Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008620.1 Hibiscus syriacus cultivar Beakdansim tig00111582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13158977
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 33 of 64
Found at i:6621086 original size:43 final size:43
Alignment explanation
Indices: 6620991--6621086 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
6620981 CACATAATAG
* **
6620991 TGCATCGATGCATCATTGAATGTGCATCGATACACCATGAAGG
1 TGCATCGATGCATCATTGAATGTGCATCGATACACCAGGAACA
* * * **
6621034 TGCACCGATGCATGCCTTGAATGTGCATCGATGCA-CAGGGTCA
1 TGCATCGATGCAT-CATTGAATGTGCATCGATACACCAGGAACA
6621077 TGCATCGATG
1 TGCATCGATG
6621087 TATTCGTTGG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
43 24 0.56
44 19 0.44
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (43 bp):
TGCATCGATGCATCATTGAATGTGCATCGATACACCAGGAACA
Found at i:6622642 original size:21 final size:21
Alignment explanation
Indices: 6622600--6622643 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
6622590 ACCCCGGGAG
*
6622600 CTAGCTCTTCACGAGCTGCTC
1 CTAGCTCTTCACGAGCTCCTC
* *
6622621 CTAGCTCTTCTCGTGCTCCTC
1 CTAGCTCTTCACGAGCTCCTC
6622642 CT
1 CT
6622644 CCAGCACCGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.16, T:0.34
Consensus pattern (21 bp):
CTAGCTCTTCACGAGCTCCTC
Found at i:6623842 original size:17 final size:19
Alignment explanation
Indices: 6623814--6623862 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
6623804 TATTTTGAAA
6623814 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
6623832 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
6623851 CACCGATGCACT
1 CATCGATGCACT
6623863 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:6627881 original size:13 final size:13
Alignment explanation
Indices: 6627863--6627888 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6627853 TATTTCTTTA
6627863 TTATTTTATTTTT
1 TTATTTTATTTTT
6627876 TTATTTTATTTTT
1 TTATTTTATTTTT
6627889 ATGGATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTATTTTATTTTT
Found at i:6629350 original size:21 final size:21
Alignment explanation
Indices: 6629299--6629351 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
6629289 AGTAACACTG
*
6629299 TTACAAAGTAAGACAACTTTA
1 TTACAAAGTCAGACAACTTTA
6629320 TTACAAAGTCAGACAACTTTA
1 TTACAAAGTCAGACAACTTTA
6629341 TTACAAAGTCA
1 TTACAAAGTCA
6629352 TAGCTAACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.45, C:0.17, G:0.09, T:0.28
Consensus pattern (21 bp):
TTACAAAGTCAGACAACTTTA
Found at i:6630775 original size:54 final size:55
Alignment explanation
Indices: 6630624--6630783 Score: 241
Period size: 55 Copynumber: 2.9 Consensus size: 55
6630614 ATGGCACTAA
*
6630624 GTGTGCAAAAACTTAAGAAATTCATACTAAGTGTATGAATTATTGTATGGGCACTTT
1 GTGTGC-AAAAC-TAAGAAATTCATACTAAGTGTATGAATTTTTGTATGGGCACTTT
* *
6630681 GTGTTCAAAACTAAGAAATTCATACTAAGTGTATGCATTTTTGTATGGGCACTTT
1 GTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTTTGTATGGGCACTTT
* * *
6630736 GTGTGCGAAA-TAAGAAATTCATACCAAGTGTATGAATTTTCGTATGGG
1 GTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTTTGTATGGG
6630784 AAATATATGT
Statistics
Matches: 95, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
54 35 0.37
55 50 0.53
56 5 0.05
57 5 0.05
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.35
Consensus pattern (55 bp):
GTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTTTGTATGGGCACTTT
Found at i:6631072 original size:68 final size:68
Alignment explanation
Indices: 6630959--6631347 Score: 584
Period size: 68 Copynumber: 5.7 Consensus size: 68
6630949 AAAGATTAAT
* *
6630959 AGGCCTAACTGTGCATTTGATAGAACGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
6631024 TTG
66 TTG
* * * *
6631027 AGGTCTAACTGTCCATTTGACAGAAAGTTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTTCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
6631092 TTG
66 TTG
* * * * *
6631095 AGACCTAATTGTGCATTTGAC-GTAAAGGTGTCATTTATACCAGTTAAATGAAAGGCTAAATGCC
1 AGGCCTAACTGTGCATTTGACAG-AAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCC
6631159 TTTG
65 TTTG
*
6631163 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCA-TATAGATGAAAGGCTAAGTGTC
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGT-TAGATGAAAGGCTAAGTGCC
6631227 TTTG
65 TTTG
*
6631231 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCTGTTAGATGAAAGGCTAAGTGCCT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
6631296 TTG
66 TTG
* * * * *
6631299 AGGCCTAACTGTGCATTTGGCAAAAATGTGTCAATTATGCCAATTAGAT
1 AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGAT
6631348 AAACGATTAA
Statistics
Matches: 288, Mismatches: 29, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
67 2 0.01
68 284 0.99
69 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.32
Consensus pattern (68 bp):
AGGCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCT
TTG
Found at i:6631484 original size:81 final size:81
Alignment explanation
Indices: 6631300--6631943 Score: 867
Period size: 81 Copynumber: 7.9 Consensus size: 81
6631290 GTGCCTTTGA
* * * * * **
6631300 GGCCTAACTGTGCATTTGGCAAAAATGTGTCAATTATGCCAATTAGATAAACGATTAAAATGTCG
1 GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTT-AAATACCG
*
6631365 TTGAGTAAAATAATAAT
65 TTGAGTAAAAGAATAAT
* * * *
6631382 GACCTAACTGTGCATTTGGCAGAAAGGTTTCAATTATGCCAGTTAGATGAACGTTTAAATACAGT
1 GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
*
6631447 TTAGTAAAAGAATAAT
66 TGAGTAAAAGAATAAT
* * ** *
6631463 GGACTAAGTGTGCATTTGGCAGAAAAATGTCAATTATGCCAGTTAGGTGAACGGTTAAATACCGT
1 GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
6631528 TGAGTAAAAGAATAAT
66 TGAGTAAAAGAATAAT
* * * * * * *
6631544 GGGCTAATTGTGTATTTGG-AAACAATGTGTCAATTATGCCAGTTAGATGAATGATTAAATACCG
1 GGCCTAACTGTGCATTTGGCAGA-AAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCG
*
6631608 TTGAGTAAAAGAATAAA
65 TTGAGTAAAAGAATAAT
* * * ***
6631625 GGCCTAAATGTGCATTTGGCAGCAAGGTGTGAATTATGCCAGTTAGATGAACGGTTAAATAAAAT
1 GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
6631690 TGAGTAAAAGAATAAT
66 TGAGTAAAAGAATAAT
* * *
6631706 GGCCTAACTGTGCATTTGGCAGCAATGTGTCAATTATGCCAGTTAGATGAACGGTTACATACCGT
1 GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
6631771 TGAGTAAAAGAATAAT
66 TGAGTAAAAGAATAAT
* * * *
6631787 GGCCTAATTGTGCATTTGGCAGCAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAACACCGT
1 GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
6631852 TGAGTAAAAGAATAAT
66 TGAGTAAAAGAATAAT
* * * * *
6631868 GGTCTAACTGTGCATTTGGCAGAAAAGTGTGAATTATGCCAGTTAGATGAACGGTTAAACACTGT
1 GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
6631933 TGAGTAAAAGA
66 TGAGTAAAAGA
6631944 TGAACGGTTA
Statistics
Matches: 496, Mismatches: 64, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
80 2 0.00
81 444 0.90
82 50 0.10
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (81 bp):
GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
TGAGTAAAAGAATAAT
Found at i:6631954 original size:29 final size:29
Alignment explanation
Indices: 6631912--6631972 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
6631902 TATGCCAGTT
*
6631912 AGATGAACGGTTAAACACTGTTGAGTAAA
1 AGATGAACGGTTAAACACTATTGAGTAAA
6631941 AGATGAACGGTTAAACACTATTGAGTAAA
1 AGATGAACGGTTAAACACTATTGAGTAAA
6631970 AGA
1 AGA
6631973 ATAATGGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.44, C:0.10, G:0.23, T:0.23
Consensus pattern (29 bp):
AGATGAACGGTTAAACACTATTGAGTAAA
Found at i:6632024 original size:110 final size:110
Alignment explanation
Indices: 6631831--6632028 Score: 288
Period size: 110 Copynumber: 1.8 Consensus size: 110
6631821 TATGCCAGTT
* ** *
6631831 AGATGAACAGTTAAACACCGTTGAGTAAAAGAATAATGGTCTAACTGTGCATTTGGCAGAAAAGT
1 AGATGAACAGTTAAACACCATTGAGTAAAAGAATAATGGAATAACTGTGCATTTGACAGAAAAGT
* * *
6631896 GTGAATTATGCCAGTTAGATGAACGGTTAAACACTGTTGAGTAAA
66 GTCAAATATGCAAGTTAGATGAACGGTTAAACACTGTTGAGTAAA
* * ** *
6631941 AGATGAACGGTTAAACACTATTGAGTAAAAGAATAATGGAATCGCTGTGCATTTGACATAAAAGT
1 AGATGAACAGTTAAACACCATTGAGTAAAAGAATAATGGAATAACTGTGCATTTGACAGAAAAGT
6632006 GTCAAATATGCAAGTTAGATGAA
66 GTCAAATATGCAAGTTAGATGAA
6632029 AGACTAAATA
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
110 76 1.00
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (110 bp):
AGATGAACAGTTAAACACCATTGAGTAAAAGAATAATGGAATAACTGTGCATTTGACAGAAAAGT
GTCAAATATGCAAGTTAGATGAACGGTTAAACACTGTTGAGTAAA
Found at i:6632050 original size:110 final size:110
Alignment explanation
Indices: 6631831--6632053 Score: 277
Period size: 110 Copynumber: 2.0 Consensus size: 110
6631821 TATGCCAGTT
* ** *
6631831 AGATGAACAGTTAAACACCGTTGAGTAAAAGAATAATGGTCTAACTGTGCATTTGGCAGAAAAGT
1 AGATGAACAGTTAAACACCATTGAGTAAAAGAATAATGGAATAACTGTGCATTTGACAGAAAAGT
* * * * **
6631896 GTGAATTATGCCAGTTAGATGAACGGTTAAACACTGTTGAGTAAA
66 GTCAAATATGCAAGTTAGATGAAAGACTAAACACTGTTGAGTAAA
* * ** *
6631941 AGATGAACGGTTAAACACTATTGAGTAAAAGAATAATGGAATCGCTGTGCATTTGACATAAAAGT
1 AGATGAACAGTTAAACACCATTGAGTAAAAGAATAATGGAATAACTGTGCATTTGACAGAAAAGT
* *
6632006 GTCAAATATGCAAGTTAGATGAAAGACTAAATACCT-TTGGGTAAA
66 GTCAAATATGCAAGTTAGATGAAAGACTAAACA-CTGTTGAGTAAA
6632051 AGA
1 AGA
6632054 ATAAAGGAAT
Statistics
Matches: 95, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
110 93 0.98
111 2 0.02
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.26
Consensus pattern (110 bp):
AGATGAACAGTTAAACACCATTGAGTAAAAGAATAATGGAATAACTGTGCATTTGACAGAAAAGT
GTCAAATATGCAAGTTAGATGAAAGACTAAACACTGTTGAGTAAA
Found at i:6636662 original size:39 final size:39
Alignment explanation
Indices: 6636608--6636685 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
6636598 TGCAAAAACT
* *
6636608 TAAGAAGTTCATACTAAGTGTATGAATTTATGTATGGGC
1 TAAGAAATTCATACTAAGTGTATGAATTTACGTATGGGC
* *
6636647 TAAGAAATTCATACTAAGTGTTTGAATTTCCGTATGGGC
1 TAAGAAATTCATACTAAGTGTATGAATTTACGTATGGGC
6636686 GCTATGTGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.36
Consensus pattern (39 bp):
TAAGAAATTCATACTAAGTGTATGAATTTACGTATGGGC
Found at i:6637027 original size:68 final size:68
Alignment explanation
Indices: 6636917--6637097 Score: 253
Period size: 68 Copynumber: 2.7 Consensus size: 68
6636907 TATTAATAGG
* * *
6636917 CCTAACTGTGCATTTGAT-AGAAATGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
1 CCTAACTGTGCATTTGATCAGAAA-GTGTCATTTATGCTAGTTAGATGAAAGACTAAGTACCTTT
6636981 GAGA
65 GAGA
6636985 CCTAACTGTGCATTT-ATCAGAAAGATGTCATTTATGCTAGTTAGATGAAAGACTAAGTACCTTT
1 CCTAACTGTGCATTTGATCAGAAAG-TGTCATTTATGCTAGTTAGATGAAAGACTAAGTACCTTT
*
6637049 GAGG
65 GAGA
*
6637053 TCTAACTGTGCATTTGA-CAGAAAGGTGTCATTTATG-TCAGTTAGA
1 CCTAACTGTGCATTTGATCAGAAA-GTGTCATTTATGCT-AGTTAGA
6637098 GGAGAGGAAA
Statistics
Matches: 103, Mismatches: 5, Indels: 10
0.87 0.04 0.08
Matches are distributed among these distances:
67 4 0.04
68 97 0.94
69 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.33
