Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008620.1 Hibiscus syriacus cultivar Beakdansim tig00111582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13158977
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 23 of 64
Found at i:4566649 original size:62 final size:62
Alignment explanation
Indices: 4566579--4566906 Score: 362
Period size: 62 Copynumber: 5.3 Consensus size: 62
4566569 ATTGGCACAT
* *
4566579 CTCGTGAAGAGAAGTCAACCTTT-TCTATTACTGACTCCTCAGTAGAGTCAATCCTTGGCTTC
1 CTCGTGAAGAGAAGTCAACCTTTGT-TATTTCTGACTCCTCAGTAGAGTCAATCCTTGACTTC
* * *
4566641 TTCGTGAAGAGAAGTCAATCTTTATT-TTTCTGACTCCTCAGTAGAGTCAATCCTTTGACTTC
1 CTCGTGAAGAGAAGTCAACCTTTGTTATTTCTGACTCCTCAGTAGAGTCAATCC-TTGACTTC
* * ** * *
4566703 CTAGTAAAGAGAAGTCAACCTTTGTTATCCCTGACTCC-CTAGTATAGTCAAACCTTGACTTC
1 CTCGTGAAGAGAAGTCAACCTTTGTTATTTCTGACTCCTC-AGTAGAGTCAATCCTTGACTTC
4566765 CTCGTGAAGAGAAGTCAACCTTTGTTATTT-TAGACTACC-CAGTAGAGTCAATCCTTGACTTC
1 CTCGTGAAGAGAAGTCAACCTTTGTTATTTCT-GACT-CCTCAGTAGAGTCAATCCTTGACTTC
* * * ** * * * *
4566827 CTCATTAAGTGAAGTCAATATTTCTTATTTTTGATTCCAT-AGTAGAGTCAATCATTGACTTC
1 CTCGTGAAGAGAAGTCAACCTTTGTTATTTCTGACTCC-TCAGTAGAGTCAATCCTTGACTTC
* *
4566889 CTCATAAAGAGAAGTCAA
1 CTCGTGAAGAGAAGTCAA
4566907 TATTGTAGAT
Statistics
Matches: 228, Mismatches: 29, Indels: 18
0.83 0.11 0.07
Matches are distributed among these distances:
61 29 0.13
62 173 0.76
63 26 0.11
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (62 bp):
CTCGTGAAGAGAAGTCAACCTTTGTTATTTCTGACTCCTCAGTAGAGTCAATCCTTGACTTC
Found at i:4567122 original size:36 final size:36
Alignment explanation
Indices: 4567075--4567484 Score: 554
Period size: 36 Copynumber: 11.4 Consensus size: 36
4567065 CAAAGAAGCT
* * *
4567075 AAGCAAATCAATTTAAGCTTTCATGGAAGAGTAGTG
1 AAGCAAATCAATCTAAGCCTTCACGGAAGAGTAGTG
*
4567111 AAGCAAATCAATCTAAGCCTTCACGGAAGAGTAGCG
1 AAGCAAATCAATCTAAGCCTTCACGGAAGAGTAGTG
* * *
4567147 AAGCAAATCAATCTTAATCCTTAATGGAAGAGTAGTG
1 AAGCAAATCAATC-TAAGCCTTCACGGAAGAGTAGTG
* * * *
4567184 AAGTAAATCAATATAAGCCTTCACAGAAGAATAGTG
1 AAGCAAATCAATCTAAGCCTTCACGGAAGAGTAGTG
* * *
4567220 AAGCAAATCAATCTAAGCCTTCACGAAATAGTAGTT
1 AAGCAAATCAATCTAAGCCTTCACGGAAGAGTAGTG
** * *
4567256 AATTAAATCAATCTAAGCCTTAACGGAAGAGTTGTG
1 AAGCAAATCAATCTAAGCCTTCACGGAAGAGTAGTG
* *
4567292 AAGCAAATCAATCTAACCCTTCAGGGAAGAGTAGTG
1 AAGCAAATCAATCTAAGCCTTCACGGAAGAGTAGTG
4567328 AAGCAAATCAATCTAAGCCTTCACGGAAGAGTAGTG
1 AAGCAAATCAATCTAAGCCTTCACGGAAGAGTAGTG
* *
4567364 AAGC--ATAAATCTAAGCCTTCACAGAAGAGTAGTG
1 AAGCAAATCAATCTAAGCCTTCACGGAAGAGTAGTG
* * *
4567398 AAACAAATCAATCTAAGCCTTCACGGAATAGTAGTA
1 AAGCAAATCAATCTAAGCCTTCACGGAAGAGTAGTG
4567434 AAGCAAATCAATCTTAAGCCTTCACGGAAGAGTAGTG
1 AAGCAAATCAATC-TAAGCCTTCACGGAAGAGTAGTG
*
4567471 AAGTAAATCAATCT
1 AAGCAAATCAATCT
4567485 CGAGTGGTAT
Statistics
Matches: 322, Mismatches: 48, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
34 31 0.10
36 228 0.71
37 63 0.20
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.23
Consensus pattern (36 bp):
AAGCAAATCAATCTAAGCCTTCACGGAAGAGTAGTG
Found at i:4567788 original size:101 final size:101
Alignment explanation
Indices: 4567492--4568029 Score: 576
Period size: 101 Copynumber: 5.3 Consensus size: 101
4567482 TCTCGAGTGG
* * * * * **
4567492 TATCTCCCTGAAGGAATAGTGGAACATATCCATTTTCGTTAGATTTC-CAGAGTCTTATCTCCCT
1 TATCTCCCTGAAAGAAGAGTGGAGCAGATCTATTTTC-AAAGATTTCTCA-AGTCTTATCTCCCT
* *
4567556 GAAAGAAGAGTGGAGCAGATTCACCTTCCCTTAGATTC
64 GAAAGAAGAGTGGAGCAGATTCATCTTCCCTTGGATTC
* * * * * * * * *
4567594 TTTCTACCTGAAATAAGAGTGGAGCATATCCATTTTTAATAAATCAATCTCGAGTCTTATCTCCC
1 TATCTCCCTGAAAGAAGAGTGGAGCAGATCTATTTTCAA-AGAT--TTCTCAAGTCTTATCTCCC
* * * *
4567659 TAAAAGAAGAGTGGACCAGATTCGTCTTCCCTTGGATTG
63 TGAAAGAAGAGTGGAGCAGATTCATCTTCCCTTGGATTC
* * * * *
4567698 TATCTCCCTGAAAGAATAGTGGAGCAGATATGTTTTCAAAGATTTCTCAAGTCTTATATCCTTGA
1 TATCTCCCTGAAAGAAGAGTGGAGCAGATCTATTTTCAAAGATTTCTCAAGTCTTATCTCCCTGA
* * *
4567763 AAGAAGAGTGGAGCATATTCTTCTTCCTTTGGATTC
66 AAGAAGAGTGGAGCAGATTCATCTTCCCTTGGATTC
* * *
4567799 TATCTCCCTGAAAGAAGAGTGGAGCAGATCCATTTTCAAAGATTTCTCGAGTCTTATCTCCCTAA
1 TATCTCCCTGAAAGAAGAGTGGAGCAGATCTATTTTCAAAGATTTCTCAAGTCTTATCTCCCTGA
*
4567864 AAGAAGAGTGAAGCAGATTCATCTTCCCTTGGATTC
66 AAGAAGAGTGGAGCAGATTCATCTTCCCTTGGATTC
* * * *
4567900 TATCTCCCTGAAAGAAGAGTAGAGCAGATCTGTTTTCGTTAA-ATTAATCTCAAGTCTTATCTCT
1 TATCTCCCTGAAAGAAGAGTGGAGCAGATCTATTTTC--AAAGATT--TCTCAAGTCTTATCTCC
* * * *
4567964 CTGAAACAAGAGTGGAGAAGATTCTTCTTCCCTTGGATTT
62 CTGAAAGAAGAGTGGAGCAGATTCATCTTCCCTTGGATTC
* * *
4568004 TATCTCCCTAAAAGAATAGTGCAGCA
1 TATCTCCCTGAAAGAAGAGTGGAGCA
4568030 TATCCGTCTT
Statistics
Matches: 362, Mismatches: 66, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
101 171 0.47
102 36 0.10
103 5 0.01
104 149 0.41
105 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (101 bp):
TATCTCCCTGAAAGAAGAGTGGAGCAGATCTATTTTCAAAGATTTCTCAAGTCTTATCTCCCTGA
AAGAAGAGTGGAGCAGATTCATCTTCCCTTGGATTC
Found at i:4567953 original size:205 final size:204
Alignment explanation
Indices: 4567532--4568034 Score: 656
Period size: 205 Copynumber: 2.5 Consensus size: 204
4567522 CATTTTCGTT
* ** * *
4567532 AGATTTC-CAGAGTCTTATCTCCCTGAAAGAAGAGTGGAGCAGATTCACCTTCCCTTAGATTCTT
1 AGATTTCTCA-AGTCTTATCTCCTTGAAAGAAGAGTGGAGCAGATTCTTCTTCCCTTGGATTCTA
* * *
4567596 TCTACCTGAAATAAGAGTGGAGCATATCCATTTTTAATAAATCAATCTCGAGTCTTATCTCCCTA
65 TCTCCCTGAAAGAAGAGTGGAGCATATCCATTTTCAATAAAT-AATCTCGAGTCTTATCTCCCTA
* * * * *
4567661 AAAGAAGAGTGGACCAGATTCGTCTTCCCTTGGATTGTATCTCCCTGAAAGAATAGTGGAGCAGA
129 AAAGAAGAGTGAACCAGATTCATCTTCCCTTGGATTCTATCTCCCTGAAAGAAGAGTAGAGCAGA
4567726 TATGTTTTCAA
194 TATGTTTTCAA
* * *
4567737 AGATTTCTCAAGTCTTATATCCTTGAAAGAAGAGTGGAGCATATTCTTCTTCCTTTGGATTCTAT
1 AGATTTCTCAAGTCTTATCTCCTTGAAAGAAGAGTGGAGCAGATTCTTCTTCCCTTGGATTCTAT
* * *
4567802 CTCCCTGAAAGAAGAGTGGAGCAGATCCATTTTCAA-AGAT-TTCTCGAGTCTTATCTCCCTAAA
66 CTCCCTGAAAGAAGAGTGGAGCATATCCATTTTCAATAAATAATCTCGAGTCTTATCTCCCTAAA
* *
4567865 AGAAGAGTGAAGCAGATTCATCTTCCCTTGGATTCTATCTCCCTGAAAGAAGAGTAGAGCAGATC
131 AGAAGAGTGAACCAGATTCATCTTCCCTTGGATTCTATCTCCCTGAAAGAAGAGTAGAGCAGATA
*
4567930 TGTTTTCGTTA
196 TGTTTTC--AA
* * *
4567941 A-ATTAATCTCAAGTCTTATCT-CTCTGAAACAAGAGTGGAGAAGATTCTTCTTCCCTTGGATTT
1 AGATT--TCTCAAGTCTTATCTCCT-TGAAAGAAGAGTGGAGCAGATTCTTCTTCCCTTGGATTC
* * *
4568004 TATCTCCCTAAAAGAATAGTGCAGCATATCC
63 TATCTCCCTGAAAGAAGAGTGGAGCATATCC
4568035 GTCTTTCTTC
Statistics
Matches: 260, Mismatches: 32, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
202 87 0.33
203 3 0.01
204 7 0.03
205 161 0.62
206 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (204 bp):
AGATTTCTCAAGTCTTATCTCCTTGAAAGAAGAGTGGAGCAGATTCTTCTTCCCTTGGATTCTAT
CTCCCTGAAAGAAGAGTGGAGCATATCCATTTTCAATAAATAATCTCGAGTCTTATCTCCCTAAA
AGAAGAGTGAACCAGATTCATCTTCCCTTGGATTCTATCTCCCTGAAAGAAGAGTAGAGCAGATA
TGTTTTCAA
Found at i:4568080 original size:151 final size:149
Alignment explanation
Indices: 4567852--4568135 Score: 342
Period size: 151 Copynumber: 1.9 Consensus size: 149
4567842 TTCTCGAGTC
* * *
4567852 TTATCTCCCTAAAAGAAGAGTGAAGCAGATTCATCTTCCCTTGGATTCTATCTCCCTGAAAGAAG
1 TTATCTCCCTAAAAGAAGAGTGAAGCAGATCCATCTTCCCTTGGATTCTATCTCACTAAAAGAAG
** * *
4567917 AGTAGAGCAGATCTGTTTT-CGTTAA-ATTAATCTCAAGTCTTATCTCTCTGAAACAAGAGTGGA
66 AGTAGAGCAGATCCATTTTAC--AAAGATT--TCTCAAGTCTTATCTCCCTGAAACAAGAGTGGA
4567980 GAAGATTCTTCTTCCCTTGGATT
127 GAAGATTCTTCTTCCCTTGGATT
* * * * *
4568003 TTATCTCCCTAAAAGAATAGTGCAGCATATCCGTCTT-TCTTCGGA-TCGTATCTCACTAAAAGA
1 TTATCTCCCTAAAAGAAGAGTGAAGCAGATCCATCTTCCCTT-GGATTC-TATCTCACTAAAAGA
* * * *
4568066 AGAGTGGAGCAGATCCATTTTACAAAGATTTCTCGAGTCTTATCTCCCTGAAAGAAGAGTGGAGC
64 AGAGTAGAGCAGATCCATTTTACAAAGATTTCTCAAGTCTTATCTCCCTGAAACAAGAGTGGAGA
4568131 AGATT
129 AGATT
4568136 TCCCTTCAAA
Statistics
Matches: 113, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
149 36 0.32
150 7 0.06
151 69 0.61
152 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (149 bp):
TTATCTCCCTAAAAGAAGAGTGAAGCAGATCCATCTTCCCTTGGATTCTATCTCACTAAAAGAAG
AGTAGAGCAGATCCATTTTACAAAGATTTCTCAAGTCTTATCTCCCTGAAACAAGAGTGGAGAAG
ATTCTTCTTCCCTTGGATT
Found at i:4568271 original size:3 final size:3
Alignment explanation
Indices: 4568263--4568306 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
4568253 AGTTGTCATA
4568263 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
4568307 AAAATAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:4571300 original size:38 final size:40
Alignment explanation
Indices: 4571249--4571359 Score: 140
Period size: 39 Copynumber: 2.9 Consensus size: 40
4571239 AACAAAAAAA
* * *
4571249 AAAACTCTCTAACTTCCAAGAA-CTCC-TAAATTCACAAT
1 AAAACACTCTAACTCCCAAGAAGATCCTTAAATTCACAAT
4571287 AAAACACTCTAACTCCCAA-AAGATCCTTAAATTCACAAT
1 AAAACACTCTAACTCCCAAGAAGATCCTTAAATTCACAAT
* **
4571326 AAAACACTCTCACTCCCAAG-AGATTATTAAATTC
1 AAAACACTCTAACTCCCAAGAAGATCCTTAAATTC
4571360 TCCCCTTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
37 2 0.03
38 20 0.31
39 42 0.66
ACGTcount: A:0.43, C:0.28, G:0.04, T:0.25
Consensus pattern (40 bp):
AAAACACTCTAACTCCCAAGAAGATCCTTAAATTCACAAT
Found at i:4587373 original size:20 final size:19
Alignment explanation
Indices: 4587343--4587406 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 19
4587333 AAAGAAAAAC
4587343 TTTTGTAATCAAGTCTATG
1 TTTTGTAATCAAGTCTATG
*
4587362 TTTTGATAATCAA----A-C
1 TTTTG-TAATCAAGTCTATG
4587377 TTTTGTAATCAAGTCTATG
1 TTTTGTAATCAAGTCTATG
4587396 TTTTGATAATC
1 TTTTG-TAATC
4587407 TTTCTATCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
14 7 0.19
15 5 0.14
16 1 0.03
18 1 0.03
19 10 0.28
20 12 0.33
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (19 bp):
TTTTGTAATCAAGTCTATG
Found at i:4587382 original size:34 final size:34
Alignment explanation
Indices: 4587339--4587406 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
4587329 GTAAAAAGAA
4587339 AAACTTTTGTAATCAAGTCTATGTTTTGATAATC
1 AAACTTTTGTAATCAAGTCTATGTTTTGATAATC
4587373 AAACTTTTGTAATCAAGTCTATGTTTTGATAATC
1 AAACTTTTGTAATCAAGTCTATGTTTTGATAATC
4587407 TTTCTATCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (34 bp):
AAACTTTTGTAATCAAGTCTATGTTTTGATAATC
Found at i:4591640 original size:16 final size:16
Alignment explanation
Indices: 4591597--4591645 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
4591587 TTAAAAATAA
*
4591597 ATACATAT-TATTATTT
1 ATACATATATA-TATAT
* *
4591613 AAACAAATATATATAT
1 ATACATATATATATAT
4591629 ATACATATATATATAT
1 ATACATATATATATAT
4591645 A
1 A
4591646 AGACAGATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
16 25 0.93
17 2 0.07
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (16 bp):
ATACATATATATATAT
Found at i:4591684 original size:12 final size:12
Alignment explanation
Indices: 4591653--4591754 Score: 68
Period size: 12 Copynumber: 9.4 Consensus size: 12
4591643 ATAAGACAGA
4591653 TAAAA-AATAA-
1 TAAAATAATAAT
4591663 T-AAATAATAAT
1 TAAAATAATAAT
*
4591674 TAAAGTAATAAT
1 TAAAATAATAAT
4591686 TAAAAT-AT-A-
1 TAAAATAATAAT
4591695 TAAAAGTAATAA-
1 TAAAA-TAATAAT
4591707 TAAAATAAT-AT
1 TAAAATAATAAT
*
4591718 TACAAATAA-AAA
1 TA-AAATAATAAT
*
4591730 TGAAATAA-AA-
1 TAAAATAATAAT
4591740 T-AAATAA-AAT
1 TAAAATAATAAT
4591750 TAAAA
1 TAAAA
4591755 CTACAAATAA
Statistics
Matches: 77, Mismatches: 4, Indels: 21
0.75 0.04 0.21
Matches are distributed among these distances:
9 16 0.21
10 11 0.14
11 22 0.29
12 28 0.36
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (12 bp):
TAAAATAATAAT
Found at i:4591685 original size:22 final size:23
Alignment explanation
Indices: 4591658--4591717 Score: 79
Period size: 22 Copynumber: 2.7 Consensus size: 23
4591648 ACAGATAAAA
*
4591658 AATAATAAATAATA-ATTAAAGT
1 AATAATAAATAATATATAAAAGT
*
4591680 AATAATTAA-AATATATAAAAGT
1 AATAATAAATAATATATAAAAGT
4591702 AATAATAAAATAATAT
1 AATAAT-AAATAATAT
4591718 TACAAATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 4 0.12
22 21 0.66
23 2 0.06
24 5 0.16
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (23 bp):
AATAATAAATAATATATAAAAGT
Found at i:4591690 original size:33 final size:32
Alignment explanation
Indices: 4591653--4591754 Score: 97
Period size: 33 Copynumber: 3.2 Consensus size: 32
4591643 ATAAGACAGA
4591653 TAAAA-AATAATAAATAATAATTAAAGTAATAAT
1 TAAAATAATAATAAATAATAA-TAAA-TAATAAT
*
4591686 TAAAATATATAA-AAGTAATAATAAAATAAT-AT
1 TAAAATA-ATAATAAATAATAAT-AAATAATAAT
*
4591718 TACAAATAAAAATGAAATAA-AATAAATAA-AAT
1 TA-AAATAATAAT-AAATAATAATAAATAATAAT
4591750 TAAAA
1 TAAAA
4591755 CTACAAATAA
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
31 3 0.05
32 17 0.29
33 18 0.31
34 17 0.29
35 4 0.07
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (32 bp):
TAAAATAATAATAAATAATAATAAATAATAAT
Found at i:4593322 original size:23 final size:23
Alignment explanation
Indices: 4593291--4593350 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
4593281 ATTTGGGCCT
*
4593291 ATAA-AATAAATAAAATTATT-TA
1 ATAATAAT-AATAAAATAATTATA
4593313 ATAATAATAATAAAATAATTATA
1 ATAATAATAATAAAATAATTATA
* *
4593336 ATTATTATAATAAAA
1 ATAATAATAATAAAA
4593351 ATAGAACCGG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 15 0.45
23 18 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (23 bp):
ATAATAATAATAAAATAATTATA
Found at i:4594024 original size:104 final size:111
Alignment explanation
Indices: 4593773--4594026 Score: 294
Period size: 112 Copynumber: 2.3 Consensus size: 111
4593763 AGAGTCAAAC
* * * *
4593773 AAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTA
1 AAAGGTTGAACAAATTCTTCTCATGATGAAGTTCTTCTTCCTCTTCAGATAAGTTCATCTCATTA
*
4593838 TGAACTTTCTCTGGAAACGTTAATTCATCAAGTGATGAATTCAGGCA
66 TGAACTTTCTCTAGAAACGTTAATTCA-CAAGTGATGAATTCAGGCA
* *
4593885 AAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTCTTCAGATAAGTT-ATCT-ATTA
1 AAAGGTTGAACAAATTCTTCTCATGATGAAGTTCTTCTTCCTCTTCAGATAAGTTCATCTCATTA
* * * *
4593948 TG-ACTTTCTCTAG-AATGTTGA-TC-CAAGTGATGATTTGA-GCA
66 TGAACTTTCTCTAGAAACGTTAATTCACAAGTGATGAATTCAGGCA
*
4593989 AAAGGTT-AATCAACTTCCTTCTTCA-GATG-AGTTCTTCT
1 AAAGGTTGAA-CAAATT-CTTC-TCATGATGAAGTTCTTCT
4594027 CATTATGAAC
Statistics
Matches: 128, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
103 2 0.02
104 23 0.18
105 20 0.16
106 3 0.02
107 2 0.02
108 6 0.05
109 10 0.08
110 6 0.05
111 3 0.02
112 53 0.41
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (111 bp):
AAAGGTTGAACAAATTCTTCTCATGATGAAGTTCTTCTTCCTCTTCAGATAAGTTCATCTCATTA
TGAACTTTCTCTAGAAACGTTAATTCACAAGTGATGAATTCAGGCA
Found at i:4594239 original size:112 final size:113
