Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008620.1 Hibiscus syriacus cultivar Beakdansim tig00111582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13158977
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 64
Found at i:6827462 original size:73 final size:74
Alignment explanation
Indices: 6827377--6827525 Score: 228
Period size: 73 Copynumber: 2.0 Consensus size: 74
6827367 AATAAAGAAA
* *
6827377 TAAATCCTAATTAAAATACTTACAACTATTTAAACTAAAATACCTAAAACAAAGATAAGA-TAAA
1 TAAATCCCAATTAAAATACTTAAAACTATTTAAACTAAAATACCTAAAACAAAGATAAGATTAAA
*
6827441 ATATTATCC
66 ATAATATCC
* * *
6827450 TAAATCCCAATTAAAATACTTAAAACTATTTAAACTAAAATTCCTAAAACAAATATAATATTTAA
1 TAAATCCCAATTAAAATACTTAAAACTATTTAAACTAAAATACCTAAAACAAAGATAAGA-TTAA
6827515 AATAATATCC
65 AATAATATCC
6827525 T
1 T
6827526 GAAACATGAG
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
73 55 0.81
75 13 0.19
ACGTcount: A:0.53, C:0.15, G:0.01, T:0.31
Consensus pattern (74 bp):
TAAATCCCAATTAAAATACTTAAAACTATTTAAACTAAAATACCTAAAACAAAGATAAGATTAAA
ATAATATCC
Found at i:6829921 original size:6 final size:6
Alignment explanation
Indices: 6829843--6829897 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
6829833 AAAATCAAAG
* * *
6829843 AAAAAT AAAAAC AAAAAT AAATCAA- AAAAAT AAAATT GAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAA--AAT AAAAAT AAAAAT AAAAAT AAAAAT
6829892 AAAAAT
1 AAAAAT
6829898 TAAACAAACG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
5 2 0.05
6 33 0.82
7 3 0.08
8 2 0.05
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:6830898 original size:2 final size:2
Alignment explanation
Indices: 6830891--6830924 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
6830881 AATGAAATCA
6830891 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6830925 CATTATTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6831079 original size:54 final size:54
Alignment explanation
Indices: 6831004--6831485 Score: 723
Period size: 54 Copynumber: 8.9 Consensus size: 54
6830994 TAGTACCCAT
* * * *
6831004 ACGGATATTCACCCACATAGGATCAATTCCGTGAAATGCACATTTAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* * *
6831058 ACGGTTATTCGTCTACGTAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* *
6831112 ACGGTTATTCATCCACATAGGATGAATTTCGTGAAACGCACACTTAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* *
6831166 ACAGG-TATTCATCCCCATAGGATAAATTCCGTGAAATGCACACTTAGTGCCGAA
1 AC-GGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
** * * *
6831220 AATGTTATTCATCCATATAGGATGAATTCCATTAAATGCACACTTAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* *
6831274 ACAGTTATTCATCCACATAGGATGAATTCAGTGAAATGCACACTTAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* *
6831328 ACGGTTATTCATCCACATAGGATGAATTCTGTGAAATGCACACTTAGTGCCAAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* **
6831382 ACAGTTATTCATCCACATAGGATGAATTCTATGAAATGCACACTTAGTGCCGAA
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
* *
6831436 ATGGTTATTCATCCACATTGGATGAATTCCGTGAAATGCACACTTAGTGC
1 ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGC
6831486 ATATTTGGTA
Statistics
Matches: 386, Mismatches: 40, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
53 1 0.00
54 383 0.99
55 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (54 bp):
ACGGTTATTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAA
Found at i:6832050 original size:20 final size:20
Alignment explanation
Indices: 6832013--6832050 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
6832003 TATATACCTT
6832013 CCCTTCGGTATCGATACTCC
1 CCCTTCGGTATCGATACTCC
6832033 CCCTTCGGTATCGATACT
1 CCCTTCGGTATCGATACT
6832051 GATTGAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.37, G:0.16, T:0.32
Consensus pattern (20 bp):
CCCTTCGGTATCGATACTCC
Found at i:6837743 original size:22 final size:22
Alignment explanation
Indices: 6837699--6837748 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
6837689 TGTTTCGTTT
* *
6837699 ATAAAACATTTAATTCACTTAAA
1 ATAAAACATATAATTAACTT-AA
6837722 ATAAAACATAT-ATTAACTTAA
1 ATAAAACATATAATTAACTTAA
6837743 ATAAAA
1 ATAAAA
6837749 TAACAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 8 0.32
22 7 0.28
23 10 0.40
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.32
Consensus pattern (22 bp):
ATAAAACATATAATTAACTTAA
Found at i:6838015 original size:2 final size:2
Alignment explanation
Indices: 6838008--6838063 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
6837998 AATGAAATCA
6838008 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6838050 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
6838064 CACTATTCTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6838508 original size:25 final size:25
Alignment explanation
Indices: 6838427--6838508 Score: 58
Period size: 27 Copynumber: 3.1 Consensus size: 25
6838417 TTATTCATCT
6838427 ACATAGGATGAATTCCGTGAAATGC
1 ACATAGGATGAATTCCGTGAAATGC
* * * * * *
6838452 ACACTTAGTGCTGAA-ACGGTTATTCATCC
1 ACA--TAG-GATGAATTCCGTGA--AATGC
6838481 ACATAGGATGAATTCCGTGAAATGC
1 ACATAGGATGAATTCCGTGAAATGC
6838506 ACA
1 ACA
6838509 CTTAGTGTCG
Statistics
Matches: 39, Mismatches: 12, Indels: 12
0.62 0.19 0.19
Matches are distributed among these distances:
25 9 0.23
26 5 0.13
27 14 0.36
28 5 0.13
29 6 0.15
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (25 bp):
ACATAGGATGAATTCCGTGAAATGC
Found at i:6838625 original size:54 final size:54
Alignment explanation
Indices: 6838179--6838624 Score: 649
Period size: 54 Copynumber: 8.3 Consensus size: 54
6838169 TTTCGTGTTT
* * *
6838179 TGCACACATAGTGTCAAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* *
6838233 TGCACACTTAGTGCCGAAAGGGTTATTCATCCACATAGGATGAATTCTGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* * * * **
6838287 TGTACACTTAGTGTCGAAAAGGATATTCATCCACATAGGATGAATTTTGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* * * *
6838341 TACACACTTAGTGCCGAAACGGGTAATCATCCCCATAGGATGAATTCCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
*
6838395 TGCACACTTAGTGCCGAAACGGTTATTCATCTACATAGGATGAATTCCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
*
6838449 TGCACACTTAGTGCTGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* *
6838503 TGCACACTTAGTGTCGAAATGGTTATTCATCCACATAGGATGAATTCCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
** * * * *
6838557 AACACACTTAGTGCGGAAACGATTATTCATCCATATATGATGAATTCCGTGAAA
1 TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
* *
6838611 TGTACACTTTGTGC
1 TGCACACTTAGTGC
6838625 GTATTTGGTA
Statistics
Matches: 351, Mismatches: 41, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 351 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (54 bp):
TGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGGATGAATTCCGTGAAA
Found at i:6840307 original size:105 final size:103
Alignment explanation
Indices: 6840018--6840361 Score: 381
Period size: 104 Copynumber: 3.3 Consensus size: 103
6840008 CAACATTTTT
* * * *