Consensus pattern (68 bp):
CCTAACTGTGCATTTGATCAGAAAGTGTCATTTATGCTAGTTAGATGAAAGACTAAGTACCTTTG
AGA
Found at i:6639712 original size:286 final size:287
Alignment explanation
Indices: 6639157--6639838 Score: 849
Period size: 287 Copynumber: 2.4 Consensus size: 287
6639147 TAATTAACCC
* * *
6639157 TAAATTAAACAACACATATGGATCAAATTGTAACAATTATAAATA-TAAAGCTAAAATTAATATA
1 TAAATTAAACAACA-ATAAGGATCAAATTGAAACAATTATAAA-AGTAAAGCTAAAATTAATATC
* * * * * *
6639221 AAAATGGACAAAATTGCATTCA-TTAAAAAGCTGGTGAACAAAAGTTTATATGGTTTGGAGATTG
64 AAATTGGACTAAATTGCATTCATTTTAAAAGCTGGTGAACAAAAGTTTATAAGATTTGGAGATTA
* * ** *
6639285 TGATATACTTTATAAGGGTTGAAATGAAGTTTATGATGTGATTTATAAGGTTTGGAGTAAATTAC
129 TGATATAATTTATAAGGGTTGAAATGAAATTTATGATGTGATTTATAAGGTTCAGAGTAAACTAC
* *
6639350 AAAAAAATAGAAATAATTATGAGCTAATTTAGGATAAAAACAAACTTTTAAGAACTAAACTGAAC
194 AAAAAAATAAAAATAATTATGAGCAAATTTAGGATAAAAACAAACTTTTAAGAACTAAACTGAAC
6639415 AAACATGAAATTACAAAATGAAA-TTAAA
259 AAACATGAAATTACAAAATGAAATTTAAA
* * ** *
6639443 TAAATTAAACAATAATAAGGATCAAATTGAAACAATTGTAAAACGTAAAGCTGGAATTAGTATCA
1 TAAATTAAACAACAATAAGGATCAAATTGAAACAATTATAAAA-GTAAAGCTAAAATTAATATCA
* * * *
6639508 AATTGGGCTAAATTGCATTCATTTTAAAAGTTGGTGGACAAAAGTTTGTAAGATTTGGAGATTAT
65 AATTGGACTAAATTGCATTCATTTTAAAAGCTGGTGAACAAAAGTTTATAAGATTTGGAGATTAT
** *
6639573 GATATAATTTATGGGGGTTGAAATGAAATTTATGATGTGATTTATAGGGTTCAGAGTAAACTAC-
130 GATATAATTTATAAGGGTTGAAATGAAATTTATGATGTGATTTATAAGGTTCAGAGTAAACTACA
* * * * **
6639637 AAAAAATAAAAA-ATATTATGGGTCAAATTT-GGATAAAAATAATCTTTTAAGGACTAATTTGAA
195 AAAAAATAAAAATA-ATTATGAG-CAAATTTAGGATAAAAACAAACTTTTAAGAACTAAACTGAA
* * *
6639700 CAACCATGAAATTACAAACTTAAATTTAAA
258 CAAACATGAAATTACAAAATGAAATTTAAA
* * * *
6639730 TAAATTATACAGC-ATACAGAGATCAAATTGAAATAATTATAAAATGTAAAGTTAAAATTAATAT
1 TAAATTAAACAACAATA-AG-GATCAAATTGAAACAATTATAAAA-GTAAAGCTAAAATTAATAT
*
6639794 CAAATTGGATTAAATTGCATTCATTTT-AAAGCGTGGTGAACAAAA
63 CAAATTGGACTAAATTGCATTCATTTTAAAAGC-TGGTGAACAAAA
6639839 ATTGAACGTC
Statistics
Matches: 336, Mismatches: 51, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
284 1 0.00
285 26 0.08
286 117 0.35
287 119 0.35
288 73 0.22
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.31
Consensus pattern (287 bp):
TAAATTAAACAACAATAAGGATCAAATTGAAACAATTATAAAAGTAAAGCTAAAATTAATATCAA
ATTGGACTAAATTGCATTCATTTTAAAAGCTGGTGAACAAAAGTTTATAAGATTTGGAGATTATG
ATATAATTTATAAGGGTTGAAATGAAATTTATGATGTGATTTATAAGGTTCAGAGTAAACTACAA
AAAAATAAAAATAATTATGAGCAAATTTAGGATAAAAACAAACTTTTAAGAACTAAACTGAACAA
ACATGAAATTACAAAATGAAATTTAAA
Found at i:6639928 original size:4 final size:4
Alignment explanation
Indices: 6639899--6639998 Score: 119
Period size: 4 Copynumber: 25.0 Consensus size: 4
6639889 TTGACGCATG
* * * * * *
6639899 GTAT GTAC GTAT GTAC ATAC GTAT GTAT GTAT GTAC GCAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
* * *
6639947 GTAT GTAT ATAT GTAT ATAT GTAT ATAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
6639995 GTAT
1 GTAT
6639999 CCATATCATA
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 80 1.00
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (4 bp):
GTAT
Found at i:6640048 original size:4 final size:4
Alignment explanation
Indices: 6640031--6640095 Score: 51
Period size: 4 Copynumber: 15.5 Consensus size: 4
6640021 TATTAATATT
* * * *
6640031 ATAC ATATC ATAC ATAC ATAC ATTGC ATGC ATGC AT-C AAAAC ATAC ATATC
1 ATAC ATA-C ATAC ATAC ATAC A-TAC ATAC ATAC ATAC -ATAC ATAC ATA-C
6640082 ATAC ATAC ATAC AT
1 ATAC ATAC ATAC AT
6640096 TGCATGCATG
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
3 1 0.02
4 40 0.75
5 12 0.23
ACGTcount: A:0.45, C:0.23, G:0.05, T:0.28
Consensus pattern (4 bp):
ATAC
Found at i:6640049 original size:13 final size:13
Alignment explanation
Indices: 6640031--6640092 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
6640021 TATTAATATT
6640031 ATACATATCATAC
1 ATACATATCATAC
*
6640044 ATACATA-CATTGC
1 ATACATATCA-TAC
* *
6640057 ATGCATGCATCAAAAC
1 ATACAT--ATC-ATAC
6640073 ATACATATCATAC
1 ATACATATCATAC
6640086 ATACATA
1 ATACATA
6640093 CATTGCATGC
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
12 2 0.05
13 24 0.63
14 3 0.08
15 1 0.03
16 7 0.18
17 1 0.03
ACGTcount: A:0.45, C:0.23, G:0.05, T:0.27
Consensus pattern (13 bp):
ATACATATCATAC
Found at i:6640131 original size:46 final size:42
Alignment explanation
Indices: 6640031--6640138 Score: 182
Period size: 42 Copynumber: 2.6 Consensus size: 42
6640021 TATTAATATT
6640031 ATACATATCATACATACATACATTGCATGCATGCATCAAAAC
1 ATACATATCATACATACATACATTGCATGCATGCATCAAAAC
6640073 ATACATATCATACATACATACATTGCATGCATGCATCAAAAC
1 ATACATATCATACATACATACATTGCATGCATGCATCAAAAC
* *
6640115 ATATATA-AATTACATACATACATT
1 ATACATATCA-TACATACATACATT
6640139 AATAAATTAT
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
41 1 0.02
42 62 0.98
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (42 bp):
ATACATATCATACATACATACATTGCATGCATGCATCAAAAC
Found at i:6640737 original size:14 final size:14
Alignment explanation
Indices: 6640718--6640748 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
6640708 TAAATGAATC
6640718 ATTTAAATAAAATA
1 ATTTAAATAAAATA
6640732 ATTTAAATAAAATA
1 ATTTAAATAAAATA
6640746 ATT
1 ATT
6640749 AATAAATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATTTAAATAAAATA
Found at i:6641373 original size:37 final size:39
Alignment explanation
Indices: 6641325--6641429 Score: 142
Period size: 37 Copynumber: 2.7 Consensus size: 39
6641315 AGTTACAATT
* *
6641325 AAATTTTTTAATCTAATGATCATAATTAATAT-AGAA-A
1 AAATTTATTAATCTAATAATCATAATTAATATAAGAAGA
* *
6641362 AAATTTATTAATCTAATTATCATAATTAATATAAGAAGT
1 AAATTTATTAATCTAATAATCATAATTAATATAAGAAGA
* *
6641401 ATATTTATTAATCTCATAATCATAATTAA
1 AAATTTATTAATCTAATAATCATAATTAA
6641430 GTTTATTAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
37 30 0.50
38 4 0.07
39 26 0.43
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.42
Consensus pattern (39 bp):
AAATTTATTAATCTAATAATCATAATTAATATAAGAAGA
Found at i:6641452 original size:27 final size:27
Alignment explanation
Indices: 6641404--6641456 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
6641394 AAGAAGTATA
* *
6641404 TTTATTAATCTCATAATCATAATTAAG
1 TTTATTAATATAATAATCATAATTAAG
* *
6641431 TTTATTAATATAATGATTATAATTAA
1 TTTATTAATATAATAATCATAATTAA
6641457 TAATTTGTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (27 bp):
TTTATTAATATAATAATCATAATTAAG
Found at i:6642687 original size:57 final size:57
Alignment explanation
Indices: 6642586--6642886 Score: 460
Period size: 57 Copynumber: 5.3 Consensus size: 57
6642576 TAACAGCCCT
*
6642586 CAAG-CAAAGCCAGAAGGAGAAAAGAAGCCTACTTATGGCACAAATCAAGACACCTA
1 CAAGCCAAAACCAGAAGGAGAAAAGAAGCCTACTTATGGCACAAATCAAGACACCTA
*
6642642 CAAGCCAAAACCAAAAGGAGAAAAGAAGCCTACTTATGGCACAAATCAAGACACCTA
1 CAAGCCAAAACCAGAAGGAGAAAAGAAGCCTACTTATGGCACAAATCAAGACACCTA
* * * * **
6642699 CAAGCTAAAACCAGAAGGAGAAAAGAAGCCTAATTATGGTACAAATCAGGACATTTA
1 CAAGCCAAAACCAGAAGGAGAAAAGAAGCCTACTTATGGCACAAATCAAGACACCTA
* * *
6642756 CAAGCCAAAACCAGAAGGAGAAGAGAAGCCTAATTATGTCACAAATCAAGACACCTA
1 CAAGCCAAAACCAGAAGGAGAAAAGAAGCCTACTTATGGCACAAATCAAGACACCTA
* * * *
6642813 CAAGCTAAAACCAGAAGGAGAAAAGAAACCTACTTATGACACAAATCAAGGCACCTA
1 CAAGCCAAAACCAGAAGGAGAAAAGAAGCCTACTTATGGCACAAATCAAGACACCTA
6642870 CAAGCCAAAACCAGAAG
1 CAAGCCAAAACCAGAAG
6642887 AAAACGAAAA
Statistics
Matches: 221, Mismatches: 23, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
56 4 0.02
57 217 0.98
ACGTcount: A:0.48, C:0.22, G:0.18, T:0.12
Consensus pattern (57 bp):
CAAGCCAAAACCAGAAGGAGAAAAGAAGCCTACTTATGGCACAAATCAAGACACCTA
Found at i:6644078 original size:18 final size:18
Alignment explanation
Indices: 6644051--6644118 Score: 84
Period size: 18 Copynumber: 3.8 Consensus size: 18
6644041 GATTTTAGTC
6644051 CTTT-ATCCGTTAACTCT
1 CTTTAATCCGTTAACTCT
**
6644068 CTTTAATCCGTTATTTCT
1 CTTTAATCCGTTAACTCT
**
6644086 CTTTAATCCGTTATTTCT
1 CTTTAATCCGTTAACTCT
*
6644104 CTTTAATCCTTTAAC
1 CTTTAATCCGTTAAC
6644119 GGAAATATTA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
17 4 0.09
18 41 0.91
ACGTcount: A:0.19, C:0.25, G:0.04, T:0.51
Consensus pattern (18 bp):
CTTTAATCCGTTAACTCT
Found at i:6645141 original size:3 final size:3
Alignment explanation
Indices: 6645124--6645207 Score: 150
Period size: 3 Copynumber: 28.0 Consensus size: 3
6645114 CTGTATTTTG
* *
6645124 TAA TAA TAT TTA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6645172 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6645208 AAGGATAATG
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 77 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:6645225 original size:14 final size:14
Alignment explanation
Indices: 6645138--6645216 Score: 50
Period size: 15 Copynumber: 5.4 Consensus size: 14
6645128 AATATTTATA
**
6645138 ATAATAATAATAATA
1 ATAATAATAA-AAGG
**
6645153 ATAATAATAATAATA
1 ATAATAATAA-AAGG
**
6645168 ATAATAATAATAATA
1 ATAATAATAA-AAGG
**
6645183 ATAATAATAATAATA
1 ATAATAATAA-AAGG
6645198 ATAATAATAAAAGG
1 ATAATAATAAAAGG
6645212 ATAAT
1 ATAAT
6645217 GATATAAGGT
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
14 7 0.11
15 55 0.89
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
ATAATAATAAAAGG
Found at i:6645608 original size:53 final size:54
Alignment explanation
Indices: 6645484--6645608 Score: 173
Period size: 53 Copynumber: 2.4 Consensus size: 54
6645474 ATCAGACGAG
* * *
6645484 TTCTTCTCATTATGAAC-CCTTCCATTGAAAATGTCGAGCCAAAGTTGAACAAG
1 TTCTTCTCATTATGAACTTCTTCCACTGAAAATGTCGAGCCAAAGTTGAACAAA
* * * *
6645537 TTCTTCTCATTATGAACTTCTT-CACTGGAAATGTTGTGCCAAGGTTGAACAAA
1 TTCTTCTCATTATGAACTTCTTCCACTGAAAATGTCGAGCCAAAGTTGAACAAA
6645590 TTCTTCTCATTATGAACTT
1 TTCTTCTCATTATGAACTT
6645609 TTACTCCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
53 61 0.95
54 3 0.05
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (54 bp):
TTCTTCTCATTATGAACTTCTTCCACTGAAAATGTCGAGCCAAAGTTGAACAAA
Found at i:6645695 original size:145 final size:145
Alignment explanation
Indices: 6645432--6645704 Score: 426
Period size: 145 Copynumber: 1.9 Consensus size: 145
6645422 TAGACGAGTA
*
6645432 AAGGTTGAAAAAGTCCTTCTCATTATGAACTTCTTGTCCCTCATCAGACGAGTTCTTCTCATTAT
1 AAGGTTGAAAAAGTCCTTCTCATTATGAACTTCTTCTCCCTCATCAGACGAGTTCTTCTCATTAT
6645497 GAACCCTTCCATTGAAAATGTCGAGCCAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCAC
66 GAACCCTTCCATTGAAAATGTCGAGCCAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCAC
6645562 TGGAAATGTTGTGCC
131 TGGAAATGTTGTGCC
* * *
6645577 AAGGTTGAACAAA-TTCTTCTCATTATGAACTT-TTACTCCCTCATCGGATGAGTTCTTCTCATT
1 AAGGTTGAA-AAAGTCCTTCTCATTATGAACTTCTT-CTCCCTCATCAGACGAGTTCTTCTCATT
* * * *
6645640 ATGAACTC-TCCTATTGGAAATGTTGAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTT
64 ATGAACCCTTCC-ATTGAAAATGTCGAGCCAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTT
6645704 C
128 C