Alignment explanation
Indices: 4594002--4594965 Score: 1282
Period size: 112 Copynumber: 8.6 Consensus size: 113
4593992 GGTTAATCAA
**
4594002 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACACT-TCTGGAAATGTTGATCCATCAAGTGA
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
* ** * *
4594066 TGGATTTGAGCAAAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCAT
66 TGAATTCAAG-AAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTT
* * * * **
4594114 CTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGCAATGCTAATCCATCGGGTGA
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
* * *
4594179 TGAATTAAAGAAAAATGTTGAATAAATTCTTCTCATTATGAACTTCTT
66 TGAATTCAAGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTT
*
4594227 C-TCCTTCTTCAGATGAGTTCTTCTCATTATGAAC-TTCATCTGGAAAAGTTGATCCATCAAGTG
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTC-TCTGGAAATGTTGATCCATCAAGTG
* * *
4594290 ATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTT
65 ATGAATTCAAGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTT
* *
4594339 CTTCC-TCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTAGAAATGTTGATCCATCAAGTGA
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
* * * *
4594403 TGAATTCAAGCAAAAGGCTAAACAAGTTCTTCTCATTATGAACTTCTT
66 TGAATTCAAGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTT
**
4594451 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACACT-TCTGGAAATGTTGATCCATCAAGTGA
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
* ** * *
4594515 TGGATTTGAGCAAAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCAT
66 TGAATTCAAG-AAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTT
* * * * **
4594563 CTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGCAATGCTAATCCATCGGGTGA
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
*
4594628 TGAATTAAAGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTT
66 TGAATTCAAGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTT
* * *
4594676 C-TCCTTCTTCAGATGAGTTCTTCTCATTGTGAACTTTCTCTGGAAAAGTTGATCCATTAAGTGA
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
* * * *
4594740 TGAATTCAGGCAAAAGGTTGAACAAATTATTCTCATTATGAATTTCTT
66 TGAATTCAAGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTT
* * * * *
4594788 CTTCC-TCTTTAGATAAGTTATTCTCATTATGAACTTTCTCTGGAAATGGTGCTCCATCAAGTGA
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
* * * * *
4594852 TGAATTCGAGCAAAAGGGTAAACAAGTTCTTCTCATTATGAACTTCTT
66 TGAATTCAAGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTT
* * **
4594900 ATTCCTTCTTCAGATGAGTTCTTCTCACTATGAACACT-TCTGGAAATGTTGATCCATCAAGTGA
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
4594964 TG
66 TG
4594966 GATTTAAATC
Statistics
Matches: 744, Mismatches: 97, Indels: 22
0.86 0.11 0.03
Matches are distributed among these distances:
111 3 0.00
112 556 0.75
113 185 0.25
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (113 bp):
CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
TGAATTCAAGAAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTT
Found at i:4594433 original size:337 final size:335
Alignment explanation
Indices: 4594002--4594965 Score: 1308
Period size: 337 Copynumber: 2.9 Consensus size: 335
4593992 GGTTAATCAA
**
4594002 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACACT-TCTGGAAATGTTGATCCATCAAGTGA
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
* ** * *
4594066 TGGATTTGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCATCTTCATTCTTCAGATGA
66 TGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTC-TTCTTCAGATGA
* * ** *
4594131 GTTCTTCTCATTATGAACTTTCTCTGGCAATGCTAATCCATCGGGTGATGAATTAAAGAAAAATG
130 GTTCTTCTCATTATGAACTTTCTCTGGAAATGCTGATCCATCAAGTGATGAATTAGAGAAAAA-G
* *
4594196 TTGAATAAATTCTTCTCATTATGAACTTCTTCTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC
194 TTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC
* * * *
4594261 TTCATCTGGAAAAGTTGATCCATCAAGTGATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCA
259 TTC-TCTGGAAATGTTGATCCATCAAGTGATGAATTAAAGAAAAAGGTTGAACAAATTCTTCTCA
*
4594326 TTATGAATTTCTT
323 TTATGAACTTCTT
* *
4594339 CTTCC-TCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTAGAAATGTTGATCCATCAAGTGA
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
* *
4594403 TGAATTCAAGCAAAAGGCTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGA
66 TGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTT-CTTCTTCAGATGA
** * * *
4594468 GTTCTTCTCATTATGAACACT-TCTGGAAATGTTGATCCATCAAGTGATGGATTTGAGCAAAAAG
130 GTTCTTCTCATTATGAACTTTCTCTGGAAATGCTGATCCATCAAGTGATGAATTAGAG-AAAAAG
* *
4594532 TTGAACAAGTTCTTCTCATTATGAACTTCATCTTCATTCTTCAGATGAGTTCTTCTCATTATGAA
194 TTGAACAAGTTCTTCTCATTATGAACTTCTTC-TCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * * **
4594597 CTTTCTCTGGCAATGCTAATCCATCGGGTGATGAATTAAAGAAAAAGGTTGAACAAATTCTTCTC
258 C-TTCTCTGGAAATGTTGATCCATCAAGTGATGAATTAAAGAAAAAGGTTGAACAAATTCTTCTC
4594662 ATTATGAACTTCTT
322 ATTATGAACTTCTT
* * *
4594676 C-TCCTTCTTCAGATGAGTTCTTCTCATTGTGAACTTTCTCTGGAAAAGTTGATCCATTAAGTGA
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
* * * * * * *
4594740 TGAATTCAGGCAAAAGGTTGAACAAATTATTCTCATTATGAATTTCTTCTTCCTCTTTAGATAAG
66 TGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAG
* * * * * *
4594805 TTATTCTCATTATGAACTTTCTCTGGAAATGGTGCTCCATCAAGTGATGAATTCGAGCAAAAGGG
131 TTCTTCTCATTATGAACTTTCTCTGGAAATGCTGATCCATCAAGTGATGAATTAGAG-AAAAAGT
* * *
4594870 TAAACAAGTTCTTCTCATTATGAACTTCTTATTCCTTCTTCAGATGAGTTCTTCTCACTATGAAC
195 TGAACAAGTTCTTCTCATTATGAACTTCTT-CTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC
*
4594935 -ACTTCTGGAAATGTTGATCCATCAAGTGATG
259 TTC-TCTGGAAATGTTGATCCATCAAGTGATG
4594966 GATTTAAATC
Statistics
Matches: 549, Mismatches: 69, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
335 1 0.00
336 141 0.26
337 403 0.73
338 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (335 bp):
CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGA
TGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCTTCTTCAGATGAG
TTCTTCTCATTATGAACTTTCTCTGGAAATGCTGATCCATCAAGTGATGAATTAGAGAAAAAGTT
GAACAAGTTCTTCTCATTATGAACTTCTTCTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTT
CTCTGGAAATGTTGATCCATCAAGTGATGAATTAAAGAAAAAGGTTGAACAAATTCTTCTCATTA
TGAACTTCTT
Found at i:4594532 original size:449 final size:449
Alignment explanation
Indices: 4594002--4594970 Score: 1796
Period size: 449 Copynumber: 2.2 Consensus size: 449
4593992 GGTTAATCAA
4594002 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACACTTCTGGAAATGTTGATCCATCAAGTGAT
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACACTTCTGGAAATGTTGATCCATCAAGTGAT
4594067 GGATTTGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCATCTTCATTCTTCAGATGAG
66 GGATTTGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCATCTTCATTCTTCAGATGAG
*
4594132 TTCTTCTCATTATGAACTTTCTCTGGCAATGCTAATCCATCGGGTGATGAATTAAAGAAAAATGT
131 TTCTTCTCATTATGAACTTTCTCTGGCAATGCTAATCCATCGGGTGATGAATTAAAGAAAAAGGT
*
4594197 TGAATAAATTCTTCTCATTATGAACTTCTTCTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC-
196 TGAACAAATTCTTCTCATTATGAACTTCTTCTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
*
4594261 TTCATCTGGAAAAGTTGATCCATCAAGTGATGAATTCAGGCAAAAGGTTGAACAAATTCTTCTCA
261 TTC-TCTGGAAAAGTTGATCCATCAAGTGATGAATTCAGGCAAAAGGTTGAACAAATTATTCTCA
* *
4594326 TTATGAATTTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTAGAAATGTTGA
325 TTATGAATTTCTTCTTCCTCTTCAGATAAGTTATTCTCATTATGAACTTTCTCTAGAAATGGTGA
4594391 TCCATCAAGTGATGAATTCAAGCAAAAGGCTAAACAAGTTCTTCTCATTATGAACTTCTT
390 TCCATCAAGTGATGAATTCAAGCAAAAGGCTAAACAAGTTCTTCTCATTATGAACTTCTT
4594451 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACACTTCTGGAAATGTTGATCCATCAAGTGAT
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACACTTCTGGAAATGTTGATCCATCAAGTGAT
4594516 GGATTTGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCATCTTCATTCTTCAGATGAG
66 GGATTTGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCATCTTCATTCTTCAGATGAG
4594581 TTCTTCTCATTATGAACTTTCTCTGGCAATGCTAATCCATCGGGTGATGAATTAAAGAAAAAGGT
131 TTCTTCTCATTATGAACTTTCTCTGGCAATGCTAATCCATCGGGTGATGAATTAAAGAAAAAGGT
*
4594646 TGAACAAATTCTTCTCATTATGAACTTCTTCTCCTTCTTCAGATGAGTTCTTCTCATTGTGAACT
196 TGAACAAATTCTTCTCATTATGAACTTCTTCTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
*
4594711 TTCTCTGGAAAAGTTGATCCATTAAGTGATGAATTCAGGCAAAAGGTTGAACAAATTATTCTCAT
261 TTCTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAGGCAAAAGGTTGAACAAATTATTCTCAT
* * *
4594776 TATGAATTTCTTCTTCCTCTTTAGATAAGTTATTCTCATTATGAACTTTCTCTGGAAATGGTGCT
326 TATGAATTTCTTCTTCCTCTTCAGATAAGTTATTCTCATTATGAACTTTCTCTAGAAATGGTGAT
* *
4594841 CCATCAAGTGATGAATTCGAGCAAAAGGGTAAACAAGTTCTTCTCATTATGAACTTCTT
391 CCATCAAGTGATGAATTCAAGCAAAAGGCTAAACAAGTTCTTCTCATTATGAACTTCTT
* *
4594900 ATTCCTTCTTCAGATGAGTTCTTCTCACTATGAACACTTCTGGAAATGTTGATCCATCAAGTGAT
1 CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACACTTCTGGAAATGTTGATCCATCAAGTGAT
4594965 GGATTT
66 GGATTT
4594971 AAATCTTTGC
Statistics
Matches: 505, Mismatches: 14, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
449 502 0.99
450 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (449 bp):
CTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACACTTCTGGAAATGTTGATCCATCAAGTGAT
GGATTTGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCATCTTCATTCTTCAGATGAG
TTCTTCTCATTATGAACTTTCTCTGGCAATGCTAATCCATCGGGTGATGAATTAAAGAAAAAGGT
TGAACAAATTCTTCTCATTATGAACTTCTTCTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
TTCTCTGGAAAAGTTGATCCATCAAGTGATGAATTCAGGCAAAAGGTTGAACAAATTATTCTCAT
TATGAATTTCTTCTTCCTCTTCAGATAAGTTATTCTCATTATGAACTTTCTCTAGAAATGGTGAT
CCATCAAGTGATGAATTCAAGCAAAAGGCTAAACAAGTTCTTCTCATTATGAACTTCTT
Found at i:4596761 original size:75 final size:75
Alignment explanation
Indices: 4596650--4596981 Score: 317
Period size: 76 Copynumber: 4.4 Consensus size: 75
4596640 ACAGGATGAT
* * * * * *
4596650 ATAGGCCTTCAGCATGCCCCAACAATTACTGATACGAACATTCAAAATACATCAACATTCTTGAT
1 ATAGGCTTTCAGCATGCCCCAACATTTGCTGATACAAACATTCAAAATACATCAACATTCCTCAT
4596715 TCTGATTGAA
66 TCTGATTGAA
* * * * * *
4596725 ATAGGCTTTCAGTATGCCCCATCGA-TTGCTGCTACGAACGTTCAAAATACATCAACATTCTTCA
1 ATAGGCTTTCAGCATGCCCCAAC-ATTTGCTGATACAAACATTCAAAATACATCAACATTCCTCA
* *
4596789 TTATGATTAAA
65 TTCTGATTGAA
** * * * * * **
4596800 AGGGGCTTTCAACATGTCCCAACATTTTGTTGATATAAATATTCAGGATACATCAACATTCCTCA
1 ATAGGCTTTCAGCATGCCCCAACA-TTTGCTGATACAAACATTCAAAATACATCAACATTCCTCA
4596865 TTCTGATTGAA
65 TTCTGATTGAA
* * * * ** *
4596876 ATGGGTTTTCAGCATGCCCCAACATTTTGCTGATATAAATATTCAGGATACATCAACATTCCTGA
1 ATAGGCTTTCAGCATGCCCCAACA-TTTGCTGATACAAACATTCAAAATACATCAACATTCCTCA
4596941 TTCTGATTGAA
65 TTCTGATTGAA
* * *
4596952 A-AGGGTTTTCAACATTCCCCAACATTTGCT
1 ATA-GGCTTTCAGCATGCCCCAACATTTGCT
4596982 TCTTGTTAAT
Statistics
Matches: 218, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
74 1 0.00
75 87 0.40
76 130 0.60
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (75 bp):
ATAGGCTTTCAGCATGCCCCAACATTTGCTGATACAAACATTCAAAATACATCAACATTCCTCAT
TCTGATTGAA
Found at i:4596933 original size:34 final size:34
Alignment explanation
Indices: 4596819--4596935 Score: 83
Period size: 34 Copynumber: 3.2 Consensus size: 34
4596809 CAACATGTCC
*
4596819 CAACATTTTGTTGATATAAATATTCAGGATACAT
1 CAACATTTTGCTGATATAAATATTCAGGATACAT
* * * * **
4596853 CAACATTCCTCATTCTGAT-TGAAATGGGTTTTCAGCATGCCC
1 CAACATT--T--TGCTGATAT-AAA----TATTCAGGATACAT
4596895 CAACATTTTGCTGATATAAATATTCAGGATACAT
1 CAACATTTTGCTGATATAAATATTCAGGATACAT
4596929 CAACATT
1 CAACATT
4596936 CCTGATTCTG
Statistics
Matches: 60, Mismatches: 13, Indels: 20
0.65 0.14 0.22
Matches are distributed among these distances:
34 23 0.38
36 1 0.02
37 1 0.02
38 17 0.28
39 1 0.02
40 1 0.02
42 16 0.27
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (34 bp):
CAACATTTTGCTGATATAAATATTCAGGATACAT
Found at i:4597134 original size:36 final size:34
Alignment explanation
Indices: 4597094--4597167 Score: 80
Period size: 36 Copynumber: 2.1 Consensus size: 34
4597084 CATTACTTCT
4597094 TATTG-AGATGAGCCTCCAAGAATG-CCCAAGTATTC
1 TATTGTAG-TGAGCCTCCAA-AATGCCCCAA-TATTC
* *
4597129 ATATTGTTGTGAGCCTTCAAAATGCCCCAATATTC
1 -TATTGTAGTGAGCCTCCAAAATGCCCCAATATTC
4597164 TATT
1 TATT
4597168 TCTGGTTGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
34 4 0.12
35 9 0.26
36 20 0.59
37 1 0.03
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (34 bp):
TATTGTAGTGAGCCTCCAAAATGCCCCAATATTC
Found at i:4598183 original size:114 final size:114
Alignment explanation
Indices: 4597992--4598218 Score: 373
Period size: 114 Copynumber: 2.0 Consensus size: 114
4597982 GACTATCATA
* * * * *
4597992 AAATTTATCTTTCAAATCTAATGATTGGTTTTGGGGTTCATACCGAACCAGACCATATAACTCAA
1 AAATTCATCTTTCAAATCCAATGATTGGTTTTAGGGTTCATACCAAACCAGACCAGATAACTCAA
*
4598057 AGAACACTTCCAGAACATGCTATTGGGTCTCTTTATTTCTACTATGAGC
66 AGAACACTTCCAGAACATGCTATTGGGTCTCCTTATTTCTACTATGAGC
* *
4598106 AAATTCATCTTTTAAATCCAATGATTGGTTTTAGGGTTCATACCAAACCAGATCAGATAACTCAA
1 AAATTCATCTTTCAAATCCAATGATTGGTTTTAGGGTTCATACCAAACCAGACCAGATAACTCAA
*
4598171 AGAACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAG
66 AGAACACTTCCAGAACATGCTATTGGGTCTCCTTATTTCTACTATGAG
4598219 AACGTGACAC
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 104 1.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (114 bp):
AAATTCATCTTTCAAATCCAATGATTGGTTTTAGGGTTCATACCAAACCAGACCAGATAACTCAA
AGAACACTTCCAGAACATGCTATTGGGTCTCCTTATTTCTACTATGAGC
Found at i:4600406 original size:23 final size:24
Alignment explanation
Indices: 4600380--4600481 Score: 142
Period size: 23 Copynumber: 4.4 Consensus size: 24
4600370 CTTGATTCAA
*
4600380 TTTTCCTTTTTTTTCTTTTTCC-T
1 TTTTCCTTTTTTTCCTTTTTCCTT
*
4600403 TTTT-CTTTTTTTCTTTTTTTCCTT
1 TTTTCCTTTTTTTC-CTTTTTCCTT
4600427 TTTTCC-TTTTTTCCTTTTTCCTT
1 TTTTCCTTTTTTTCCTTTTTCCTT
4600450 TTTTCC-TTTTTTCCTTTTTCC-T
1 TTTTCCTTTTTTTCCTTTTTCCTT
4600472 TTTTCCTTTT
1 TTTTCCTTTT
4600482 CCTCTTGCAT
Statistics
Matches: 72, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
22 15 0.21
23 44 0.61
24 12 0.17
25 1 0.01
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (24 bp):
TTTTCCTTTTTTTCCTTTTTCCTT
Found at i:4600475 original size:8 final size:8
Alignment explanation
Indices: 4600380--4600481 Score: 133
Period size: 8 Copynumber: 13.2 Consensus size: 8
4600370 CTTGATTCAA
4600380 TTTTCCTT
1 TTTTCCTT
*
4600388 TTTT-TTCT
1 TTTTCCT-T
4600396 TTTTCC-T
1 TTTTCCTT