6840018 AGAAGAGTTCATAATGAAAAGAACTCACCCCAAGGAAAAAGTTCGTAATGAGAAGAACTTATTTA
1 AGAAGAGTTCATAATGAGAAGAACTCGCCCCAAGGAGAAAGTTCATAATGAGAAGAAC----TT-
* * *
6840083 ATTCATTTC-GAGTCCATCGCA-AAAGGAGGTGGGTCAACATTTCC
61 ATCCCTTTCAGA-TCCATCGCAGAAA-GAGGTGGGTCGA-ATTTCC
* * *
6840127 AGAAGAGTTCTTAATGAGAAGAACTCGTCCCGAA-GAGAAAGTTCATAATGAGAATAACTTATCC
1 AGAAGAGTTCATAATGAGAAGAACTCG-CCCCAAGGAGAAAGTTCATAATGAGAAGAACTTATCC
* * * *
6840191 CTTTCAAATCCATTGCAGAATGAGGTGGGTCGATGTTTCC
65 CTTTCAGATCCATCGCAGAAAGAGGTGGGTCGA-ATTTCC
* *
6840231 AGAAGTGTTCATAATGAGAATAACTCGCCCCAAAGGAGAAAGTTCATAATGAGAAGAACTTATCC
1 AGAAGAGTTCATAATGAGAAGAACTCGCCCC-AAGGAGAAAGTTCATAATGAGAAGAACTTATCC
*
6840296 CTTTCAGATCCATCGCAGAAAGAGGTGGATCGACA-TTCC
65 CTTTCAGATCCATCGCAGAAAGAGGTGGGTCGA-ATTTCC
* *
6840335 TGAAGAGTTCATATTGAGAAGAACTCG
1 AGAAGAGTTCATAATGAGAAGAACTCG
6840362 TCCTAAGAAG
Statistics
Matches: 200, Mismatches: 30, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
103 3 0.01
104 84 0.42
105 63 0.31
109 45 0.22
110 5 0.03
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (103 bp):
AGAAGAGTTCATAATGAGAAGAACTCGCCCCAAGGAGAAAGTTCATAATGAGAAGAACTTATCCC
TTTCAGATCCATCGCAGAAAGAGGTGGGTCGAATTTCC
Found at i:6840610 original size:3 final size:3
Alignment explanation
Indices: 6840597--6840685 Score: 56
Period size: 3 Copynumber: 28.7 Consensus size: 3
6840587 ATTGTTTTAC
** * *
6840597 TAT TA- TAT TAT TAT TGC TAT TAACT TTAT TAT TAT GTAA TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT T-A-T T-AT TAT TAT -TAT TAT TAT TAT
* * *
6840645 TAT TAC TAT TA- TAT TAT TAT TACT TAC TAT TAA TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TA
6840686 CTGTCATTGA
Statistics
Matches: 65, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
2 4 0.06
3 50 0.77
4 8 0.12
5 3 0.05
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (3 bp):
TAT
Found at i:6840676 original size:36 final size:36
Alignment explanation
Indices: 6840605--6840687 Score: 98
Period size: 36 Copynumber: 2.3 Consensus size: 36
6840595 ACTATTATAT
* *
6840605 TATTATTGCTATTAACTTTATTATTATGTAATATTAC
1 TATTATTACTATTAAC-TTATTATTATGTAATATTAA
*
6840642 TATTATTACTATTATA-TTATTATTACT-TACTATTAA
1 TATTATTACTATTA-ACTTATTATTA-TGTAATATTAA
6840678 TATTATTACT
1 TATTATTACT
6840688 GTCATTGATA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
36 26 0.63
37 14 0.34
38 1 0.02
ACGTcount: A:0.34, C:0.08, G:0.02, T:0.55
Consensus pattern (36 bp):
TATTATTACTATTAACTTATTATTATGTAATATTAA
Found at i:6840746 original size:20 final size:19
Alignment explanation
Indices: 6840721--6840785 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 19
6840711 TACCATACTG
*
6840721 TTATTAGTTATCATTTATTA
1 TTATTA-TTATCATTTAATA
*
6840741 TTATTAATTAT--TGTTACTA
1 TTATT-ATTATCAT-TTAATA
*
6840760 TTATTATTAACATTATAATA
1 TTATTATTATCATT-TAATA
6840780 TTATTA
1 TTATTA
6840786 CCATTATCAC
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
18 5 0.14
19 11 0.30
20 20 0.54
21 1 0.03
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (19 bp):
TTATTATTATCATTTAATA
Found at i:6840935 original size:2 final size:2
Alignment explanation
Indices: 6840928--6840961 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
6840918 TGTCCAAGCA
6840928 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6840962 TACAGTTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6841454 original size:2 final size:2
Alignment explanation
Indices: 6841447--6841504 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
6841437 GTGTATATGC
6841447 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6841489 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
6841505 GCATTTAAAC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6843420 original size:20 final size:19
Alignment explanation
Indices: 6843383--6843421 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
6843373 CTCAAAATCA
* *
6843383 TTTTTCAAAATTTCATTTT
1 TTTTTCAAAATCTAATTTT
6843402 TTTTTCCAAAATCTAATTTT
1 TTTTT-CAAAATCTAATTTT
6843422 ACTTTTAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTTCAAAATCTAATTTT
Found at i:6849620 original size:9 final size:9
Alignment explanation
Indices: 6849608--6849663 Score: 50
Period size: 9 Copynumber: 6.7 Consensus size: 9
6849598 AATATTATAT
6849608 ATATAATTA
1 ATATAATTA
6849617 ATATAA--A
1 ATATAATTA
*
6849624 AGTATAAATA
1 A-TATAATTA
*
6849634 TTAT-A-T-
1 ATATAATTA
6849640 ATATAATTA
1 ATATAATTA
6849649 ATATAATTA
1 ATATAATTA
6849658 ATATAA
1 ATATAA
6849664 AATATTATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
6 3 0.08
7 4 0.10
8 7 0.18
9 24 0.62
10 1 0.03
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (9 bp):
ATATAATTA
Found at i:6849667 original size:34 final size:33
Alignment explanation
Indices: 6849594--6849678 Score: 138
Period size: 32 Copynumber: 2.6 Consensus size: 33
6849584 AACTGTTTTC
6849594 ATAAAATATTATATATATAATTAATATAAAAGT
1 ATAAAATATTATATATATAATTAATATAAAAGT
6849627 AT-AAATATTATATATATAATTAATATAATTAA-T
1 ATAAAATATTATATATATAATTAATATAA--AAGT
6849660 ATAAAATATTATATATATA
1 ATAAAATATTATATATATA
6849679 TATAATCGGA
Statistics
Matches: 49, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
32 26 0.53
33 5 0.10
34 18 0.37
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.42
Consensus pattern (33 bp):
ATAAAATATTATATATATAATTAATATAAAAGT
Found at i:6852550 original size:22 final size:21
Alignment explanation
Indices: 6852490--6852550 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
6852480 AAATTTAATT
*
6852490 AAATTATTATAACAATAAATA
1 AAATTATTATATCAATAAATA
* *
6852511 ATATTA-TATATTAAAATAAATA
1 AAATTATTATA-T-CAATAAATA
6852533 AAATTAATTATATCAATA
1 AAATT-ATTATATCAATA
6852551 GTTTAACCTA
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
20 4 0.13
21 5 0.16
22 16 0.52
23 2 0.06
24 4 0.13
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (21 bp):
AAATTATTATATCAATAAATA
Found at i:6853204 original size:105 final size:105
Alignment explanation
Indices: 6853030--6853440 Score: 473
Period size: 105 Copynumber: 3.9 Consensus size: 105
6853020 ACATTTGGTT
* *
6853030 ACTAAAAAA-CCTTAGTGTGACAACATTGATGGTCACGAAATATACTTTCAGTGTCAAACAAATT
1 ACTAAAAAATACTTAGTGTGACAACATTGATGGTCACAAAATATACTTTCAGTGTCAAACAAATT
*
6853094 TATCACAATTTATATTGATAATAGTATCAAACATTAGCTC
66 CATCACAATTTATATTGATAATAGTATCAAACATTAGCTC
* * * *
6853134 ACTAAAAAATACTTAGTGTGATAATATTGATGGTCACAAAATATA-TTGTTAGTGTCAAATAAAT
1 ACTAAAAAATACTTAGTGTGACAACATTGATGGTCACAAAATATACTT-TCAGTGTCAAACAAAT
* * * * * *
6853198 TCATCACAA-TT-TA-T-CT--TAGTGTCGAACATTTGGTT
65 TCATCACAATTTATATTGATAATAGTATCAAACATTAGCTC
*
6853233 ACTAAAAAAAATGAACCTTAGTGTGACAACATTGATGGTCACGAAATAGTGACTTTCAGTGTCAA
1 ACT--AAAAAAT--A-CTTAGTGTGACAACATTGATGGTCACAAAATA-T-ACTTTCAGTGTCAA
*
6853298 ACAAATTTATCACAATTTATATTGATAATAGTATCAAACATTAGCTC
59 ACAAATTCATCACAATTTATATTGATAATAGTATCAAACATTAGCTC
* * *
6853345 ACTAAAAAATACTTAGTGTGA-TACTATTGATGGTCACAAAATATA-TTGTTAGTGTCAAATAAA
1 ACTAAAAAATACTTAGTGTGACAAC-ATTGATGGTCACAAAATATACTT-TCAGTGTCAAACAAA
* * *