6645705 TCCCTCATCG
Statistics
Matches: 117, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
144 5 0.04
145 109 0.93
146 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (145 bp):
AAGGTTGAAAAAGTCCTTCTCATTATGAACTTCTTCTCCCTCATCAGACGAGTTCTTCTCATTAT
GAACCCTTCCATTGAAAATGTCGAGCCAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCAC
TGGAAATGTTGTGCC
Found at i:6645792 original size:91 final size:91
Alignment explanation
Indices: 6645535--6645847 Score: 511
Period size: 92 Copynumber: 3.4 Consensus size: 91
6645525 AAGTTGAACA
* * *
6645535 AGTTCTTCTCATTATGAACTTCTTCACTGGAAATGTTGTGCCAAGGTTGAACAAATTCTTCTCAT
1 AGTTCTTCTCATTATGAAC-TCTCCACTGGAAATGTTGAGCCAAGGTTGAACAAGTTCTTCTCAT
6645600 TATGAACTT-TTACTCCCTCATCGGATG
65 TATGAACTTCTT-CTCCCTCATCGGATG
*
6645627 AGTTCTTCTCATTATGAACTCTCCTATTGGAAATGTTGAGCCAAGGTTGAACAAGTTCTTCTCAT
1 AGTTCTTCTCATTATGAACTCTCC-ACTGGAAATGTTGAGCCAAGGTTGAACAAGTTCTTCTCAT
6645692 TATGAACTTCTTCTCCCTCATCGGATG
65 TATGAACTTCTTCTCCCTCATCGGATG
6645719 AGTTCTTCTCATTATGAACTCTCCACTGGAAATGTTGAGCCAAGGTTGAACAAGTTCTTCTCATT
1 AGTTCTTCTCATTATGAACTCTCCACTGGAAATGTTGAGCCAAGGTTGAACAAGTTCTTCTCATT
*
6645784 ATGAACTTCTTCTCCCTCGTCGGATG
66 ATGAACTTCTTCTCCCTCATCGGATG
* * * *
6645810 AGTTCTTCTCATTATAAACTCTCAATTGGATATGTTGA
1 AGTTCTTCTCATTATGAACTCTCCACTGGAAATGTTGA
6645848 TTGGTTTATC
Statistics
Matches: 209, Mismatches: 10, Indels: 5
0.93 0.04 0.02
Matches are distributed among these distances:
91 103 0.49
92 104 0.50
93 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (91 bp):
AGTTCTTCTCATTATGAACTCTCCACTGGAAATGTTGAGCCAAGGTTGAACAAGTTCTTCTCATT
ATGAACTTCTTCTCCCTCATCGGATG
Found at i:6646726 original size:6 final size:6
Alignment explanation
Indices: 6646717--6646780 Score: 53
Period size: 6 Copynumber: 10.7 Consensus size: 6
6646707 CTTTTTTTGC
* * *
6646717 TTTTCT TTTTC- TTCT-T TTTTCT TTATT-T CCTTTCTT TTTTAT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TT-TTCT -TTTTC-T TTTTCT TTTTCT
6646765 TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTT
6646781 GACAACGTAG
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
5 6 0.13
6 33 0.72
7 6 0.13
8 1 0.02
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTCT
Found at i:6646729 original size:20 final size:19
Alignment explanation
Indices: 6646706--6646774 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 19
6646696 ACCTCGAACC
6646706 TCTTTTTTTGCTTTTCTTTT
1 TCTTTTTTT-CTTTTCTTTT
6646726 TCTTCTTTTTTCTTTAT-TTCCTT
1 TC-T-TTTTTTCTTT-TCTT--TT
6646749 TCTTTTTTAT-TTTTCTTTT
1 TCTTTTTT-TCTTTTCTTTT
6646768 TCTTTTT
1 TCTTTTT
6646775 CTTTTTGACA
Statistics
Matches: 42, Mismatches: 0, Indels: 15
0.74 0.00 0.26
Matches are distributed among these distances:
19 9 0.21
20 3 0.07
21 17 0.40
22 9 0.21
23 4 0.10
ACGTcount: A:0.03, C:0.16, G:0.01, T:0.80
Consensus pattern (19 bp):
TCTTTTTTTCTTTTCTTTT
Found at i:6650168 original size:7 final size:7
Alignment explanation
Indices: 6650156--6650185 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
6650146 TATTGGAATG
6650156 TAAAGAA
1 TAAAGAA
6650163 TAAAGAA
1 TAAAGAA
*
6650170 TATAGAA
1 TAAAGAA
6650177 TAAAGAA
1 TAAAGAA
6650184 TA
1 TA
6650186 TGATACAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (7 bp):
TAAAGAA
Found at i:6651724 original size:18 final size:18
Alignment explanation
Indices: 6651677--6651712 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
6651667 TTTTGGTACT
6651677 ACCACTGCCTTGGCTTTG
1 ACCACTGCCTTGGCTTTG
*
6651695 ACCACTACCTTGGCTTTG
1 ACCACTGCCTTGGCTTTG
6651713 GCCTTTGCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.33, G:0.19, T:0.33
Consensus pattern (18 bp):
ACCACTGCCTTGGCTTTG
Found at i:6660492 original size:17 final size:17
Alignment explanation
Indices: 6660470--6660503 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
6660460 TAAATAATAA
* *
6660470 TTTTATTTTTCTTTTAT
1 TTTTATTCTTATTTTAT
6660487 TTTTATTCTTATTTTAT
1 TTTTATTCTTATTTTAT
6660504 AGATAATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTATTCTTATTTTAT
Found at i:6670559 original size:30 final size:31
Alignment explanation
Indices: 6670517--6670584 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 31
6670507 AATGCCTCAG
* *
6670517 ATTTT-CTGGGGTTTGCTGATTCTGACCCTA
1 ATTTTCCTGGGGTTTACTGAATCTGACCCTA
*
6670547 ATTTTCCT-GGGTTTACTGAATCTGACCCTG
1 ATTTTCCTGGGGTTTACTGAATCTGACCCTA
6670577 ATTTTCCT
1 ATTTTCCT
6670585 TTTTTTTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 32 0.94
31 2 0.06
ACGTcount: A:0.15, C:0.22, G:0.19, T:0.44
Consensus pattern (31 bp):
ATTTTCCTGGGGTTTACTGAATCTGACCCTA
Found at i:6670678 original size:30 final size:31
Alignment explanation
Indices: 6670636--6670703 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 31
6670626 TGGTCGATGG
* *
6670636 ATTTT-CTGGGGTTTGCTGATTCTGACCCTA
1 ATTTTCCTGGGGTTTACTGAATCTGACCCTA
*
6670666 ATTTTCCT-GGGTTTACTGAATCTGACCCTG
1 ATTTTCCTGGGGTTTACTGAATCTGACCCTA
6670696 ATTTTCCT
1 ATTTTCCT
6670704 TTTTTTTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 32 0.94
31 2 0.06
ACGTcount: A:0.15, C:0.22, G:0.19, T:0.44
Consensus pattern (31 bp):
ATTTTCCTGGGGTTTACTGAATCTGACCCTA
Found at i:6670727 original size:119 final size:118
Alignment explanation
Indices: 6670516--6670752 Score: 465
Period size: 119 Copynumber: 2.0 Consensus size: 118
6670506 TAATGCCTCA
6670516 GATTTTCTGGGGTTTGCTGATTCTGACCCTAATTTTCCTGGGTTTACTGAATCTGACCCTGATTT
1 GATTTTCTGGGGTTTGCTGATTCTGACCCTAATTTTCCTGGGTTTACTGAATCTGACCCTGATTT
6670581 TCCTTTTTTTTATATTGCTGAGATGATGGTTTGGCACAATGAAGATGGTCGATG
66 TCCTTTTTTTTATATTGCTGAGATGATGG-TTGGCACAATGAAGATGGTCGATG
6670635 GATTTTCTGGGGTTTGCTGATTCTGACCCTAATTTTCCTGGGTTTACTGAATCTGACCCTGATTT
1 GATTTTCTGGGGTTTGCTGATTCTGACCCTAATTTTCCTGGGTTTACTGAATCTGACCCTGATTT
6670700 TCCTTTTTTTTATATTGCTGAGATGATGGTTGGCACAATGAAGATGGTCGATG
66 TCCTTTTTTTTATATTGCTGAGATGATGGTTGGCACAATGAAGATGGTCGATG
6670753 CTTCAGTCGA
Statistics
Matches: 118, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
118 24 0.20
119 94 0.80
ACGTcount: A:0.19, C:0.16, G:0.24, T:0.42
Consensus pattern (118 bp):
GATTTTCTGGGGTTTGCTGATTCTGACCCTAATTTTCCTGGGTTTACTGAATCTGACCCTGATTT
TCCTTTTTTTTATATTGCTGAGATGATGGTTGGCACAATGAAGATGGTCGATG
Found at i:6672073 original size:26 final size:26
Alignment explanation
Indices: 6672044--6672099 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
6672034 ATCTTGTCAG
6672044 GTCAGGTCAAATCAGATATAGGTTGA
1 GTCAGGTCAAATCAGATATAGGTTGA
6672070 GTCAGGTCAAATCAGATATAGGTTGA
1 GTCAGGTCAAATCAGATATAGGTTGA
6672096 GTCA
1 GTCA
6672100 AGTTAATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.27
Consensus pattern (26 bp):
GTCAGGTCAAATCAGATATAGGTTGA
Found at i:6678638 original size:21 final size:22
Alignment explanation
Indices: 6678614--6678671 Score: 55
Period size: 23 Copynumber: 2.6 Consensus size: 22
6678604 CCTTTGAATA
6678614 TGCATCGAT-ACACCATGAAGG
1 TGCATCGATCACACCATGAAGG
* * * *
6678635 TGCACCGATGCACTCCTTGAATG
1 TGCATCGAT-CACACCATGAAGG
6678658 TGCATCGATGCACA
1 TGCATCGAT-CACA
6678672 AGGCCAAGCA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 8 0.28
23 21 0.72
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (22 bp):
TGCATCGATCACACCATGAAGG
Found at i:6681457 original size:65 final size:63
Alignment explanation
Indices: 6681382--6681541 Score: 198
Period size: 65 Copynumber: 2.5 Consensus size: 63
6681372 GAATAAATTG
* * * * *
6681382 AACATTGAATGCATTATATGCATCGATGCACATA-CCATGCATCGGTGCACTC-AGGTTTTTATG
1 AACATCGAATGCATT-TATGCATCGATGCACA-AGACATGCATCGATGCACTCAAGCTATTT-TG
6681445 AA
63 -A
6681447 AACATCGAATGCATTTGATGCATCGATGCACAAGACATGCATCGATGCACTCAAGCTATTTTGA
1 AACATCGAATGCATTT-ATGCATCGATGCACAAGACATGCATCGATGCACTCAAGCTATTTTGA
*
6681511 AACATCGAATGCACTTCATGCATCGATGCAC
1 AACATCGAATGCA-TTTATGCATCGATGCAC
6681542 TCTTAGTGCA
Statistics
Matches: 85, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
64 30 0.35
65 49 0.58
66 6 0.07
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.28
Consensus pattern (63 bp):
AACATCGAATGCATTTATGCATCGATGCACAAGACATGCATCGATGCACTCAAGCTATTTTGA
Found at i:6681541 original size:17 final size:19
Alignment explanation
Indices: 6681513--6681561 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
6681503 TATTTTGAAA
6681513 CATCGAATGCACT-TCA-TG
1 CATCG-ATGCACTCTCAGTG
*
6681531 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTCAGTG
*
6681550 CACCGATGCACT
1 CATCGATGCACT
6681562 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTCAGTG
Found at i:6682745 original size:2 final size:2
Alignment explanation
Indices: 6682738--6682778 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
6682728 GAAGTATGGG
*
6682738 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6682779 CTTATACTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:6683243 original size:16 final size:16
Alignment explanation
Indices: 6683215--6683256 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
6683205 TTCATCAATT
6683215 GTAACTTAT-AAGTTAG
1 GTAA-TTATCAAGTTAG
6683231 GTAATTATCAAGTTAG
1 GTAATTATCAAGTTAG
*
6683247 GTAAATATCA
1 GTAATTATCA
6683257 GATCAGCTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 4 0.17
16 20 0.83
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.36
Consensus pattern (16 bp):
GTAATTATCAAGTTAG
Found at i:6684025 original size:15 final size:17
Alignment explanation
Indices: 6683994--6684026 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
6683984 TTATTTTTTA
6683994 TATTATATAATTATGTT
1 TATTATATAATTATGTT
6684011 TATTAT-TAA-TATGTT
1 TATTATATAATTATGTT
6684026 T
1 T
6684027 TACCTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (17 bp):
TATTATATAATTATGTT
Found at i:6684710 original size:16 final size:17
Alignment explanation
Indices: 6684689--6684727 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
6684679 TTAAGAAATG
6684689 TTTTTAG-TTTTAATAT
1 TTTTTAGATTTTAATAT
6684705 TTTTTAGTATTTTAATAT
1 TTTTTAG-ATTTTAATAT
6684723 TTTTT
1 TTTTT
6684728 CTATTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 7 0.33
18 14 0.67
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (17 bp):
TTTTTAGATTTTAATAT
Found at i:6684725 original size:17 final size:18
Alignment explanation
Indices: 6684696--6684736 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
6684686 ATGTTTTTAG
*
6684696 TTTTAATATTTTTTAGTA
1 TTTTAATATTTTTTACTA
6684714 TTTTAATATTTTTT-CTA
1 TTTTAATATTTTTTACTA
6684731 TTTTAA
1 TTTTAA
6684737 AGTTGCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (18 bp):
TTTTAATATTTTTTACTA
Found at i:6685360 original size:2 final size:2
Alignment explanation
Indices: 6685353--6685391 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
6685343 ATTAGTGTAA
*
6685353 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AA AT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6685392 AAAAGTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 31 0.94
