genome.fa.s8615.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008615.1 Hibiscus syriacus cultivar Beakdansim tig00111572_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61357

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958--1011	24	2.2	24	93	0	90	40	20	18	20	1.91
958--1025	24	2.8	24	84	0	64	38	20	17	23	1.93
1931--1979	20	2.5	19	83	3	53	36	12	16	34	1.86
1950--1987	19	2.0	19	100	0	76	36	10	15	36	1.82
1982--2058	40	1.9	40	82	10	95	22	18	22	37	1.94
1963--2074	58	1.9	58	82	8	138	23	16	22	38	1.93
1991--2191	20	10.4	20	82	10	231	17	12	25	44	1.84
1991--2171	78	2.3	78	85	6	235	17	12	25	44	1.84
2227--2293	21	3.2	21	89	0	107	37	17	23	20	1.94
3730--3851	41	3.0	41	95	1	210	29	15	14	40	1.87
7151--7216	33	2.0	33	93	0	114	30	21	24	24	1.99
7613--7783	46	3.8	45	91	3	256	32	21	7	38	1.82
7864--7944	40	2.0	40	85	4	110	27	24	22	25	2.00
19024--19149	31	4.2	31	81	7	100	34	24	18	23	1.96
19064--19149	31	2.8	31	85	1	102	34	23	17	24	1.96
19076--19171	31	3.1	31	78	3	104	36	20	16	26	1.94
20352--20512	64	2.5	62	84	8	189	26	21	18	34	1.96
21906--21949	21	2.1	21	84	12	56	61	0	18	20	1.35
24793--24859	31	2.2	31	86	0	89	35	20	8	34	1.84
28137--28176	20	2.0	20	90	0	62	20	15	20	45	1.86
28221--28266	12	3.6	12	81	16	56	45	17	19	17	1.85
28227--28267	12	3.1	13	80	19	57	46	14	17	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30561--30600	21	1.9	21	94	0	71	30	15	7	47	1.72
30595--30693	33	3.0	33	94	1	164	32	7	15	45	1.73
30679--30733	13	4.2	13	75	13	58	34	3	12	49	1.59
31127--31182	15	3.6	15	79	9	67	32	12	12	42	1.80
31146--31179	18	1.9	18	94	5	61	38	11	11	38	1.79
31273--31304	16	2.0	17	88	11	50	43	21	21	12	1.86
31788--31865	31	2.5	31	85	0	111	39	11	8	39	1.73
32277--32417	40	3.4	41	81	4	151	29	16	14	39	1.88
33177--33254	19	3.9	20	77	14	72	30	11	29	28	1.92
34087--34156	21	3.3	21	91	0	104	21	15	28	34	1.94
34138--34209	21	3.3	21	73	21	67	23	22	26	27	1.99
34130--34215	44	2.0	44	92	0	145	24	19	26	29	1.99
36342--36383	21	2.0	21	95	0	75	26	28	21	23	1.99
41690--41770	20	3.9	20	75	9	63	14	23	34	27	1.94
45388--45431	21	2.2	20	84	12	54	22	15	9	52	1.71
45389--45433	20	2.2	20	84	7	56	24	15	11	48	1.77
45544--45586	21	2.0	21	82	13	52	34	11	2	51	1.51
52869--52954	44	2.0	44	95	0	154	22	22	27	27	1.99
52863--52948	21	4.0	21	76	19	79	22	22	27	27	1.99
53027--53059	17	1.9	17	93	0	57	42	12	21	24	1.86
53619--53712	40	2.3	41	88	1	136	31	17	15	35	1.91
56319--56377	21	2.8	21	92	0	91	22	6	20	50	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56692--56795	41	2.5	41	79	3	102	35	20	14	29	1.92
60456--60508	21	2.5	21	93	0	88	30	32	20	16	1.95
60530--60600	21	3.4	20	74	16	72	18	18	25	38	1.93
60697--60728	6	5.5	6	92	7	57	34	50	15	0	1.45

Tables:   1

The End!