6853408 TTCATCACAATTTATGTTGATAATTGTGTCAAA
64 TTCATCACAATTTATATTGATAATAGTATCAAA
6853441 TAGATTGTTA
Statistics
Matches: 256, Mismatches: 33, Indels: 35
0.79 0.10 0.11
Matches are distributed among these distances:
99 17 0.07
101 8 0.03
102 1 0.00
103 3 0.01
104 44 0.17
105 97 0.38
106 26 0.10
107 31 0.12
108 3 0.01
109 1 0.00
110 8 0.03
112 17 0.07
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (105 bp):
ACTAAAAAATACTTAGTGTGACAACATTGATGGTCACAAAATATACTTTCAGTGTCAAACAAATT
CATCACAATTTATATTGATAATAGTATCAAACATTAGCTC
Found at i:6853363 original size:211 final size:203
Alignment explanation
Indices: 6853007--6853422 Score: 751
Period size: 211 Copynumber: 2.0 Consensus size: 203
6852997 AATAAGGATA
6853007 ATCTTAGTGTCGAACATTTGGTTACTAAAAAACCTTAGTGTGACAACATTGATGGTCACGAAATA
1 ATCTTAGTGTCGAACATTTGGTTACTAAAAAACCTTAGTGTGACAACATTGATGGTCACGAAATA
6853072 TACTTTCAGTGTCAAACAAATTTATCACAATTTATATTGATAATAGTATCAAACATTAGCTCACT
66 TACTTTCAGTGTCAAACAAATTTATCACAATTTATATTGATAATAGTATCAAACATTAGCTCACT
6853137 AAAAAATACTTAGTGTGATAATATTGATGGTCACAAAATATATTGTTAGTGTCAAATAAATTCAT
131 AAAAAATACTTAGTGTGATAATATTGATGGTCACAAAATATATTGTTAGTGTCAAATAAATTCAT
6853202 CACAATTT
196 CACAATTT
6853210 ATCTTAGTGTCGAACATTTGGTTACTAAAAAAAATGAACCTTAGTGTGACAACATTGATGGTCAC
1 ATCTTAGTGTCGAACATTTGGTTACT----AAAA--AACCTTAGTGTGACAACATTGATGGTCAC
6853275 GAAATAGTGACTTTCAGTGTCAAACAAATTTATCACAATTTATATTGATAATAGTATCAAACATT
60 GAAATA-T-ACTTTCAGTGTCAAACAAATTTATCACAATTTATATTGATAATAGTATCAAACATT
*
6853340 AGCTCACTAAAAAATACTTAGTGTGATACTATTGATGGTCACAAAATATATTGTTAGTGTCAAAT
123 AGCTCACTAAAAAATACTTAGTGTGATAATATTGATGGTCACAAAATATATTGTTAGTGTCAAAT
6853405 AAATTCATCACAATTT
188 AAATTCATCACAATTT
6853421 AT
1 AT
6853423 GTTGATAATT
Statistics
Matches: 204, Mismatches: 1, Indels: 8
0.96 0.00 0.04
Matches are distributed among these distances:
203 26 0.13
207 4 0.02
209 35 0.17
210 1 0.00
211 138 0.68
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (203 bp):
ATCTTAGTGTCGAACATTTGGTTACTAAAAAACCTTAGTGTGACAACATTGATGGTCACGAAATA
TACTTTCAGTGTCAAACAAATTTATCACAATTTATATTGATAATAGTATCAAACATTAGCTCACT
AAAAAATACTTAGTGTGATAATATTGATGGTCACAAAATATATTGTTAGTGTCAAATAAATTCAT
CACAATTT
Found at i:6861529 original size:78 final size:78
Alignment explanation
Indices: 6861400--6861554 Score: 310
Period size: 78 Copynumber: 2.0 Consensus size: 78
6861390 TCTCAGTTAT
6861400 ATCCAAAAAAGACCAAACCTTCTTTCCCTTTATATTTTTCTAGATCAAACCTCCCCTAAATAAAC
1 ATCCAAAAAAGACCAAACCTTCTTTCCCTTTATATTTTTCTAGATCAAACCTCCCCTAAATAAAC
6861465 CAAAAGCCATTCG
66 CAAAAGCCATTCG
6861478 ATCCAAAAAAGACCAAACCTTCTTTCCCTTTATATTTTTCTAGATCAAACCTCCCCTAAATAAAC
1 ATCCAAAAAAGACCAAACCTTCTTTCCCTTTATATTTTTCTAGATCAAACCTCCCCTAAATAAAC
6861543 CAAAAGCCATTC
66 CAAAAGCCATTC
6861555 CCTATCTTCT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.37, C:0.30, G:0.05, T:0.28
Consensus pattern (78 bp):
ATCCAAAAAAGACCAAACCTTCTTTCCCTTTATATTTTTCTAGATCAAACCTCCCCTAAATAAAC
CAAAAGCCATTCG
Found at i:6871001 original size:17 final size:17
Alignment explanation
Indices: 6870979--6871011 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6870969 GTCGGCTAAA
*
6870979 AGAAATGGTTATGGTAT
1 AGAAATGGATATGGTAT
6870996 AGAAATGGATATGGTA
1 AGAAATGGATATGGTA
6871012 AAGGTAAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.30, T:0.30
Consensus pattern (17 bp):
AGAAATGGATATGGTAT
Found at i:6871274 original size:6 final size:6
Alignment explanation
Indices: 6871263--6871297 Score: 61
Period size: 6 Copynumber: 5.7 Consensus size: 6
6871253 GTAGGAGTTC
6871263 TTTTCT TTTTCT TTTTCT TCTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT T-TTTCT TTTTCT TTTT
6871298 GTTGCAACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTCT
Found at i:6871288 original size:13 final size:12
Alignment explanation
Indices: 6871263--6871297 Score: 61
Period size: 13 Copynumber: 2.8 Consensus size: 12
6871253 GTAGGAGTTC
6871263 TTTTCTTTTTCT
1 TTTTCTTTTTCT
6871275 TTTTCTTCTTTCT
1 TTTTCTT-TTTCT
6871288 TTTTCTTTTT
1 TTTTCTTTTT
6871298 GTTGCAACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTCTTTTTCT
Found at i:6873800 original size:10 final size:10
Alignment explanation
Indices: 6873785--6873809 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
6873775 ACAATAAATT
6873785 TTTATCTCAA
1 TTTATCTCAA
6873795 TTTATCTCAA
1 TTTATCTCAA
6873805 TTTAT
1 TTTAT
6873810 TTATTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.16, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTATCTCAA
Found at i:6881388 original size:14 final size:14
Alignment explanation
Indices: 6881369--6881404 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
6881359 TATTGCGAAT
6881369 TTTCATTTCAAATA
1 TTTCATTTCAAATA
6881383 TTTCATTTCAAATA
1 TTTCATTTCAAATA
6881397 TTTCATTT
1 TTTCATTT
6881405 GACATTCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTCATTTCAAATA
Found at i:6882150 original size:20 final size:20
Alignment explanation
Indices: 6882127--6882168 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
6882117 CCTTGAGCCC
*
6882127 TCATTTTTCCTTCTTTTTTT
1 TCATTTTTCCTTCATTTTTT
* *
6882147 TCATTTTTTCTTGATTTTTT
1 TCATTTTTCCTTCATTTTTT
6882167 TC
1 TC
6882169 CTTTCTCATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.07, C:0.17, G:0.02, T:0.74
Consensus pattern (20 bp):
TCATTTTTCCTTCATTTTTT
Found at i:6884459 original size:2 final size:2
Alignment explanation
Indices: 6884454--6884481 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6884444 ATTAATTGTA
6884454 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6884482 TAGCTTGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6884550 original size:3 final size:3
Alignment explanation
Indices: 6884538--6884632 Score: 95
Period size: 3 Copynumber: 31.7 Consensus size: 3
6884528 TAATAGTAGT
* * * *
6884538 ATA ATG ATA ATA AAA ATA ATA AGTG ATG ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA
* * *
6884584 ATA ATAA ATA ATA ATA ATA ATA ATA AT- ATG TTA GTA ATA ATA AT-
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6884628 ATA AT
1 ATA AT
6884633 TACAATAATT
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
2 4 0.05
3 69 0.88
4 5 0.06
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:6884566 original size:22 final size:21
Alignment explanation
Indices: 6884538--6884641 Score: 95
Period size: 22 Copynumber: 5.0 Consensus size: 21
6884528 TAATAGTAGT
*
6884538 ATAATGATAATAAAAATAATA
1 ATAATGATAATAATAATAATA
*
6884559 AGTGATGATAATAATAATAATA
1 A-TAATGATAATAATAATAATA
*
6884581 ATAATAATAAATAATAATAATA
1 ATAATGAT-AATAATAATAATA
* ** *
6884603 ATAATAAT-ATGTTAGTAATA
1 ATAATGATAATAATAATAATA
* *
6884623 ATAAT-ATAATTACAATAAT
1 ATAATGATAATAATAATAAT
6884642 TAGTAAAGTA
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
19 2 0.03
20 21 0.30
21 6 0.09
22 40 0.58
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.34
Consensus pattern (21 bp):
ATAATGATAATAATAATAATA
Found at i:6884781 original size:20 final size:19
Alignment explanation