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:6686997 original size:14 final size:13
Alignment explanation
Indices: 6686978--6687007 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
6686968 CTCTAAAGTG
6686978 CATCACAAGTCACA
1 CATCACAAGTCA-A
6686992 CATCACAAGTCAA
1 CATCACAAGTCAA
6687005 CAT
1 CAT
6687008 AAAATTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.43, C:0.33, G:0.07, T:0.17
Consensus pattern (13 bp):
CATCACAAGTCAA
Found at i:6687023 original size:17 final size:18
Alignment explanation
Indices: 6687001--6687038 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
6686991 ACATCACAAG
6687001 TCAACATAAAATT-ATAT
1 TCAACATAAAATTAATAT
*
6687018 TCAACATAACATTAATAT
1 TCAACATAAAATTAATAT
6687036 TCA
1 TCA
6687039 TAGTTCGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (18 bp):
TCAACATAAAATTAATAT
Found at i:6689647 original size:44 final size:44
Alignment explanation
Indices: 6689584--6689718 Score: 254
Period size: 44 Copynumber: 3.1 Consensus size: 44
6689574 CCAAAACCAG
6689584 AAGGAGAAGAGAAGCCTAACTATGGCACAAATCAAGACACCTAC
1 AAGGAGAAGAGAAGCCTAACTATGGCACAAATCAAGACACCTAC
6689628 AAGGAGAAGAGAAGCCTAACTATGGCACAAATCAAGACACCTAC
1 AAGGAGAAGAGAAGCCTAACTATGGCACAAATCAAGACACCTAC
6689672 AAGGAGAAGAGAAGCCT-ACTTATGGCACAAATCAAGACACCTAC
1 AAGGAGAAGAGAAGCCTAAC-TATGGCACAAATCAAGACACCTAC
6689716 AAG
1 AAG
6689719 CCAAAACCAG
Statistics
Matches: 90, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
43 2 0.02
44 88 0.98
ACGTcount: A:0.45, C:0.22, G:0.21, T:0.12
Consensus pattern (44 bp):
AAGGAGAAGAGAAGCCTAACTATGGCACAAATCAAGACACCTAC
Found at i:6689823 original size:57 final size:57
Alignment explanation
Indices: 6689754--6690031 Score: 488
Period size: 57 Copynumber: 4.9 Consensus size: 57
6689744 CTACTTATGG
* * *
6689754 CTTATGGCACAAATCAAGACACCTACAAGACAAAACCAGGAGGAGAAAAGAAGCCTA
1 CTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAAGAGAAGCCTA
6689811 CTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAAGAGAAGCCTA
1 CTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAAGAGAAGCCTA
*
6689868 ATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAAGAGAAGCCTA
1 CTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAAGAGAAGCCTA
*
6689925 CTTATGGCACAAATCAAGACACCAACAAGCCAAAACCAGAAGGAGAAGAGAAGCCTA
1 CTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAAGAGAAGCCTA
*
6689982 ATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAA-GAGAA-AGAA
1 CTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAAGAGAA
6690032 AAATCTGGTT
Statistics
Matches: 213, Mismatches: 8, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
55 4 0.02
56 5 0.02
57 204 0.96
ACGTcount: A:0.48, C:0.23, G:0.19, T:0.10
Consensus pattern (57 bp):
CTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAAGAGAAGCCTA
Found at i:6689934 original size:114 final size:114
Alignment explanation
Indices: 6689672--6690031 Score: 580
Period size: 114 Copynumber: 3.1 Consensus size: 114
6689662 AGACACCTAC
6689672 AAGGAGAAGAGAAGCCTACTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAA
1 AAGGAGAAGAGAAGCCTACTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAA
* * * *
6689737 AAAAAACCTACTTATGGCTTATGGCACAAATCAAGACACCTACAAGACAAAACCAG
66 GAGAAGCCTA---A----TTATGGCACAAATCAAGACACCTACAAGCCAAAACCAG
* *
6689793 GAGGAGAAAAGAAGCCTACTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAA
1 AAGGAGAAGAGAAGCCTACTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAA
6689858 GAGAAGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAG
66 GAGAAGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAG
*
6689907 AAGGAGAAGAGAAGCCTACTTATGGCACAAATCAAGACACCAACAAGCCAAAACCAGAAGGAGAA
1 AAGGAGAAGAGAAGCCTACTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAA
6689972 GAGAAGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAG
66 GAGAAGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAG
6690021 AA-GAGAA-AGAA
1 AAGGAGAAGAGAA
6690032 AAATCTGGTT
Statistics
Matches: 230, Mismatches: 9, Indels: 9
0.93 0.04 0.04
Matches are distributed among these distances:
112 4 0.02
113 5 0.02
114 150 0.65
118 1 0.00
121 70 0.30
ACGTcount: A:0.48, C:0.23, G:0.19, T:0.11
Consensus pattern (114 bp):
AAGGAGAAGAGAAGCCTACTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAA
GAGAAGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAG
Found at i:6690010 original size:171 final size:175
Alignment explanation
Indices: 6689672--6690031 Score: 570
Period size: 171 Copynumber: 2.1 Consensus size: 175
6689662 AGACACCTAC
*
6689672 AAGGAGAAGAGAAGCCTACTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAA
1 AAGGAGAAGAGAAGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAA
* *
6689737 AAAAAACCTACTTATGGCTTATGGCACAAATCAAGACACCTACAAGACAAAACCAGGAGGAGAAA
66 AAAAAACC-ACTTA--GCTTATGGCACAAATCAAGACACCAACAAGACAAAACCAGAAGGAGAAA
*
6689802 AGAAGCCTACTTATGGCACAAATCAAGACACCTACAAGCCAAAACCAG
128 AGAAGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAG
6689850 AAGGAGAAGAGAAGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAG-A
1 AAGGAGAAGAGAAGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAA
* * * * *
6689914 AGAGAAGC-C-TA-CTTATGGCACAAATCAAGACACCAACAAGCCAAAACCAGAAGGAGAAGAGA
66 AAAAAACCACTTAGCTTATGGCACAAATCAAGACACCAACAAGACAAAACCAGAAGGAGAAAAGA
6689976 AGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAG
131 AGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAG
6690021 AA-GAGAA-AGAA
1 AAGGAGAAGAGAA
6690032 AAATCTGGTT
Statistics
Matches: 173, Mismatches: 9, Indels: 9
0.91 0.05 0.05
Matches are distributed among these distances:
169 4 0.02
170 5 0.03
171 93 0.54
174 2 0.01
175 1 0.01
177 6 0.03
178 62 0.36
ACGTcount: A:0.48, C:0.23, G:0.19, T:0.11
Consensus pattern (175 bp):
AAGGAGAAGAGAAGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAGAAGGAGAA
AAAAAACCACTTAGCTTATGGCACAAATCAAGACACCAACAAGACAAAACCAGAAGGAGAAAAGA
AGCCTAATTATGGCACAAATCAAGACACCTACAAGCCAAAACCAG
Found at i:6693983 original size:17 final size:18
Alignment explanation
Indices: 6693961--6693997 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
6693951 TTCTAAAGAC
6693961 AATTTCTAAA-AA-AAACT
1 AATTTC-AAATAACAAACT
6693978 AATTTCAAATAACAAACT
1 AATTTCAAATAACAAACT
6693996 AA
1 AA
6693998 AGTAACAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 3 0.17
17 8 0.44
18 7 0.39
ACGTcount: A:0.59, C:0.14, G:0.00, T:0.27
Consensus pattern (18 bp):
AATTTCAAATAACAAACT
Found at i:6694241 original size:2 final size:2
Alignment explanation
Indices: 6694208--6694232 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6694198 GAAGCAATAC
6694208 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
6694233 AGGTATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6695476 original size:2 final size:2
Alignment explanation
Indices: 6695469--6695507 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
6695459 TTGACGGAGA
6695469 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6695508 AATTAATATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6702071 original size:26 final size:26
Alignment explanation
Indices: 6702016--6702069 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
6702006 TAATAATCCC
*
6702016 AAATATTTAATTTAAATTAACTAAAT
1 AAATATTTAATTTAAATTAAATAAAT
*
6702042 AAATATTTAA-TTAATTTGAAAT-AAT
1 AAATATTTAATTTAAATT-AAATAAAT
6702067 AAA
1 AAA
6702070 ATCCCTAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (26 bp):
AAATATTTAATTTAAATTAAATAAAT
Found at i:6704711 original size:23 final size:23
Alignment explanation
Indices: 6704668--6704711 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
6704658 AAGATATGGG
*
6704668 ATTTTTATAACACGTGAAAAGAA
1 ATTTTTATAACACATGAAAAGAA
*
6704691 ATTTTTATAACACATGGAAAG
1 ATTTTTATAACACATGAAAAG
6704712 GGGATTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (23 bp):
ATTTTTATAACACATGAAAAGAA
Found at i:6704718 original size:24 final size:23
Alignment explanation
Indices: 6704665--6704721 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
6704655 ATTAAGATAT
*
6704665 GGGATTTTTATAACACGTGAAAA
1 GGGATTTTTATAACACATGAAAA
** *
6704688 GAAATTTTTATAACACATGGAAAG
1 GGGATTTTTATAACACAT-GAAAA
6704712 GGGATTTTTA
1 GGGATTTTTA
6704722 GGGGATTCAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
23 15 0.56
24 12 0.44
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (23 bp):
GGGATTTTTATAACACATGAAAA
Found at i:6706118 original size:23 final size:23
Alignment explanation
Indices: 6706088--6706147 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
6706078 CCTATGCGGC
* *
6706088 ACTTCGGTGCATTTCTACGTGGA
1 ACTTCGGTGCATTTCTACATAGA
* *
6706111 ACTTCGGTGTATTTCTACATAGC
1 ACTTCGGTGCATTTCTACATAGA
6706134 ACTTCGGTGCATTT
1 ACTTCGGTGCATTT
6706148 TATACGAGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (23 bp):
ACTTCGGTGCATTTCTACATAGA
Found at i:6711890 original size:6 final size:6
Alignment explanation
Indices: 6711879--6711909 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
6711869 AAAACCCATA
*
6711879 GGTCAT GGTCAT GGTCAT GGTCAC GGTCAT G
1 GGTCAT GGTCAT GGTCAT GGTCAT GGTCAT G
6711910 ATACAAGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.16, C:0.19, G:0.35, T:0.29
Consensus pattern (6 bp):
GGTCAT
Found at i:6713028 original size:6 final size:6
Alignment explanation
Indices: 6713003--6713110 Score: 71
Period size: 6 Copynumber: 17.3 Consensus size: 6
6712993 TATATATTAT
*
6713003 AAGAAG AAGAAA AA-ACAA AAGAAA AA-AAA ACAGAAGA AA-AAA ATAGAAA
1 AAGAAA AAGAAA AAGA-AA AAGAAA AAGAAA A-AGAA-A AAGAAA A-AGAAA
* * * *
6713052 AAGAAA AAGAAA ACGAAGA AGAAAAA AATGAAA ACGAGA AAG-AA AAGAAA
1 AAGAAA AAGAAA AAGAA-A A-AGAAA AA-GAAA AAGAAA AAGAAA AAGAAA
6713102 AAGAGAA AA
1 AAGA-AA AA
6713111 AATGAGAGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 23
0.72 0.08 0.20
Matches are distributed among these distances:
5 11 0.14
6 46 0.57
7 20 0.25
8 4 0.05
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (6 bp):
AAGAAA
Found at i:6713030 original size:15 final size:15
Alignment explanation
Indices: 6713006--6713079 Score: 78
Period size: 15 Copynumber: 4.7 Consensus size: 15
6712996 ATATTATAAG
*
6713006 AAGAAGAAAAAACAA
1 AAGAAAAAAAAACAA
*
6713021 AAGAAAAAAAAACAG
1 AAGAAAAAAAAACAA
6713036 AAGAAAAAAATAGA-AA
1 AAGAAAAAAA-A-ACAA
6713052 AAGAAAAAGAAAACGAA
1 AAGAAAAA-AAAAC-AA
6713069 GAAGAAAAAAA
1 -AAGAAAAAAA
6713080 TGAAAACGAG
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
15 24 0.48
16 11 0.22
17 7 0.14
18 8 0.16
ACGTcount: A:0.80, C:0.04, G:0.15, T:0.01
Consensus pattern (15 bp):
AAGAAAAAAAAACAA
Found at i:6713071 original size:21 final size:22
Alignment explanation
Indices: 6713047--6713105 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 22
6713037 AGAAAAAAAT
6713047 AGAAAAAGAAAAAGAAAACGA-