*
4600403 TTTTCTTT
1 TTTTCCTT
*
4600411 TTTTCTTT
1 TTTTCCTT
4600419 TTTTCCTT
1 TTTTCCTT
4600427 TTTTCCTT
1 TTTTCCTT
4600435 TTTTCC-T
1 TTTTCCTT
4600442 TTTTCCTT
1 TTTTCCTT
4600450 TTTTCCTT
1 TTTTCCTT
4600458 TTTTCC-T
1 TTTTCCTT
4600465 TTTTCC-T
1 TTTTCCTT
4600472 TTTTCCTT
1 TTTTCCTT
4600480 TT
1 TT
4600482 CCTCTTGCAT
Statistics
Matches: 85, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
7 28 0.33
8 57 0.67
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTCCTT
Found at i:4604563 original size:24 final size:23
Alignment explanation
Indices: 4604536--4604608 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 23
4604526 CTTTTATTTC
* *
4604536 AAATTTATTAATATATTTTTAAG
1 AAATTTATTAATATATATATAAG
*
4604559 AAAATCTATTAATATATATATAAG
1 -AAATTTATTAATATATATATAAG
* * * *
4604583 ATATTTATTTATATAAATATCAG
1 AAATTTATTAATATATATATAAG
4604606 AAA
1 AAA
4604609 AGGGCTTCTA
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
23 20 0.50
24 20 0.50
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.44
Consensus pattern (23 bp):
AAATTTATTAATATATATATAAG
Found at i:4604971 original size:2 final size:2
Alignment explanation
Indices: 4604964--4604994 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
4604954 ATTTAAACAA
*
4604964 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4604995 AGACTAAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:4604985 original size:16 final size:16
Alignment explanation
Indices: 4604942--4604992 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
4604932 TTAAAAATAA
*
4604942 ATACATAT-TATTATTT
1 ATACATATATA-TATAT
* *
4604958 AAACAAATATATATAT
1 ATACATATATATATAT
4604974 ATACATATATATATAT
1 ATACATATATATATAT
4604990 ATA
1 ATA
4604993 TAAGACTAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
16 27 0.93
17 2 0.07
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (16 bp):
ATACATATATATATAT
Found at i:4605020 original size:12 final size:11
Alignment explanation
Indices: 4605006--4605099 Score: 93
Period size: 12 Copynumber: 8.3 Consensus size: 11
4604996 GACTAAGATA
4605006 AAAATAATAAT
1 AAAATAATAAT
4605017 AAAATAATAATT
1 AAAATAATAA-T
*
4605029 AAAGTAATAAGT
1 AAAATAATAA-T
*
4605041 AAAAT-ATATT
1 AAAATAATAAT
4605051 AAAAGTAATAAT
1 AAAA-TAATAAT
*
4605063 AAAATAATATT
1 AAAATAATAAT
4605074 AGAAATAAATAAT
1 A-AAAT-AATAAT
*
4605087 GAAATAA-AAT
1 AAAATAATAAT
4605097 AAA
1 AAA
4605100 TAAAATTAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
10 10 0.14
11 23 0.33
12 31 0.45
13 5 0.07
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (11 bp):
AAAATAATAAT
Found at i:4605036 original size:23 final size:22
Alignment explanation
Indices: 4605010--4605093 Score: 98
Period size: 23 Copynumber: 3.6 Consensus size: 22
4605000 AAGATAAAAA
4605010 TAATAATAAAATAATAATTAAAG
1 TAATAATAAAATAAT-ATTAAAG
4605033 TAATAAGTAAAAT-ATATTAAAAG
1 TAATAA-TAAAATAATATT-AAAG
*
4605056 TAATAATAAAATAATATTAGAAA
1 TAATAATAAAATAATATTA-AAG
*
4605079 TAAATAATGAAATAA
1 T-AATAATAAAATAA
4605094 AATAAATAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
22 10 0.19
23 26 0.48
24 18 0.33
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (22 bp):
TAATAATAAAATAATATTAAAG
Found at i:4606603 original size:23 final size:23
Alignment explanation
Indices: 4606580--4606636 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
4606570 ATGTAAAATA
*
4606580 AATAAAATTATT-TAATAATAAT
1 AATAAAATAATTATAATAATAAT
* *
4606602 AATAAAATAATTATAATTATTAT
1 AATAAAATAATTATAATAATAAT
4606625 AATAAAAATAAT
1 AAT-AAAATAAT
4606637 AGAACCGGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 11 0.37
23 11 0.37
24 8 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (23 bp):
AATAAAATAATTATAATAATAAT
Found at i:4607339 original size:44 final size:44
Alignment explanation
Indices: 4607279--4607719 Score: 540
Period size: 44 Copynumber: 10.0 Consensus size: 44
4607269 ATACCATGAG
* *
4607279 TGGCACCTTTCAGCCAATAATGTACCGTTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * *
4607323 TGGCACATTTCTGCCAATAATGCACCATAATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * * *
4607367 TGACACATTTCTTCCAATAATGCACCATTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * * ** * *
4607411 TGGCATCTTTCTGCTAATAATACATTGTTATGTACTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * *
4607455 TGTCACCTTTCTGCCAAAAATGCACCGTTATGCATATTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * * * *
4607499 TGACACCTTTCTACCAAAAATGCACTGTTATGCATGTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * *
4607543 TGGCACCTTTCTTCCAATAATGCTCCTTTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* *
4607587 TGACACCTTTATGCCAATAATGCACCGTTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
** * ** *
4607631 TGGCATTTTTCTACCAATAATGCAATGTTATGCATTTTCTTTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * *
4607675 GGGCACATTTCTGCCAATAATGCACCGTTATGCATTTCCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
4607719 T
1 T
4607720 TTTAGACCAG
Statistics
Matches: 335, Mismatches: 62, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 335 1.00
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.40
Consensus pattern (44 bp):
TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
Found at i:4608253 original size:18 final size:20
Alignment explanation
Indices: 4608230--4608278 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
4608220 CCTTTCTCTT
*
4608230 AGTATCGATAC-CA-ACATC
1 AGTATCGATACTAATACATC
*
4608248 AGTATCGGTACTAATTACATC
1 AGTATCGATACTAA-TACATC
4608269 AGTATCGATA
1 AGTATCGATA
4608279 TTGTTCATCG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 10 0.40
19 1 0.04
21 14 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (20 bp):
AGTATCGATACTAATACATC
Found at i:4613441 original size:44 final size:44
Alignment explanation
Indices: 4613387--4613826 Score: 517
Period size: 44 Copynumber: 10.0 Consensus size: 44
4613377 ATACCATGAG
* * * *
4613387 TGGCTCCTTTCTGCCAATAATGTATCTTTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * * * *
4613431 TGGTACCTTTCAGTCAATAATGCACCATTATCCAATTTT--TTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGC-ATTTTCATTTA
* *
4613474 TGGCACATTTCTGCCAATAATGCACCGTTTTGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
*
4613518 TTGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * * **
4613562 TGTCACCTTTATGCCAAAAATGTGTCC-TTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATG-CACCGTTATGCATTTTCATTTA
* * * * *
4613606 TGACACCTTTCTACCAATAATTCATCGTTATGCATTTTGATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * * *
4613650 TGGCACCTTTTTGCTAATAATGCACCTTTATGCATTTTTATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* *
4613694 TGGCATCTTTCTGCCAATAATGCATCGTTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
** * * *
4613738 TATCACTTTTTTGCCAATAATGCAACGTTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * *
4613782 TGGCACATTTATGCCAATAATGCACCGTTATGCATTTCCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
4613826 T
1 T
4613827 TTTAGAGCAG
Statistics
Matches: 332, Mismatches: 59, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
42 5 0.02
43 31 0.09
44 289 0.87
45 7 0.02
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.43
Consensus pattern (44 bp):
TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
Found at i:4616657 original size:21 final size:20
Alignment explanation
Indices: 4616615--4616664 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
4616605 CTTCCTCTTG
4616615 GTATCGATACCTCCATATCA
1 GTATCGATACCTCCATATCA
*
4616635 GTATCGATACTACTTCA-ATCA
1 GTATCGATAC--CTCCATATCA
4616656 GTATCGATA
1 GTATCGATA
4616665 TTGTTCAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 10 0.37
21 13 0.48
22 4 0.15
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (20 bp):
GTATCGATACCTCCATATCA
Found at i:4619447 original size:20 final size:20
Alignment explanation
Indices: 4619422--4619582 Score: 70
Period size: 20 Copynumber: 7.2 Consensus size: 20
4619412 AAAATGAATT
4619422 AAATGATGCAATAAGGCATG
1 AAATGATGCAATAAGGCATG
*
4619442 AAATGATGCCATAACTAAAATGCATG
1 AAATGATG-C--AA-T--AAGGCATG
* *
4619468 AAAGGATGCATTAAGGCATG
1 AAATGATGCAATAAGGCATG
* *
4619488 AAAGGATGACATAACTAAAATGCATG
1 AAATGATG-C--AA-T--AAGGCATG
* *
4619514 AAATGATGCATTAGGGCATG
1 AAATGATGCAATAAGGCATG
* *
4619534 AAAGGATGCCATAAATGAAACGCATG
1 AAATGATG-C---AAT--AAGGCATG
*
4619560 AAATGATGCATTAAGGCATG
1 AAATGATGCAATAAGGCATG
4619580 AAA
1 AAA
4619583 GGATTCCATA
Statistics
Matches: 106, Mismatches: 17, Indels: 36
0.67 0.11 0.23
Matches are distributed among these distances:
20 46 0.43
21 3 0.03
22 4 0.04
23 5 0.05
24 4 0.04
25 3 0.03
26 41 0.39
ACGTcount: A:0.45, C:0.12, G:0.23, T:0.20
Consensus pattern (20 bp):
AAATGATGCAATAAGGCATG
Found at i:4619455 original size:46 final size:46
Alignment explanation
Indices: 4619405--4619752 Score: 417
Period size: 46 Copynumber: 7.6 Consensus size: 46
4619395 AAAAAGAATT
* * * * * *
4619405 CATAACTAAAATGAATTAAATGATGCAATAAGGCATGAAATGATGC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* *
4619451 CATAACTAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGA
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* * *
4619497 CATAACTAAAATGCATGAAATGATGCATTAGGGCATGAAAGGATGC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* * * *
4619543 CATAAATGAAACGCATGAAATGATGCATTAAGGCATGAAAGGATTC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* * **
4619589 CATAAATGAAATGCATGAAAGGAAGCATTAAGGCATGAAAGGATTT
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* * *
4619635 CATAAATGAAATGCATGAAAGGATTCATTAAGGCATGAAATGATGC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* * * * * * *
4619681 CATAAATTAAATGTAAGAAAGGATACGTTAAGGCATGAAATGATAC
1 CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
* *
4619727 CATAAATGAAACGCATGAAAGGATGC
1 CATAAATAAAATGCATGAAAGGATGC
4619753 CATAAATGAA
Statistics
Matches: 268, Mismatches: 34, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 268 1.00
ACGTcount: A:0.45, C:0.11, G:0.22, T:0.22
Consensus pattern (46 bp):
CATAAATAAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGC
Found at i:4619468 original size:26 final size:26
Alignment explanation
Indices: 4619437--4619824 Score: 104
Period size: 26 Copynumber: 16.5 Consensus size: 26
4619427 ATGCAATAAG
*
4619437 GCATGAAATGATGCCATAACTAAAAT
1 GCATGAAAGGATGCCATAACTAAAAT
*
4619463 GCATGAAAGGATG-CAT---T--AAG
1 GCATGAAAGGATGCCATAACTAAAAT
*
4619483 GCATGAAAGGATGACATAACTAAAAT
1 GCATGAAAGGATGCCATAACTAAAAT
* **
4619509 GCATGAAATGATG-CAT---T--AGG
1 GCATGAAAGGATGCCATAACTAAAAT
* * *
4619529 GCATGAAAGGATGCCATAAATGAAAC
1 GCATGAAAGGATGCCATAACTAAAAT
* *
4619555 GCATGAAATGATG-CAT---T--AAG
1 GCATGAAAGGATGCCATAACTAAAAT
* * *
4619575 GCATGAAAGGATTCCATAAATGAAAT
1 GCATGAAAGGATGCCATAACTAAAAT
* *
4619601 GCATGAAAGGAAG-CAT---T--AAG
1 GCATGAAAGGATGCCATAACTAAAAT
** * *
4619621 GCATGAAAGGATTTCATAAATGAAAT
1 GCATGAAAGGATGCCATAACTAAAAT
* *
4619647 GCATGAAAGGAT-TCAT---T--AAG
1 GCATGAAAGGATGCCATAACTAAAAT
* * *
4619667 GCATGAAATGATGCCATAAATTAAAT
1 GCATGAAAGGATGCCATAACTAAAAT
* * * * *
4619693 GTAAGAAAGGAT-ACGT---T--AAG
1 GCATGAAAGGATGCCATAACTAAAAT
* * * * *
4619713 GCATGAAATGATACCATAAATGAAAC
1 GCATGAAAGGATGCCATAACTAAAAT
* *
4619739 GCATGAAAGGATGCCATAAATGAAAT
1 GCATGAAAGGATGCCATAACTAAAAT
* *
4619765 GCATGAAATGATG-CAT---T--AAG
1 GCATGAAAGGATGCCATAACTAAAAT
* *
4619785 GCATGAAAGGATGCCATAAATGAAAT
1 GCATGAAAGGATGCCATAACTAAAAT
*
4619811 GCTTGAAAGGATGC
1 GCATGAAAGGATGC
4619825 ATTAAGGCAT
Statistics
Matches: 276, Mismatches: 44, Indels: 84
0.68 0.11 0.21
Matches are distributed among these distances:
20 92 0.33
21 20 0.07
22 7 0.03
24 7 0.03
25 21 0.08
26 129 0.47
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.22
Consensus pattern (26 bp):
GCATGAAAGGATGCCATAACTAAAAT
Found at i:4619701 original size:118 final size:116
Alignment explanation
Indices: 4619621--4619869 Score: 279
Period size: 118 Copynumber: 2.1 Consensus size: 116
4619611 AAGCATTAAG
** * *
4619621 GCATGAAAGGATTTCATAAATGAAATGCATGAAAGGATTCATTAAGGCATGAAATGATGCCATAA
1 GCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* ** * *
4619686 ATTAAATGTAAGAAAGGATACGTTAAGGCATGAAATGATACCATAAATGAAAC
66 ATGAAATGTAAGAAAGGATACCATAA-G-ATGAAATGATACAAGAAATGAAAC
*
4619739 GCATGAAAGGATGCCATAAATGAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAA
1 GCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
* * * * * *
4619804 ATGAAATGCT-TGAAAGGAT-GCATTAAGGCAT-AAATGATGCCATAAATGAAAT
66 ATGAAATG-TAAGAAAGGATACCA-TAA-G-ATGAAATGATACAAGAAATGAAAC
4619856 GCATGAAAGGATGC
1 GCATGAAAGGATGC
4619870 ATTAAGGCAT
Statistics
Matches: 117, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
117 33 0.28
118 83 0.71
119 1 0.01
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (116 bp):
GCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
ATGAAATGTAAGAAAGGATACCATAAGATGAAATGATACAAGAAATGAAAC
Found at i:4619703 original size:164 final size:161
Alignment explanation
Indices: 4619552--4619915 Score: 459
Period size: 164 Copynumber: 2.2 Consensus size: 161
4619542 CCATAAATGA
* * *
4619552 AACGCATGAAATGAT-GCAT-T-AAGGCATGAAAGGATTCCATAAATGAAATGCATGAAAGGAAG
1 AACGCATGAAATGATACCATATAAACGCATGAAAGGATGCCATAAATGAAATGCATGAAAGGAAG
** *
4619614 CATTAAGGCATGAAAGGATTTCATAAATGAAATGCATGAAAGGATTCATTAAGGCATGAAATGAT
66 CATTAAGGCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCAT-AAATGAT
* * * *
4619679 GCCATAAATTAAATGTAAGAAAGGAT-ACGTT
130 GCCATAAATGAAATGCAAGAAAGGATGCCATT
* *
4619710 AAGGCATGAAATGATACCATAAATGAAACGCATGAAAGGATGCCATAAATGAAATGCATGAAATG
1 AACGCATGAAATGATACCAT--AT-AAACGCATGAAAGGATGCCATAAATGAAATGCATGAAAGG
* *
4619775 ATGCATTAAGGCATGAAAGGATGCCATAAATGAAATGCTTGAAAGGATGCATTAAGGCATAAATG
63 AAGCATTAAGGCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATAAATG
*
4619840 ATGCCATAAATGAAATGCATGAAAGGATG-CATT
128 ATGCCATAAATGAAATGCAAGAAAGGATGCCATT
* * * *
4619873 AAGGCATGAAAGGATTCCATAAATGAAATGCATGAAAGGATGC
1 AACGCATGAAATGATACCAT--AT-AAACGCATGAAAGGATGC
4619916 ATTAATGCAT
Statistics
Matches: 182, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
158 14 0.08
159 3 0.02
162 1 0.01
163 73 0.40
164 91 0.50
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.22
Consensus pattern (161 bp):
AACGCATGAAATGATACCATATAAACGCATGAAAGGATGCCATAAATGAAATGCATGAAAGGAAG
CATTAAGGCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATAAATGATG
CCATAAATGAAATGCAAGAAAGGATGCCATT