Indices: 6884729--6884781 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
6884719 GTAATAATGG
* *
6884729 TAATAATATTATAATTTTAA
1 TAATAATAATA-AATATTAA
6884749 TAATAAT-ATAAATATTAA
1 TAATAATAATAAATATTAA
6884767 TTAATAATAATAAAT
1 -TAATAATAATAAAT
6884782 GATAACTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 7 0.24
19 9 0.31
20 13 0.45
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TAATAATAATAAATATTAA
Found at i:6884791 original size:20 final size:19
Alignment explanation
Indices: 6884729--6884793 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 19
6884719 GTAATAATGG
*
6884729 TAATAATATTATAATTTTAA-
1 TAATAATA-TA-AATATTAAC
*
6884749 TAATAATATAAATATTAAT
1 TAATAATATAAATATTAAC
6884768 TAATAATAATAAATGA-TAAC
1 TAATAAT-ATAAAT-ATTAAC
6884788 TAATAA
1 TAATAA
6884794 CAGTATAGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
18 7 0.17
19 9 0.22
20 23 0.57
21 1 0.03
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
TAATAATATAAATATTAAC
Found at i:6896445 original size:41 final size:41
Alignment explanation
Indices: 6896399--6896489 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 41
6896389 CAGTGTTTTC
*
6896399 ATAAAAACGCCACTA-ATG-TTCTATTATATTGCGGCGTTTGT
1 ATAAAAACGCCACTATA-GATT-AATTATATTGCGGCGTTTGT
* * *
6896440 TTAAAAAATGCCACTATAGATTAATTCTATTGCGGCGTTTGT
1 AT-AAAAACGCCACTATAGATTAATTATATTGCGGCGTTTGT
6896482 ATAAAAAC
1 ATAAAAAC
6896490 ACTGCTAAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
41 6 0.15
42 32 0.78
43 3 0.07
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35
Consensus pattern (41 bp):
ATAAAAACGCCACTATAGATTAATTATATTGCGGCGTTTGT
Found at i:6898545 original size:41 final size:39
Alignment explanation
Indices: 6898457--6898547 Score: 94
Period size: 41 Copynumber: 2.3 Consensus size: 39
6898447 TTTGTGAAAG
* **
6898457 AAATGCCGCTAAAGTTTCATTTTGTGGCGTTTCGATTGT
1 AAATGCCGCTAAAGTTTAATTTTGTGGCGTTTCGATTCC
* * *
6898496 AAACGCCGCTATATGTTTAAATTTTGTGGCGTTT-GCTCTCC
1 AAATGCCGCTA-AAGTTT-AATTTTGTGGCGTTTCGAT-TCC
6898537 AAATGCCGCTA
1 AAATGCCGCTA
6898548 CATAATAGTT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
39 10 0.24
40 7 0.17
41 25 0.60
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.37
Consensus pattern (39 bp):
AAATGCCGCTAAAGTTTAATTTTGTGGCGTTTCGATTCC
Found at i:6898674 original size:2 final size:2
Alignment explanation
Indices: 6898667--6898693 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6898657 TTTAAATGAT
6898667 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
6898694 TTCTTCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6899855 original size:30 final size:30
Alignment explanation
Indices: 6899784--6899843 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
6899774 ACAATTTAAG
6899784 GCAAAATGTTTTTGGACTTGAATTGAATTT
1 GCAAAATGTTTTTGGACTTGAATTGAATTT
*
6899814 GCAAAATGTTTTTGGATTTGAATTGAATTT
1 GCAAAATGTTTTTGGACTTGAATTGAATTT
6899844 ATTCAAAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (30 bp):
GCAAAATGTTTTTGGACTTGAATTGAATTT
Found at i:6899950 original size:21 final size:21
Alignment explanation
Indices: 6899924--6899981 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
6899914 AGGGTGTCAA
6899924 AGTGCATCCATGCATCCCTGC
1 AGTGCATCCATGCATCCCTGC
6899945 AGTGCATCCATGCATCCCTGC
1 AGTGCATCCATGCATCCCTGC
*
6899966 AGTACATCCATGCATC
1 AGTGCATCCATGCATC
6899982 TGCACTAATG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.22, C:0.36, G:0.17, T:0.24
Consensus pattern (21 bp):
AGTGCATCCATGCATCCCTGC
Found at i:6900074 original size:21 final size:21
Alignment explanation
Indices: 6900044--6900179 Score: 222
Period size: 21 Copynumber: 6.6 Consensus size: 21
6900034 ATGCAATTAG
*
6900044 TGCATCGATGCATCCTTTCCA
1 TGCATCGATGCATCCTTGCCA
*
6900065 TGCATGGATGCATCCTTGCCA
1 TGCATCGATGCATCCTTGCCA
*
6900086 TGCATCGATGCATCCTTTCCA
1 TGCATCGATGCATCCTTGCCA
6900107 TGCATCGATGCATCCTTGCCA
1 TGCATCGATGCATCCTTGCCA
6900128 TGCATCGATGCATCC-TGCCA
1 TGCATCGATGCATCCTTGCCA
6900148 TGCATCGATGCATCC-TGCCA
1 TGCATCGATGCATCCTTGCCA
*
6900168 TGCATCCATGCA
1 TGCATCGATGCA
6900180 AGGCTGCAAG
Statistics
Matches: 109, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
20 36 0.33
21 73 0.67
ACGTcount: A:0.20, C:0.33, G:0.18, T:0.29
Consensus pattern (21 bp):
TGCATCGATGCATCCTTGCCA
Found at i:6900570 original size:33 final size:33
Alignment explanation
Indices: 6900533--6900595 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
6900523 CCTTTTGTAA
*
6900533 AGGGAAAGGTTCTAGCTTAGCCCGTGAAAAGCT
1 AGGGAAAGGTTCTAGCTTAACCCGTGAAAAGCT
*
6900566 AGGGAAAGGTTCTAGTTTAACCCGTGAAAA
1 AGGGAAAGGTTCTAGCTTAACCCGTGAAAA
6900596 ACCATGCATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (33 bp):
AGGGAAAGGTTCTAGCTTAACCCGTGAAAAGCT
Found at i:6900662 original size:20 final size:21
Alignment explanation
Indices: 6900597--6900695 Score: 166
Period size: 20 Copynumber: 4.8 Consensus size: 21
6900587 CCGTGAAAAA
*
6900597 CCATGCATCGATGCATCCTTT
1 CCATGCATCGATGCATCCTTG
6900618 CCATGCATCGATGCATCCTTG
1 CCATGCATCGATGCATCCTTG
6900639 CCATGCATCGATGCATCC-TG
1 CCATGCATCGATGCATCCTTG
6900659 CCATGCATCGATGCATCC-TG
1 CCATGCATCGATGCATCCTTG
*
6900679 CCATGCATCCATGCATC
1 CCATGCATCGATGCATC
6900696 AAGGCTGCAA
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
20 38 0.50
21 38 0.50
ACGTcount: A:0.20, C:0.35, G:0.17, T:0.27
Consensus pattern (21 bp):
CCATGCATCGATGCATCCTTG
Found at i:6900666 original size:12 final size:12
Alignment explanation
Indices: 6900628--6900688 Score: 57
Period size: 12 Copynumber: 5.7 Consensus size: 12
6900618 CCATGCATCG
6900628 ATGCATCCTTGCC
1 ATGCATCC-TGCC
6900641 ATGCAT-C-G--
1 ATGCATCCTGCC
6900649 ATGCATCCTGCC
1 ATGCATCCTGCC
6900661 ATGCAT-C-G--
1 ATGCATCCTGCC
6900669 ATGCATCCTGCC
1 ATGCATCCTGCC
6900681 ATGCATCC
1 ATGCATCC
6900689 ATGCATCAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 17
0.70 0.00 0.30
Matches are distributed among these distances:
8 12 0.30
9 2 0.05
10 4 0.10
11 1 0.03
12 15 0.38
13 6 0.15
ACGTcount: A:0.20, C:0.36, G:0.18, T:0.26
Consensus pattern (12 bp):
ATGCATCCTGCC
Found at i:6901099 original size:34 final size:33
Alignment explanation
Indices: 6901060--6901130 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 33
6901050 TTTTGTAAAG
* *
6901060 GGGAAAGGTTCTAGCTTAGCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAACCCGTG-AAAAACTA
*
6901094 GGGAAAGGTTCTAGTTTAACCCGTGAAAAACTA
1 GGGAAAGGTTCTAGCTTAACCCGTGAAAAACTA
6901127 GGGA
1 GGGA
6901131 GTTGTAAGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 11 0.32
34 23 0.68
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (33 bp):
GGGAAAGGTTCTAGCTTAACCCGTGAAAAACTA
Found at i:6902602 original size:4 final size:4
Alignment explanation
Indices: 6902593--6902627 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
6902583 GTAAAATTAG
6902593 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
6902628 TATGCCCTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:6903930 original size:29 final size:29