1 AGAAAAAGAAAAAGAAAACGAG
*
6713068 AGAAGAAA-AAAATGAAAACGAG
1 AGAA-AAAGAAAAAGAAAACGAG
*
6713090 AAAGAAAAGAAAAAGA
1 AGA-AAAAGAAAAAGA
6713106 GAAAAAATGA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 16 0.52
22 8 0.26
23 7 0.23
ACGTcount: A:0.75, C:0.03, G:0.20, T:0.02
Consensus pattern (22 bp):
AGAAAAAGAAAAAGAAAACGAG
Found at i:6713085 original size:33 final size:33
Alignment explanation
Indices: 6713003--6713115 Score: 121
Period size: 33 Copynumber: 3.5 Consensus size: 33
6712993 TATATATTAT
6713003 AAGAAGAAGAAAAA--ACAAAAGAAAAA-AAAAC-
1 AAGAAGAA-AAAAATGA-AAAAGAAAAAGAAAACG
6713034 -AGAAGAAAAAAATAGAAAAAGAAAAAGAAAACG
1 AAGAAGAAAAAAAT-GAAAAAGAAAAAGAAAACG
* *
6713067 AAGAAGAAAAAAATGAAAACGAGAAAGAAAA-G
1 AAGAAGAAAAAAATGAAAAAGAAAAAGAAAACG
*
6713099 AAAAAGAGAAAAAATGA
1 AAGAAGA-AAAAAATGA
6713116 GAGATGAAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 12
0.83 0.03 0.14
Matches are distributed among these distances:
29 5 0.07
30 7 0.10
31 10 0.14
32 13 0.18
33 24 0.33
34 13 0.18
ACGTcount: A:0.76, C:0.04, G:0.18, T:0.03
Consensus pattern (33 bp):
AAGAAGAAAAAAATGAAAAAGAAAAAGAAAACG
Found at i:6718538 original size:18 final size:18
Alignment explanation
Indices: 6718517--6718554 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
6718507 AGTGGGGACC
6718517 AAAACGATGAAGATGTAG
1 AAAACGATGAAGATGTAG
6718535 AAAACGATGAAGATGTAG
1 AAAACGATGAAGATGTAG
6718553 AA
1 AA
6718555 GTATGCATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.05, G:0.26, T:0.16
Consensus pattern (18 bp):
AAAACGATGAAGATGTAG
Found at i:6721485 original size:46 final size:47
Alignment explanation
Indices: 6721432--6721545 Score: 133
Period size: 46 Copynumber: 2.4 Consensus size: 47
6721422 GTAACCATGC
6721432 AAATAAGCTTATGAGCTTACGGAA-T-AATGGCAAGTATATTGAAAAA
1 AAATAAGCTTATGAGCTTACGGAATTAAATGGCAAGTATATTG-AAAA
* * * * **
6721478 AAATAAGCTTACGAGCTTATGGAATTTTAAATGGTAAGTATTTTGGTAA
1 AAATAAGCTTATGAGCTTACGGAA--TTAAATGGCAAGTATATTGAAAA
6721527 AAATAAGCTTATGAGCTTA
1 AAATAAGCTTATGAGCTTA
6721546 TGGGATAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
46 22 0.39
49 21 0.37
50 14 0.25
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (47 bp):
AAATAAGCTTATGAGCTTACGGAATTAAATGGCAAGTATATTGAAAA
Found at i:6721543 original size:49 final size:46
Alignment explanation
Indices: 6721432--6721553 Score: 138
Period size: 49 Copynumber: 2.6 Consensus size: 46
6721422 GTAACCATGC
*
6721432 AAATAAGCTTATGAGCTTACGGAATAATGGCAAGTATATTGAAAAA
1 AAATAAGCTTATGAGCTTATGGAATAATGGCAAGTATATTGAAAAA
* * * **
6721478 AAATAAGCTTACGAGCTTATGGAATTTTAAATGGTAAGTATTTTG-GTAA
1 AAATAAGCTTATGAGCTTATGGAA---T-AATGGCAAGTATATTGAAAAA
*
6721527 AAATAAGCTTATGAGCTTATGGGATAA
1 AAATAAGCTTATGAGCTTATGGAATAA
6721554 AAGGTAAGAA
Statistics
Matches: 64, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
45 2 0.03
46 23 0.36
49 25 0.39
50 14 0.22
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.31
Consensus pattern (46 bp):
AAATAAGCTTATGAGCTTATGGAATAATGGCAAGTATATTGAAAAA
Found at i:6725394 original size:27 final size:27
Alignment explanation
Indices: 6725364--6725418 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
6725354 TAAAAGGAAC
* * *
6725364 GAAATTGAATTCGAAGTCGGATATAAA
1 GAAATTGAATTCAAAGTCAGAGATAAA
6725391 GAAATTGAATTCAAAGTCAGAGATAAA
1 GAAATTGAATTCAAAGTCAGAGATAAA
6725418 G
1 G
6725419 TTTTCCTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.47, C:0.07, G:0.22, T:0.24
Consensus pattern (27 bp):
GAAATTGAATTCAAAGTCAGAGATAAA
Found at i:6730362 original size:51 final size:51
Alignment explanation
Indices: 6730286--6730389 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 51
6730276 CCTAATTATT
* *
6730286 GTACTGTTGGTGAATAAAATTACATGGTTTGGGTTGATTATAGTCAATGTA
1 GTACTGTTGGTGAATAAAATTACATGGTTTGGGTTGATTAAAGTCAATATA
*
6730337 GTACTGTTGGTGGATAAAATTACATGGTTTGGGTTGATTAAAGTCAATATA
1 GTACTGTTGGTGAATAAAATTACATGGTTTGGGTTGATTAAAGTCAATATA
6730388 GT
1 GT
6730390 CTAATAGCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.30, C:0.06, G:0.26, T:0.38
Consensus pattern (51 bp):
GTACTGTTGGTGAATAAAATTACATGGTTTGGGTTGATTAAAGTCAATATA
Found at i:6740798 original size:33 final size:33
Alignment explanation
Indices: 6740761--6740825 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
6740751 TTGACACTTC
*
6740761 AATATTATGATTTGTTTATGGATTTTATTGTTT
1 AATATTATGATTTGTTTATAGATTTTATTGTTT
* *
6740794 AATATTATGGTTTGTTTATATATTTTATTGTT
1 AATATTATGATTTGTTTATAGATTTTATTGTT
6740826 CTAGAATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.62
Consensus pattern (33 bp):
AATATTATGATTTGTTTATAGATTTTATTGTTT
Found at i:6740885 original size:75 final size:74
Alignment explanation
Indices: 6740791--6741011 Score: 311
Period size: 75 Copynumber: 2.9 Consensus size: 74
6740781 GATTTTATTG
*
6740791 TTTAATATTATGGTTTGTTTATATATTTTATTGTTCTAGAATTAATATTGTGATTTGAATCTTAA
1 TTTAATATTATGGTTTGTTTATA-ATTTTATTGTTCTAGAATTAATATTGTGATTTGAGTCTTAA
6740856 GATTTGACAT
65 GATTTGACAT
* * *
6740866 TTTAATATTATGGTATGTTTATGGATTTTATTGTTCTA-AACTTAATATTGT-AGTTTGAGTTTT
1 TTTAATATTATGGTTTGTTTAT-AATTTTATTGTTCTAGAA-TTAATATTGTGA-TTTGAGTCTT
6740929 AAGATTTGACAT
63 AAGATTTGACAT
* * * *
6740941 TTTAATATTATGGTTTATTTATGAATTTTATTGTTCTAGACTTAATATTGTGGTTTGAGTCTTGA
1 TTTAATATTATGGTTTGTTTAT-AATTTTATTGTTCTAGAATTAATATTGTGATTTGAGTCTTAA
6741006 GATTTG
65 GATTTG
6741012 TTTATGGTTT
Statistics
Matches: 130, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
74 3 0.02
75 126 0.97
76 1 0.01
ACGTcount: A:0.27, C:0.04, G:0.16, T:0.53
Consensus pattern (74 bp):
TTTAATATTATGGTTTGTTTATAATTTTATTGTTCTAGAATTAATATTGTGATTTGAGTCTTAAG
ATTTGACAT
Found at i:6741326 original size:6 final size:6
Alignment explanation
Indices: 6741311--6741347 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
6741301 TTTCTTATCT
*
6741311 CCGTCA CCGTCC CCGTCC CCGTCC CCGTCC CCGTCC C
1 CCGTCC CCGTCC CCGTCC CCGTCC CCGTCC CCGTCC C
6741348 ATATCTATCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.03, C:0.65, G:0.16, T:0.16
Consensus pattern (6 bp):
CCGTCC
Found at i:6748962 original size:20 final size:19
Alignment explanation
Indices: 6748939--6748996 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
6748929 TGTAAAAATG
6748939 TAATTATTTAAAATAATCTT
1 TAATTATTTAAAATAAT-TT
*
6748959 TAATTTTTTAAAATGAATTT
1 TAATTATTTAAAAT-AATTT
* *
6748979 TATTTATTGAAAAATAAT
1 TAATTATT-TAAAATAAT
6748997 ATCTTTGTCC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 24 0.75
21 8 0.25
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (19 bp):
TAATTATTTAAAATAATTT
Found at i:6749042 original size:17 final size:17
Alignment explanation
Indices: 6749020--6749052 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6749010 CGAGACCACA
*
6749020 ATATTATGTTTTATATT
1 ATATTATATTTTATATT
6749037 ATATTATATTTTATAT
1 ATATTATATTTTATAT
6749053 AAATAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
ATATTATATTTTATATT
Found at i:6750962 original size:37 final size:38
Alignment explanation
Indices: 6750912--6750992 Score: 121
Period size: 38 Copynumber: 2.2 Consensus size: 38
6750902 TTTATTTTGT
*
6750912 TCGGGTCATG-TTTTTTAAGTGTCATATTCGGGTC-GAG
1 TCGGGTCAAGTTTTTTTAAGTGTCATATTCGGGTCAG-G
*
6750949 TCGGGTCAAGTTTTTTTAAGTGTGATATTCGGGTCAGG
1 TCGGGTCAAGTTTTTTTAAGTGTCATATTCGGGTCAGG
6750987 TCGGGT
1 TCGGGT
6750993 TCGGGTTTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
37 9 0.22
38 30 0.75
39 1 0.03
ACGTcount: A:0.16, C:0.12, G:0.32, T:0.40
Consensus pattern (38 bp):
TCGGGTCAAGTTTTTTTAAGTGTCATATTCGGGTCAGG
Found at i:6754236 original size:81 final size:81
Alignment explanation
Indices: 6754138--6754339 Score: 350
Period size: 81 Copynumber: 2.5 Consensus size: 81
6754128 AAACTATATA
* * *
6754138 TTGGATAAACTATATATAACATGTATTACTTCAATTTATTCCTTGAATGTACATAACCAGTTACT
1 TTGGATAAACTGTATATAACATGTATTGCTTCAATGTATTCCTTGAATGTACATAACCAGTTACT
6754203 ATAATTGGTTACTATG
66 ATAATTGGTTACTATG
* *
6754219 TTGGATAAACTGTATATAACATGTATTGCTTCAATGTATTTCTTGAATGTACATAATCAGTTACT
1 TTGGATAAACTGTATATAACATGTATTGCTTCAATGTATTCCTTGAATGTACATAACCAGTTACT
6754284 ATAATTGGTTACTATG
66 ATAATTGGTTACTATG
*
6754300 TTGGATAAAGTGTATATAACATGTATTGCTTCAATGTATT
1 TTGGATAAACTGTATATAACATGTATTGCTTCAATGTATT
6754340 GTTTGAAGGA
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 115 1.00
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (81 bp):
TTGGATAAACTGTATATAACATGTATTGCTTCAATGTATTCCTTGAATGTACATAACCAGTTACT
ATAATTGGTTACTATG
Found at i:6755572 original size:24 final size:24
Alignment explanation
Indices: 6755541--6755608 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
6755531 CGGAGACATC
*
6755541 AGAAATCAAAACTGAATTCAAATA
1 AGAAATCAAAACAGAATTCAAATA
* * * * *
6755565 AGATATCATAACAGAATCCAGATC
1 AGAAATCAAAACAGAATTCAAATA
*
6755589 ATAAATCAAAACAGAATTCA
1 AGAAATCAAAACAGAATTCA
6755609 GGTCATGTAT
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.54, C:0.16, G:0.09, T:0.21
Consensus pattern (24 bp):
AGAAATCAAAACAGAATTCAAATA
Found at i:6755614 original size:24 final size:24
Alignment explanation
Indices: 6755569--6755614 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
6755559 CAAATAAGAT
*
6755569 ATCATAACAGAATCCAGATCATAA
1 ATCAAAACAGAATCCAGATCATAA
* *
6755593 ATCAAAACAGAATTCAGGTCAT
1 ATCAAAACAGAATCCAGATCAT
6755615 GTATTAGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.48, C:0.20, G:0.11, T:0.22
Consensus pattern (24 bp):
ATCAAAACAGAATCCAGATCATAA
Found at i:6759580 original size:24 final size:24
Alignment explanation
Indices: 6759553--6759624 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
6759543 AAACGGAGAC
*
6759553 ATCAAAAATCAAAACAGAATTCAG
1 ATCAAAAATCAGAACAGAATTCAG
* * *
6759577 ATCATATATCAGAACAGAATCCAG
1 ATCAAAAATCAGAACAGAATTCAG
*
6759601 ATCAGAAATCAGAACAGAATTCAG
1 ATCAAAAATCAGAACAGAATTCAG
6759625 GTATTGTATC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.51, C:0.18, G:0.12, T:0.18
Consensus pattern (24 bp):
ATCAAAAATCAGAACAGAATTCAG
Found at i:6759624 original size:12 final size:12
Alignment explanation
Indices: 6759565--6759624 Score: 59
Period size: 12 Copynumber: 5.0 Consensus size: 12
6759555 CAAAAATCAA
6759565 AACAGAATTCAG
1 AACAGAATTCAG
* *
6759577 ATCA-TATATCAG
1 AACAGAAT-TCAG
*
6759589 AACAGAATCCAG
1 AACAGAATTCAG
* *
6759601 ATCAGAAATCAG
1 AACAGAATTCAG
6759613 AACAGAATTCAG
1 AACAGAATTCAG
6759625 GTATTGTATC
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
11 2 0.06
12 32 0.89
13 2 0.06
ACGTcount: A:0.48, C:0.18, G:0.15, T:0.18
Consensus pattern (12 bp):
AACAGAATTCAG
Found at i:6759659 original size:24 final size:25
Alignment explanation
Indices: 6759584--6759661 Score: 65
Period size: 24 Copynumber: 3.2 Consensus size: 25
6759574 CAGATCATAT
* *
6759584 ATCAGAACAGAA-TCCAG-ATCAGAA
1 ATCAGAACAGAATTCAAGTAT-GGAA
* * *
6759608 ATCAGAACAGAATTCAGGTATTG-T
1 ATCAGAACAGAATTCAAGTATGGAA
*
6759632 ATCAGAACATAATTCAAGT-TGGAA