Found at i:4619789 original size:46 final size:46
Alignment explanation
Indices: 4619739--4619947 Score: 357
Period size: 46 Copynumber: 4.6 Consensus size: 46
4619729 TAAATGAAAC
*
4619739 GCATGAAAGGATGCCATAAATGAAATGCATGAAATGATGCATTAAG
1 GCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAG
*
4619785 GCATGAAAGGATGCCATAAATGAAATGCTTGAAAGGATGCATTAAG
1 GCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAG
*
4619831 GCAT-AAATGATGCCATAAATGAAATGCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAG
* *
4619876 GCATGAAAGGATTCCATAAATGAAATGCATGAAAGGATGCATTAAT
1 GCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAG
*
4619922 GCATGAAAGGATGTCATAAATGAAAT
1 GCATGAAAGGATGCCATAAATGAAAT
4619948 TAAGGAATAA
Statistics
Matches: 153, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
45 43 0.28
46 110 0.72
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.22
Consensus pattern (46 bp):
GCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAG
Found at i:4619854 original size:91 final size:92
Alignment explanation
Indices: 4619739--4619947 Score: 357
Period size: 91 Copynumber: 2.3 Consensus size: 92
4619729 TAAATGAAAC
*
4619739 GCATGAAAGGATGCCATAAATGAAATGCATGAAATGATGCATTAAGGCATGAAAGGATGCCATAA
1 GCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
*
4619804 ATGAAATGCTTGAAAGGATGCATTAAG
66 ATGAAATGCATGAAAGGATGCATTAAG
* *
4619831 GCAT-AAATGATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATTCCATAA
1 GCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
*
4619895 ATGAAATGCATGAAAGGATGCATTAAT
66 ATGAAATGCATGAAAGGATGCATTAAG
*
4619922 GCATGAAAGGATGTCATAAATGAAAT
1 GCATGAAAGGATGCCATAAATGAAAT
4619948 TAAGGAATAA
Statistics
Matches: 109, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
91 86 0.79
92 23 0.21
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.22
Consensus pattern (92 bp):
GCATGAAAGGATGCCATAAATGAAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAA
ATGAAATGCATGAAAGGATGCATTAAG
Found at i:4620387 original size:81 final size:81
Alignment explanation
Indices: 4620290--4620471 Score: 274
Period size: 81 Copynumber: 2.2 Consensus size: 81
4620280 GGTTCTAAAA
* * *
4620290 TAAAAGACTAAAAGCCTAATTGTACATTTGGCAGAAAGGTGTTAATCATGTCAGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTACATTTGGCAAAAAGGTGTCAATCATGTCAGTTAGATGAAAG
*
4620355 GTTAAATGCTTTTGAC
66 GTTAAATGCCTTTGAC
* *
4620371 TAAAAGACTAAAAGCCTAACTGTGCATTTGGCAAAAATGTGTCAATCATGTCAGTTAGATGAAAG
1 TAAAAGACTAAAAGCCTAACTGTACATTTGGCAAAAAGGTGTCAATCATGTCAGTTAGATGAAAG
*
4620436 GTTAAATGCCTTTGAG
66 GTTAAATGCCTTTGAC
* * *
4620452 TATAAGACCAAAAGCATAAC
1 TAAAAGACTAAAAGCCTAAC
4620472 AATGCATAAT
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 91 1.00
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (81 bp):
TAAAAGACTAAAAGCCTAACTGTACATTTGGCAAAAAGGTGTCAATCATGTCAGTTAGATGAAAG
GTTAAATGCCTTTGAC
Found at i:4620534 original size:46 final size:46
Alignment explanation
Indices: 4620467--4620563 Score: 149
Period size: 46 Copynumber: 2.1 Consensus size: 46
4620457 GACCAAAAGC
* *
4620467 ATAACAATGCATAATTGGCATGAAAGGATGTCATAAACGAAAATAT
1 ATAACAATGCATAATTGGCATGAAAGGATGCCACAAACGAAAATAT
* * *
4620513 ATAACAGTGCATAATTGGCATGCAAGGATGCCACAAATGAAAATAT
1 ATAACAATGCATAATTGGCATGAAAGGATGCCACAAACGAAAATAT
4620559 ATAAC
1 ATAAC
4620564 GGTGTATTGA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.23
Consensus pattern (46 bp):
ATAACAATGCATAATTGGCATGAAAGGATGCCACAAACGAAAATAT
Found at i:4623963 original size:20 final size:20
Alignment explanation
Indices: 4623938--4624153 Score: 99
Period size: 20 Copynumber: 9.6 Consensus size: 20
4623928 ACTAAAATGA
*
4623938 ATGAAATGATGCATTAAAGC
1 ATGAAAGGATGCATTAAAGC
4623958 ATGAAAGGATGCCATAACTAAAATGC
1 ATGAAAGGATG-CAT---T-AAA-GC
* *
4623984 ATGAAATGATGCATTAAGGC
1 ATGAAAGGATGCATTAAAGC
*
4624004 ATGAAAGTATGCCATAATTGAAATGC
1 ATGAAAGGATG-C---ATT-AAA-GC
*
4624030 ATGAAAGGATGCATTAAGGC
1 ATGAAAGGATGCATTAAAGC
*
4624050 ATGAAAGGATTCCATAAATGAAATGC
1 ATGAAAGGA-TGCAT---T-AAA-GC
* * *
4624076 TTTAAAGGATGCATTAAGGC
1 ATGAAAGGATGCATTAAAGC
*
4624096 ATGAGAGGATGCCATAAATGAAATGC
1 ATGAAAGGATG-CAT---T-AAA-GC
* *
4624122 ATGAAAGGGTGCATTAAGGC
1 ATGAAAGGATGCATTAAAGC
*
4624142 ATTAAAGGATGC
1 ATGAAAGGATGC
4624154 CATAAATTAA
Statistics
Matches: 149, Mismatches: 23, Indels: 48
0.68 0.10 0.22
Matches are distributed among these distances:
20 54 0.36
21 19 0.13
22 6 0.04
24 6 0.04
25 20 0.13
26 44 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.23
Consensus pattern (20 bp):
ATGAAAGGATGCATTAAAGC
Found at i:4623974 original size:46 final size:46
Alignment explanation
Indices: 4623932--4624257 Score: 445
Period size: 46 Copynumber: 7.1 Consensus size: 46
4623922 TTCATAACTA
* * * * *
4623932 AAATGAATGAAATGATGCATTAAAGCATGAAAGGATGCCATAACTA
1 AAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATG
* * *
4623978 AAATGCATGAAATGATGCATTAAGGCATGAAAGTATGCCATAATTG
1 AAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATG
*
4624024 AAATGCATGAAAGGATGCATTAAGGCATGAAAGGATTCCATAAATG
1 AAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATG
* * *
4624070 AAATGCTTTAAAGGATGCATTAAGGCATGAGAGGATGCCATAAATG
1 AAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATG
* * *
4624116 AAATGCATGAAAGGGTGCATTAAGGCATTAAAGGATGCCATAAATT
1 AAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATG
* * * *
4624162 AAATGCATGAAAGGATACGTTAAGGAATGAAAGGATTCCATAAATG
1 AAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATG
* * * *
4624208 AAATGCATGAAATGATGCATTAAGGTATTAAAGGATGTCATAAATG
1 AAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATG
4624254 AAAT
1 AAAT
4624258 TAACGAATAA
Statistics
Matches: 247, Mismatches: 33, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 247 1.00
ACGTcount: A:0.44, C:0.10, G:0.23, T:0.24
Consensus pattern (46 bp):
AAATGCATGAAAGGATGCATTAAGGCATGAAAGGATGCCATAAATG
Found at i:4624177 original size:26 final size:25
Alignment explanation
Indices: 4623950--4624129 Score: 104
Period size: 26 Copynumber: 7.7 Consensus size: 25
4623940 GAAATGATGC
4623950 ATTAAA-GCATGAAAGGATGCCATA
1 ATTAAATGCATGAAAGGATGCCATA
* *
4623974 ACTAAAATGCATGAAATGATG-C---
1 A-TTAAATGCATGAAAGGATGCCATA
* *
4623996 ATT-AAGGCATGAAAGTATGCCATA
1 ATTAAATGCATGAAAGGATGCCATA
4624020 ATTGAAATGCATGAAAGGATG-C---
1 ATT-AAATGCATGAAAGGATGCCATA
* *
4624042 ATT-AAGGCATGAAAGGATTCCATAA
1 ATTAAATGCATGAAAGGATGCCAT-A
* * *
4624067 ATGAAATGCTTTAAAGGATG-C---
1 ATTAAATGCATGAAAGGATGCCATA
* *
4624088 ATT-AAGGCATGAGAGGATGCCATAA
1 ATTAAATGCATGAAAGGATGCCAT-A
*
4624113 ATGAAATGCATGAAAGG
1 ATTAAATGCATGAAAGG
4624130 GTGCATTAAG
Statistics
Matches: 113, Mismatches: 23, Indels: 38
0.65 0.13 0.22
Matches are distributed among these distances:
20 39 0.35
21 6 0.05
22 4 0.04
24 4 0.04
25 11 0.10
26 49 0.43
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.23
Consensus pattern (25 bp):
ATTAAATGCATGAAAGGATGCCATA
Found at i:4624742 original size:82 final size:82
Alignment explanation
Indices: 4624600--4624761 Score: 245
Period size: 82 Copynumber: 2.0 Consensus size: 82
4624590 GTTATAAAAT
* *
4624600 AAAAGACTAAAAGCCTAATTGTACATTTGACAGAAAGGTGTCAATCATGTCAATTAGATGAAAGG
1 AAAAGACCAAAAGCCTAACTGTACATTTGACAGAAAGGTGTCAATCATGTCAATTAGATGAAAGG
*
4624665 TTAAATGCCTTTGAGAA
66 TTAAATGCATTTGAGAA
* * *
4624682 AAAAGACCAAAAGCCTAACTGTGCATTT-AGCAGAAAGGTGTCAATCATGTCAGTTGGATGAAAG
1 AAAAGACCAAAAGCCTAACTGTACATTTGA-CAGAAAGGTGTCAATCATGTCAATTAGATGAAAG
*
4624746 GTTAAATTCATTTGAG
65 GTTAAATGCATTTGAG
4624762 TATAAGACTA
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 1 0.01
82 71 0.99
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.27
Consensus pattern (82 bp):
AAAAGACCAAAAGCCTAACTGTACATTTGACAGAAAGGTGTCAATCATGTCAATTAGATGAAAGG
TTAAATGCATTTGAGAA
Found at i:4624844 original size:46 final size:46
Alignment explanation
Indices: 4624777--4624874 Score: 135
Period size: 46 Copynumber: 2.1 Consensus size: 46
4624767 GACTAAGAGC
* * *
4624777 ATAACAATGCATAATTTGCATGAAATGATG-TCATAAACGAAAATAT
1 ATAACAATGCATAATTGGCATGAAAGGATGCT-ACAAACGAAAATAT
* *
4624823 ATAACAATGCATAATTGGCATGCAAGGATGCTACAAATGAAAATAT
1 ATAACAATGCATAATTGGCATGAAAGGATGCTACAAACGAAAATAT
4624869 ATAACA
1 ATAACA
4624875 GTGTATTAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
46 45 0.98
47 1 0.02
ACGTcount: A:0.48, C:0.12, G:0.14, T:0.26
Consensus pattern (46 bp):
ATAACAATGCATAATTGGCATGAAAGGATGCTACAAACGAAAATAT
Found at i:4642632 original size:18 final size:18
Alignment explanation
Indices: 4642593--4642638 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
4642583 AAATTCCAGC
**
4642593 AAAAAGAAAAGAAACACTG
1 AAAAAG-AAAGAAACAAAG
4642612 AAAAAGAAAGAAACAAAG
1 AAAAAGAAAGAAACAAAG
*
4642630 AAAAGGAAA
1 AAAAAGAAA
4642639 AAGTAAAAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 18 0.75
19 6 0.25
ACGTcount: A:0.74, C:0.07, G:0.17, T:0.02
Consensus pattern (18 bp):
AAAAAGAAAGAAACAAAG
Found at i:4648967 original size:23 final size:25
Alignment explanation
Indices: 4648941--4649005 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 25
4648931 ATGGTGACGA
4648941 ATAATTTTATATTTAT-TATT-A-TT
1 ATAATTTTAT-TTTATATATTCATTT
*
4648964 ATAATCTTATTTTTATATATTCATTT
1 ATAATTTTA-TTTTATATATTCATTT
*
4648990 ATAAATTTATTTTATA
1 ATAATTTTATTTTATA
4649006 GGATTTGAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
23 13 0.37
24 5 0.14
25 8 0.23
26 9 0.26
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (25 bp):
ATAATTTTATTTTATATATTCATTT
Found at i:4649173 original size:20 final size:20
Alignment explanation
Indices: 4649137--4649178 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
4649127 TTAACTATAA
* *
4649137 TATGGATTTATATTTTTTAT
1 TATGGATTTATAATTTTAAT
4649157 TATGGACTTT-TAATTTTAAT
1 TATGGA-TTTATAATTTTAAT
4649177 TA
1 TA
4649179 CCTTGTAAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.60
Consensus pattern (20 bp):
TATGGATTTATAATTTTAAT
Found at i:4650016 original size:2 final size:2
Alignment explanation
Indices: 4650009--4650068 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
4649999 CATTTAAGAC
4650009 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4650051 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
4650069 TCATATTTTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4673233 original size:14 final size:14
Alignment explanation
Indices: 4673214--4673248 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
4673204 TTGACTCACC
4673214 GTTGACCGTTGACT
1 GTTGACCGTTGACT
*
4673228 GTTGACCATTGACT
1 GTTGACCGTTGACT
4673242 -TTGACCG
1 GTTGACCG
4673249 AAAAAGTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.17, C:0.23, G:0.26, T:0.34
Consensus pattern (14 bp):
GTTGACCGTTGACT
Found at i:4675631 original size:24 final size:24
Alignment explanation
Indices: 4675537--4675631 Score: 82
Period size: 24 Copynumber: 4.0 Consensus size: 24
4675527 ATTTCTGACT
* *
4675537 TGAATTCTGTTCTGATACATGACC
1 TGAATTCTGTTCTGATATATGATC
* * * *
4675561 TGAATTATGTTCTAATTTCTGATC
1 TGAATTCTGTTCTGATATATGATC
* * * *
4675585 TGGATTTTGTTCTGACATCTGATC
1 TGAATTCTGTTCTGATATATGATC
* *
4675609 TGAATTCTGTTTTGATTTATGAT
1 TGAATTCTGTTCTGATATATGAT
4675632 ATCTTCGTTT
Statistics
Matches: 54, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.22, C:0.14, G:0.17, T:0.47
Consensus pattern (24 bp):
TGAATTCTGTTCTGATATATGATC
Found at i:4681257 original size:18 final size:17
Alignment explanation
Indices: 4681226--4681260 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
4681216 ACCCGTTAAC
*
4681226 TTTTACTTTGACTTTGA
1 TTTTACTTTAACTTTGA
4681243 TTTTGACTTTAACTTTGA
1 TTTT-ACTTTAACTTTGA
4681261 CCAAAAAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57
Consensus pattern (17 bp):
TTTTACTTTAACTTTGA
Found at i:4682758 original size:174 final size:175
Alignment explanation
Indices: 4682468--4682816 Score: 691
Period size: 174 Copynumber: 2.0 Consensus size: 175
4682458 ACCCTTCTGA
4682468 TTACGTAGAGCTTCCGATAAATGTCTGAATAAGATATGATCCCGATCAAATACATTCTGAATAAA
1 TTACGTAGAGCTTCCGATAAATGTCTGAATAAGATATGATCCCGATCAAATACATTCTGAATAAA
4682533 TGACAATTTCGTCAGTTAACAAACTCTTCTAATATTGATTCTAACTTCCGATATTCT-TCGGTAA
66 TGACAATTTCGTCAGTTAACAAACTCTTCTAATATTGATTCTAACTTCCGATATTCTATCGGTAA
4682597 ACTGAAGATCTGTGTTTCTCTGCCCGATAAGATTATCCAGTATCT
131 ACTGAAGATCTGTGTTTCTCTGCCCGATAAGATTATCCAGTATCT
4682642 TTACGTAGAGCTTCCGATAAATGTCTGAATAAGATATGATCCCGATCAAATACATTCTGAATAAA
1 TTACGTAGAGCTTCCGATAAATGTCTGAATAAGATATGATCCCGATCAAATACATTCTGAATAAA
4682707 TGACAATTTCGTCAGTTAACAAACTCTTCTAATATTGATTCTAACTTCCGATATTCTATCGGTAA
66 TGACAATTTCGTCAGTTAACAAACTCTTCTAATATTGATTCTAACTTCCGATATTCTATCGGTAA
4682772 ACTGAAGATCTGTGTTTCTCTGCCCGATAAGATTATCCAGTATCT
131 ACTGAAGATCTGTGTTTCTCTGCCCGATAAGATTATCCAGTATCT
4682817 CTGAATAATA
Statistics
Matches: 174, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
174 122 0.70
175 52 0.30
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.34
Consensus pattern (175 bp):
TTACGTAGAGCTTCCGATAAATGTCTGAATAAGATATGATCCCGATCAAATACATTCTGAATAAA
TGACAATTTCGTCAGTTAACAAACTCTTCTAATATTGATTCTAACTTCCGATATTCTATCGGTAA
ACTGAAGATCTGTGTTTCTCTGCCCGATAAGATTATCCAGTATCT
Found at i:4682965 original size:24 final size:24
Alignment explanation
Indices: 4682883--4682969 Score: 79
Period size: 24 Copynumber: 3.6 Consensus size: 24
4682873 ATTTCCGACT
* * *
4682883 TGAATTTTGTTCTGATA-CATGACC
1 TGAATTCTGTTTTGATATC-TGATC
* *
4682907 TGAATTCTGTTCTGATTTCTGATC
1 TGAATTCTGTTTTGATATCTGATC
* *
4682931 T-AGATTATGTTTTGATATCTTATC
1 TGA-ATTCTGTTTTGATATCTGATC
4682955 TGAATTCTGTTTTGA
1 TGAATTCTGTTTTGA
4682970 GTTCTAATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
23 1 0.02
24 49 0.94
25 2 0.04
ACGTcount: A:0.22, C:0.13, G:0.16, T:0.49
Consensus pattern (24 bp):
TGAATTCTGTTTTGATATCTGATC
Found at i:4685795 original size:7 final size:7
Alignment explanation
Indices: 4685783--4685816 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
4685773 CGACCTGACC
4685783 CGTTGAT
1 CGTTGAT
4685790 CGTTGAT
1 CGTTGAT
*
4685797 CATTGAT
1 CGTTGAT
*
4685804 CGTTAAT
1 CGTTGAT
4685811 CGTTGA
1 CGTTGA
4685817 CTTTGACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.21, C:0.15, G:0.24, T:0.41
Consensus pattern (7 bp):
CGTTGAT
Found at i:4686499 original size:806 final size:807
Alignment explanation
Indices: 4685010--4686512 Score: 2451
Period size: 806 Copynumber: 1.9 Consensus size: 807
4685000 TGACCGTGTC
* * * **
