAACAAA-AAAATAAAA-TATAT
*
483459 CAAACAAAAAGAAACAAAAAAATTAAAAT-TA-
1 -AAA-TAAAA-AAACAAAAAAA-TAAAATATAT
*
483490 AAATTAAAAAAACAAAAATATAAAATATAT
1 AAA-TAAAAAAACAAAAAAATAAAATATAT
*
483520 AAATAAAAAATATAAAAAA
1 AAATAAAAAA-ACAAAAAA
483539 TAATAAAAAA
Statistics
Matches: 87, Mismatches: 16, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
28 6 0.07
29 19 0.22
30 16 0.18
31 4 0.05
32 23 0.26
33 9 0.10
34 10 0.11
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (29 bp):
AAATAAAAAAACAAAAAAATAAAATATAT
Found at i:483513 original size:22 final size:22
Alignment explanation
Indices: 483474--483554 Score: 76
Period size: 22 Copynumber: 3.6 Consensus size: 22
483464 AAAAAGAAAC
*
483474 AAAAAAATTAAAAT-TAAAAT-T
1 AAAAAAA-AAAAATATAAAATAT
483495 AAAAAAACAAAAATATAAAATAT
1 AAAAAAA-AAAAATATAAAATAT
* * *
483518 ATAAATAAAAAATATAAAAAAT
1 AAAAAAAAAAAATATAAAATAT
*
483540 AATAAAAAAGAAATA
1 AA-AAAAAAAAAATA
483555 AACCAATAGG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
21 12 0.24
22 21 0.43
23 16 0.33
ACGTcount: A:0.77, C:0.01, G:0.01, T:0.21
Consensus pattern (22 bp):
AAAAAAAAAAAATATAAAATAT
Found at i:483547 original size:9 final size:8
Alignment explanation
Indices: 483489--483547 Score: 52
Period size: 7 Copynumber: 7.5 Consensus size: 8
483479 AATTAAAATT
483489 AAAAT-TA
1 AAAATATA
* *
483496 AAAAAACA
1 AAAATATA
483504 AAAATAT-
1 AAAATATA
483511 AAAATATA
1 AAAATATA
*
483519 TAAATA-A
1 AAAATATA
483526 AAAATATAA
1 AAAATAT-A
483535 AAAATAATA
1 AAAAT-ATA
483544 AAAA
1 AAAA
483548 AGAAATAAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
7 17 0.41
8 11 0.27
9 11 0.27
10 2 0.05
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (8 bp):
AAAATATA
Found at i:483554 original size:11 final size:10
Alignment explanation
Indices: 483384--483556 Score: 55
Period size: 11 Copynumber: 16.5 Consensus size: 10
483374 AATAAATAAC
*
483384 ATAAAATAAA
1 ATAAAAAAAA
*
483394 GTAAAATAAAA
1 ATAAAA-AAAA
*
483405 A-ACAAAATAA
1 ATA-AAAAAAA
*
483415 ATAAAAGAAA
1 ATAAAAAAAA
*
483425 ATAAAATACAA
1 ATAAAA-AAAA
*
483436 ATACAAATAAA
1 ATA-AAAAAAA
* **
483447 AGAAAATTAA
1 ATAAAAAAAA
*
483457 ATCAAACAAAA
1 AT-AAAAAAAA
* *
483468 AGAAACAAAA
1 ATAAAAAAAA
**
483478 A-AATTAAAA
1 ATAAAAAAAA
* *
483487 TTAAAATTAAA
1 ATAAAA-AAAA
*
483498 A-AAACAAAA
1 ATAAAAAAAA
* *
483507 ATATAAAATAT
1 ATA-AAAAAAA
483518 ATAAATAAAAA
1 ATAAA-AAAAA
483529 ATATAAAAAATA
1 ATA-AAAAAA-A
483541 ATAAAAAAGAA
1 ATAAAAAA-AA
483552 ATAAA
1 ATAAA
483557 CCAATAGGGA
Statistics
Matches: 118, Mismatches: 31, Indels: 27
0.67 0.18 0.15
Matches are distributed among these distances:
9 10 0.08
10 45 0.38
11 53 0.45
12 10 0.08
ACGTcount: A:0.76, C:0.04, G:0.03, T:0.17
Consensus pattern (10 bp):
ATAAAAAAAA
Found at i:485015 original size:2 final size:2
Alignment explanation
Indices: 485008--485034 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
484998 CTAAATAAAG
485008 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
485035 CACACATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:488043 original size:26 final size:25
Alignment explanation
Indices: 488005--488065 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 25
487995 GTAAGACTTT
* *
488005 TTATTATAATTAAAATATTATTAGTA
1 TTATTATATTTAAAAAATTA-TAGTA
* *
488031 TTTTTATATTTAAAAAATTATATTA
1 TTATTATATTTAAAAAATTATAGTA
488056 TTATTATATT
1 TTATTATATT
488066 ATGCCCACCT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 13 0.43
26 17 0.57
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
TTATTATATTTAAAAAATTATAGTA
Found at i:495068 original size:29 final size:28