1 ATCAGAACAGAATTCAAGTATGGAA
6759656 ATCAGA
1 ATCAGA
6759662 TAAAATATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
23 2 0.05
24 35 0.81
25 4 0.09
26 2 0.05
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.22
Consensus pattern (25 bp):
ATCAGAACAGAATTCAAGTATGGAA
Found at i:6764273 original size:39 final size:39
Alignment explanation
Indices: 6764223--6764307 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 39
6764213 TTAAAATTCC
* ** *
6764223 TAATTTCTTAAACCATTTCATTATAACATTCTAAATTAT
1 TAATTTTTTAAACCATTTCACCATAACAATCTAAATTAT
** *
6764262 TAATTTTTTAAATTATTTCACCGTAACAATCTAAATTAT
1 TAATTTTTTAAACCATTTCACCATAACAATCTAAATTAT
*
6764301 TTATTTT
1 TAATTTT
6764308 AACTTCAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.36, C:0.13, G:0.01, T:0.49
Consensus pattern (39 bp):
TAATTTTTTAAACCATTTCACCATAACAATCTAAATTAT
Found at i:6770587 original size:16 final size:16
Alignment explanation
Indices: 6770566--6770608 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
6770556 CAAAAGCCGC
*
6770566 CAGCCATGTCGGTAGT
1 CAGCCACGTCGGTAGT
6770582 CAGCCACGTCGGTAGT
1 CAGCCACGTCGGTAGT
6770598 CAGCCACGTCG
1 CAGCCACGTCG
6770609 ATAGCCATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (16 bp):
CAGCCACGTCGGTAGT
Found at i:6771330 original size:30 final size:30
Alignment explanation
Indices: 6771294--6771369 Score: 116
Period size: 30 Copynumber: 2.5 Consensus size: 30
6771284 TGGGTCAACT
6771294 CGTTGACTTTGACCAAGTCAACCAGTTGAC
1 CGTTGACTTTGACCAAGTCAACCAGTTGAC
** *
6771324 CGTTGACTTTGACGGAGTCAACCTGTTGAC
1 CGTTGACTTTGACCAAGTCAACCAGTTGAC
*
6771354 CGCTGACTTTGACCAA
1 CGTTGACTTTGACCAA
6771370 AAAGTTAACT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (30 bp):
CGTTGACTTTGACCAAGTCAACCAGTTGAC
Found at i:6787122 original size:252 final size:252
Alignment explanation
Indices: 6786670--6787169 Score: 898
Period size: 252 Copynumber: 2.0 Consensus size: 252
6786660 TATTCTTGTT
*
6786670 TCATTTTTATTCCAGGGGTATTTTAGTAACTTTACAAATTCATAGTATTTCAATCATTTTCTTAT
1 TCATTTGTATTCCAGGGGTATTTTAGTAACTTTACAAATTCATAGTATTTCAATCATTTTCTTAT
* *
6786735 GTCCCATCATATTATTTAATTCAAATATTTAGTATCTATTACAAGCTATTTTGGGGTTAGAACTC
66 GTCCCATCATATTATTTAATTCAAACATCTAGTATCTATTACAAGCTATTTTGGGGTTAGAACTC
6786800 GGTTATCTATATTTTCAAAGCAAAACTTCTATGCACTTCAGTAGTTCCATCTGATCAATATATAT
131 GGTTATCTATATTTTCAAAGCAAAACTTCTATGCACTTCAGTAGTTCCATCTGATCAATATATAT
*
6786865 TTTCAGAGTTATTATCCAACTTCCAAGACAATTCTT-TCCTTTTTACAACATAATTTC
196 TTTCAGAGTTATTATCCAACTTCCAAGACAATTCTTGT-ATTTTTACAACATAATTTC
*
6786922 TCATTTGTATTCCAGGGGTATTTTGGTAACTTTACAAATTCATAGTATTTCAATCATTTTCTT-T
1 TCATTTGTATTCCAGGGGTATTTTAGTAACTTTACAAATTCATAGTATTTCAATCATTTTCTTAT
6786986 CGTCCCATCATATTATTTAATTCAAACATCTAGTATCT-TGTACAAGCTATTTTGGGGTTAGAAC
66 -GTCCCATCATATTATTTAATTCAAACATCTAGTATCTAT-TACAAGCTATTTTGGGGTTAGAAC
*
6787050 TCGGTTATCTATATTTTCTAAGCAAAACTTCTATGCACTTCAGTAGTTCCATCTGATCAATATAT
129 TCGGTTATCTATATTTTCAAAGCAAAACTTCTATGCACTTCAGTAGTTCCATCTGATCAATATAT
6787115 ATTTTCAGAGTTATTATCCAACTTCCAAGACAATTCTTGTATTTTTACAACATAA
194 ATTTTCAGAGTTATTATCCAACTTCCAAGACAATTCTTGTATTTTTACAACATAA
6787170 AGGTATTTTC
Statistics
Matches: 239, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
251 2 0.01
252 236 0.99
253 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (252 bp):
TCATTTGTATTCCAGGGGTATTTTAGTAACTTTACAAATTCATAGTATTTCAATCATTTTCTTAT
GTCCCATCATATTATTTAATTCAAACATCTAGTATCTATTACAAGCTATTTTGGGGTTAGAACTC
GGTTATCTATATTTTCAAAGCAAAACTTCTATGCACTTCAGTAGTTCCATCTGATCAATATATAT
TTTCAGAGTTATTATCCAACTTCCAAGACAATTCTTGTATTTTTACAACATAATTTC
Found at i:6791747 original size:22 final size:22
Alignment explanation
Indices: 6791687--6791728 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
6791677 CGATCAATTG
*
6791687 CTCAGTCGGCTCGGTCACACGA
1 CTCAATCGGCTCGGTCACACGA
6791709 CTCAATCGGCTCGGTCACAC
1 CTCAATCGGCTCGGTCACAC
6791729 TGCTAGATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.38, G:0.24, T:0.19
Consensus pattern (22 bp):
CTCAATCGGCTCGGTCACACGA
Found at i:6793799 original size:89 final size:90
Alignment explanation
Indices: 6793647--6793825 Score: 256
Period size: 89 Copynumber: 2.0 Consensus size: 90
6793637 TCCGTAGGGC
* ** * * *
6793647 TTACCCTAAGAACACAGCAAAAGGGAGCCAACCTAAGGATATTCCTTGGGGCCTATAGGCCTACG
1 TTACCCTAAGAACACAACAAAAGAAAACCAACCTAAGGATATGCCTTGGGGCCTATAGGCCTACC
6793712 CAAG-GCTATCCTTAGG-TCTGTAAGG
66 CAAGTG-TATCCTTAGGTTC-GTAAGG
*
6793737 TTACCCTAAGAACACAAC-AAAGAAAACCAACCTAAGGATATGCCTTGGGGCCTATGGGCCTACC
1 TTACCCTAAGAACACAACAAAAGAAAACCAACCTAAGGATATGCCTTGGGGCCTATAGGCCTACC
6793801 CAAGTGTATCCTTAGGTTCGTAAGG
66 CAAGTGTATCCTTAGGTTCGTAAGG
6793826 ACTTACCAGC
Statistics
Matches: 80, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
89 60 0.75
90 20 0.25
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (90 bp):
TTACCCTAAGAACACAACAAAAGAAAACCAACCTAAGGATATGCCTTGGGGCCTATAGGCCTACC
CAAGTGTATCCTTAGGTTCGTAAGG
Found at i:6796259 original size:20 final size:20
Alignment explanation
Indices: 6796234--6796336 Score: 107
Period size: 20 Copynumber: 5.0 Consensus size: 20
6796224 CGTTAAACAA
*
6796234 GGGGGAATCGGTACCCCCTG
1 GGGGGAATCTGTACCCCCTG
* * *
6796254 GGGGGAATTTGTTCCCCTTG
1 GGGGGAATCTGTACCCCCTG
*
6796274 GGGGGAATCGGTACCCCCTAAG
1 GGGGGAATCTGTACCCCCT--G
* * **
6796296 GGGAGAATCTGTTCCCGTTG
1 GGGGGAATCTGTACCCCCTG
6796316 GGGGGAATCTGTACCCCCTG
1 GGGGGAATCTGTACCCCCTG
6796336 G
1 G
6796337 ACAATCTAAT
Statistics
Matches: 64, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
20 49 0.77
22 15 0.23
ACGTcount: A:0.16, C:0.25, G:0.37, T:0.22
Consensus pattern (20 bp):
GGGGGAATCTGTACCCCCTG
Found at i:6796322 original size:42 final size:40
Alignment explanation
Indices: 6796234--6796336 Score: 152
Period size: 42 Copynumber: 2.5 Consensus size: 40
6796224 CGTTAAACAA
* *
6796234 GGGGGAATCGGTACCCCCTGGGGGGAATTTGTTCCCCTTG
1 GGGGGAATCGGTACCCCCTGGGGAGAATCTGTTCCCCTTG
*
6796274 GGGGGAATCGGTACCCCCTAAGGGGAGAATCTGTTCCCGTTG
1 GGGGGAATCGGTACCCCCT--GGGGAGAATCTGTTCCCCTTG
*
6796316 GGGGGAATCTGTACCCCCTGG
1 GGGGGAATCGGTACCCCCTGG
6796337 ACAATCTAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
40 21 0.37
42 36 0.63
ACGTcount: A:0.16, C:0.25, G:0.37, T:0.22
Consensus pattern (40 bp):
GGGGGAATCGGTACCCCCTGGGGAGAATCTGTTCCCCTTG
Found at i:6798999 original size:25 final size:26
Alignment explanation
Indices: 6798971--6799025 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
6798961 ATTTTGTTGC
*
6798971 CTCTTCGAGATCAACTTCAATGAC-A
1 CTCTTCGAGATCAACCTCAATGACAA
6798996 CTCTTCGAGATCAACCTCAATGACAA
1 CTCTTCGAGATCAACCTCAATGACAA
6799022 CTCT
1 CTCT
6799026 ATTTGAACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 23 0.82
26 5 0.18
ACGTcount: A:0.31, C:0.31, G:0.11, T:0.27
Consensus pattern (26 bp):
CTCTTCGAGATCAACCTCAATGACAA
Found at i:6800014 original size:125 final size:126
Alignment explanation
Indices: 6799792--6800033 Score: 276
Period size: 125 Copynumber: 1.9 Consensus size: 126
6799782 CTCAAATTGA
* *
6799792 AAATATCGATACTTGGTCCGAAAGTCCCTATACCTTTTCGACAAAATGCTATGTCTGAAAATTGT
1 AAATATCGATAATTGGTCCGAAAGTCCCTATACCTTTTCGACAAAATGCTATATCTGAAAATTGT
* *
6799857 CCTAACAAAGTATCAATAAAGATAGTGTAAGTATC-AGTATTT-GAAATTTGAGGAAGGTTG
66 CCTAACAAAGTATCAATAAACATAGCGTAAGTATCGA-TATTTAGAAATTTGAGGAAGGTTG
* ** * * * *
6799917 AAATATCGATAATTGGT-CTAAGAGT-CCTAATAGTTTTTCGGCAGAATGTTATATCTTAAAATT
1 AAATATCGATAATTGGTCCGAA-AGTCCCT-ATACCTTTTCGACAAAATGCTATATCTGAAAATT
* * * * * *
6799980 GTTCTCACGAAGTATCGATACACATAGCGTAAGTATCGATATTTATAAATTTGA
64 GTCCTAACAAAGTATCAATAAACATAGCGTAAGTATCGATATTTAGAAATTTGA
6800034 AATAAAATAT
Statistics
Matches: 96, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
124 6 0.06
125 81 0.84
126 9 0.09
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (126 bp):
AAATATCGATAATTGGTCCGAAAGTCCCTATACCTTTTCGACAAAATGCTATATCTGAAAATTGT
CCTAACAAAGTATCAATAAACATAGCGTAAGTATCGATATTTAGAAATTTGAGGAAGGTTG
Found at i:6800171 original size:145 final size:144
Alignment explanation
Indices: 6799904--6800272 Score: 445
Period size: 145 Copynumber: 2.6 Consensus size: 144
6799894 TATTTGAAAT
* * * * * *
6799904 TTGA-GGAAGGTTGAAATATCGATAATTGGTCTAAGAGTC-CTAATAGTTTTTCGGCAGAATGTT
1 TTGATGGAAGGTTCAAATATCGATACTTGGTCTAAAAGTCTC-AATACTTTTTTGACAGAATGTT
* * * * * *
6799967 ATATCTTAAAATTGTTCTCACGAAGTATCGATACACATAGCGTAAGTATCGATATTTATAAATTT
65 ATGTCTAAAAATTGTCCTCACAAAGTATCGATACACATAGCGCAAATATCGATATTTATAAATTT
*
6800032 GAAATAAAATATGCAA
130 GAAACAAAATATGC-A
* * * *
6800048 TTGATGGAAGGTTCAAATATCGATACTTGGTCTAAAAGTCTCGATATTTTTTTGATAGAATGCTA
1 TTGATGGAAGGTTCAAATATCGATACTTGGTCTAAAAGTCTCAATACTTTTTTGACAGAATGTTA
* * * * *
6800113 TGTCTAAAAATTGTCCTGACAAATTATCGATACATATAGTGCAAATATCGATATTTATAATTTTG
66 TGTCTAAAAATTGTCCTCACAAAGTATCGATACACATAGCGCAAATATCGATATTTATAAATTTG
6800178 AAACAAAATATGCA
131 AAACAAAATATGCA
* * ** *
6800192 TTCGATGAAAGGTTCAAATATTGATACTTGGTCCGAAAGTTTCAATACTTTTTTGACAGAATGTT
1 TT-GATGGAAGGTTCAAATATCGATACTTGGTCTAAAAGTCTCAATACTTTTTTGACAGAATGTT
*
6800257 ATGTCTGAAAATTGTC
65 ATGTCTAAAAATTGTC
6800273 TTGAAAAAGT
Statistics
Matches: 191, Mismatches: 31, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
144 7 0.04
145 183 0.96
146 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36
Consensus pattern (144 bp):
TTGATGGAAGGTTCAAATATCGATACTTGGTCTAAAAGTCTCAATACTTTTTTGACAGAATGTTA
TGTCTAAAAATTGTCCTCACAAAGTATCGATACACATAGCGCAAATATCGATATTTATAAATTTG
AAACAAAATATGCA
Found at i:6801877 original size:125 final size:125
Alignment explanation
Indices: 6801639--6801870 Score: 279
Period size: 125 Copynumber: 1.9 Consensus size: 125
6801629 CTCAAATTGA
* * * *
6801639 AAATATCGATACTTGGTCCAAAAGTCCCTATACCTTTTCGACAAAATGCTATGTCTGAAAATTGT
1 AAATATCAATAATTGGTCCAAAAGTCCCTATACCTTTTCGACAAAATGCTATATCTGAAAATTAT
*
6801704 CCTAACAAAATATCGATAAACATAGTGTAAGTACCGATATTTGAAATTTGAGGAAGGTTG
66 CCTAACAAAATATCGATAAACATAGTATAAGTACCGATATTTGAAATTTGAGGAAGGTTG
* * * * * * *
6801764 AAATATCAATAATTGGTCTAAGAGT-CCTGATACTTTTTCGGCATAATGTTATATCTTAAAATTA
1 AAATATCAATAATTGGTCCAAAAGTCCCT-ATACCTTTTCGACAAAATGCTATATCTGAAAATTA
* * * * *
6801828 TTCTGACAAAGTATCGATACACATA-TCATAAGTATCGATATTT
65 TCCTAACAAAATATCGATAAACATAGT-ATAAGTACCGATATTT
6801871 ATAATTTTGA
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
124 4 0.05
125 84 0.95
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (125 bp):
AAATATCAATAATTGGTCCAAAAGTCCCTATACCTTTTCGACAAAATGCTATATCTGAAAATTAT
CCTAACAAAATATCGATAAACATAGTATAAGTACCGATATTTGAAATTTGAGGAAGGTTG
Found at i:6801993 original size:146 final size:146
Alignment explanation
Indices: 6801755--6802120 Score: 438
Period size: 146 Copynumber: 2.5 Consensus size: 146
6801745 TGAAATTTGA
* * * * * * * *
6801755 GGAAGGTTGAAATATCAATAATTGGTCTAAGAGTC-CTGAT-ACTTTTTCGGCATAATGTTATAT
1 GGAAGGTTCAAATATCGATACTTGGTCTAAAAGTCTC-GATAATTTTTTCGACAGAATGTTATGT
* * * *