4685010 CTTTGACCGAAAAAGTTAAAATTTTCGAAAATCCATATTTTATGTTTTTCGACGTCCTGAGTCCG
1 CTTTGACCAAAAAAGTCAAAATTTTCAAAAATCCATATTTTATGTTTTTCGACGTCCTGAGTCAA
* * * *
4685075 ATTTCGAAGTTCACTTTTCAAAATTCAAACCTGAAGACCTCGAAATTATCAGTCAAACCCGTTAA
66 ATTTCGAAGTCCACTTTTCAAAATTCAAACCCGAAAACCTCGAAATTATCAGTCAAACCCCTTAA
4685140 CTTTGACTTTAACCAAAAAGTCAAAATTTTCAAAAAGTCATATTTTATGATTTTCGACGTCCTGA
131 CTTTGACTTTAACCAAAAAGTCAAAATTTTCAAAAAGTCATATTTTATGATTTTCGACGTCCTGA
*
4685205 ATCCAAATCCGAAGTCTGTTTCGTCAAATTCGAACGCGGAAAGCTGTTTTTCACTGATTAATCAC
196 ATCCAAATCCGAAGTCTGTTTCGTCAAATTCGAACGCGGAAAGCTGTTTTTAACTGATTAATCAC
* *
4685270 CCAATTAGATCCATTTTTTGCAATTAAGCTCAGTTTTTAATGAAATTTCTGTTGATATGTATCCA
261 CCAATTAGATCCAGTTTTCGCAATTAAGCTCAGTTTTTAATGAAATTTCTGTTGATATGTATCCA
** * * *
4685335 AGGAATTATTGGAGGTTGATTTCAAAATCAAGGAGATTCGAATGGAGTTTAAATGGTCGATCAGT
326 AAAAATTATTGGAGCTTGATTTCAAAATCAAGGAGATTCAAATGGAGTTTAAATGGTCGACCAGT
* * *
4685400 ATGGTATAAAAATCGAGGTAATACATTACTACCTCTTTATGTTTTATAGAACATGTTGTTAATGG
391 ATGGCACAAAAATCGAGGTAATACATTACTACCTCTTTATGCTTTATAGAACATGTTGTTAATGG
* * * *
4685465 AAAAATGCATGGATGTATATGATTGAATTATTATGCCTGTTTGATTATGGATGAACTTGAACTGA
456 AAAAATGCATGGATGTATATAATTGAACTATTATGCATGTTTGATTATGGATGAACTTGAACCGA
4685530 ATACGGATAAGCGATAAATTATGAGAATACTTCAATTAGGTAAAATTACAAAATTACCCTTATGT
521 ATACGGATAAGCGATAAATTATGAGAATACTTCAATTAGGTAAAATTACAAAATTACCCTTATGT
* *
4685595 TGTAATAAGGACAAGAATTGACTTTGGAAGTTGGATAGGAATTTTTAAAGACATATTGATATGAT
586 TATAATAAGGAAAAGAATTGACTTTGGAAGTTGGATAGGAATTTTTAAAGACATATTGATATGAT
* * *
4685660 GAAACTACTGATGTGTATAGAAAATATTGGTTTTGCTTAGGAAATCTGGATAACTGATTTGACCC
651 GAAACTACTGATGTGTACAAAAAATACTGGTTTTGCTTAGGAAATCTGGATAACTGATTTGACCC
4685725 GACCCGTTTGACCCGGTTTGACCCATTAACCCGACCCGACCGTTGACTCGACCTGACCCGTTGAT
716 GACCCGTTTGACCCGGTTTGACCCATTAACCCGACCCGACCGTTGACTCGACCTGACCCGTTGAT
4685790 CGTTGATCATTGATCGTTAATCGTTGA
781 CGTTGATCATTGATCGTTAATCGTTGA
*
4685817 CTTTGACCAAAAAAGTCAAAATTTTCAAAAAGT-CATATTTTATGTTTTTTGACGTCCTGAGTCA
1 CTTTGACCAAAAAAGTCAAAATTTTCAAAAA-TCCATATTTTATGTTTTTCGACGTCCTGAGTCA
** * * *
4685881 AA-TTCTGAAGTCCGTTTTTCAAAATTCGAACCCGAAAACCTCGAAATTTTTAGTCAAACCCCTT
65 AATTTC-GAAGTCCACTTTTCAAAATTCAAACCCGAAAACCTCGAAATTATCAGTCAAACCCCTT
* * *
4685945 GACTTTGACTTTAACCAAAAAGTTAAAATTTTCAAAAAGTCATATTTTATGTTTTTCGACGTCCT
129 AACTTTGACTTTAACCAAAAAGTCAAAATTTTCAAAAAGTCATATTTTATGATTTTCGACGTCCT
* * * * *
4686010 GAATCCAAAT-CTATAGT-TCGTTTCGTCAAATTCGAACTCGGTAAGTTGTTTTTAACTTATTAA
194 GAATCCAAATCCGA-AGTCT-GTTTCGTCAAATTCGAACGCGGAAAGCTGTTTTTAACTGATTAA
* * * *
4686073 TCACCCGATTCGATCC-GTTTTCGTAATTAAGCTCAGTTTTTAATGACATTTCTGTTGATATGTA
257 TCACCCAATTAGATCCAGTTTTCGCAATTAAGCTCAGTTTTTAATGAAATTTCTGTTGATATGTA
* * **
4686137 TCCAAAAAATTATTGGAGCTTGATTTCAAGATCGAGGACG-TTCAAATGGAGTTTAAATGGTTTA
322 TCCAAAAAATTATTGGAGCTTGATTTCAAAATCAAGGA-GATTCAAATGGAGTTTAAATGGTCGA
*
4686201 CCAGTATGGCACAAAAATGGAGGTAATACATTACTACCTCTTTATGCTTTATAGAACATGTTGTT
386 CCAGTATGGCACAAAAATCGAGGTAATACATTACTACCTCTTTATGCTTTATAGAACATGTTGTT
4686266 AATGGAAAAATGCATGGATGTATATAATTGAACTATTATGCATGTTTGATTATGGATGAACTTGA
451 AATGGAAAAATGCATGGATGTATATAATTGAACTATTATGCATGTTTGATTATGGATGAACTTGA
4686331 ACCGAATACGGATAAGCGATAAATTATGAGAATACTTCAATTAGGTAAAATTACAAAATTACCCT
516 ACCGAATACGGATAAGCGATAAATTATGAGAATACTTCAATTAGGTAAAATTACAAAATTACCCT
4686396 TATGTTATAATAAGGAAAAGAATTGACTTTGGAAGTTGGATAGGAATTTTTAAAGACATATTGAT
581 TATGTTATAATAAGGAAAAGAATTGACTTTGGAAGTTGGATAGGAATTTTTAAAGACATATTGAT
4686461 ATGATGAAACTACTGATGTGTACAAAAAATACTGGTTTTGCTTAGGAAATCT
646 ATGATGAAACTACTGATGTGTACAAAAAATACTGGTTTTGCTTAGGAAATCT
4686513 AAATAATCAA
Statistics
Matches: 639, Mismatches: 52, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
806 402 0.63
807 236 0.37
808 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (807 bp):
CTTTGACCAAAAAAGTCAAAATTTTCAAAAATCCATATTTTATGTTTTTCGACGTCCTGAGTCAA
ATTTCGAAGTCCACTTTTCAAAATTCAAACCCGAAAACCTCGAAATTATCAGTCAAACCCCTTAA
CTTTGACTTTAACCAAAAAGTCAAAATTTTCAAAAAGTCATATTTTATGATTTTCGACGTCCTGA
ATCCAAATCCGAAGTCTGTTTCGTCAAATTCGAACGCGGAAAGCTGTTTTTAACTGATTAATCAC
CCAATTAGATCCAGTTTTCGCAATTAAGCTCAGTTTTTAATGAAATTTCTGTTGATATGTATCCA
AAAAATTATTGGAGCTTGATTTCAAAATCAAGGAGATTCAAATGGAGTTTAAATGGTCGACCAGT
ATGGCACAAAAATCGAGGTAATACATTACTACCTCTTTATGCTTTATAGAACATGTTGTTAATGG
AAAAATGCATGGATGTATATAATTGAACTATTATGCATGTTTGATTATGGATGAACTTGAACCGA
ATACGGATAAGCGATAAATTATGAGAATACTTCAATTAGGTAAAATTACAAAATTACCCTTATGT
TATAATAAGGAAAAGAATTGACTTTGGAAGTTGGATAGGAATTTTTAAAGACATATTGATATGAT
GAAACTACTGATGTGTACAAAAAATACTGGTTTTGCTTAGGAAATCTGGATAACTGATTTGACCC
GACCCGTTTGACCCGGTTTGACCCATTAACCCGACCCGACCGTTGACTCGACCTGACCCGTTGAT
CGTTGATCATTGATCGTTAATCGTTGA
Found at i:4688210 original size:12 final size:12
Alignment explanation
Indices: 4688195--4688264 Score: 52
Period size: 12 Copynumber: 5.8 Consensus size: 12
4688185 GATACATTAC
4688195 CTGAATTCTGTT
1 CTGAATTCTGTT
* * *
4688207 CTGATTTTTGAT
1 CTGAATTCTGTT
*
4688219 CTGGATTCTGTT
1 CTGAATTCTGTT
*
4688231 CTG-ATATCTGAT
1 CTGAAT-TCTGTT
*
4688243 CTGGATTCTGTT
1 CTGAATTCTGTT
* *
4688255 TTGATTTCTG
1 CTGAATTCTG
4688265 ATATCTCCAT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
11 2 0.05
12 40 0.91
13 2 0.05
ACGTcount: A:0.14, C:0.14, G:0.20, T:0.51
Consensus pattern (12 bp):
CTGAATTCTGTT
Found at i:4688226 original size:24 final size:24
Alignment explanation
Indices: 4688199--4688266 Score: 109
Period size: 24 Copynumber: 2.8 Consensus size: 24
4688189 CATTACCTGA
*
4688199 ATTCTGTTCTGATTTTTGATCTGG
1 ATTCTGTTCTGATTTCTGATCTGG
*
4688223 ATTCTGTTCTGATATCTGATCTGG
1 ATTCTGTTCTGATTTCTGATCTGG
*
4688247 ATTCTGTTTTGATTTCTGAT
1 ATTCTGTTCTGATTTCTGAT
4688267 ATCTCCATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.15, C:0.13, G:0.19, T:0.53
Consensus pattern (24 bp):
ATTCTGTTCTGATTTCTGATCTGG
Found at i:4695563 original size:138 final size:135
Alignment explanation
Indices: 4695394--4696493 Score: 963
Period size: 138 Copynumber: 8.0 Consensus size: 135
4695384 CCCTATAACG
* * *
4695394 TTTAATTTATTCAAATCAATAATTG-GTTAAAATTGACTAATTTAATTATTAGAGCCTCCATTTT
1 TTTAA-TTATTCGAATCAATAA-TGAATTAAAATTGAATAATTTAA-TATTAGAGCCTCCATTTT
* * * * * *
4695458 TAGGTTTAATTTCATACTTAGTCCTTTAATTTAGCAGAA-GTTTAATTTGATCCTCGCATTTACT
63 T-GGCTTAATTTCATACTTAGTCCTTTAATTTAG-AGAATTTTTAATTTGGTTCTCAC-TTTGCT
*
4695522 CGATGTTCCAT
125 CGAGGTTCCAT
* ** * * *
4695533 TTTAATTATTCGAATCAATAATGAATTAAAATTGACTAGGTTAATATTATAACCTACATTTTTAG
1 TTTAATTATTCGAATCAATAATGAATTAAAATTGAATAATTTAATATTAGAGCCTCCATTTTT-G
* * * * * * * *
4695598 TCTTATTTTAAAATTTAGTTCTTTAATTTAAGAGAATTTTTAATTTGGTTCTCGCTTATGCTCAA
65 GCTTAATTTCATACTTAGTCCTTTAATTT-AGAGAATTTTTAATTTGGTTCTCACTT-TGCTCGA
**
4695663 GGTTCTGT
128 GGTTCCAT
* ** *
4695671 TTTAATTATTCGAATCAATAATTAATT-AAATTGAATAGGTTAATATTTAGAGCCTCCATTTTAG
1 TTTAATTATTCGAATCAATAATGAATTAAAATTGAATAATTTAATA-TTAGAGCCTCCATTTTTG
* * *
4695735 GCTCAATTTTAT-CTTAGTCCTTTAATTTAGGGGAATTTTTAATTTGG-TCATCACTTTTGCTCG
65 GCTTAATTTCATACTTAGTCCTTTAATTTA-GAGAATTTTTAATTTGGTTC-TCAC-TTTGCTCG
4695798 AGGTTCCAT
127 AGGTTCCAT
* * * **
4695807 TTTTATTATTCGAATCAATAATGGATTAAAATTGACTAGGTTAATATTAGAGCCTCCATTTTTGC
1 TTTAATTATTCGAATCAATAATGAATTAAAATTGAATAATTTAATATTAGAGCCTCCATTTTTG-
* * * * *
4695872 ACTTATTTTCA-AATCTAGTTCTTTAATTTAAGAGAATTTTTAATTTGATTCTCACTTATGCTCG
65 GCTTAATTTCATACT-TAGTCCTTTAATTT-AGAGAATTTTTAATTTGGTTCTCACTT-TGCTCG
* *
4695936 AGCTTCTAT
127 AGGTTCCAT
* ** * *
4695945 TTTAATTATTCGAATCAATAATTAATTTTAATT-AATTATGTTAATATTTAGAGCCCCCATTTTT
1 TTTAATTATTCGAATCAATAATGAATTAAAATTGAATAAT-TTAATA-TTAGAGCCTCCATTTTT
* * * *
4696009 GGCGTAATTTTATACTTAGTCCTTTAATTCAGAGGAATTTTTAATTTGGTCCTCACTTTTGCTCG
64 GGCTTAATTTCATACTTAGTCCTTTAATTTAGA-GAATTTTTAATTTGGTTCTCAC-TTTGCTCG
4696074 AGGTTCCAT
127 AGGTTCCAT
* * * *
4696083 TTTAATTATTCGAAACAATAATTG-ATTAAAATTGACTAGTTTAATATTAGAGCCTCTATTTTTA
1 TTTAATTATTCGAATCAATAA-TGAATTAAAATTGAATAATTTAATATTAGAGCCTCCATTTTT-
* * * * * *
4696147 GGCTTATTTTCAAATTTAGTTCTTTAATTTAGGAAAATTTTTAATTTGGTTCTCACTTATGATCG
64 GGCTTAATTTCATACTTAGTCCTTTAATTTA-GAGAATTTTTAATTTGGTTCTCACTT-TGCTCG
*
4696212 AGGTTCTAT
127 AGGTTCCAT
** * * * *
4696221 TTTAATTATTTAAATCAATATTTAATTAAAATTGAAT-ATGTTAATATTTAGAGCCTACATATTT
1 TTTAATTATTCGAATCAATAATGAATTAAAATTGAATAAT-TTAATA-TTAGAGCCTCCATTTTT
* * *
4696285 GG-TGTAATTTTATACTTTGTCCTTTAATTCAGAGGAATTTTTAATTTGGTTCTCACTTTGTCTC
64 GGCT-TAATTTCATACTTAGTCCTTTAATTTAGA-GAATTTTTAATTTGGTTCTCACTTTG-CTC
*
4696349 AAGGTTCCAT
126 GAGGTTCCAT
* * *
4696359 TTTATTTATTTGAATAAATAAT-AA-T--AATTGAAT-ATGTTAATATATAGATG-CTCCATTTT
1 TTTAATTATTCGAATCAATAATGAATTAAAATTGAATAAT-TTAATAT-TAGA-GCCTCCATTTT
* * * * * * * * * *
4696418 TGGTTTAATTCCAAAATTAGCCCTTTAATTTAGAATAATTTTTGATGTGGTCCTCGATTTCGTGC
63 TGGCTTAATTTCATACTTAGTCCTTTAATTTAG-AGAATTTTTAATTTGGTTCTC-ACTT--TGC
4696483 TCGAGGTTCCA
124 TCGAGGTTCCA
4696494 GATTATTCAA
Statistics
Matches: 787, Mismatches: 136, Indels: 79
0.79 0.14 0.08
Matches are distributed among these distances:
133 1 0.00
134 68 0.09
135 9 0.01
136 98 0.12
137 135 0.17
138 427 0.54
139 49 0.06
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (135 bp):
TTTAATTATTCGAATCAATAATGAATTAAAATTGAATAATTTAATATTAGAGCCTCCATTTTTGG
CTTAATTTCATACTTAGTCCTTTAATTTAGAGAATTTTTAATTTGGTTCTCACTTTGCTCGAGGT
TCCAT
Found at i:4696129 original size:276 final size:276
Alignment explanation
Indices: 4695394--4696380 Score: 1312
Period size: 276 Copynumber: 3.6 Consensus size: 276
4695384 CCCTATAACG
* ** * *
4695394 TTTAATTTATTCAAATCAATAATTGGTTAAAATTGACTAAT-TTAAT-TATTAGAGCCTCCATTT
1 TTTAA-TTATTCGAATCAATAATTAATTTAAATTGAAT-ATGTTAATAT-TTAGAGCCTCCATTT
** * * * * * * *
4695457 TTAGGTTTAATTTCATACTTAGTCCTTTAATTTAGCA-GAA-GTTTAATTTGATCCTCGCATTTA
63 TT-GGCGTAATTTTATACTTAGTCCTTTAATTCAG-AGGAATTTTTAATTTGGTCCTCACTTTTG
* *
4695520 CTCGATGTTCCATTTTAATTATTCGAATCAATAA-TGAATTAAAATTGACTAGGTTAATATTATA
126 CTCGAGGTTCCATTTTAATTATTCGAATCAATAATTG-ATTAAAATTGACTAGGTTAATATTAGA
* * * *
4695584 ACCTACATTTTTAGTCTTATTTTAAAATTTAGTTCTTTAATTTAAGAGAATTTTTAATTTGGTTC
190 GCCTCCATTTTTAGACTTATTTTCAAATTTAGTTCTTTAATTTAAGAGAATTTTTAATTTGGTTC
* * *
4695649 TCGCTTATGCTCAAGGTTCTGT
255 TCACTTATGCTCGAGGTTCTAT
* *
4695671 TTTAATTATTCGAATCAATAATTAA-TTAAATTGAATAGGTTAATATTTAGAGCCTCCATTTTAG
1 TTTAATTATTCGAATCAATAATTAATTTAAATTGAATATGTTAATATTTAGAGCCTCCATTTTTG
* * *
4695735 GC-TCAATTTTAT-CTTAGTCCTTTAATTTAGGGGAATTTTTAATTTGGTCATCACTTTTGCTCG
66 GCGT-AATTTTATACTTAGTCCTTTAATTCAGAGGAATTTTTAATTTGGTCCTCACTTTTGCTCG
* *
4695798 AGGTTCCATTTTTATTATTCGAATCAATAATGGATTAAAATTGACTAGGTTAATATTAGAGCCTC
130 AGGTTCCATTTTAATTATTCGAATCAATAATTGATTAAAATTGACTAGGTTAATATTAGAGCCTC
* *
4695863 CATTTTT-GCACTTATTTTCAAATCTAGTTCTTTAATTTAAGAGAATTTTTAATTTGATTCTCAC
195 CATTTTTAG-ACTTATTTTCAAATTTAGTTCTTTAATTTAAGAGAATTTTTAATTTGGTTCTCAC
*
4695927 TTATGCTCGAGCTTCTAT
259 TTATGCTCGAGGTTCTAT
* *
4695945 TTTAATTATTCGAATCAATAATTAATTTTAATT-AATTATGTTAATATTTAGAGCCCCCATTTTT
1 TTTAATTATTCGAATCAATAATTAATTTAAATTGAA-TATGTTAATATTTAGAGCCTCCATTTTT
4696009 GGCGTAATTTTATACTTAGTCCTTTAATTCAGAGGAATTTTTAATTTGGTCCTCACTTTTGCTCG
65 GGCGTAATTTTATACTTAGTCCTTTAATTCAGAGGAATTTTTAATTTGGTCCTCACTTTTGCTCG
* *
4696074 AGGTTCCATTTTAATTATTCGAAACAATAATTGATTAAAATTGACTAGTTTAATATTAGAGCCTC
130 AGGTTCCATTTTAATTATTCGAATCAATAATTGATTAAAATTGACTAGGTTAATATTAGAGCCTC
* * * *
4696139 TATTTTTAGGCTTATTTTCAAATTTAGTTCTTTAATTTAGGAAAATTTTTAATTTGGTTCTCACT
195 CATTTTTAGACTTATTTTCAAATTTAGTTCTTTAATTTAAGAGAATTTTTAATTTGGTTCTCACT
*
4696204 TATGATCGAGGTTCTAT
260 TATGCTCGAGGTTCTAT
** * * * *
4696221 TTTAATTATTTAAATCAATATTTAATTAAAATTGAATATGTTAATATTTAGAGCCTACATATTTG
1 TTTAATTATTCGAATCAATAATTAATTTAAATTGAATATGTTAATATTTAGAGCCTCCATTTTTG
* * * *
4696286 GTGTAATTTTATACTTTGTCCTTTAATTCAGAGGAATTTTTAATTTGGTTCTCAC-TTTGTCTCA
66 GCGTAATTTTATACTTAGTCCTTTAATTCAGAGGAATTTTTAATTTGGTCCTCACTTTTG-CTCG
* * *
4696350 AGGTTCCATTTTATTTATTTGAATAAATAAT
130 AGGTTCCATTTTAATTATTCGAATCAATAAT
4696381 AATAATTGAA
Statistics
Matches: 631, Mismatches: 65, Indels: 29
0.87 0.09 0.04
Matches are distributed among these distances:
273 23 0.04
274 187 0.30
275 77 0.12
276 336 0.53
277 8 0.01
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.46
Consensus pattern (276 bp):
TTTAATTATTCGAATCAATAATTAATTTAAATTGAATATGTTAATATTTAGAGCCTCCATTTTTG
GCGTAATTTTATACTTAGTCCTTTAATTCAGAGGAATTTTTAATTTGGTCCTCACTTTTGCTCGA
GGTTCCATTTTAATTATTCGAATCAATAATTGATTAAAATTGACTAGGTTAATATTAGAGCCTCC
ATTTTTAGACTTATTTTCAAATTTAGTTCTTTAATTTAAGAGAATTTTTAATTTGGTTCTCACTT
ATGCTCGAGGTTCTAT
Found at i:4696487 original size:550 final size:548
Alignment explanation
Indices: 4695442--4696472 Score: 1363
Period size: 550 Copynumber: 1.9 Consensus size: 548
4695432 AATTTAATTA
* ** *
4695442 TTAGAGCCTCCATTTTTAGGTTTAATTTCATACTTAGTCCTTTAATTTAGCAGAAGTTTAATTTG
1 TTAGAGCCCCCATTTTTAGGCGTAATTTCATACTTAGTCCTTTAATTCAGCAGAAGTTTAATTTG
* * *
4695507 ATCCTCGCATTTACTCGATGTTCCATTTTAATTATTCGAATCAATAATGAATTAAAATTGACTAG
66 ATCCTCACATTTACTCGAGGTTCCATTTTAATTATTCGAAACAATAATGAATTAAAATTGACTAG
* * *
4695572 GTTAATATTATAACCTACATTTTTAGTCTTATTTTAAAATTTAGTTCTTTAATTTAAGAGAATTT
131 GTTAATATTAGAACCTACATTTTTAGGCTTATTTTAAAATTTAGTTCTTTAATTTAAGAAAATTT
* * * *
4695637 TTAATTTGGTTCTCGCTTATGCTCAAGGTTCTGTTTTAATTATTCGAATCAATAATTAATTAAAT
196 TTAATTTGGTTCTCACTTATGATCAAGGTTCTATTTTAATTATTCAAATCAATAATTAATTAAAT
* * *
4695702 TGAATAGGTTAATATTTAGAGCCTCCATTTTAGGCTCAATTTTATCTTAGTCCTTTAATTTAGGG
261 TGAATAGGTTAATATTTAGAGCCTACATTTTAGGCTCAATTTTATCTTAGTCCTTTAATTCAGAG
* *
4695767 GAATTTTTAATTTGGTCATCACTTTTGCTCGAGGTTCCATTTTTATTATTCGAATCAATAATGGA
326 GAATTTTTAATTTGGTCATCACTTTTGCTCAAGGTTCCATTTTTATTATTCGAATAAATAAT-GA
* * * **
4695832 TTAAAATTGACTAGGTTAATATTAGAGCCTCCATTTTTGCACTTATTTTCAAATCTAGTTCTTTA
390 -TAAAATTGAATAGGTTAATATTAGAGCCTCCATTTTTGCACTTAATTCCAAATCTAGCCCTTTA
* *
4695897 ATTTAAGAGAATTTTTAATTTGATTCTCACTTATGCTCGAGCTTCTATTTTAATTATTCGAATCA
454 ATTTAAGAGAATTTTTAATGTGATCCTCACTTATGCTCGAGCTTCTATTTTAATTATTCGAATCA
4695962 ATAATTAATTTTAATTAATTATGTTAATAT
519 ATAATTAATTTTAATTAATTATGTTAATAT
* *
4695992 TTAGAGCCCCCATTTTT-GGCGTAATTTTATACTTAGTCCTTTAATTCAG-AGGAATTTTTAATT
1 TTAGAGCCCCCATTTTTAGGCGTAATTTCATACTTAGTCCTTTAATTCAGCA-GAA-GTTTAATT
* * *
4696055 TGGTCCTCACTTTTGCTCGAGGTTCCATTTTAATTATTCGAAACAATAATTG-ATTAAAATTGAC
64 TGATCCTCACATTTACTCGAGGTTCCATTTTAATTATTCGAAACAATAA-TGAATTAAAATTGAC
* * * *
4696119 TAGTTTAATATTAGAGCCT-CTATTTTTAGGCTTATTTTCAAATTTAGTTCTTTAATTTAGGAAA
128 TAGGTTAATATTAGAACCTAC-ATTTTTAGGCTTATTTTAAAATTTAGTTCTTTAATTTAAGAAA
* * *
4696183 ATTTTTAATTTGGTTCTCACTTATGATCGAGGTTCTATTTTAATTATTTAAATCAATATTTAATT
192 ATTTTTAATTTGGTTCTCACTTATGATCAAGGTTCTATTTTAATTATTCAAATCAATAATTAATT
* * *