Alignment explanation
Indices: 495022--495080 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 28
495012 ATTCAAAAAA
*
495022 AATAATAAAAAATATTTTAATTAAAATT
1 AATAATAAAAAAAATTTTAATTAAAATT
* * *
495050 AATAGTAAAATAAAATTTTAGTTACAATT
1 AATAATAAAA-AAAATTTTAATTAAAATT
495079 AA
1 AA
495081 AGGGTCAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (28 bp):
AATAATAAAAAAAATTTTAATTAAAATT
Found at i:500777 original size:18 final size:17
Alignment explanation
Indices: 500754--500787 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
500744 AAGTAAATTA
*
500754 TATATATAATTTCTAAAC
1 TATATAAAATTT-TAAAC
500772 TATATAAAATTTTAAA
1 TATATAAAATTTTAAA
500788 TTAAATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
TATATAAAATTTTAAAC
Found at i:500819 original size:30 final size:30
Alignment explanation
Indices: 500769--500845 Score: 92
Period size: 25 Copynumber: 2.7 Consensus size: 30
500759 ATAATTTCTA
* **
500769 AACTATATAAAATTTTAAATTAAATTATTT
1 AACTATAAAAAATTACAAATTAAATTATTT
500799 AACTATAAAAAATTAC-----AAATTATTT
1 AACTATAAAAAATTACAAATTAAATTATTT
500824 AACTATAAAAAATTACAAATTA
1 AACTATAAAAAATTACAAATTA
500846 TTTACTCAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
25 25 0.64
30 14 0.36
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (30 bp):
AACTATAAAAAATTACAAATTAAATTATTT
Found at i:500821 original size:25 final size:25
Alignment explanation
Indices: 500790--500849 Score: 120
Period size: 25 Copynumber: 2.4 Consensus size: 25
500780 ATTTTAAATT
500790 AAATTATTTAACTATAAAAAATTAC
1 AAATTATTTAACTATAAAAAATTAC
500815 AAATTATTTAACTATAAAAAATTAC
1 AAATTATTTAACTATAAAAAATTAC
500840 AAATTATTTA
1 AAATTATTTA
500850 CTCAATTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (25 bp):
AAATTATTTAACTATAAAAAATTAC
Found at i:501154 original size:31 final size:31
Alignment explanation
Indices: 501118--501177 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
501108 AACTTAGAAG
* *
501118 AGTTTTGCAATACT-AAGGTTTAAATAATTTT
1 AGTTTTACAATACTGAA-ATTTAAATAATTTT
501149 AGTTTTACAATACTGAAATTTAAATAATT
1 AGTTTTACAATACTGAAATTTAAATAATT
501178 CATATAACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:501684 original size:20 final size:19
Alignment explanation
Indices: 501630--501684 Score: 51
Period size: 19 Copynumber: 2.8 Consensus size: 19
501620 TATTTAAACT
501630 TAAATCAAAATAA-TTAAAA
1 TAAAT-AAAATAATTTAAAA
*
501649 TAAATATAAA-ATTTTAATAA
1 TAAATA-AAATAATTTAA-AA
*
501669 TAGATAAAATAATTTA
1 TAAATAAAATAATTTA
501685 TATGATATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
18 2 0.07
19 15 0.52
20 12 0.41
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
TAAATAAAATAATTTAAAA
Found at i:501784 original size:65 final size:63
Alignment explanation
Indices: 501692--501844 Score: 247
Period size: 63 Copynumber: 2.4 Consensus size: 63
501682 TTATATGATA
501692 TAAAATTAAATATCTATAATATAATATTAAAAAATTAATATTTAATTTATTTAAAAAAATTAATA
1 TAAAATT-AATATCTATAATATAATATT-AAAAATTAATATTTAATTTATTT-AAAAAATTAATA
501757 T
63 T
*
501758 TAAAATTAATATTTATAATATAATATTAAAAATTAATATTTAATTTATTTAAAAAATTAATAT
1 TAAAATTAATATCTATAATATAATATTAAAAATTAATATTTAATTTATTTAAAAAATTAATAT
*
501821 TAAAATTAAAATC-A-AATATAATAT
1 TAAAATTAATATCTATAATATAATAT
501845 AATATAAAAT
Statistics
Matches: 84, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
61 10 0.12
62 1 0.01
63 24 0.29
64 23 0.27
65 19 0.23
66 7 0.08
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (63 bp):
TAAAATTAATATCTATAATATAATATTAAAAATTAATATTTAATTTATTTAAAAAATTAATAT
Found at i:501817 original size:24 final size:26
Alignment explanation