6801818 CTTAAAATTATTCTGACAAAGTATCGATACACATA-T-CATAAGTATCGATATTTATAATTTTGA
65 CTGAAAATTGTCCCGACAAAGTATCGATACACATAGTGCA-AA-TATCGATATTTATAATTTTGA
* *
6801881 AATAAAATGTGCAGTT-GGT
128 AACAAAATATGCA-TTCGGT
* *
6801900 GGAAGGTTCAAATATCGATACTTGGTCTAAAAGTCTCGATAATTTTTTCGATAGAATATTATGTC
1 GGAAGGTTCAAATATCGATACTTGGTCTAAAAGTCTCGATAATTTTTTCGACAGAATGTTATGTC
* *
6801965 TGAAAATTGTCCCGACAAAGTATTGATACATATAGTGCAAATATCGATATTTATAATTTTGAAAC
66 TGAAAATTGTCCCGACAAAGTATCGATACACATAGTGCAAATATCGATATTTATAATTTTGAAAC
6802030 AAAATATGCATTCGGT
131 AAAATATGCATTCGGT
* * * * * *
6802046 GAAAGGTTCAAATATTGATACTTGGTCCAAATGTCTCGTTACTTTTTT-GACAGAATGTTATGTC
1 GGAAGGTTCAAATATCGATACTTGGTCTAAAAGTCTCGATAATTTTTTCGACAGAATGTTATGTC
6802110 TGAAAATTGTC
66 TGAAAATTGTC
6802121 TTGAGAAAGT
Statistics
Matches: 190, Mismatches: 26, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
145 61 0.32
146 124 0.65
147 3 0.02
148 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (146 bp):
GGAAGGTTCAAATATCGATACTTGGTCTAAAAGTCTCGATAATTTTTTCGACAGAATGTTATGTC
TGAAAATTGTCCCGACAAAGTATCGATACACATAGTGCAAATATCGATATTTATAATTTTGAAAC
AAAATATGCATTCGGT
Found at i:6802360 original size:3 final size:3
Alignment explanation
Indices: 6802352--6802448 Score: 164
Period size: 3 Copynumber: 33.3 Consensus size: 3
6802342 TTATCAGACC
6802352 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
6802398 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
6802445 TTA T
1 TTA T
6802449 AAACAAATAC
Statistics
Matches: 89, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
2 6 0.07
3 83 0.93
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:6802507 original size:17 final size:17
Alignment explanation
Indices: 6802464--6802515 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
6802454 AATACAATAG
*
6802464 AAACTCTTTAAATTAAT
1 AAACTCTCTAAATTAAT
**
6802481 --ACTCGGTAAATTAAT
1 AAACTCTCTAAATTAAT
*
6802496 AAACTCTCTAAAATAAT
1 AAACTCTCTAAATTAAT
6802513 AAA
1 AAA
6802516 TTTGTCCGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 13 0.46
17 15 0.54
ACGTcount: A:0.50, C:0.13, G:0.04, T:0.33
Consensus pattern (17 bp):
AAACTCTCTAAATTAAT
Found at i:6805963 original size:137 final size:137
Alignment explanation
Indices: 6805717--6805990 Score: 548
Period size: 137 Copynumber: 2.0 Consensus size: 137
6805707 ACCATGCCAT
6805717 TTGAGCTTATGTGCAAAGCGAGCGACTACGCTATGGGAGCAGTCCTTGGACAACGTCAAGGTAAA
1 TTGAGCTTATGTGCAAAGCGAGCGACTACGCTATGGGAGCAGTCCTTGGACAACGTCAAGGTAAA
6805782 ATTTTCCAAGATATTTACTATGCTAGTCGTACTTTAAATGATGAACAAATCAACTACACTACCAA
66 ATTTTCCAAGATATTTACTATGCTAGTCGTACTTTAAATGATGAACAAATCAACTACACTACCAA
6805847 TGAGAAA
131 TGAGAAA
6805854 TTGAGCTTATGTGCAAAGCGAGCGACTACGCTATGGGAGCAGTCCTTGGACAACGTCAAGGTAAA
1 TTGAGCTTATGTGCAAAGCGAGCGACTACGCTATGGGAGCAGTCCTTGGACAACGTCAAGGTAAA
6805919 ATTTTCCAAGATATTTACTATGCTAGTCGTACTTTAAATGATGAACAAATCAACTACACTACCAA
66 ATTTTCCAAGATATTTACTATGCTAGTCGTACTTTAAATGATGAACAAATCAACTACACTACCAA
6805984 TGAGAAA
131 TGAGAAA
6805991 GAATTGCTAG
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
137 137 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (137 bp):
TTGAGCTTATGTGCAAAGCGAGCGACTACGCTATGGGAGCAGTCCTTGGACAACGTCAAGGTAAA
ATTTTCCAAGATATTTACTATGCTAGTCGTACTTTAAATGATGAACAAATCAACTACACTACCAA
TGAGAAA
Found at i:6807634 original size:15 final size:15
Alignment explanation
Indices: 6807605--6807634 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
6807595 TAGATAAATA
6807605 AATATTTTTATTTTT
1 AATATTTTTATTTTT
6807620 AATATATTTTATTTT
1 AATAT-TTTTATTTT
6807635 GTCTTTTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
AATATTTTTATTTTT
Found at i:6809248 original size:181 final size:181
Alignment explanation
Indices: 6808894--6809366 Score: 644
Period size: 181 Copynumber: 2.6 Consensus size: 181
6808884 GATCCAAATT
* * * * **
6808894 AAAAATGTGTCGATCCAAAACGATATAACATGTAAAACTATGACAAAACCGGTATTGAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * * *
6808959 AAACCGGTAAAGC-ACTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTT
66 AAACCGGTAAAACGA-TACC-GATATATTGAAAGTGTCGATACTTTAATATAAGGATCAACACTT
* * *
6809023 CGTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTTA
129 CGTAAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
* * *
6809076 AAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATAATAAAACCGGTAACAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * *
6809141 AAACCGGTAAAACGTTACCAGATATATTGAAAGTGTAGATACTTT-ATATAAGGATCAACACTTT
66 AAACCGGTAAAACGATACC-GATATATTGAAAGTGTCGATACTTTAATATAAGGATCAACACTTC
** *
6809205 GTAAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTGTCGATACTTTAA
130 GTAAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
* * *
6809257 AAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACAGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* *
6809322 AAACTGGTAAAATGATACCGAATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAACGATACCG-ATATATTGAAAGTGTCGATACTTT
6809367 CGTAAGTACG
Statistics
Matches: 255, Mismatches: 34, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
180 1 0.00
181 161 0.63
182 93 0.36
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.27
Consensus pattern (181 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
AAACCGGTAAAACGATACCGATATATTGAAAGTGTCGATACTTTAATATAAGGATCAACACTTCG
TAAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
Found at i:6809306 original size:20 final size:19
Alignment explanation
Indices: 6809278--6809333 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
6809268 GATCCACAAC
*
6809278 GATATAACAGGTAAAAATAT
1 GATAAAACAGGTAAAAA-AT
*
6809298 GATAAAACAGGTATCAAAAT
1 GATAAAACAGGTA-AAAAAT
*
6809318 GATAAAACTGGTAAAA
1 GATAAAACAGGTAAAA
6809334 TGATACCGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
19 2 0.06
20 26 0.84
21 3 0.10
ACGTcount: A:0.55, C:0.07, G:0.16, T:0.21
Consensus pattern (19 bp):
GATAAAACAGGTAAAAAAT
Found at i:6811574 original size:21 final size:21
Alignment explanation
Indices: 6811548--6811612 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
6811538 AAGACAATCA
*
6811548 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
6811569 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
6811590 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
6811611 AG
1 AG
6811613 GCATTAGGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.42, C:0.11, G:0.31, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:6812886 original size:4 final size:4
Alignment explanation
Indices: 6812877--6812913 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
6812867 TAAGAGATTG
6812877 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G
6812914 AAAGGACATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (4 bp):
GTAT
Found at i:6813517 original size:19 final size:19
Alignment explanation
Indices: 6813493--6813541 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
6813483 AATTTAGAGT
6813493 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
6813512 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
6813531 TAATTTTGTAT
1 TAATTTTGTAT
6813542 GTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:6813997 original size:200 final size:200
Alignment explanation
Indices: 6813654--6814417 Score: 1307
Period size: 200 Copynumber: 3.8 Consensus size: 200
6813644 AATTTACAAT
*
6813654 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
6813719 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTGCAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
6813784 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTACTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
6813849 AATGA
196 AATGA
*
6813854 ATGGCAAACAGGCTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
6813919 CAAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* *
6813984 ATGAGAGAATAGGTCTAAATAATGTGTCAACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
6814049 AATGA
196 AATGA
*
6814054 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGAGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
6814119 CGAAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATATCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* * *
6814184 ATGAGATAATAGGTCTAAATAATGTGTCGACACTTTTTTTAGTTTGTGTCGATATTTTTGGTCCA
131 ATGAGAGAATAGGTCTAAATAATGTATCGACAC-TTTTGTAGTTTGTGTCGATATTTTTGGTCCA
6814249 GAATGA
195 GAATGA
* *
6814255 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATAT-AAAAGTTTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
6814319 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* *
6814384 ATGAGAGAATTGGTATATAAT-ATGTATCGACACT
131 ATGAGAGAATAGGTCTA-AATAATGTATCGACACT
6814418 GTTTAATGTT
Statistics
Matches: 534, Mismatches: 28, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
199 1 0.00
200 454 0.85
201 79 0.15
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGA
Found at i:6815920 original size:6 final size:6
Alignment explanation
Indices: 6815909--6815996 Score: 95
Period size: 6 Copynumber: 14.7 Consensus size: 6
6815899 CAAGCGGTCA
* * * * *
6815909 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGAAG ATGACG ATGATG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* * * *
6815957 ATGACG ATGAAG CTGACG ATGAAG ATGACG ATGAAG ATGA
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGA
6815997 TGACGATGAT
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 66 1.00
ACGTcount: A:0.40, C:0.09, G:0.33, T:0.18
Consensus pattern (6 bp):
ATGAAG
Found at i:6816011 original size:6 final size:6
Alignment explanation
Indices: 6815926--6816024 Score: 81
Period size: 6 Copynumber: 16.5 Consensus size: 6
6815916 TGAAGCTGAC
* * * * * * * *
6815926 GATGAA GATGAC GATGAA GATGAC GATGAT GATGAC GATGAA GCTGAC
1 GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT
* * * * *
6815974 GATGAA GATGAC GATGAA GATGAT GACGAT GATAAT GATGAT GATGAT
1 GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT
6816022 GAT
1 GAT
6816025 CCAAGCAAGT
Statistics
Matches: 76, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 76 1.00
ACGTcount: A:0.38, C:0.07, G:0.32, T:0.22
Consensus pattern (6 bp):
GATGAT
Found at i:6816011 original size:12 final size:12
Alignment explanation
Indices: 6815909--6815996 Score: 140
Period size: 12 Copynumber: 7.3 Consensus size: 12
6815899 CAAGCGGTCA
*
6815909 ATGAAGATGAAG
1 ATGACGATGAAG
*
6815921 CTGACGATGAAG
1 ATGACGATGAAG
6815933 ATGACGATGAAG
1 ATGACGATGAAG
*
6815945 ATGACGATGATG
1 ATGACGATGAAG
6815957 ATGACGATGAAG
1 ATGACGATGAAG
*
6815969 CTGACGATGAAG
1 ATGACGATGAAG
6815981 ATGACGATGAAG
1 ATGACGATGAAG
6815993 ATGA
1 ATGA
6815997 TGACGATGAT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 69 1.00
ACGTcount: A:0.40, C:0.09, G:0.33, T:0.18
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:6816013 original size:24 final size:24
Alignment explanation
Indices: 6815909--6816020 Score: 134