4696248 AAAATTGAATATGTTAATATTTAGAGCCTACATATTT-GG-TGTAATTTTATACTTTGTCCTTTA
257 -AAATTGAATAGGTTAATATTTAGAGCCTACAT-TTTAGGCT-CAATTTTAT-CTTAGTCCTTTA
*
4696311 ATTCAGAGGAATTTTTAATTTGGTTC-TCAC-TTTGTCTCAAGGTTCCA-TTTTATTTATTTGAA
318 ATTCAGAGGAATTTTTAATTTGG-TCATCACTTTTG-CTCAAGGTTCCATTTTTA-TTATTCGAA
* * **
4696373 TAAATAAT-A-ATAATTGAATATGTTAATATATAGATG-CTCCATTTTTG-GTTTAATTCCAAAA
380 TAAATAATGATAAAATTGAATAGGTTAATAT-TAGA-GCCTCCATTTTTGCACTTAATTCC-AAA
* * *
4696434 T-TAGCCCTTTAATTT-AGAATAATTTTTGATGTGGTCCTC
442 TCTAGCCCTTTAATTTAAG-AGAATTTTTAATGTGATCCTC
4696473 GATTTCGTGC
Statistics
Matches: 417, Mismatches: 49, Indels: 32
0.84 0.10 0.06
Matches are distributed among these distances:
547 2 0.00
548 52 0.12
549 51 0.12
550 194 0.47
551 51 0.12
552 65 0.16
553 2 0.00
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.46
Consensus pattern (548 bp):
TTAGAGCCCCCATTTTTAGGCGTAATTTCATACTTAGTCCTTTAATTCAGCAGAAGTTTAATTTG
ATCCTCACATTTACTCGAGGTTCCATTTTAATTATTCGAAACAATAATGAATTAAAATTGACTAG
GTTAATATTAGAACCTACATTTTTAGGCTTATTTTAAAATTTAGTTCTTTAATTTAAGAAAATTT
TTAATTTGGTTCTCACTTATGATCAAGGTTCTATTTTAATTATTCAAATCAATAATTAATTAAAT
TGAATAGGTTAATATTTAGAGCCTACATTTTAGGCTCAATTTTATCTTAGTCCTTTAATTCAGAG
GAATTTTTAATTTGGTCATCACTTTTGCTCAAGGTTCCATTTTTATTATTCGAATAAATAATGAT
AAAATTGAATAGGTTAATATTAGAGCCTCCATTTTTGCACTTAATTCCAAATCTAGCCCTTTAAT
TTAAGAGAATTTTTAATGTGATCCTCACTTATGCTCGAGCTTCTATTTTAATTATTCGAATCAAT
AATTAATTTTAATTAATTATGTTAATAT
Found at i:4698613 original size:52 final size:52
Alignment explanation
Indices: 4698543--4698646 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
4698533 TAAAATATCT
4698543 TATAACTAATATTAAGGTAATCCAAATATCAGTATCAAAAGCAATATACGCA
1 TATAACTAATATTAAGGTAATCCAAATATCAGTATCAAAAGCAATATACGCA
*
4698595 TATAACTAATATTGAGGTAATCCAAATATCAGTATCAAAAGCAATATACGCA
1 TATAACTAATATTAAGGTAATCCAAATATCAGTATCAAAAGCAATATACGCA
4698647 GTAAAATCAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.27
Consensus pattern (52 bp):
TATAACTAATATTAAGGTAATCCAAATATCAGTATCAAAAGCAATATACGCA
Found at i:4701686 original size:18 final size:18
Alignment explanation
Indices: 4701663--4701697 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
4701653 ATACTATGAC
*
4701663 ACAATTATAATATGGAAA
1 ACAATTATAACATGGAAA
4701681 ACAATTATAACATGGAA
1 ACAATTATAACATGGAA
4701698 CTATATAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.09, G:0.11, T:0.26
Consensus pattern (18 bp):
ACAATTATAACATGGAAA
Found at i:4702997 original size:43 final size:43
Alignment explanation
Indices: 4702923--4703022 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 43
4702913 TAACTTCATC
* *
4702923 TGTGAAGAATCAAATAGAATGACAATATTGATCCAACTCCTTT-
1 TGTGAAGAATCAAACAAAATGACAATATTGATCCAACT-CTTTA
* * * * *
4702966 TGTGAAGAATCAAACAAAATGTCAGTGTTGATCTACCTCTTTA
1 TGTGAAGAATCAAACAAAATGACAATATTGATCCAACTCTTTA
4703009 TGTGATAGAATCAA
1 TGTGA-AGAATCAA
4703023 GAAAAATAAG
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 4 0.08
43 36 0.75
44 8 0.17
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (43 bp):
TGTGAAGAATCAAACAAAATGACAATATTGATCCAACTCTTTA
Found at i:4703072 original size:129 final size:128
Alignment explanation
Indices: 4702689--4703115 Score: 409
Period size: 129 Copynumber: 3.3 Consensus size: 128
4702679 TGACGTGAAA
* * * *
4702689 AATATTGATCCCACTCCTTCTATAAAGAATCAAAC-AAATGGTCGATGTTAATCTACCTCATTTT
1 AATATTGATCCAACTCCTTCTGTGAAGAATCAAACAAAAT-GTCGATGTTGATCTACCTC-TTTT
* * * * * *
4702753 GTGATAGAATCGAGCAAAATAAGATTACGGTCT-ACTTCTTCTGTAAAGAAACTG-ACGAAATGA
64 GTGATAGAATCAAGAAAAATAAGATTACGCTCTAACTTCTTCTGTGAA-AAATTGAACGGAATGA
4702816 -
128 C
* * * * *
4702816 AACTGTTGATCCAACTCCTTCTGTGAATAATAAAACAAAATGTTGAT-TCTGATCTACCTCCTTC
1 AA-TATTGATCCAACTCCTTCTGTGAAGAATCAAACAAAATGTCGATGT-TGATCTACCT-CTTT
* * * * ** **
4702880 TATGATAGAAT-AGAGAAAAATAAGATTATGCTCTAACTTCATCTGTGAAGAATCAAATAGAATG
63 TGTGATAGAATCA-AGAAAAATAAGATTACGCTCTAACTTCTTCTGTGAAAAATTGAACGGAATG
4702944 AC
127 AC
*
4702946 AATATTGATCCAACTCCTTTTGTGAAGAATCAAACAAAATGTC-AGTGTTGATCTACCTCTTTAT
1 AATATTGATCCAACTCCTTCTGTGAAGAATCAAACAAAATGTCGA-TGTTGATCTACCTCTTT-T
* * *
4703010 GTGATAGAATCAAGAAAAATAAGATTACACTCTAACTTCTTCTATGAATAATTGAACGGAATGAC
64 GTGATAGAATCAAGAAAAATAAGATTACGCTCTAACTTCTTCTGTGAAAAATTGAACGGAATGAC
*** * * * * *
4703075 ACCGTTGACCCAAATCCTTTTGTTAAGAATTAAACAAAATG
1 AATATTGATCCAACTCCTTCTGTGAAGAATCAAACAAAATG
4703116 ATCTACAAAA
Statistics
Matches: 242, Mismatches: 46, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
127 3 0.01
128 77 0.32
129 158 0.65
130 4 0.02
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (128 bp):
AATATTGATCCAACTCCTTCTGTGAAGAATCAAACAAAATGTCGATGTTGATCTACCTCTTTTGT
GATAGAATCAAGAAAAATAAGATTACGCTCTAACTTCTTCTGTGAAAAATTGAACGGAATGAC
Found at i:4703724 original size:12 final size:12
Alignment explanation
Indices: 4703709--4703767 Score: 70
Period size: 12 Copynumber: 5.2 Consensus size: 12
4703699 TTCACTTTAG
4703709 TTTTTCTTTTTT
1 TTTTTCTTTTTT
*
4703721 TTTTTC--TTTC
1 TTTTTCTTTTTT
4703731 TTTTTC-TTTTT
1 TTTTTCTTTTTT
*
4703742 CTTTTCTTTTTT
1 TTTTTCTTTTTT
*
4703754 CTTTTCTTTTTT
1 TTTTTCTTTTTT
4703766 TT
1 TT
4703768 CACTTTCTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.22
11 8 0.20
12 24 0.59
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:4703744 original size:28 final size:29
Alignment explanation
Indices: 4703709--4703764 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
4703699 TTCACTTTAG
*
4703709 TTTTTCTTTTTTTTTTTC-TTTCTTTTTC
1 TTTTTCTTTTCTTTTTTCTTTTCTTTTTC
4703737 TTTTTCTTTTCTTTTTTCTTTTCTTTTT
1 TTTTTCTTTTCTTTTTTCTTTTCTTTTT
4703765 TTTCACTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (29 bp):
TTTTTCTTTTCTTTTTTCTTTTCTTTTTC
Found at i:4703750 original size:33 final size:32
Alignment explanation
Indices: 4703710--4703777 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
4703700 TCACTTTAGT
* **
4703710 TTTTCTTTTTTTTTTTCTTTCTTTTTCTTTTTC
1 TTTTCTTTTTTCTTTTCTTT-TTTTTCACTTTC
4703743 TTTTCTTTTTTCTTTTCTTTTTTTTCACTTTC
1 TTTTCTTTTTTCTTTTCTTTTTTTTCACTTTC
4703775 TTT
1 TTT
4703778 GTTGTTCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.01, C:0.16, G:0.00, T:0.82
Consensus pattern (32 bp):
TTTTCTTTTTTCTTTTCTTTTTTTTCACTTTC
Found at i:4703773 original size:28 final size:28
Alignment explanation
Indices: 4703714--4703777 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
4703704 TTTAGTTTTT
* **
4703714 CTTTTTTTTTTTCTTTCTTTTTCTTTTT
1 CTTTTCTTTTTTCTTTCTTTTTCTTTCA
4703742 CTTTTCTTTTTTCTTTTCTTTTT-TTTCA
1 CTTTTCTTTTTTC-TTTCTTTTTCTTTCA
4703770 C-TTTCTTT
1 CTTTTCTTT
4703778 GTTGTTCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 7 0.22
28 16 0.50
29 9 0.28
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (28 bp):
CTTTTCTTTTTTCTTTCTTTTTCTTTCA
Found at i:4710427 original size:89 final size:91
Alignment explanation
Indices: 4710264--4710446 Score: 280
Period size: 89 Copynumber: 2.0 Consensus size: 91
4710254 AACTGCGTCC
* * * *
4710264 GTAGGGCTTACCCTAAGCACACAAAAAAAATGAGCTAACCTAAGGATATTCCTTGGTGCCTATGG
1 GTAGGGCTTACCCTAAGCACACAAAAAAAATGAACCAACCTAAGGATATACCTTGGGGCCTATGG
*
4710329 GCCTACCCAAGGGTATCCTTAGGTCT
66 GCCAACCCAAGGGTATCCTTAGGTCT
* * *
4710355 GTAGGG-TTATCCTAAGCACACAACAAAGA-GAACCAACCTAAGGATATACCTTGGGGCCTATGG
1 GTAGGGCTTACCCTAAGCACACAAAAAAAATGAACCAACCTAAGGATATACCTTGGGGCCTATGG
4710418 GCCAACCCAAGGGTATCCTTAGGTCT
66 GCCAACCCAAGGGTATCCTTAGGTCT
4710444 GTA
1 GTA
4710447 AAGACTTACC
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
89 58 0.69
90 20 0.24
91 6 0.07
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (91 bp):
GTAGGGCTTACCCTAAGCACACAAAAAAAATGAACCAACCTAAGGATATACCTTGGGGCCTATGG
GCCAACCCAAGGGTATCCTTAGGTCT
Found at i:4712983 original size:21 final size:23
Alignment explanation
Indices: 4712959--4713015 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
4712949 AGTCAACGTT
*
4712959 CGGTCAACA-GTC-GTTCAATGG
1 CGGTCAACAGGTCTGGTCAATGG
4712980 CGGTCAA-AGGTCTGGTCAATGG
1 CGGTCAACAGGTCTGGTCAATGG
4713002 CGGTCAACGAGGTC
1 CGGTCAAC-AGGTC
4713016 AACGAGGTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
20 1 0.03
21 10 0.32
22 15 0.48
24 5 0.16
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.21
Consensus pattern (23 bp):
CGGTCAACAGGTCTGGTCAATGG
Found at i:4713017 original size:9 final size:9
Alignment explanation
Indices: 4713003--4713027 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
4712993 GGTCAATGGC
4713003 GGTCAACGA
1 GGTCAACGA
4713012 GGTCAACGA
1 GGTCAACGA
4713021 GGTCAAC
1 GGTCAAC
4713028 AGTCGGGTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.24, G:0.32, T:0.12
Consensus pattern (9 bp):
GGTCAACGA
Found at i:4718286 original size:27 final size:27
Alignment explanation
Indices: 4718234--4718334 Score: 82
Period size: 27 Copynumber: 3.7 Consensus size: 27
4718224 AAGAATACAA
* * *
4718234 AAATAATGATTTAAAGGGAA-CTAAAAG
1 AAATAAAGATTAAAAGGAAAGC-AAAAG
*
4718261 AAATAAAGATTAAAATGAAAGCAAAAGG
1 AAATAAAGATTAAAAGGAAAGCAAAA-G
* * **
4718289 AAA-AAATATGAAAAGGAAATTAAAA-
1 AAATAAAGATTAAAAGGAAAGCAAAAG
4718314 AGAATAAAGATTAAAAGGAAA
1 A-AATAAAGATTAAAAGGAAA
4718335 TTAAAGAATC
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
25 1 0.02
26 2 0.03
27 51 0.86
28 5 0.08
ACGTcount: A:0.64, C:0.02, G:0.17, T:0.17
Consensus pattern (27 bp):
AAATAAAGATTAAAAGGAAAGCAAAAG
Found at i:4718335 original size:27 final size:27
Alignment explanation
Indices: 4718256--4718339 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
4718246 AAAGGGAACT
* **
4718256 AAAAGAAATAAAGATTAAAATGAAAGCA
1 AAAAG-AATAAAGATTAAAAGGAAATTA
* * * *
4718284 AAAGGAAAAAATATGAAAAGGAAATTA
1 AAAAGAATAAAGATTAAAAGGAAATTA
4718311 AAAAGAATAAAGATTAAAAGGAAATTA
1 AAAAGAATAAAGATTAAAAGGAAATTA
4718338 AA
1 AA
4718340 GAATCAAAAA
Statistics
Matches: 45, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
27 41 0.91
28 4 0.09
ACGTcount: A:0.68, C:0.01, G:0.15, T:0.15
Consensus pattern (27 bp):
AAAAGAATAAAGATTAAAAGGAAATTA
Found at i:4720775 original size:41 final size:41
Alignment explanation
Indices: 4720718--4720803 Score: 145
Period size: 41 Copynumber: 2.1 Consensus size: 41
4720708 TCGACCGATA
* * *
4720718 ATGGTGATGCGTCGGTGGAGGGGAACCAAAAGTCTCCTTTG
1 ATGGTGATACGCCGGTGGAGGGGAACCAAAAGTCCCCTTTG
4720759 ATGGTGATACGCCGGTGGAGGGGAACCAAAAGTCCCCTTTG
1 ATGGTGATACGCCGGTGGAGGGGAACCAAAAGTCCCCTTTG
4720800 ATGG
1 ATGG
4720804 AGCAATCTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.23, C:0.19, G:0.36, T:0.22
Consensus pattern (41 bp):
ATGGTGATACGCCGGTGGAGGGGAACCAAAAGTCCCCTTTG
Found at i:4721328 original size:18 final size:18
Alignment explanation
Indices: 4721301--4721335 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4721291 ATATTATGAC
*
4721301 ACAATAATAATATGGAAA
1 ACAATAATAACATGGAAA
*
4721319 ACAATTATAACATGGAA
1 ACAATAATAACATGGAA
4721336 CTATATAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.09, G:0.11, T:0.23
Consensus pattern (18 bp):
ACAATAATAACATGGAAA
Found at i:4722025 original size:23 final size:23
Alignment explanation
Indices: 4721997--4722043 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
4721987 CTTACATTGT
* *
4721997 TTATGTAATTTGGGATCACGTTC
1 TTATGTAATTCGGGACCACGTTC
4722020 TTATGTAATTCGGGACCACGTTC
1 TTATGTAATTCGGGACCACGTTC
4722043 T
1 T
4722044 ATAAACGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.40
Consensus pattern (23 bp):
TTATGTAATTCGGGACCACGTTC
Found at i:4722298 original size:18 final size:18
Alignment explanation
Indices: 4722277--4722315 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
4722267 TTGAAGTCAT
*
4722277 CAATTCAAAGAAGATGAA
1 CAATTCAAAGAAAATGAA
4722295 CAATTCAAAGAAAATGAA
1 CAATTCAAAGAAAATGAA
4722313 CAA
1 CAA
4722316 CCAAACAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.59, C:0.13, G:0.13, T:0.15
Consensus pattern (18 bp):
CAATTCAAAGAAAATGAA
Found at i:4722793 original size:31 final size:31
Alignment explanation
Indices: 4722749--4722837 Score: 151
Period size: 31 Copynumber: 2.9 Consensus size: 31
4722739 CTTTTAAAAC
* *
4722749 TTGCAATACAGTCCCCCAATATTTAGTTTGT
1 TTGCAAAATAGTCCCCCAATATTTAGTTTGT
4722780 TTGCAAAATAGTCCCCCAATATTTAGTTTGT
1 TTGCAAAATAGTCCCCCAATATTTAGTTTGT
*
4722811 TTGCAAAATAGTCCCCCAACATTTAGT
1 TTGCAAAATAGTCCCCCAATATTTAGT
4722838 CTATTTGTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36
Consensus pattern (31 bp):
TTGCAAAATAGTCCCCCAATATTTAGTTTGT
Found at i:4723718 original size:18 final size:18
Alignment explanation
Indices: 4723697--4723735 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
4723687 TTGAAGTCAT
*
4723697 CAATTCAAAGAAGATGAA
1 CAATTCAAAGAAAATGAA
4723715 CAATTCAAAGAAAATGAA
1 CAATTCAAAGAAAATGAA
4723733 CAA
1 CAA
4723736 CCAAACAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.59, C:0.13, G:0.13, T:0.15
Consensus pattern (18 bp):
CAATTCAAAGAAAATGAA
Found at i:4724216 original size:31 final size:31
Alignment explanation
Indices: 4724181--4724247 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
4724171 TTCTAATACA
*
4724181 GTCCCCCAATATTTAGT-TCATTTGCAAAATG
1 GTCCCCCAACATTTAGTCT-ATTTGCAAAATG
* *
4724212 GTCCCCCAACATTTAGTCTGTTTGCAATATG
1 GTCCCCCAACATTTAGTCTATTTGCAAAATG
4724243 GTCCC
1 GTCCC
4724248 TGACCATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 31 0.97
32 1 0.03
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (31 bp):
GTCCCCCAACATTTAGTCTATTTGCAAAATG
Found at i:4726198 original size:31 final size:31
Alignment explanation
Indices: 4726155--4726229 Score: 98
Period size: 31 Copynumber: 2.4 Consensus size: 31
4726145 TAATGATGTC
* *
4726155 AAATGATT-GGGGACCATATTGTAAATAAACT
1 AAAT-ATTAGGGGACCATATTGCAAACAAACT
* *
4726186 AAATATTAGGGGACCATTTTGCAAACAAGCT
1 AAATATTAGGGGACCATATTGCAAACAAACT
4726217 AAATATTAGGGGA
1 AAATATTAGGGGA
4726230 TTGTATTGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 3 0.08
31 36 0.92
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27
Consensus pattern (31 bp):
AAATATTAGGGGACCATATTGCAAACAAACT
Found at i:4727113 original size:15 final size:15
Alignment explanation
Indices: 4727095--4727133 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
4727085 TGACCACAAA
4727095 ATCACAAGCTACATC
1 ATCACAAGCTACATC
*
4727110 ATCACATGCTACATC
1 ATCACAAGCTACATC
4727125 ATCACAAGC
1 ATCACAAGC
4727134 GACAACGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.38, C:0.33, G:0.08, T:0.21
Consensus pattern (15 bp):
ATCACAAGCTACATC
Found at i:4728018 original size:105 final size:106
Alignment explanation