Alignment explanation
Indices: 6903888--6903946 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
6903878 ATTTTCACCT
*
6903888 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTAATGTAAGCAATGACATCAA
*
6903917 AACTAAATTAATGTAAGGAATGACATCAA
1 AACTAAATTAATGTAAGCAATGACATCAA
6903946 A
1 A
6903947 TTAATTTAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.51, C:0.12, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTAATGTAAGCAATGACATCAA
Found at i:6914393 original size:21 final size:21
Alignment explanation
Indices: 6914368--6914428 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
6914358 GTAAATCGCA
*
6914368 TTGCGATTTTCAAAATTCGAG
1 TTGCGATTTTCCAAATTCGAG
*
6914389 TTGCGATTTTCCAAATTCGCG
1 TTGCGATTTTCCAAATTCGAG
*
6914410 TTACGATTTTCCAAATTCG
1 TTGCGATTTTCCAAATTCG
6914429 CAACGCGAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (21 bp):
TTGCGATTTTCCAAATTCGAG
Found at i:6914499 original size:20 final size:20
Alignment explanation
Indices: 6914421--6914509 Score: 80
Period size: 19 Copynumber: 4.5 Consensus size: 20
6914411 TACGATTTTC
6914421 CAAATTCGCAACGCGAATCTAT
1 CAAATTCGCAACGCGAAT-T-T
* *
6914443 -AAA-TCGCAACACAGAA-GT
1 CAAATTCGCAACGC-GAATTT
*
6914461 CAAATTCGCAAC-TGAATTT
1 CAAATTCGCAACGCGAATTT
6914480 CAAATTCGCAACGCGAATTT
1 CAAATTCGCAACGCGAATTT
*
6914500 -AATTTCGCAA
1 CAAATTCGCAA
6914510 TAGGTTTTAG
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
18 4 0.07
19 25 0.45
20 21 0.38
21 6 0.11
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.24
Consensus pattern (20 bp):
CAAATTCGCAACGCGAATTT
Found at i:6914686 original size:14 final size:15
Alignment explanation
Indices: 6914667--6914704 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
6914657 TCCCCATCTC
6914667 TAATTTTTTT-TACA
1 TAATTTTTTTCTACA
*
6914681 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
6914697 TAATTTTT
1 TAATTTTT
6914705 CAATGATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:6915278 original size:12 final size:12
Alignment explanation
Indices: 6915257--6915290 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
6915247 ACCACATTTC
*
6915257 CAATACCAAACA
1 CAATATCAAACA
6915269 CAATATCAAACA
1 CAATATCAAACA
*
6915281 CAATCTCAAA
1 CAATATCAAA
6915291 ACCTACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:6915470 original size:24 final size:24
Alignment explanation
Indices: 6915412--6915458 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
6915402 AGTCAGTATT
6915412 CGAAATTTGATCTTGGTCAATACC
1 CGAAATTTGATCTTGGTCAATACC
6915436 CGAAATTTGATCTTGGTCAATAC
1 CGAAATTTGATCTTGGTCAATAC
6915459 TCGGATTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (24 bp):
CGAAATTTGATCTTGGTCAATACC
Found at i:6918086 original size:20 final size:20
Alignment explanation
Indices: 6918061--6918134 Score: 130
Period size: 20 Copynumber: 3.7 Consensus size: 20
6918051 ACCAAAAATC
6918061 GCGTTGCGAATTTGGCTTTT
1 GCGTTGCGAATTTGGCTTTT
6918081 GCGTTGCGAATTTGGCTTTT
1 GCGTTGCGAATTTGGCTTTT
* *
6918101 GCGTTGCGAATTTGACTTTC
1 GCGTTGCGAATTTGGCTTTT
6918121 GCGTTGCGAATTTG
1 GCGTTGCGAATTTG
6918135 ACTATCGCAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.12, C:0.16, G:0.30, T:0.42
Consensus pattern (20 bp):
GCGTTGCGAATTTGGCTTTT
Found at i:6918135 original size:20 final size:20
Alignment explanation
Indices: 6918059--6918142 Score: 123
Period size: 20 Copynumber: 4.2 Consensus size: 20
6918049 AAACCAAAAA
*
6918059 TCGCGTTGCGAATTTGGCTT
1 TCGCGTTGCGAATTTGACTT
* *
6918079 TTGCGTTGCGAATTTGGCTT
1 TCGCGTTGCGAATTTGACTT
*
6918099 TTGCGTTGCGAATTTGACTT
1 TCGCGTTGCGAATTTGACTT
*
6918119 TCGCGTTGCGAATTTGACTA
1 TCGCGTTGCGAATTTGACTT
6918139 TCGC
1 TCGC
6918143 AACGCTTATT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.13, C:0.19, G:0.27, T:0.40
Consensus pattern (20 bp):
TCGCGTTGCGAATTTGACTT
Found at i:6918623 original size:18 final size:18
Alignment explanation
Indices: 6918602--6918638 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
6918592 GTAATTGGAG
6918602 TTTGAATTTCAATTTCAA
1 TTTGAATTTCAATTTCAA
* *
6918620 TTTGAGTTTGAATTTCAA
1 TTTGAATTTCAATTTCAA
6918638 T
1 T
6918639 ATAAATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.08, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTCAATTTCAA
Found at i:6918645 original size:24 final size:24
Alignment explanation
Indices: 6918594--6918646 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
6918584 TTTCATATGT
* * *
6918594 AATTGGAGTTTGAATTTCAATTTC
1 AATTTGAGTTTGAATTTCAATATA
6918618 AATTTGAGTTTGAATTTCAATATA
1 AATTTGAGTTTGAATTTCAATATA
6918642 AATTT
1 AATTT
6918647 CGGCTCCACT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.06, G:0.13, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTCAATATA
Found at i:6918972 original size:39 final size:39
Alignment explanation
Indices: 6918915--6919001 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
6918905 TCCGATGCTC
*
6918915 ATCAAAATCCAAAGCTCATATGGTGCCAAGTAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
*
6918954 ATCAAAATCCAAATCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
6918993 ATCAAAATC
1 ATCAAAATC
6919002 TACAACTTGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.47, C:0.20, G:0.15, T:0.18
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
Found at i:6919202 original size:20 final size:20
Alignment explanation
Indices: 6919177--6919219 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
6919167 ATGTTGCGAT
6919177 CAACGCGAAAGTCAAATTCG
1 CAACGCGAAAGTCAAATTCG
*
6919197 CAACGCTAAAGTCAAATTCG
1 CAACGCGAAAGTCAAATTCG
6919217 CAA
1 CAA
6919220 ACCAAAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.26, G:0.16, T:0.16
Consensus pattern (20 bp):
CAACGCGAAAGTCAAATTCG
Found at i:6919253 original size:20 final size:20
Alignment explanation
Indices: 6919228--6919290 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
6919218 AAACCAAAAA
*
6919228 TCGCGTTGCGAATTTGAGTT
1 TCGCGTTGCGAATTTGACTT
* *
6919248 TCGCGTTGTGAATTTAACTT
1 TCGCGTTGCGAATTTGACTT
6919268 TCGCGTTGCGAATTTGTACTT
1 TCGCGTTGCGAATTTG-ACTT
6919289 TC
1 TC
6919291 AACAGGTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
20 31 0.84
21 6 0.16
ACGTcount: A:0.16, C:0.17, G:0.24, T:0.43
Consensus pattern (20 bp):
TCGCGTTGCGAATTTGACTT
Found at i:6919431 original size:14 final size:14
Alignment explanation
Indices: 6919411--6919459 Score: 80
Period size: 14 Copynumber: 3.5 Consensus size: 14
6919401 CAAATTAAAC
6919411 AAATCAACTTTTAA
1 AAATCAACTTTTAA
*
6919425 AAGTCAACTTTTAA
1 AAATCAACTTTTAA
*
6919439 AAATCAACTTTTAC
1 AAATCAACTTTTAA
6919453 AAATCAA
1 AAATCAA
6919460 TTAATCAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (14 bp):
AAATCAACTTTTAA
Found at i:6919469 original size:28 final size:28
Alignment explanation
Indices: 6919392--6919469 Score: 72
Period size: 28 Copynumber: 2.8 Consensus size: 28
6919382 ATAATTCTTA
* *
6919392 TTTACACATCAAATTAAAC-AAATCAACT
1 TTTACAAATC-AATTAATCAAAATCAACT
* *
