genome.fa.s8618.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008618.1 Hibiscus syriacus cultivar Beakdansim tig00111576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85714

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1961--2069	35	3.1	35	85	7	150	32	4	19	44	1.71
5054--5111	21	2.8	20	73	5	53	6	24	39	29	1.81
16306--16358	27	2.0	26	82	10	63	13	52	3	30	1.57
20760--20809	24	2.1	24	100	0	100	28	16	16	40	1.89
21035--21095	30	2.0	30	83	0	77	14	32	19	32	1.92
26081--26191	14	7.9	14	68	13	57	45	27	0	27	1.54
26088--26190	21	4.9	21	74	11	77	45	26	0	28	1.54
26117--26224	56	1.9	56	92	0	180	45	25	0	28	1.54
26152--26231	35	2.3	35	76	6	83	46	28	0	25	1.53
26172--26265	41	2.3	41	81	9	111	46	25	0	27	1.53
26673--26702	14	2.1	14	93	0	51	43	0	6	50	1.28
26795--26845	5	9.4	5	87	8	66	17	23	35	23	1.95
26795--26845	22	2.3	22	100	0	102	17	23	35	23	1.95
26794--26843	17	3.0	16	91	5	73	18	24	36	22	1.95
28038--28081	18	2.4	18	96	0	79	22	2	29	45	1.65
37009--37048	20	2.0	20	100	0	80	60	0	5	35	1.19
39531--39565	18	1.9	18	88	0	52	28	17	0	54	1.43
40666--40730	8	8.4	8	76	17	66	21	24	38	15	1.92
40672--40748	13	5.3	13	78	18	73	19	22	42	15	1.88
40697--40731	18	1.9	18	94	0	61	17	22	42	17	1.88
40686--40752	31	2.2	31	91	0	107	16	20	46	16	1.84
44509--44543	18	1.9	18	88	0	52	28	17	0	54	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45645--45684	7	5.4	7	94	5	62	25	27	32	15	1.95
45645--45715	8	9.4	8	75	18	64	22	25	36	15	1.93
45645--45684	15	2.7	14	88	11	62	25	27	32	15	1.95
45682--45716	18	1.9	18	94	0	61	17	22	42	17	1.88
45658--45733	13	5.3	13	75	21	64	19	22	42	15	1.89
49496--49530	18	1.9	18	88	0	52	28	17	0	54	1.43
50631--50703	8	9.4	8	78	15	82	21	24	38	15	1.92
50643--50721	13	5.5	13	78	18	77	18	22	43	15	1.88
50670--50704	18	1.9	18	94	0	61	17	22	42	17	1.88
50643--50725	31	2.7	31	87	3	116	18	21	44	15	1.86
54479--54513	18	1.9	18	88	0	52	28	17	0	54	1.43
55613--55685	8	9.4	8	78	15	82	21	24	38	15	1.92
55625--55703	13	5.5	13	78	18	77	18	22	43	15	1.88
55652--55686	18	1.9	18	94	0	61	17	22	42	17	1.88
55625--55707	31	2.7	31	87	3	116	18	21	44	15	1.86
59409--59443	18	1.9	18	88	0	52	28	17	0	54	1.43
60545--60619	13	5.3	13	80	16	87	18	21	44	16	1.87
60568--60602	18	1.9	18	94	0	61	17	22	42	17	1.88
60558--60623	31	2.1	31	91	0	105	16	19	46	16	1.84
72873--72931	23	2.6	23	83	2	75	28	15	23	32	1.95
72896--73020	55	2.2	55	83	9	144	26	16	23	33	1.96

Tables:   1

The End!