Indices: 4727875--4728081 Score: 256
Period size: 105 Copynumber: 2.0 Consensus size: 106
4727865 TGCTAAGTGC
* * * *
4727875 TACACTTTTTGATAGATGTACATACTTACATCAGTGTAACTATGTGTTAAATGTTACA-CTTTTA
1 TACACTTTTTGAGAGATGTACATACTTACATCAGTGTAACTATGTATTAAATGCTACATATTTTA
* *
4727939 GTAGATGTACATACTTACACCGATGTAAGTATGTGTTGTGT
66 GGAGATGTACATACTTACACCGACGTAAGTATGTGTTGTGT
* * * * *
4727980 TACACTTTTTGGGAGATGTACATGCTTACA-CTGGTGTAAGTATGTATTAAGTGCTACATATTTT
1 TACACTTTTTGAGAGATGTACATACTTACATC-AGTGTAACTATGTATTAAATGCTACATATTTT
* * * *
4728044 GGGAGATGTATATATTTACACCGGCGTAAGTATGTGTT
65 AGGAGATGTACATACTTACACCGACGTAAGTATGTGTT
4728082 AAATGCTACA
Statistics
Matches: 85, Mismatches: 15, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
104 1 0.01
105 48 0.56
106 36 0.42
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (106 bp):
TACACTTTTTGAGAGATGTACATACTTACATCAGTGTAACTATGTATTAAATGCTACATATTTTA
GGAGATGTACATACTTACACCGACGTAAGTATGTGTTGTGT
Found at i:4728063 original size:54 final size:54
Alignment explanation
Indices: 4727827--4728138 Score: 271
Period size: 54 Copynumber: 5.8 Consensus size: 54
4727817 TATAATTATA
* * ** * *
4727827 TTGGAAGATGTGCATACTTACATTGGTATAAGTGTATGTGCTAAGTGCTACACTTT
1 TTGGGAGATGTACATACTTACACCGGTGTAA--GTATGTGTTAAGTGCTACACTTT
** * * * * *
4727883 TTGATAGATGTACATACTTACATCAGTGTAACTATGTGTTAAATGTTACAC-TT
1 TTGGGAGATGTACATACTTACACCGGTGTAAGTATGTGTTAAGTGCTACACTTT
* * * *
4727936 TTAGTAGATGTACATACTTACACCGATGTAAGTATGTGTT--GTGTTACACTTT
1 TTGGGAGATGTACATACTTACACCGGTGTAAGTATGTGTTAAGTGCTACACTTT
* * *
4727988 TTGGGAGATGTACATGCTTACACTGGTGTAAGTATGTATTAAGTGCTACA-TATT
1 TTGGGAGATGTACATACTTACACCGGTGTAAGTATGTGTTAAGTGCTACACT-TT
* * * *
4728042 TTGGGAGATGTATATATTTACACCGGCGTAAGTATGTGTTAAATGCTACACTTT
1 TTGGGAGATGTACATACTTACACCGGTGTAAGTATGTGTTAAGTGCTACACTTT
* * * *
4728096 TT--TA-TTTTA-TTCACTTACACCGGTGTAAGTATGTGTTTAAGTG
1 TTGGGAGATGTACAT-ACTTACACCGGTGTAAGTATGTG-TTAAGTG
4728139 TTGTACTTTT
Statistics
Matches: 211, Mismatches: 38, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
50 1 0.00
51 32 0.15
52 43 0.20
53 37 0.18
54 72 0.34
55 1 0.00
56 25 0.12
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (54 bp):
TTGGGAGATGTACATACTTACACCGGTGTAAGTATGTGTTAAGTGCTACACTTT
Found at i:4729053 original size:2 final size:2
Alignment explanation
Indices: 4729046--4729118 Score: 128
Period size: 2 Copynumber: 36.5 Consensus size: 2
4729036 ATTTAAACAA
4729046 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
4729088 AT AT AT AT AT AC AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4729119 AGACTAAAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4729058 original size:129 final size:127
Alignment explanation
Indices: 4728804--4729066 Score: 309
Period size: 129 Copynumber: 2.0 Consensus size: 127
4728794 TATTAATATA
*
4728804 TATATAAATAAGATATTTATTTATTTATAAATATCAGAAAAGGGCTTCTAGGTGCTTTAAGACAA
1 TATATAAATAAGATATTTATTTATTTATAAATATCAGAAAAGGACTTCTAGGTGCTTTAAGACAA
* ***
4728869 CTCTTTTCTTAATATAAAATGAATAAATAAATATTAAAACATTTATTTAAAAATAGATATAATT
66 CCCTTTTCTTAATATAAAA-GAATAAATAAATATT-AAACATTTAAACAAAAATAGATATAATT
*
4728933 TATA-AAAGTAAGATATTTATTTATTTA-AGAATATCAGAAAATGACTTCTAGGTGCTTTAAGAC
1 TATATAAA-TAAGATATTTATTTATTTATA-AATATCAGAAAAGGACTTCTAGGTGCTTTAAGAC
* * * ** * *
4728996 AGCCCATTTTCTTTGATATTAAA-AATAAATAAATATT-ATTATTTAAACAAATATATATATATA
64 AACCC-TTTTC-TTAATATAAAAGAATAAATAAATATTAAACATTTAAACAAAAATAGATATA-A
*
4729059 TA
126 TT
4729061 TATATA
1 TATATA
4729067 TATATATATA
Statistics
Matches: 114, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
127 17 0.15
128 10 0.09
129 73 0.64
130 5 0.04
131 9 0.08
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.39
Consensus pattern (127 bp):
TATATAAATAAGATATTTATTTATTTATAAATATCAGAAAAGGACTTCTAGGTGCTTTAAGACAA
CCCTTTTCTTAATATAAAAGAATAAATAAATATTAAACATTTAAACAAAAATAGATATAATT
Found at i:4729149 original size:23 final size:22
Alignment explanation
Indices: 4729123--4729211 Score: 108
Period size: 23 Copynumber: 3.9 Consensus size: 22
4729113 TTTATAAGAC
4729123 TAAAATAATAATAAAATAATAAT
1 TAAAATAATAATAAAATAAT-AT
*
4729146 TAAAGTAATAATTAAAAT-ATAT
1 TAAAATAATAA-TAAAATAATAT
4729168 TAAAAGTAATAATAAAATAATAT
1 TAAAA-TAATAATAAAATAATAT
*
4729191 TACAAATAAATAATGAAATAA
1 TA-AAAT-AATAATAAAATAA
4729212 AATAAATAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
22 12 0.21
23 25 0.43
24 21 0.36
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (22 bp):
TAAAATAATAATAAAATAATAT
Found at i:4729197 original size:12 final size:11
Alignment explanation
Indices: 4729123--4729199 Score: 84
Period size: 12 Copynumber: 6.7 Consensus size: 11
4729113 TTTATAAGAC
*
4729123 TAAAATAATAA
1 TAAAATAATAT
4729134 TAAAATAATAAT
1 TAAAATAAT-AT
*
4729146 TAAAGTAATAAT
1 TAAAATAAT-AT
4729158 TAAAAT-ATAT
1 TAAAATAATAT
*
4729168 TAAAAGTAATAA
1 TAAAA-TAATAT
4729180 TAAAATAATAT
1 TAAAATAATAT
4729191 TACAAATAA
1 TA-AAATAA
4729200 ATAATGAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
10 7 0.12
11 19 0.33
12 31 0.54
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (11 bp):
TAAAATAATAT
Found at i:4730693 original size:39 final size:39
Alignment explanation
Indices: 4730632--4730708 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
4730622 ACCTGGCAGT
*
4730632 GCTGGAAGCTGCTGCAACTGATGCGTGGAGGGGCTGCTC
1 GCTGGAAGCTGCTGCAAATGATGCGTGGAGGGGCTGCTC
* *
4730671 GCTGGAAGCTGCTGGAAATGATGTGTGGAGGGGCTGCT
1 GCTGGAAGCTGCTGCAAATGATGCGTGGAGGGGCTGCT
4730709 GGATGGAGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.17, C:0.18, G:0.43, T:0.22
Consensus pattern (39 bp):
GCTGGAAGCTGCTGCAAATGATGCGTGGAGGGGCTGCTC
Found at i:4731074 original size:113 final size:113
Alignment explanation
Indices: 4730949--4731170 Score: 381
Period size: 113 Copynumber: 2.0 Consensus size: 113
4730939 GATGAAATCT
* *
4730949 AGCAAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTTTTCCTTCTTCAGATGAGTTCTTCT
1 AGCAAAAAGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
*
4731014 CATTATGAACTTTCTCTGGAAATGCTGATCCATCAAGTGATGGATTTG
66 CATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTG
* *
4731062 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 AGCAAAAAGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* *
4731127 CATTATGAACTTTCTCTGGAAAAGTTGATCCATCGAGTGATGGA
66 CATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGA
4731171 AATTTATGTT
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
113 102 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.37
Consensus pattern (113 bp):
AGCAAAAAGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
CATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTG
Found at i:4731211 original size:37 final size:36
Alignment explanation
Indices: 4731170--4731363 Score: 165
Period size: 37 Copynumber: 5.3 Consensus size: 36
4731160 CGAGTGATGG
*
4731170 AAATTTATGTTTCGAGTGAAACTGTCTCGAGCGAGAC
1 AAATTT-TGTTTCGAGTGAAACTGTCTCGAGTGAGAC
** ** * * *
4731207 AAATTTTGTTTTAAG-GAAAACAATTTCAAGTGAGAT
1 AAATTTTGTTTCGAGTG-AAACTGTCTCGAGTGAGAC
* * *
4731243 AAATTGCTGTTTCGAATGAAACTGTCTCGAGCGAGAC
1 AAATT-TTGTTTCGAGTGAAACTGTCTCGAGTGAGAC
** ** ** * *
4731280 AAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGAT
1 AAATTTTGTTTCGAGTGAAACTGTCTCGAGTGAGAC
*
4731316 AAATTGCTGTTTCGAGTGAAACTGTCTCGAGTGAGAC
1 AAATT-TTGTTTCGAGTGAAACTGTCTCGAGTGAGAC
4731353 AAATTTTGTTT
1 AAATTTTGTTT
4731364 TAAGAAAAAC
Statistics
Matches: 114, Mismatches: 39, Indels: 9
0.70 0.24 0.06
Matches are distributed among these distances:
35 1 0.01
36 55 0.48
37 57 0.50
38 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (36 bp):
AAATTTTGTTTCGAGTGAAACTGTCTCGAGTGAGAC
Found at i:4731247 original size:36 final size:37
Alignment explanation
Indices: 4731202--4731410 Score: 176
Period size: 36 Copynumber: 5.7 Consensus size: 37
4731192 TGTCTCGAGC
*
4731202 GAGACAAATT-TTGTTTTAAGGAAAACAATTTCAAGT
1 GAGACAAATTGTTGTTTTAAGGAAAACAATCTCAAGT
* * * * ** * *
4731238 GAGATAAATTGCTGTTTCGAATG-AAACTGTCTCGAGC
1 GAGACAAATTGTTGTTT-TAAGGAAAACAATCTCAAGT
*
4731275 GAGACAAATT-TTGTTTTAAGAAAAACAATCTCAAGT
1 GAGACAAATTGTTGTTTTAAGGAAAACAATCTCAAGT
* * ** ** *
4731311 GAGATAAATTGCTGTTTCGAGTG-AAACTGTCTCGAGT
1 GAGACAAATTGTTGTTTTAAG-GAAAACAATCTCAAGT
*
4731348 GAGACAAATT-TTGTTTTAAGAAAAACAATCTCAAGT
1 GAGACAAATTGTTGTTTTAAGGAAAACAATCTCAAGT
* *
4731384 GAGATAAATTGTTGTTTCGAAGGAAAA
1 GAGACAAATTGTTGTTT-TAAGGAAAA
4731411 TGTTTAATAA
Statistics
Matches: 128, Mismatches: 37, Indels: 14
0.72 0.21 0.08
Matches are distributed among these distances:
35 2 0.02
36 60 0.47
37 56 0.44
38 10 0.08
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (37 bp):
GAGACAAATTGTTGTTTTAAGGAAAACAATCTCAAGT
Found at i:4731281 original size:73 final size:73
Alignment explanation
Indices: 4731177--4731409 Score: 403
Period size: 73 Copynumber: 3.2 Consensus size: 73
4731167 TGGAAATTTA
* * *
4731177 TGTTTCGAGTGAAACTGTCTCGAGCGAGACAAATTTTGTTTTAAGGAAAACAATTTCAAGTGAGA
1 TGTTTCGAATGAAACTGTCTCGAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGA
4731242 TAAATTGC
66 TAAATTGC
4731250 TGTTTCGAATGAAACTGTCTCGAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGA
1 TGTTTCGAATGAAACTGTCTCGAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGA
4731315 TAAATTGC
66 TAAATTGC
* *
4731323 TGTTTCGAGTGAAACTGTCTCGAGTGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGA
1 TGTTTCGAATGAAACTGTCTCGAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGA
*
4731388 TAAATTGT
66 TAAATTGC
*
4731396 TGTTTCGAAGGAAA
1 TGTTTCGAATGAAA
4731410 ATGTTTAATA
Statistics
Matches: 152, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 152 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (73 bp):
TGTTTCGAATGAAACTGTCTCGAGCGAGACAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGA
TAAATTGC
Found at i:4731719 original size:166 final size:164
Alignment explanation
Indices: 4731408--4731728 Score: 497
Period size: 166 Copynumber: 1.9 Consensus size: 164
4731398 TTTCGAAGGA
4731408 AAATGTTTAATAAGTAAAAACTAAGAAAAATAGTTTTCTTACTTTTCAACAATTTCATTTTCAGA
1 AAATGTTTAATAAGTAAAAACTAAGAAAAATAGTTTTCTTACTTTTCAACAATTTCATTTTCAGA
** * *
4731473 AAAGATTGAATGAGAAACTTTGGAAATCATTTTCTCATTATGTTTTAAGATAACCTGTTGATTGG
66 AAAGATAAAATGAGAAACTATGGAAATCATTTTCTCATTATGTTTTAAGATAACATGTTGATTGG
* *
4731538 GTAACATGTCCCAATCTCCAGATAAGGTTGTTGG
131 GTAACATGCCCCAATCTCAAGATAAGGTTGTTGG
4731572 AAATAGTTTAATAAGTAAAAAAACTAAG-AAAATCA-TTTTCTTACTTTTCAACAATTTCATTTT
1 AAAT-GTTTAATAAGT--AAAAACTAAGAAAAAT-AGTTTTCTTACTTTTCAACAATTTCATTTT
*
4731635 -AGAAAAGATAAAATGAGAAACTATGGAAATCGTTTTCTCATTATGTTTTTGAA-ATAACATGTT
62 CAGAAAAGATAAAATGAGAAACTATGGAAATCATTTTCTCATTATG-TTTT-AAGATAACATGTT
4731698 GATTGGGTAACATGCCCCAATCTCAAGATAA
125 GATTGGGTAACATGCCCCAATCTCAAGATAA
4731729 TGCTCATTCT
Statistics
Matches: 144, Mismatches: 7, Indels: 10
0.89 0.04 0.06
Matches are distributed among these distances:
164 4 0.03
165 52 0.36
166 75 0.52
167 13 0.09
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.36
Consensus pattern (164 bp):
AAATGTTTAATAAGTAAAAACTAAGAAAAATAGTTTTCTTACTTTTCAACAATTTCATTTTCAGA
AAAGATAAAATGAGAAACTATGGAAATCATTTTCTCATTATGTTTTAAGATAACATGTTGATTGG
GTAACATGCCCCAATCTCAAGATAAGGTTGTTGG
Found at i:4732266 original size:21 final size:21
Alignment explanation
Indices: 4732231--4732308 Score: 84
Period size: 22 Copynumber: 3.6 Consensus size: 21
4732221 CATAAAGTTT
*
4732231 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTT-AAAAGAAAATCTA
* *
4732253 TCATCTTTAAAAGAAAATTTG
1 TCATCTTTAAAAGAAAATCTA
* **
4732274 TCATCTCTGAAGTGAAAATCTA
1 TCATCT-TTAAAAGAAAATCTA
4732296 TCATCTTTAAAAG
1 TCATCTTTAAAAG
4732309 TGTAGATGTA
Statistics
Matches: 44, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
21 20 0.45
22 24 0.55
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.35
Consensus pattern (21 bp):
TCATCTTTAAAAGAAAATCTA
Found at i:4739408 original size:14 final size:14
Alignment explanation
Indices: 4739374--4739426 Score: 70
Period size: 14 Copynumber: 3.7 Consensus size: 14
4739364 TTGTGCAATA
*
4739374 CAAATGCAAAAATG
1 CAAATGTAAAAATG
*
4739388 CCAAATGTAAATATG
1 -CAAATGTAAAAATG
4739403 CAAATGTAAAAATG
1 CAAATGTAAAAATG
*
4739417 TAAATGTAAA
1 CAAATGTAAA
4739427 TTATTTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 22 0.65
15 12 0.35
ACGTcount: A:0.55, C:0.09, G:0.13, T:0.23
Consensus pattern (14 bp):
CAAATGTAAAAATG
Found at i:4741026 original size:13 final size:13
Alignment explanation
Indices: 4741008--4741065 Score: 59
Period size: 13 Copynumber: 4.5 Consensus size: 13
4740998 TTAATTCTTG
4741008 AATAAAATAAATA
1 AATAAAATAAATA
4741021 AATAAAAT-AATA
1 AATAAAATAAATA
* *
4741033 AAAAATAATATATA
1 AATAA-AATAAATA
4741047 AA-AATAATAAA-A
1 AATAA-AATAAATA
4741059 AATAAAA
1 AATAAAA
4741066 AATTTGAAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
12 13 0.33
13 21 0.54
14 5 0.13
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (13 bp):
AATAAAATAAATA
Found at i:4741039 original size:10 final size:10
Alignment explanation
Indices: 4741024--4741067 Score: 54
Period size: 10 Copynumber: 4.2 Consensus size: 10
4741014 ATAAATAAAT
4741024 AAAATAATAA
1 AAAATAATAA
4741034 AAAATAATATATA
1 AAAAT-A-ATA-A
4741047 AAAATAATAA
1 AAAATAATAA
4741057 AAAATAA-AA
1 AAAATAATAA
4741066 AA
1 AA
4741068 TTTGAAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
9 4 0.13
10 13 0.42
11 4 0.13
12 4 0.13
13 6 0.19
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAATAATAA
Found at i:4741040 original size:23 final size:24
Alignment explanation
Indices: 4741011--4741068 Score: 86
Period size: 23 Copynumber: 2.5 Consensus size: 24
4741001 ATTCTTGAAT
4741011 AAAATAAATAAAT-AAAATAATAA
1 AAAATAAATAAATAAAAATAATAA
*
4741034 AAAAT-AATATATAAAAATAATAA
1 AAAATAAATAAATAAAAATAATAA
4741057 AAAATAAA-AAAT
1 AAAATAAATAAAT
4741069 TTGAAAGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 6 0.19
23 23 0.74
24 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (24 bp):
AAAATAAATAAATAAAAATAATAA
Found at i:4741826 original size:2 final size:2
Alignment explanation
Indices: 4741819--4741855 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
4741809 ATTTAAACAA
* *
4741819 AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4741856 AGACTAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4741831 original size:129 final size:127
Alignment explanation
Indices: 4741577--4741829 Score: 307
Period size: 129 Copynumber: 2.0 Consensus size: 127