6919420 TTTA-AAAGTCAACTT-TTAAAAATCAACT
1 TTTACAAA-TCAA-TTAATCAAAATCAACT
6919448 TTTACAAATCAATTAATCAAAA
1 TTTACAAATCAATTAATCAAAA
6919470 AATAAATCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
27 6 0.15
28 30 0.77
29 3 0.08
ACGTcount: A:0.50, C:0.17, G:0.01, T:0.32
Consensus pattern (28 bp):
TTTACAAATCAATTAATCAAAATCAACT
Found at i:6920905 original size:21 final size:20
Alignment explanation
Indices: 6920881--6920979 Score: 76
Period size: 21 Copynumber: 4.8 Consensus size: 20
6920871 GCGGGCGGGA
*
6920881 CCTCTTGAACGATGACAGGG
1 CCTCTTGAACGATGAGAGGG
* *
6920901 TCCTCTTGAACGGTGGGAGAGG
1 -CCTCTTGAACGATGAGAG-GG
*
6920923 CCTCTTCG-ATGATGAGAGGGG
1 CCTCTT-GAACGATGAGA-GGG
*
6920944 CCTCTTGAACGAT-AGGAGGCA
1 CCTCTTGAACGATGA-GAGG-G
*
6920965 CCTCTTGAATGATGA
1 CCTCTTGAACGATGA
6920980 TAGATGCATC
Statistics
Matches: 62, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
20 4 0.06
21 53 0.85
22 5 0.08
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (20 bp):
CCTCTTGAACGATGAGAGGG
Found at i:6920927 original size:42 final size:42
Alignment explanation
Indices: 6920861--6920954 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 42
6920851 GTGAATCGGG
* *
6920861 CTCTTGAACGGCGGGCGGGACCTCTT-GAACGATGACAGGGTC
1 CTCTTGAACGGCGGGAGGGACCTCTTCG-ACGATGACAGGGGC
* * *
6920903 CTCTTGAACGGTGGGAGAGG-CCTCTTCGATGATGAGAGGGGC
1 CTCTTGAACGGCGGGAG-GGACCTCTTCGACGATGACAGGGGC
6920945 CTCTTGAACG
1 CTCTTGAACG
6920955 ATAGGAGGCA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 42 0.93
43 3 0.07
ACGTcount: A:0.19, C:0.23, G:0.36, T:0.21
Consensus pattern (42 bp):
CTCTTGAACGGCGGGAGGGACCTCTTCGACGATGACAGGGGC
Found at i:6920969 original size:42 final size:42
Alignment explanation
Indices: 6920879--6920979 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 42
6920869 CGGCGGGCGG
* * * *
6920879 GACCTCTTGAACGATGACAGGGTCCTCTTGAACGGTGGGAGA
1 GACCTCTTGAATGATGACAGGGGCCTCTTGAACGATAGGAGA
* *
6920921 GGCCTCTTCG-ATGATGAGAGGGGCCTCTTGAACGATAGGAG-
1 GACCTCTT-GAATGATGACAGGGGCCTCTTGAACGATAGGAGA
6920962 GCACCTCTTGAATGATGA
1 G-ACCTCTTGAATGATGA
6920980 TAGATGCATC
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
41 2 0.04
42 46 0.94
43 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.23
Consensus pattern (42 bp):
GACCTCTTGAATGATGACAGGGGCCTCTTGAACGATAGGAGA
Found at i:6921144 original size:4 final size:4
Alignment explanation
Indices: 6921123--6921164 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
6921113 GGGCCGCTGA
* * *
6921123 AAAT AAAT TAAT ACAT AAAT AAGT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
6921165 TACCGAAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:6923142 original size:20 final size:20
Alignment explanation
Indices: 6923119--6923170 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
6923109 AGAAGTTTTT
*
6923119 GAAACTTAAATTCGCAACGC
1 GAAACTAAAATTCGCAACGC
*
6923139 GAAAATGAAAA-TCGCAACGC
1 GAAACT-AAAATTCGCAACGC
6923159 GAAACTAAAATT
1 GAAACTAAAATT
6923171 GCGTTGCGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 4 0.15
20 20 0.74
21 3 0.11
ACGTcount: A:0.48, C:0.19, G:0.15, T:0.17
Consensus pattern (20 bp):
GAAACTAAAATTCGCAACGC
Found at i:6923695 original size:20 final size:20
Alignment explanation
Indices: 6923670--6923852 Score: 205
Period size: 20 Copynumber: 9.2 Consensus size: 20
6923660 GCGTAAAAAC
6923670 ATTTGACTTTCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
*
6923690 ATTTGAC-TTCTGTGTTGCG-
1 ATTTGACTTTC-GCGTTGCGA
* *
6923709 ATTT-ACAAATTCGCATTGCGA
1 ATTTGAC--TTTCGCGTTGCGA
* *
6923730 ATTTGACTTTTGTGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
* *
6923750 ATTTGACTTT-GTGTTGTGA
1 ATTTGACTTTCGCGTTGCGA
*
6923769 ATTTGACTATCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
*
6923789 ATTTGACTTT-GTGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
*
6923808 ATTTGACTATCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
*
6923828 ATTTGACTATCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
6923848 ATTTG
1 ATTTG
6923853 GCTTCTGTGT
Statistics
Matches: 140, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
18 2 0.01
19 41 0.29
20 88 0.63
21 7 0.05
22 2 0.01
ACGTcount: A:0.19, C:0.15, G:0.24, T:0.42
Consensus pattern (20 bp):
ATTTGACTTTCGCGTTGCGA
Found at i:6923786 original size:39 final size:39
Alignment explanation
Indices: 6923724--6923852 Score: 195
Period size: 39 Copynumber: 3.3 Consensus size: 39
6923714 CAAATTCGCA
* * *
6923724 TTGCGAATTTGACTTTTGTGTTGCGAATTTGACTTTGTG
1 TTGCGAATTTGACTATCGCGTTGCGAATTTGACTTTGTG
*
6923763 TTGTGAATTTGACTATCGCGTTGCGAATTTGACTTTGTG
1 TTGCGAATTTGACTATCGCGTTGCGAATTTGACTTTGTG
* *
6923802 TTGCGAATTTGACTATCGCGTTGCGAATTTGACTATCGCG
1 TTGCGAATTTGACTATCGCGTTGCGAATTTGACT-TTGTG
6923842 TTGCGAATTTG
1 TTGCGAATTTG
6923853 GCTTCTGTGT
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 68 0.83
40 14 0.17
ACGTcount: A:0.18, C:0.14, G:0.26, T:0.43
Consensus pattern (39 bp):
TTGCGAATTTGACTATCGCGTTGCGAATTTGACTTTGTG
Found at i:6923794 original size:59 final size:59
Alignment explanation
Indices: 6923670--6923867 Score: 258
Period size: 59 Copynumber: 3.3 Consensus size: 59
6923660 GCGTAAAAAC
* * * *
6923670 ATTTGACTTTCGCGTTGCGAATTTGACTTCTGTGTTGCG-ATTT-ACAAATTCGCATTGCGA
1 ATTTGACTTTTGTGTTGCGAATTTGACTT-TGTGTTGCGAATTTGAC-TA-TCGCGTTGCGA
*
6923730 ATTTGACTTTTGTGTTGCGAATTTGACTTTGTGTTGTGAATTTGACTATCGCGTTGCGA
1 ATTTGACTTTTGTGTTGCGAATTTGACTTTGTGTTGCGAATTTGACTATCGCGTTGCGA
* *
6923789 ATTTGAC-TTTGTGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTATCGCGTTGCGA
1 ATTTGACTTTTGTGTTGCGAATTTGACT-TTGTGTTGCGAATTTGACTATCGCGTTGCGA
* *
6923848 ATTTGGCTTCTGTGTTGCGA
1 ATTTGACTTTTGTGTTGCGA
6923868 TTTACAAAAT
Statistics
Matches: 124, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
58 20 0.16
59 59 0.48
60 43 0.35
61 2 0.02
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.42
Consensus pattern (59 bp):
ATTTGACTTTTGTGTTGCGAATTTGACTTTGTGTTGCGAATTTGACTATCGCGTTGCGA
Found at i:6923891 original size:21 final size:20
Alignment explanation
Indices: 6923864--6923914 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
6923854 CTTCTGTGTT
6923864 GCGATTTACAAAATCGCAAC
1 GCGATTTACAAAATCGCAAC
** *
6923884 GCGAATTTGGAAAATCGCAAT
1 GCG-ATTTACAAAATCGCAAC
6923905 GCGATTTACA
1 GCGATTTACA
6923915 TATTCGCGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (20 bp):
GCGATTTACAAAATCGCAAC
Found at i:6935599 original size:22 final size:23
Alignment explanation
Indices: 6935573--6935624 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
6935563 ACGTTGACCA
*
6935573 CCGTTGACCAGAACTTTGATCGG
1 CCGTTGACCAGAACATTGATCGG
* *
6935596 -CGTTGA-CTGACCATTGATCGG
1 CCGTTGACCAGAACATTGATCGG
6935617 CCGTTGAC
1 CCGTTGAC
6935625 TTTTTTCAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
CCGTTGACCAGAACATTGATCGG
Found at i:6937898 original size:32 final size:31
Alignment explanation
Indices: 6937823--6937899 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 31