Period size: 24 Copynumber: 4.7 Consensus size: 24
6815899 CAAGCGGTCA
* * *
6815909 ATGAAGATGAAGCTGACGATGAAG
1 ATGACGATGAAGATGACGATGATG
6815933 ATGACGATGAAGATGACGATGATG
1 ATGACGATGAAGATGACGATGATG
* *
6815957 ATGACGATGAAGCTGACGATGAAG
1 ATGACGATGAAGATGACGATGATG
* *
6815981 ATGACGATGAAGATGATGACGATG
1 ATGACGATGAAGATGACGATGATG
* * *
6816005 ATAATGATGATGATGA
1 ATGACGATGAAGATGA
6816021 TGATCCAAGC
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 76 1.00
ACGTcount: A:0.39, C:0.08, G:0.32, T:0.21
Consensus pattern (24 bp):
ATGACGATGAAGATGACGATGATG
Found at i:6816021 original size:15 final size:16
Alignment explanation
Indices: 6815932--6816021 Score: 64
Period size: 15 Copynumber: 5.8 Consensus size: 16
6815922 TGACGATGAA
6815932 GATGACGATGA-AGAT
1 GATGACGATGATAGAT
* * *
6815947 GACGATGATGAT-GAC
1 GATGACGATGATAGAT
* *
6815962 GATGAAGCTGACGAT-GAA
1 GATG-A-C-GATGATAGAT
6815980 GATGACGATGA-AGAT
1 GATGACGATGATAGAT
6815995 GATGACGATGATA-AT
1 GATGACGATGATAGAT
*
6816010 GATGATGATGAT
1 GATGACGATGAT
6816022 GATCCAAGCA
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
15 44 0.75
16 3 0.05
17 1 0.02
18 11 0.19
ACGTcount: A:0.38, C:0.08, G:0.32, T:0.22
Consensus pattern (16 bp):
GATGACGATGATAGAT
Found at i:6817583 original size:183 final size:183
Alignment explanation
Indices: 6817235--6818169 Score: 1680
Period size: 183 Copynumber: 5.1 Consensus size: 183
6817225 CAAAGTTTTC
* *
6817235 ACACTTTTTAATATTGTGTCTGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCATT-
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACC-TTG
* *
6817299 TCAAAAAGTGTCG--ATTGAAAAAACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTA
65 TCAAAAAGTGTCGACATT---TACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTA
6817362 ATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
127 ATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
6817419 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
* *
6817484 CAAAAAGTGTCGACATTTATACATCAGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
6817549 AACCGGTATAAATATACTGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
6817602 ACACTTTTTAATATTGTGACGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
6817667 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
6817732 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
6817785 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
* * *
6817850 CAAAAAGTGTCGACATTTACACATCGGAACCCAGGATTATAATGTAATATATAATTTTTTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
* *
6817915 AAGCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAATCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
6817968 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
6818033 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
6818098 AACCGGTATAAATATACCGATTTTATGAGCGAATAGGTCTACAACC-ATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
6818150 ACACTTTTTAATATTGTGTC
1 ACACTTTTTAATATTGTGTC
6818170 TGTAATTTTA
Statistics
Matches: 726, Mismatches: 22, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
182 26 0.04
183 625 0.86
184 72 0.10
186 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (183 bp):
ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCTTGT
CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:6819488 original size:22 final size:22
Alignment explanation
Indices: 6819444--6819488 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
6819434 ATTACATAAC
*
6819444 TTTAAAAAAAGTATCGATCCTT
1 TTTAAAAAAAGTATCGAACCTT
*
6819466 TTTATAAAAAGTAT-GAACACTT
1 TTTAAAAAAAGTATCGAAC-CTT
6819488 T
1 T
6819489 CAATATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (22 bp):
TTTAAAAAAAGTATCGAACCTT
Found at i:6819537 original size:23 final size:23
Alignment explanation
Indices: 6819506--6819578 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
6819496 ATAGGTAAAA
*
6819506 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
6819529 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
6819552 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
6819575 ATAT
1 ATAT
6819579 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:6820006 original size:20 final size:22
Alignment explanation
Indices: 6819981--6820056 Score: 66
Period size: 23 Copynumber: 3.5 Consensus size: 22
6819971 ACTTTCAATA
*
6819981 TAATAGGTA-AA-AATATGATG
1 TAATAGGTAGAACAATATAATG
*
6820001 TAATAGGTAGAACTTATATAATG
1 TAATAGGTAGAAC-AATATAATG
****
6820024 TAATAGGTAGCGTTTATATAATG
1 TAATAGGTAG-AACAATATAATG
6820047 TAATAGGTAG
1 TAATAGGTAG
6820057 TGCTTATATT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
20 9 0.19
21 2 0.04
23 36 0.77
ACGTcount: A:0.42, C:0.03, G:0.21, T:0.34
Consensus pattern (22 bp):
TAATAGGTAGAACAATATAATG
Found at i:6820024 original size:23 final size:23
Alignment explanation
Indices: 6819993--6820065 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
6819983 ATAGGTAAAA
* *
6819993 ATATGATGTAATAGGTAGAACTT
1 ATATAATGTAATAGGTAGAGCTT
* *
6820016 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGAGCTT
*
6820039 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGAGCTT
6820062 ATAT
1 ATAT
6820066 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.37, C:0.04, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGAGCTT
Found at i:6820090 original size:487 final size:489
Alignment explanation
Indices: 6819160--6820467 Score: 2417
Period size: 487 Copynumber: 2.7 Consensus size: 489
6819150 AGGTATGTAC
6819160 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
6819225 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATA
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
6819290 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
6819355 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* *
6819420 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGAACA
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACA
**
6819485 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGT
326 CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGAACTTATATAATGTAATAGGTAGCGT
*
6819550 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATA
391 TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATA
*
6819615 CTTTTTTCACTGTGGAAAACATTAATTTAAAGTT
456 CTTATTTCACTGTGGAAAACATTAATTTAAAGTT
6819649 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
6819714 GTTAC-G-ATATA-TATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
6819776 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
6819841 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAA
6819906 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGAC
260 AAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGAC
6819971 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGAACTTATATAATGTAATAGGTAGCG
325 ACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGAACTTATATAATGTAATAGGTAGCG
6820036 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCAT
390 TTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCAT
*
6820101 ACTTATTTCACTGTGGAAAACATTAATTTAAGGTT
455 ACTTATTTCACTGTGGAAAACATTAATTTAAAGTT
* * ** *
6820136 ATCTTTTGAGTGAGTTTTAAGATATCAATTTAGTAATTATATGTATCTAATGATTTATTTTTTAT
1 ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
*
6820201 GTTACGGTATATATTATCATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
66 GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
6820266 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
131 TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
6820331 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAA
196 ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
* * *
6820395 AAATTGAAACATAAATTACATAACTTTAAAAAAGGTATCGATCTTTTTTATAAAAAAGTATAGAC
261 AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTAT-AAAAAGTATGGAC
6820460 ACTTTCAA
325 ACTTTCAA
6820468 CATATTATAA
Statistics
Matches: 797, Mismatches: 17, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
486 176 0.22
487 296 0.37
488 54 0.07
489 95 0.12
490 176 0.22
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.40
Consensus pattern (489 bp):
ATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTAC
GTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATC
TTTGGTTAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATA
ATTTTTTGTGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAA
AAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACA
CTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGAACTTATATAATGTAATAGGTAGCGT
TTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATA
CTTATTTCACTGTGGAAAACATTAATTTAAAGTT
Found at i:6822889 original size:6 final size:6
Alignment explanation
Indices: 6822878--6822912 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
6822868 AAGTAAACTA
* *
6822878 ATAAAC ATAAAC ATAAAC ATAAAG ATAAAG ATAAA
1 ATAAAC ATAAAC ATAAAC ATAAAC ATAAAC ATAAA
6822913 TCACCTCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.17
Consensus pattern (6 bp):
ATAAAC
Found at i:6822943 original size:17 final size:17
Alignment explanation
Indices: 6822920--6822959 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
6822910 AAATCACCTC
*
6822920 TTTTTTGT-TTTTTTCT
1 TTTTTTGTGTTTTTGCT
6822936 TCTTTTTGTGTTTTTGCT
1 T-TTTTTGTGTTTTTGCT
6822954 TTTTTT
1 TTTTTT
6822960 CCTTCTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 12 0.57
18 8 0.38
ACGTcount: A:0.00, C:0.07, G:0.10, T:0.82
Consensus pattern (17 bp):
TTTTTTGTGTTTTTGCT
Found at i:6824039 original size:7 final size:7
Alignment explanation
Indices: 6824027--6824054 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
6824017 AAGTAGGGTG
6824027 TTTAAAA
1 TTTAAAA
6824034 TTTAAAA
1 TTTAAAA
6824041 TTTAAAA
1 TTTAAAA
6824048 TTTAAAA
1 TTTAAAA
6824055 AGAAGTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TTTAAAA
Found at i:6824431 original size:21 final size:21
Alignment explanation
Indices: 6824407--6824452 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
6824397 AATAAAAATT
* *
6824407 AATAAAAATTAAATGAATTAA
1 AATAAAAATGAAATGAAATAA
* *
6824428 AATAAAACTGAATTGAAATAA
1 AATAAAAATGAAATGAAATAA
6824449 AATA
1 AATA
6824453 TAATTTACTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (21 bp):
AATAAAAATGAAATGAAATAA
Found at i:6824439 original size:16 final size:15
Alignment explanation
Indices: 6824394--6824451 Score: 62
Period size: 16 Copynumber: 3.7 Consensus size: 15
6824384 AACTACCTAA
*
6824394 TAAAATAAAAATTAAT
1 TAAAAT-AAAATGAAT
* *
6824410 AAAAATTAAATGAAT
1 TAAAATAAAATGAAT
6824425 TAAAATAAAACTGAAT
1 TAAAATAAAA-TGAAT
*
6824441 TGAAATAAAAT
1 TAAAATAAAAT
6824452 ATAATTTACT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
15 16 0.46
16 19 0.54
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.28
Consensus pattern (15 bp):
TAAAATAAAATGAAT
Done.