4741567 TATTAATATA
*
4741577 TATATAAATAAGATATTTATTTATTTATAAATATCAGAAAAGGGCTTCTAGGTGCTTTAAGACAA
1 TATATAAATAAGATATTTATTTATTTATAAATATCAGAAAAGGACTTCTAGGTGCTTTAAGACAA
* ***
4741642 CTCTTTTCTTAATATAAAATGAATAAATAAATATTAAAACATTTATTTAAAAATAGATATAATT
66 CCCTTTTCTTAATATAAAA-GAATAAATAAATATT-AAACATTTAAACAAAAATAGATATAATT
*
4741706 TATA-AAAGTAAGATATTTATTTATTTA-AGAATATCAGAAAATGACTTCTAGGTGCTTTAAGAC
1 TATATAAA-TAAGATATTTATTTATTTATA-AATATCAGAAAAGGACTTCTAGGTGCTTTAAGAC
* * * ** * *
4741769 AGCCCATTTTCTTTGATATTAAA-AATAAATAAATATT-ATTATTTAAACAAATATATATATA
64 AACCC-TTTTC-TTAATATAAAAGAATAAATAAATATTAAACATTTAAACAAAAATAGATATA
4741830 TATATACATA
Statistics
Matches: 107, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
127 17 0.16
128 4 0.04
129 72 0.67
130 5 0.05
131 9 0.08
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.39
Consensus pattern (127 bp):
TATATAAATAAGATATTTATTTATTTATAAATATCAGAAAAGGACTTCTAGGTGCTTTAAGACAA
CCCTTTTCTTAATATAAAAGAATAAATAAATATTAAACATTTAAACAAAAATAGATATAATT
Found at i:4741851 original size:129 final size:124
Alignment explanation
Indices: 4741570--4741854 Score: 301
Period size: 129 Copynumber: 2.2 Consensus size: 124
4741560 GAAAATCTAT
*
4741570 TAATATATATATAAATAAGATATTTATTTATTTATAAATATCAGAAAAGGGCTTCTAGGTGCTTT
1 TAATATATA-AT-AATAAGATATTTATTTATTTATAAATATCAGAAAAGGACTTCTAGGTGCTTT
*
4741635 AAGACAACTCTTTTCTTAATATAAAATGAATAAATAAATATTAAAACATTTATTTAAAAATAGAT
64 AAGACAACCCTTTTCTTAATATAAAA-GAATAAATAAATATT---A-ATTTATTTAAAAATAGAT
4741700 A
124 A
* *
4741701 TAATTTATAA-AAGTAAGATATTTATTTATTTA-AGAATATCAGAAAATGACTTCTAGGTGCTTT
1 TAATATATAATAA-TAAGATATTTATTTATTTATA-AATATCAGAAAAGGACTTCTAGGTGCTTT
* * * *
4741764 AAGACAGCCCATTTTCTTTGATATTAAA-AATAAATAAATATT-A-TTATTTAAACAAATATATA
64 AAGACAACCC-TTTTC-TTAATATAAAAGAATAAATAAATATTAATTTATTT-AA-AAATAGATA
*
4741826 TATATATATACATATATATATATATTTAT
1 TA-ATATATA-ATA-ATA-AGATATTTAT
4741855 AAGACTAAAA
Statistics
Matches: 133, Mismatches: 10, Indels: 24
0.80 0.06 0.14
Matches are distributed among these distances:
123 6 0.05
124 3 0.02
125 10 0.08
126 6 0.05
127 1 0.01
128 6 0.05
129 78 0.59
130 6 0.05
131 17 0.13
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (124 bp):
TAATATATAATAATAAGATATTTATTTATTTATAAATATCAGAAAAGGACTTCTAGGTGCTTTAA
GACAACCCTTTTCTTAATATAAAAGAATAAATAAATATTAATTTATTTAAAAATAGATA
Found at i:4741886 original size:23 final size:22
Alignment explanation
Indices: 4741860--4741948 Score: 108
Period size: 23 Copynumber: 3.9 Consensus size: 22
4741850 TTTATAAGAC
4741860 TAAAATAATAATAAAATAATAAT
1 TAAAATAATAATAAAATAAT-AT
*
4741883 TAAAGTAATAATTAAAAT-ATAT
1 TAAAATAATAA-TAAAATAATAT
4741905 TAAAAGTAATAATAAAATAATAT
1 TAAAA-TAATAATAAAATAATAT
*
4741928 TACAAATAAATAATGAAATAA
1 TA-AAAT-AATAATAAAATAA
4741949 AATAAATAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
22 12 0.21
23 25 0.43
24 21 0.36
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (22 bp):
TAAAATAATAATAAAATAATAT
Found at i:4741934 original size:12 final size:11
Alignment explanation
Indices: 4741860--4741936 Score: 84
Period size: 12 Copynumber: 6.7 Consensus size: 11
4741850 TTTATAAGAC
*
4741860 TAAAATAATAA
1 TAAAATAATAT
4741871 TAAAATAATAAT
1 TAAAATAAT-AT
*
4741883 TAAAGTAATAAT
1 TAAAATAAT-AT
4741895 TAAAAT-ATAT
1 TAAAATAATAT
*
4741905 TAAAAGTAATAA
1 TAAAA-TAATAT
4741917 TAAAATAATAT
1 TAAAATAATAT
4741928 TACAAATAA
1 TA-AAATAA
4741937 ATAATGAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
10 7 0.12
11 19 0.33
12 31 0.54
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (11 bp):
TAAAATAATAT
Found at i:4743428 original size:39 final size:39
Alignment explanation
Indices: 4743367--4743443 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
4743357 ACCTGGCAGT
* *
4743367 GCTGGAAGCTGCTGCAACTGATGTGTGGAGGGGCTGCTC
1 GCTGGAAGCTGCTGCAAATGATGTGTGCAGGGGCTGCTC
*
4743406 GCTGGAAGCTGCTGGAAATGATGTGTGCAGGGGCTGCT
1 GCTGGAAGCTGCTGCAAATGATGTGTGCAGGGGCTGCT
4743444 GGATGGAGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.17, C:0.18, G:0.42, T:0.23
Consensus pattern (39 bp):
GCTGGAAGCTGCTGCAAATGATGTGTGCAGGGGCTGCTC
Found at i:4743581 original size:44 final size:44
Alignment explanation
Indices: 4743518--4743602 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
4743508 ATCCATTACA
* * *
4743518 TCAATACTTTAATGGAATTTTAACTACAAAAGTTTATATGAATT
1 TCAATACTTAAATGGAATTTCAACTACAAAAATTTATATGAATT
*
4743562 TCAATACTTAAATTGAATTTCAACTACAAAAATTTATATGA
1 TCAATACTTAAATGGAATTTCAACTACAAAAATTTATATGA
4743603 GTTTGTCTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.39
Consensus pattern (44 bp):
TCAATACTTAAATGGAATTTCAACTACAAAAATTTATATGAATT
Found at i:4746289 original size:59 final size:59
Alignment explanation
Indices: 4746216--4746341 Score: 198
Period size: 59 Copynumber: 2.1 Consensus size: 59
4746206 GAAGGCTGCG
* * * *
4746216 TATTCAGGATTGCACTAAAGTATAACTAGTGCATATGGTGGCCATTACCTTATGTGTCA
1 TATTCGGGACTGCACTAAAGTATAACTAGTGCAGATGGTGGCCATGACCTTATGTGTCA
*
4746275 TATTCGGGACTGCACTAAAGTATAACTAGTGCAGATGGTGGGCATGACCTTATGTGTCA
1 TATTCGGGACTGCACTAAAGTATAACTAGTGCAGATGGTGGCCATGACCTTATGTGTCA
*
4746334 TACTCGGG
1 TATTCGGG
4746342 TTAGCACTAC
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (59 bp):
TATTCGGGACTGCACTAAAGTATAACTAGTGCAGATGGTGGCCATGACCTTATGTGTCA
Found at i:4757542 original size:10 final size:10
Alignment explanation
Indices: 4757527--4757563 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
4757517 ACCACCACAA
*
4757527 ATGCAACTAC
1 ATGCAATTAC
4757537 ATGCAATTAC
1 ATGCAATTAC
4757547 ATGCAATTAC
1 ATGCAATTAC
4757557 ATG-AATT
1 ATGCAATT
4757564 TAAAATGACC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
9 4 0.15
10 22 0.85
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.30
Consensus pattern (10 bp):
ATGCAATTAC
Found at i:4765034 original size:182 final size:182
Alignment explanation
Indices: 4764832--4765491 Score: 996
Period size: 182 Copynumber: 3.6 Consensus size: 182
4764822 GATACAAATA
* * * * *
4764832 AAAAATGTATTGATCCATAACAATATAACAAGTAAAAATATGACCAAATCGGTCTCGAAATTACC
1 AAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAATCGGTCTCAAAATGACA
* *
4764897 AAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGCATCGACACTTT
66 AAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
* *
4764962 TAGAATTTAAAAGAGAAACAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
131 TAGAATTTAAAAGACAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
* *
4765014 AAAAATGTATCGATCCATAACAATATAACATGTAAAAATATGATAAAATCGGTCTCAAAATGACA
1 AAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAATCGGTCTCAAAATGACA
** * * * * *
4765079 AAACTAGTAAAGAGGTACTGGATATGTTGAAAGTGTCAATACTTTATTATAAGTATCGACACTTT
66 AAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
* * * *
4765144 TTGATTTTAAAAGACAAGCAGTAATAGCACCTATAAAGTGTTGATACTTTAT
131 TAGAATTTAAAAGACAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
* *
4765196 AAAAATGTATCGATCCATAACAACATAACAAGTAAAAATATGATAAAATCGGTCTCAAAATGACA
1 AAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAATCGGTCTCAAAATGACA
* *
4765261 AAACCGGTAAAGCGCTACCGGATATGTTGAAAGTTTCGATACTTTATTATAAGTATCGACACTTT
66 AAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
* *
4765326 TGGAATTTAAAAGACAAGCAGTAATAGAGCCTATAAAGTGTCGATACTTTAT
131 TAGAATTTAAAAGACAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
* * * * * * *
4765378 AAAAATGTATTGATCTATAACAATATAATAGGTAAAAATATGACGAAATCGGTCTCGAAATAACA
1 AAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAATCGGTCTCAAAATGACA
*
4765443 AAACCGGTAAAGTGCTACCGGATATGTTGAAAGTGTCGATACTTTAATA
66 AAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATACTTTAATA
4765492 AGTACGCGTA
Statistics
Matches: 430, Mismatches: 48, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
182 430 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (182 bp):
AAAAATGTATCGATCCATAACAATATAACAAGTAAAAATATGACAAAATCGGTCTCAAAATGACA
AAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCGACACTTT
TAGAATTTAAAAGACAAGCAGTAATAGCGCCTATAAAGTGTCGATACTTTAT
Found at i:4765573 original size:21 final size:21
Alignment explanation
Indices: 4765547--4765601 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
4765537 TATCCTATCG
4765547 AAAGTATCGACACCTGACATA
1 AAAGTATCGACACCTGACATA
4765568 AAAGTATCGACACCTGACATA
1 AAAGTATCGACACCTGACATA
*
4765589 AAAGTATCAACAC
1 AAAGTATCGACAC
4765602 TTTTGTAGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.45, C:0.24, G:0.13, T:0.18
Consensus pattern (21 bp):
AAAGTATCGACACCTGACATA
Found at i:4767528 original size:22 final size:23
Alignment explanation
Indices: 4767478--4767532 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
4767468 ACGTTTTTTT
*
4767478 TTTTA-TATATAAAATGATAGTA
1 TTTTATTATATAAAATGATAGAA
*
4767500 TAGTTATTATATAAAATGATA-AA
1 T-TTTATTATATAAAATGATAGAA
4767523 TTTTATTATA
1 TTTTATTATA
4767533 AATGCAGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
22 9 0.32
23 5 0.18
24 14 0.50
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (23 bp):
TTTTATTATATAAAATGATAGAA
Found at i:4769796 original size:19 final size:19
Alignment explanation
Indices: 4769772--4769820 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
4769762 AATGTAGGGT
4769772 TAATTTTGTATAAGAATTA
1 TAATTTTGTATAAGAATTA
* *
4769791 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGAATTA
4769810 TAATTTTGTAT
1 TAATTTTGTAT
4769821 GTGGATGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.53
Consensus pattern (19 bp):
TAATTTTGTATAAGAATTA
Found at i:4771122 original size:199 final size:198
Alignment explanation
Indices: 4770690--4771432 Score: 989
Period size: 199 Copynumber: 3.7 Consensus size: 198
4770680 TAGGTAAATA
***
4770690 AAAGTGTCGATACATTTATTAAAAGTATTAATCCCAAAAACATCGAAACA-ACTAATTATAATGT
1 AAAGTGTCGATACATTTA-TAAAAGTAGCGATCCCAAAAACATCGAAACAGAC-AATTATAATGT
* *
4770754 AATAGGTAAATTTCCAATGTAACCA-GTAGAAATATACCAGTTAATTAGAAAATAGGTCTACATA
64 AATAGGTAAATTTTCAATGTAA-CATGTAGAAATATACCGGTTAATTAGAAAATAGGTCTACATA
* **
4770818 ATGTATCGACACTTTTTAAATTGTGTCGATACTTTTTGTATAGAATGAATGCCCAACCGAGGTAT
128 ATGTATCGACACTTTTTAAATTGTGTCGATACTTTTTGTCTAGAATGAATGCCCAACCGAGGTGC
4770883 ACGCAT
193 ACGCAT
* *
4770889 AAAGTGTCGATACATTTATTAAAAGTAGCGATCCCAAAAATATCGATACAGACAATTATAATGTA
1 AAAGTGTCGATACATTTA-TAAAAGTAGCGATCCCAAAAACATCGAAACAGACAATTATAATGTA
* * * *
4770954 ATAGGTAATTTTTCAATGTAACATGTATAAATATACCGGTT-TTATAAAAGAATAGGTCTACATA
65 ATAGGTAAATTTTCAATGTAACATGTAGAAATATACCGGTTAAT-TAGAA-AATAGGTCTACATA
** * *
4771018 ATGTATCGACACTTGTGGAATTTGTGTCGATACTTTTTGTCCAGAATGAATGCCCAA-CGAGGTG
128 ATGTATCGACACTT-TTTAAATTGTGTCGATACTTTTTGTCTAGAATGAATGCCCAACCGAGGTG
4771082 CACGCAT
192 CACGCAT
* * * * * *
4771089 AAAGTGTCGATACATTTA-AAATTGTATCGATCCCGAAAACATAGAAACCGATAATTATAATGTA
1 AAAGTGTCGATACATTTATAAA-AGTAGCGATCCCAAAAACATCGAAACAGACAATTATAATGTA
* * * * * **
4771153 ATAGGTAAATTTGT-AATATTA-TTGATATAAATATACCGGTTTAGTTAGAAAATAGGTAAACAT
65 ATAGGTAAATTT-TCAATGTAACATG-TAGAAATATACCGG-TTAATTAGAAAATAGGTCTACAT
*
4771216 AATGTATCGACACTTTTTAAATTGTGTCTATACTTTTTGTCTAGAATGAATGCCCAACCGAGGTG
127 AATGTATCGACACTTTTTAAATTGTGTCGATACTTTTTGTCTAGAATGAATGCCCAACCGAGGTG
4771281 CACGCAT
192 CACGCAT
* *
4771288 AAAGTGTCGATACATTTATTAAAAGTAGCGATCCCAAAAACATCGAAACATATAATTATAATGTA
1 AAAGTGTCGATACATTTA-TAAAAGTAGCGATCCCAAAAACATCGAAACAGACAATTATAATGTA
*
4771353 ATATGTAAATTTTCAATGTAAC-TGGTAGAAATATACCGGTTAATTAGAAAATAGGTCTACATAA
65 ATAGGTAAATTTTCAATGTAACAT-GTAGAAATATACCGGTTAATTAGAAAATAGGTCTACATAA
*
4771417 TGTATCGATACTTTTT
129 TGTATCGACACTTTTT
4771433 GTCCAGAATG
Statistics
Matches: 475, Mismatches: 53, Indels: 32
0.85 0.09 0.06
Matches are distributed among these distances:
198 45 0.09
199 255 0.54
200 133 0.28
201 42 0.09
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (198 bp):
AAAGTGTCGATACATTTATAAAAGTAGCGATCCCAAAAACATCGAAACAGACAATTATAATGTAA
TAGGTAAATTTTCAATGTAACATGTAGAAATATACCGGTTAATTAGAAAATAGGTCTACATAATG
TATCGACACTTTTTAAATTGTGTCGATACTTTTTGTCTAGAATGAATGCCCAACCGAGGTGCACG
CAT
Found at i:4771549 original size:177 final size:179
Alignment explanation
Indices: 4771245--4771609 Score: 495
Period size: 177 Copynumber: 2.1 Consensus size: 179
4771235 AATTGTGTCT
* * *
4771245 ATACTTTTTGTCTAGAATGAATGCCCAACCGAGGTGCACGCATAAAGTGTCGATACATTTATTAA
1 ATACTTTTTGTCCAGAATGAATGACCAAACGAGGTGCACGCATAAAGTGTCGATACATTTATTAA
* * * * **
4771310 AAGTAGCGATCCCAAAAACATCGAAACATATAATTATAATGTAATATGTAAATTTTCAATGTAAC
66 AAGTAGCGATCCCAAAAACATCAAAACAGATAATTACAATGTAATAGGTAAATTAACAATGTAAC
** *
4771375 TGGTAGAAA-TATACCGGTTAATTAGAAAATAGGTCTACATAATGTATCG
131 CCGTAGAAATTA-ACCGGTTAATGAGAAAATAGGTCTACATAATGTATCG
* *
4771424 ATACTTTTTGTCCAGAATGAAT-ACCAAAGGGGGTGCACGCATAAAGTGTCGATACA-TT-TTAA
1 ATACTTTTTGTCCAGAATGAATGACCAAACGAGGTGCACGCATAAAGTGTCGATACATTTATTAA
* *
4771486 AATGTATCGATCCCAAAAACATCAAAACCGATAATTACAATGTAATAGGTAAATTAACAATGTAA
66 AA-GTAGCGATCCCAAAAACATCAAAACAGATAATTACAATGTAATAGGTAAATTAACAATGTAA
* * * *
4771551 CCCGTATAAATTAACTGGTTTATGAGAAAATAGGTCTATATAATGTATCG
130 CCCGTAGAAATTAACCGGTTAATGAGAAAATAGGTCTACATAATGTATCG
*
4771601 ACACTTTTT
1 ATACTTTTT
4771610 AAATATGTAT
Statistics
Matches: 163, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
176 6 0.04
177 104 0.64
178 32 0.20
179 21 0.13
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (179 bp):
ATACTTTTTGTCCAGAATGAATGACCAAACGAGGTGCACGCATAAAGTGTCGATACATTTATTAA
AAGTAGCGATCCCAAAAACATCAAAACAGATAATTACAATGTAATAGGTAAATTAACAATGTAAC
CCGTAGAAATTAACCGGTTAATGAGAAAATAGGTCTACATAATGTATCG
Found at i:4773205 original size:19 final size:19
Alignment explanation
Indices: 4773181--4773228 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
4773171 ATGTAGGGGA
4773181 AATTTTGTATACGATTCAT
1 AATTTTGTATACGATTCAT
*
4773200 AATTTTGTATACGATTTAT
1 AATTTTGTATACGATTCAT
4773219 AATTTTGTAT
1 AATTTTGTAT
4773229 GTGAATGTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.52
Consensus pattern (19 bp):
AATTTTGTATACGATTCAT
Found at i:4774990 original size:24 final size:24
Alignment explanation
Indices: 4774955--4775032 Score: 138
Period size: 24 Copynumber: 3.2 Consensus size: 24
4774945 GCATAGATAG
*
4774955 TGCATCGATGCACCCGTCAAGGGA
1 TGCATCAATGCACCCGTCAAGGGA
*
4774979 TGTATCAATGCACCCGTCAAGGGA
1 TGCATCAATGCACCCGTCAAGGGA
4775003 TGCATCAATGCACCCGTCAAGGGA
1 TGCATCAATGCACCCGTCAAGGGA
4775027 TGCATC
1 TGCATC
4775033 GATACATGGT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.27, C:0.28, G:0.26, T:0.19
Consensus pattern (24 bp):
TGCATCAATGCACCCGTCAAGGGA
Done.