genome.fa.s8614.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008614.1 Hibiscus syriacus cultivar Beakdansim tig00111571_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86278

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1740--1769	16	1.9	15	93	6	51	40	20	10	30	1.85
3416--3593	93	1.9	93	83	4	234	37	19	19	23	1.95
5428--5545	15	7.5	15	76	14	121	46	1	2	49	1.25
5490--5590	22	4.5	22	70	7	85	40	0	8	50	1.34
5443--5600	69	2.3	66	86	10	214	43	1	5	49	1.34
5525--6079	54	10.1	54	73	17	441	33	0	13	52	1.43
5570--5676	32	3.7	32	74	23	135	34	0	12	53	1.38
5602--5644	22	2.0	22	95	0	77	34	0	11	53	1.37
5647--5694	22	2.4	18	73	23	51	33	0	14	52	1.42
5703--5788	32	2.7	32	94	0	154	32	0	12	54	1.38
5525--6160	112	5.5	115	81	12	578	33	0	13	52	1.43
5734--5944	80	2.7	75	89	4	305	32	0	14	51	1.49
5815--6062	32	8.7	32	77	20	268	33	0	13	52	1.44
5848--5912	22	3.0	22	93	0	112	33	1	13	50	1.51
5956--5998	22	2.0	22	100	0	86	34	0	13	51	1.42
6122--6164	22	2.0	22	100	0	86	34	0	13	51	1.42
6189--6247	31	1.9	31	92	0	100	42	10	6	40	1.65
7512--7575	26	2.5	26	94	2	112	21	12	3	62	1.43
10536--10614	20	3.9	20	86	1	104	48	11	18	21	1.80
10524--10615	40	2.3	40	79	3	105	48	14	17	19	1.80
13659--13803	72	2.0	71	80	10	161	53	10	7	28	1.62
16276--16342	26	2.6	26	97	0	125	19	31	25	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28308--28359	14	3.8	13	79	20	54	76	0	9	13	1.01
29346--29959	55	11.3	55	82	7	634	31	16	25	26	1.97
29697--29858	53	3.1	51	81	10	200	32	19	24	22	1.97
31529--31595	26	2.6	26	97	0	125	19	31	25	23	1.98
35673--35816	15	9.0	15	74	15	128	46	1	3	48	1.27
35793--35835	22	2.0	22	90	0	68	39	0	9	51	1.34
35688--35845	69	2.3	66	87	10	223	44	1	5	49	1.32
35770--36397	54	11.4	54	75	13	523	34	0	13	52	1.42
35815--35921	32	3.7	32	76	23	144	34	0	13	52	1.40
35847--35889	22	2.0	22	100	0	86	34	0	13	51	1.42
35948--36285	32	10.7	32	74	17	289	33	0	13	52	1.43
35815--36397	166	3.5	171	87	6	835	33	0	13	52	1.43
36093--36135	22	2.0	22	100	0	86	34	0	13	51	1.42
36179--36221	22	2.0	22	100	0	86	34	0	13	51	1.42
36345--36387	22	2.0	22	100	0	86	34	0	13	51	1.42
36412--36470	31	1.9	31	92	0	100	42	10	6	40	1.65
37739--37802	26	2.5	26	94	2	112	21	12	3	62	1.43
42487--42513	4	6.8	4	100	0	54	25	0	0	74	0.83
42730--42765	2	18.0	2	100	0	72	50	0	0	50	1.00
54531--55801	430	3.0	430	98	1	2431	35	8	13	43	1.74
66538--66588	26	2.0	26	100	0	102	39	7	3	49	1.51
68476--68563	40	2.2	40	82	8	99	29	19	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68511--68563	20	2.7	20	69	0	52	35	16	13	33	1.88
69543--69575	2	16.5	2	100	0	66	48	0	51	0	1.00
70017--70047	16	1.9	16	100	0	62	58	22	12	6	1.58
70112--70170	16	3.7	16	88	0	82	55	18	13	11	1.68
70413--70455	12	3.7	12	81	12	54	25	23	20	30	1.99
71302--71361	24	2.5	24	89	5	86	56	15	11	16	1.67
71802--71915	13	9.2	13	68	23	68	45	0	0	53	1.06
71770--71936	63	2.6	62	89	5	246	42	0	1	55	1.10
71897--71947	26	1.9	27	88	4	77	41	1	1	54	1.22
71925--71978	17	3.3	16	75	10	56	31	1	0	66	1.02
72221--72268	25	2.0	24	84	12	62	62	2	2	33	1.18
72445--72504	31	1.9	31	96	0	111	43	8	6	41	1.61
74528--74612	42	2.0	42	100	0	170	34	16	2	47	1.60
83236--83296	30	2.0	30	100	0	122	27	0	29	42	1.56

Tables:   1

The End!