Indices: 501752--501822 Score: 87
Period size: 24 Copynumber: 2.8 Consensus size: 26
501742 TTAAAAAAAT
501752 TAATATT-AAAATTAATATTTATAATA
1 TAATATTAAAAATTAATA-TTATAATA
501778 TAATATTAAAAATTAATATT-TAAT-
1 TAATATTAAAAATTAATATTATAATA
*
501802 TTAT-TTAAAAAATTAATATTA
1 TAATATT-AAAAATTAATATTA
501823 AAATTAAAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
23 2 0.05
24 16 0.39
25 4 0.10
26 9 0.22
27 10 0.24
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
TAATATTAAAAATTAATATTATAATA
Found at i:501854 original size:64 final size:65
Alignment explanation
Indices: 501692--501857 Score: 218
Period size: 64 Copynumber: 2.6 Consensus size: 65
501682 TTATATGATA
*
501692 TAAAATTAAATATCTATAATATAATAT--TAAAAAATTAATATTTAATTTATTTAAAAAAATTAA
1 TAAAATTAAA-ATC-A-AATATAATATAATATAAAATTAATATTTAATTTATTTAAAAAAATTAA
501755 TAT
63 TAT
**
501758 TAAAATT--AAT-ATTTATAATATAATATTAAAAATTAATATTTAATTTATTT-AAAAAATTAAT
1 TAAAATTAAAATCAAATATAATATAATA-T-AAAATTAATATTTAATTTATTTAAAAAAATTAAT
501819 AT
64 AT
501821 TAAAATTAAAATCAAATATAATATAATATAAAATTAA
1 TAAAATTAAAATCAAATATAATATAATATAAAATTAA
501858 ATATAAAACC
Statistics
Matches: 88, Mismatches: 5, Indels: 16
0.81 0.05 0.15
Matches are distributed among these distances:
60 8 0.09
61 1 0.01
62 2 0.02
63 22 0.25
64 31 0.35
65 4 0.05
66 20 0.23
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (65 bp):
TAAAATTAAAATCAAATATAATATAATATAAAATTAATATTTAATTTATTTAAAAAAATTAATAT
Found at i:502465 original size:38 final size:38
Alignment explanation
Indices: 502382--502478 Score: 117
Period size: 38 Copynumber: 2.6 Consensus size: 38
502372 GATCAGAGTC
502382 GGGTGGAGGATATAT-ATTTTTCGGATCGAATCGGTTT
1 GGGTGGAGGATATATAATTTTTCGGATCGAATCGGTTT
* ** *
502419 TGACGGAGGATATATAATTTTTCGG-TCGTATCGAGTTT
1 GGGTGGAGGATATATAATTTTTCGGATCGAATCG-GTTT
* *
502457 GGGTGGAGGATACATATTTTTT
1 GGGTGGAGGATATATAATTTTT
502479 TAGTCGAGTT
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
37 19 0.39
38 30 0.61
ACGTcount: A:0.23, C:0.08, G:0.30, T:0.39
Consensus pattern (38 bp):
GGGTGGAGGATATATAATTTTTCGGATCGAATCGGTTT
Found at i:505699 original size:13 final size:13
Alignment explanation
Indices: 505681--505713 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
505671 CAAGTGTACT
505681 TAGCTTGTATTTA
1 TAGCTTGTATTTA
505694 TAGCTTGTATTTA
1 TAGCTTGTATTTA
505707 TAGCTTG
1 TAGCTTG
505714 AAATGTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.21, C:0.09, G:0.18, T:0.52
Consensus pattern (13 bp):
TAGCTTGTATTTA
Found at i:505971 original size:20 final size:19
Alignment explanation
Indices: 505885--505975 Score: 57
Period size: 20 Copynumber: 4.9 Consensus size: 19
505875 GTTGCAGCCT
* *
505885 TGATGCATGGATGCATGGCA
1 TGATGCATCGATGCATTG-A
* *
505905 GGATGCATCGATGCACT-A
1 TGATGCATCGATGCATTGA
* *
505923 AG-TGCATTCGATG-TTTGA
1 TGATGCA-TCGATGCATTGA
*
505941 -G-TGCATGGATGCATTGCA
1 TGATGCATCGATGCATTG-A
505959 TGATGCATCGATGCATT
1 TGATGCATCGATGCATT
505976 AGTGCAGGTG
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
16 5 0.09
17 13 0.24
18 10 0.18
19 1 0.02
20 26 0.47
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (19 bp):
TGATGCATCGATGCATTGA
Found at i:506061 original size:21 final size:21
Alignment explanation
Indices: 505987--506060 Score: 105
Period size: 21 Copynumber: 3.5 Consensus size: 21
505977 GTGCAGGTGC
*
505987 ATGGATGCACTGCAGGGATGT
1 ATGGATGCACTGCAGGGATGA
506008 ATGGATGCACTGCAGGGAT-A
1 ATGGATGCACTGCAGGGATGA
* *
506028 CATGGATACACTTCAGGGATGA
1 -ATGGATGCACTGCAGGGATGA
506050 ATGGATGCACT
1 ATGGATGCACT
506061 TTGACACCCT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
21 46 0.98
22 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.23
Consensus pattern (21 bp):
ATGGATGCACTGCAGGGATGA
Found at i:506161 original size:29 final size:29
Alignment explanation
Indices: 506140--506197 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
506130 AAACTTTGAA
506140 TAAATTCAATT-AAGTCCAAAAACATTTTG
1 TAAATTCAATTCAAGTCCAAAAACA-TTTG
506169 TAAATTCAATTCAAGTCCAAAAACCATTT
1 TAAATTCAATTCAAGTCCAAAAA-CATTT
506198 TGCCTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 11 0.41
30 14 0.52
31 2 0.07
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (29 bp):
TAAATTCAATTCAAGTCCAAAAACATTTG
Found at i:506187 original size:30 final size:30
Alignment explanation
Indices: 506140--506199 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
506130 AAACTTTGAA
506140 TAAATTCAATTAAGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
506169 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
506200 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:509479 original size:20 final size:19
Alignment explanation
Indices: 509454--509625 Score: 88
Period size: 20 Copynumber: 8.7 Consensus size: 19
509444 TTGTAGCCTT
509454 GATGCATGGATGCATGGCAG
1 GATGCATGGATGCAT-GCAG
* *
509474 GATGCATCGATGCATGGATG
1 GATGCATGGATGCATGCA-G
* *
509494 GATGCATCGATGCA--CTAA
1 GATGCATGGATGCATGC-AG
* **
509512 G-TGCATTCGATGTTTG-A-
1 GATGCA-TGGATGCATGCAG
*
509529 G-TGCATGGATGCATTGCAT
1 GATGCATGGATGCA-TGCAG
*
509548 GATGCATCGATGCATTAGTGCAG
1 GATGCATGGATGC---A-TGCAG
509571 G-TGCATGGATGCACTGCAGG
1 GATGCATGGATGCA-TGCA-G
509591 GATGCATGGATGCACTGCAGG
1 GATGCATGGATGCA-TGCA-G
*
509612 GATACATGGATGCA
1 GATGCATGGATGCA
509626 CTTTGACACC
Statistics
Matches: 123, Mismatches: 15, Indels: 27
0.75 0.09 0.16
Matches are distributed among these distances:
16 5 0.04
17 11 0.09
18 9 0.07
19 9 0.07
20 41 0.33
21 32 0.26
22 10 0.08
23 6 0.05
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (19 bp):
GATGCATGGATGCATGCAG
Found at i:509598 original size:21 final size:20
Alignment explanation
Indices: 509530--509627 Score: 99
Period size: 21 Copynumber: 4.7 Consensus size: 20
509520 GATGTTTGAG
* *
509530 TGCATGGATGCATTGCATGA
1 TGCATGGATGCACTGCAGGA
* *
509550 TGCATCGATGCATTAGTGCAGG-
1 TGCATGGATGC---ACTGCAGGA
509572 TGCATGGATGCACTGCAGGGA
1 TGCATGGATGCACTGCA-GGA
509593 TGCATGGATGCACTGCAGGGA
1 TGCATGGATGCACTGCA-GGA
*
509614 TACATGGATGCACT
1 TGCATGGATGCACT
509628 TTGACACCCT
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.07
20 12 0.18
21 34 0.51
22 10 0.15
23 6 0.09
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.24
Consensus pattern (20 bp):
TGCATGGATGCACTGCAGGA
Found at i:509754 original size:30 final size:30
Alignment explanation
Indices: 509710--509766 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
509700 CTTTGAATAT
509710 ATTCAATTAAGTCCAAAAA-CATTTTGTAA
1 ATTCAATTAAGTCCAAAAACCATTTTGTAA
509739 ATTCAATTCAAGTCCAAAAACCATTTTG
1 ATTCAATT-AAGTCCAAAAACCATTTTG
509767 CCTTAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 8 0.31
30 11 0.42
31 7 0.27
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (30 bp):
ATTCAATTAAGTCCAAAAACCATTTTGTAA
Found at i:515716 original size:10 final size:10
Alignment explanation
Indices: 515687--515717 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
515677 CGGCGGGAAG
*
515687 TTCGTTTATG
1 TTCGTTTATT
515697 TTCGTTTATT
1 TTCGTTTATT
515707 TTCGTTTATT
1 TTCGTTTATT
515717 T
1 T
515718 ATTAAATGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.10, G:0.13, T:0.68
Consensus pattern (10 bp):
TTCGTTTATT
Done.