6937813 CTATTGTGAC
* * *
6937823 TCTTAGGTAGGCTCTGCGGCCCTGAGATTAT
1 TCTTAGGTAGGCCCTGCGACCCTAAGATTAT
** * *
6937854 TCTCGGGTAGGCCCTGTGACCCTAAGATGTGT
1 TCTTAGGTAGGCCCTGCGACCCTAAGAT-TAT
6937886 TCTTAGGTAGGCCC
1 TCTTAGGTAGGCCC
6937900 CATGGCCCTG
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
31 22 0.61
32 14 0.39
ACGTcount: A:0.16, C:0.25, G:0.30, T:0.30
Consensus pattern (31 bp):
TCTTAGGTAGGCCCTGCGACCCTAAGATTAT
Found at i:6938534 original size:90 final size:90
Alignment explanation
Indices: 6938381--6938562 Score: 364
Period size: 90 Copynumber: 2.0 Consensus size: 90
6938371 TCCGGTGTTA
6938381 CTTGCAGAGTATGATATACGTGATTAGGGTGCATGTAATTTGCATTTTGTTTTTATATCCGAGTC
1 CTTGCAGAGTATGATATACGTGATTAGGGTGCATGTAATTTGCATTTTGTTTTTATATCCGAGTC
6938446 TGAAAATTTGTTTTTATATCCGAGT
66 TGAAAATTTGTTTTTATATCCGAGT
6938471 CTTGCAGAGTATGATATACGTGATTAGGGTGCATGTAATTTGCATTTTGTTTTTATATCCGAGTC
1 CTTGCAGAGTATGATATACGTGATTAGGGTGCATGTAATTTGCATTTTGTTTTTATATCCGAGTC
6938536 TGAAAATTTGTTTTTATATCCGAGT
66 TGAAAATTTGTTTTTATATCCGAGT
6938561 CT
1 CT
6938563 GAAAATTTGT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 92 1.00
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.43
Consensus pattern (90 bp):
CTTGCAGAGTATGATATACGTGATTAGGGTGCATGTAATTTGCATTTTGTTTTTATATCCGAGTC
TGAAAATTTGTTTTTATATCCGAGT
Found at i:6938551 original size:26 final size:26
Alignment explanation
Indices: 6938516--6938575 Score: 120
Period size: 26 Copynumber: 2.3 Consensus size: 26
6938506 TAATTTGCAT
6938516 TTTGTTTTTATATCCGAGTCTGAAAA
1 TTTGTTTTTATATCCGAGTCTGAAAA
6938542 TTTGTTTTTATATCCGAGTCTGAAAA
1 TTTGTTTTTATATCCGAGTCTGAAAA
6938568 TTTGTTTT
1 TTTGTTTT
6938576 AATTTCGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.23, C:0.10, G:0.15, T:0.52
Consensus pattern (26 bp):
TTTGTTTTTATATCCGAGTCTGAAAA
Found at i:6938590 original size:26 final size:26
Alignment explanation
Indices: 6938516--6938597 Score: 94
Period size: 26 Copynumber: 3.1 Consensus size: 26
6938506 TAATTTGCAT
* *
6938516 TTTGTTTTTATATCCGAGTCTGAAAA
1 TTTGTTTTAATATCCGAATCTGAAAA
* *
6938542 TTTGTTTTTATATCCGAGTCTGAAAA
1 TTTGTTTTAATATCCGAATCTGAAAA
*
6938568 TTTGTTTTAAT-TTCGAATACTGATAAA
1 TTTGTTTTAATATCCGAAT-CTGA-AAA
6938595 TTT
1 TTT
6938598 TATTTTGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
25 5 0.10
26 40 0.78
27 6 0.12
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (26 bp):
TTTGTTTTAATATCCGAATCTGAAAA
Found at i:6941294 original size:200 final size:200
Alignment explanation
Indices: 6940911--6941814 Score: 1021
Period size: 200 Copynumber: 4.6 Consensus size: 200
6940901 TTAAACATTT
* *
6940911 ATTACTTTAAAGTAATAGGTAAATTTACAATGTAAGAGGTAAAAATATATCAGTTTAATGACAAA
1 ATTACTTTAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATATCGGTTTAATGACAAA
* * * *
6940976 ATGCGAAAACATAAAGTTTCGATA-ATTTTGTATATGTATCGATACGTTTTGTCTAGTATGCTTC
66 ATGCGTAAACATAAAGTTTCGATACTTTTTGTATATGTATCGATACTTTTTGTCCAGTATGCTTC
* * * *
6941040 CCAAACGAGATGCACCTAGAAAATATCAATACGCGTATCAAAAGTATCGATTCTTACAACTTCGA
131 CCAAACGAGATGCACCTAGAAAGTATCGATACACGTATCAAAAGTATTGATTCTTACAACTTCGA
6941105 AACCA
196 AACCA
* * * **
6941110 ATTACTTCT-ATGTAATAGGTAAATTTACAATGTCAGCGGTAAAAATATACCAATTTAATGACAA
1 ATTACTT-TAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATATCGGTTTAATGACAA
* *
6941174 AATGCGTAAACATAAAGTTTCGATACTTTTTGTATATGTATCGATACTTTTTGTCTAGTATACTT
65 AATGCGTAAACATAAAGTTTCGATACTTTTTGTATATGTATCGATACTTTTTGTCCAGTATGCTT
*
6941239 CCCAAACAAGATGCACCTAGAAAGTATCGATACACGTATCAAAAGTATTGATTCTTACAACTTCG
130 CCCAAACGAGATGCACCTAGAAAGTATCGATACACGTATCAAAAGTATTGATTCTTACAACTTCG
*
6941304 AAACCG
195 AAACCA
* * *
6941310 ATTACTTTAAAGTAATAGGTAAATTTACAATGTTAGCAGTAAAAATATATCGATTTAATGACAAA
1 ATTACTTTAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATATCGGTTTAATGACAAA
* * * * * *
6941375 ATTCATAAATATAAA-TGTTCAATACTTTTTGTATATGTGTCGATACTTTTTTTCCAGTATGCTT
66 ATGCGTAAACATAAAGT-TTCGATACTTTTTGTATATGTATCGATACTTTTTGTCCAGTATGCTT
* * * * * ** ** ** *
6941439 CTCAAACGAGATGCACCCAGAAAGTATCGAT--TC-T-T-ACAACT-TTGAAACCGATTACTT-T
130 CCCAAACGAGATGCACCTAGAAAGTATCGATACACGTATCAAAAGTATTGATTCTTACAACTTCG
**
6941497 AAAGTA
195 AAACCA
** * * * ** *
6941503 A-TA-GGTAAA-T-TTA--T-AA--TATAA-G--CG-GTAAA-AATATACCGGTTTAATGACAAA
1 ATTACTTTAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATATCGGTTTAATGACAAA
*
6941554 ATGCGTAAACATAAAGTTTCGATACTTTTTGTATATGTATCGATACTTTTTGTCCAGTATGCTAC
66 ATGCGTAAACATAAAGTTTCGATACTTTTTGTATATGTATCGATACTTTTTGTCCAGTATGCTTC
* * * * * *
6941619 CCAAATGAGATGCACGC-AGAAAGTATCGATACACGTATCAAAATTATAGATTATTAAAACTTCA
131 CCAAACGAGATGCAC-CTAGAAAGTATCGATACACGTATCAAAAGTATTGATTCTTACAACTTCG
***
6941683 AAATTG
195 AAACCA
* *
6941689 ATTACTTTAAAGTAATAGGTTAATTTACAATGTAAGCGGTAAAAATATATTGGTTTAATGACAAA
1 ATTACTTTAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATATCGGTTTAATGACAAA
* * *
6941754 ATACGTAAACATAAAGTTTTGATACTTTTTGTATATGTATCGATACTTTTGGTCCAGTATG
66 ATGCGTAAACATAAAGTTTCGATACTTTTTGTATATGTATCGATACTTTTTGTCCAGTATG
6941815 AAAACACTGA
Statistics
Matches: 589, Mismatches: 89, Indels: 53
0.81 0.12 0.07
Matches are distributed among these distances:
179 102 0.17
180 4 0.01
181 2 0.00
182 1 0.00
183 2 0.00
184 8 0.01
185 8 0.01
186 7 0.01
187 3 0.01
188 4 0.01
189 3 0.01
190 3 0.01
191 4 0.01
192 3 0.01
193 6 0.01
194 10 0.02
195 8 0.01
196 2 0.00
197 1 0.00
198 2 0.00
199 86 0.15
200 320 0.54
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (200 bp):
ATTACTTTAAAGTAATAGGTAAATTTACAATGTAAGCGGTAAAAATATATCGGTTTAATGACAAA
ATGCGTAAACATAAAGTTTCGATACTTTTTGTATATGTATCGATACTTTTTGTCCAGTATGCTTC
CCAAACGAGATGCACCTAGAAAGTATCGATACACGTATCAAAAGTATTGATTCTTACAACTTCGA
AACCA
Found at i:6941533 original size:179 final size:179
Alignment explanation
Indices: 6941280--6941648 Score: 560
Period size: 179 Copynumber: 2.1 Consensus size: 179
6941270 ACACGTATCA
* * *
6941280 AAAGTATTGATTCTTACAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAATGTTA
1 AAAGTATCGATTCTTACAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAATATAA
* * *
6941345 GCAGTAAAAATATATCGATTTAATGACAAAATTCATAAATATAAA-TGTTCAATACTTTTTGTAT
66 GCAGTAAAAATATACCGATTTAATGACAAAATGCATAAACATAAAGT-TTCAATACTTTTTGTAT
* * * *
6941409 ATGTGTCGATACTTTTTTTCCAGTATGCTTCTCAAACGAGATGCACCCAG
130 ATGTATCGATACTTTTTGTCCAGTATGCTACCCAAACGAGATGCACCCAG
* *
6941459 AAAGTATCGATTCTTACAACTTTGAAACCGATTACTTTAAAGTAATAGGTAAATTTATAATATAA
1 AAAGTATCGATTCTTACAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAATATAA
* * * *
6941524 GCGGTAAAAATATACCGGTTTAATGACAAAATGCGTAAACATAAAGTTTCGATACTTTTTGTATA
66 GCAGTAAAAATATACCGATTTAATGACAAAATGCATAAACATAAAGTTTCAATACTTTTTGTATA
* *
6941589 TGTATCGATACTTTTTGTCCAGTATGCTACCCAAATGAGATGCACGCAG
131 TGTATCGATACTTTTTGTCCAGTATGCTACCCAAACGAGATGCACCCAG
6941638 AAAGTATCGAT
1 AAAGTATCGAT
6941649 ACACGTATCA
Statistics
Matches: 171, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
179 170 0.99
180 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (179 bp):
AAAGTATCGATTCTTACAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAATATAA
GCAGTAAAAATATACCGATTTAATGACAAAATGCATAAACATAAAGTTTCAATACTTTTTGTATA
TGTATCGATACTTTTTGTCCAGTATGCTACCCAAACGAGATGCACCCAG
Found at i:6941646 original size:379 final size:379
Alignment explanation
Indices: 6941080--6941814 Score: 1125
Period size: 379 Copynumber: 1.9 Consensus size: 379
6941070 ACGCGTATCA
* * *
6941080 AAAGTATCGATTCTTACAACTTCGAAACCAATTACTTCTATGTAATAGGTAAATTTACAATGTCA
1 AAAGTATCGATTCTTACAACTTCGAAACCAATTACTTCTAAGTAATAGGTAAATTTACAATATAA
6941145 GCGGTAAAAATATACCAATTTAATGACAAAATGCGTAAACATAAAGTTTCGATACTTTTTGTATA
66 GCGGTAAAAATATACCAATTTAATGACAAAATGCGTAAACATAAAGTTTCGATACTTTTTGTATA
* *
6941210 TGTATCGATACTTTTTGTCTAGTATACTTCCCAAACAAGATGCACCTAGAAAGTATCGATACACG
131 TGTATCGATACTTTTTGTCCAGTATACTACCCAAACAAGATGCACCTAGAAAGTATCGATACACG
* * * *
6941275 TATCAAAAGTATTGATTCTTACAACTTCGAAACCGATTACTTTAAAGTAATAGGTAAATTTACAA
196 TATCAAAAGTATAGATTATTAAAACTTCAAAACCGATTACTTTAAAGTAATAGGTAAATTTACAA
* * *
6941340 TGTTAGCAGTAAAAATATATCGATTTAATGACAAAATTCATAAATATAAA-TGTTCAATACTTTT
261 TGTAAGCAGTAAAAATATATCGATTTAATGACAAAATACATAAACATAAAGT-TTCAATACTTTT
* **
6941404 TGTATATGTGTCGATACTTTTTTTCCAGTATGCTTCTCAAACGAGATGCACCCAG
325 TGTATATGTATCGATACTTTTGGTCCAGTATGCTTCTCAAACGAGATGCACCCAG
* * *
6941459 AAAGTATCGATTCTTACAACTTTGAAACCGATTACTT-TAAAGTAATAGGTAAATTTATAATATA
1 AAAGTATCGATTCTTACAACTTCGAAACCAATTACTTCT-AAGTAATAGGTAAATTTACAATATA
**
6941523 AGCGGTAAAAATATACCGGTTTAATGACAAAATGCGTAAACATAAAGTTTCGATACTTTTTGTAT
65 AGCGGTAAAAATATACCAATTTAATGACAAAATGCGTAAACATAAAGTTTCGATACTTTTTGTAT
* **
6941588 ATGTATCGATACTTTTTGTCCAGTATGCTACCCAAATGAGATGCACGC-AGAAAGTATCGATACA
130 ATGTATCGATACTTTTTGTCCAGTATACTACCCAAACAAGATGCAC-CTAGAAAGTATCGATACA
* ** *
6941652 CGTATCAAAATTATAGATTATTAAAACTTCAAAATTGATTACTTTAAAGTAATAGGTTAATTTAC
194 CGTATCAAAAGTATAGATTATTAAAACTTCAAAACCGATTACTTTAAAGTAATAGGTAAATTTAC
* * * * **
6941717 AATGTAAGCGGTAAAAATATATTGGTTTAATGACAAAATACGTAAACATAAAGTTTTGATACTTT
259 AATGTAAGCAGTAAAAATATATCGATTTAATGACAAAATACATAAACATAAAGTTTCAATACTTT
6941782 TTGTATATGTATCGATACTTTTGGTCCAGTATG
324 TTGTATATGTATCGATACTTTTGGTCCAGTATG
6941815 AAAACACTGA
Statistics
Matches: 320, Mismatches: 33, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
378 1 0.00
379 317 0.99
380 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (379 bp):
AAAGTATCGATTCTTACAACTTCGAAACCAATTACTTCTAAGTAATAGGTAAATTTACAATATAA
GCGGTAAAAATATACCAATTTAATGACAAAATGCGTAAACATAAAGTTTCGATACTTTTTGTATA
TGTATCGATACTTTTTGTCCAGTATACTACCCAAACAAGATGCACCTAGAAAGTATCGATACACG
TATCAAAAGTATAGATTATTAAAACTTCAAAACCGATTACTTTAAAGTAATAGGTAAATTTACAA
TGTAAGCAGTAAAAATATATCGATTTAATGACAAAATACATAAACATAAAGTTTCAATACTTTTT
GTATATGTATCGATACTTTTGGTCCAGTATGCTTCTCAAACGAGATGCACCCAG
Found at i:6944764 original size:6 final size:6
Alignment explanation
Indices: 6944753--6944822 Score: 79
Period size: 6 Copynumber: 11.7 Consensus size: 6
6944743 TTTATGCAGT
* * * *
6944753 TTTCAA TTTCAA TTTGAGA -TTGAA TTTCAA TTTCAA TTTCAA TTTGAG
1 TTTCAA TTTCAA TTTCA-A TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA
*
6944801 TTTGAA TTTCAA TTTCAA TTTC
1 TTTCAA TTTCAA TTTCAA TTTC
6944823 GGCTCCACTA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
5 1 0.02
6 54 0.96
7 1 0.02
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.50
Consensus pattern (6 bp):
TTTCAA
Found at i:6944780 original size:24 final size:24
Alignment explanation
Indices: 6944754--6944821 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 24
6944744 TTATGCAGTT
*
6944754 TTCAATTTCAATTTGAGA-TTGAAT
1 TTCAATTTCAATTTCA-ATTTGAAT
*
6944778 TTCAATTTCAATTTCAATTTGAGT
1 TTCAATTTCAATTTCAATTTGAAT
*
6944802 TTGAATTTCAATTTCAATTT
1 TTCAATTTCAATTTCAATTT
6944822 CGGCTCCACT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
23 1 0.03
24 39 0.98
ACGTcount: A:0.31, C:0.10, G:0.09, T:0.50
Consensus pattern (24 bp):
TTCAATTTCAATTTCAATTTGAAT
Found at i:6944789 original size:30 final size:30
Alignment explanation
Indices: 6944753--6944822 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
6944743 TTTATGCAGT
6944753 TTTCAATTTCAATTTGAGATTGAATTTCAA
1 TTTCAATTTCAATTTGAGATTGAATTTCAA
*
6944783 TTTCAATTTCAATTTGAGTTTGAATTTCAA
1 TTTCAATTTCAATTTGAGATTGAATTTCAA
6944813 TTTCAATTTC
1 TTTCAATTTC
6944823 GGCTCCACTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.50
Consensus pattern (30 bp):
TTTCAATTTCAATTTGAGATTGAATTTCAA
Found at i:6946514 original size:229 final size:226
Alignment explanation
Indices: 6946032--6946604 Score: 932
Period size: 229 Copynumber: 2.5 Consensus size: 226
6946022 TTAACCTACT
* * *
6946032 GATTTCTAAGAACCCATTAGCTTTAAAAAGGTGCTACCTATTACATTACATAAGCGCTACCTAAT
1 GATTTCTAAGGACCCATCAGCTTTAAAAAGGTGCTACCTATTACGTTACATAAGCGCTACCTAAT
*** *
6946097 ATGTTATTATGCTTGATAA-CAAATCAAGTAATTAACCGGTTATGTTATCGTCAGATTTCTAAGG
66 ATGTTATTATGCTTGATAATGTTA-CCAGTAATTAACCGGTTATGTTATCGTCAGATTTCTAAGG
*
6946161 CTCCATCAGCTTAAACTTTGGTAACATTTTAGGCGTTACCTAATATGTTAATAATACTGATAACA
130 CTCCATCAGCTTAAACTTTGGTAACACTTTAGGCGTTACCTAATATGTTAATAATACTGATAACA
6946226 AATTAAGTAATTAACCTATTTTGTTATCGTCG
195 AATTAAGTAATTAACCTATTTTGTTATCGTCG
** *
6946258 GATTTCTAAGGTTCCATCAGTTTTAAAAAGGTGCTACCTATTACGTTACATAAGCGCTACCTAAT
1 GATTTCTAAGGACCCATCAGCTTTAAAAAGGTGCTACCTATTACGTTACATAAGCGCTACCTAAT
*
6946323 ATGTTATTATGCTTGATAATGTTACCAGTAATTAACCGTTTATGTTATCGTCAGATTTCTAAGGC
66 ATGTTATTATGCTTGATAATGTTACCAGTAATTAACCGGTTATGTTATCGTCAGATTTCTAAGGC
*
6946388 TCCATCACCAGCTTAAACTTTGGTAACACTTTAGGCGTTACCTAATATGTTGATAATACTGATAA
131 TCCAT---CAGCTTAAACTTTGGTAACACTTTAGGCGTTACCTAATATGTTAATAATACTGATAA
*
6946453 TAAATTAAGTAATTAACCTATTTTGTTATCGTCG
193 CAAATTAAGTAATTAACCTATTTTGTTATCGTCG
* * *
6946487 GATTTCTAAGGCCCCATCAGCTTTAAAAAGGTGCAACCTATTACGTTACATAAGTGCTACCTAAT
1 GATTTCTAAGGACCCATCAGCTTTAAAAAGGTGCTACCTATTACGTTACATAAGCGCTACCTAAT
* *
6946552 TTGTTATTATGCTTGATAATGTTTCCAGTAATTAACCGGTTATGTTATCGTCA
66 ATGTTATTATGCTTGATAATGTTACCAGTAATTAACCGGTTATGTTATCGTCA
6946605 ATATTATTTT
Statistics
Matches: 321, Mismatches: 22, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
226 122 0.38
227 1 0.00
229 198 0.62
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (226 bp):
GATTTCTAAGGACCCATCAGCTTTAAAAAGGTGCTACCTATTACGTTACATAAGCGCTACCTAAT
ATGTTATTATGCTTGATAATGTTACCAGTAATTAACCGGTTATGTTATCGTCAGATTTCTAAGGC
TCCATCAGCTTAAACTTTGGTAACACTTTAGGCGTTACCTAATATGTTAATAATACTGATAACAA
ATTAAGTAATTAACCTATTTTGTTATCGTCG
Found at i:6946598 original size:118 final size:118
Alignment explanation
Indices: 6946231--6946603 Score: 362
Period size: 118 Copynumber: 3.2 Consensus size: 118
6946221 TAACAAATTA
* * ** * *
6946231 AGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGTTCCATCAGTTTTAAAAAGGTGCTACC
1 AGTAATTAACCGATTATGTTATCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGGTGCAACC
* *
6946296 TATTACGTTACATAAGCGCTACCTAATATGTTATTATGCTTGATAATGTTACC
66 TATTACGTTACATAAGTGCTACCTAATATGTTATTATGCTTGATAATGTTTCC
* * * **
6946349 AGTAATTAACCGTTTATGTTATCGTCAGATTTCTAAGGCTCCATCACCAGC-TTAAACTTTGGT-
1 AGTAATTAACCGATTATGTTATCGTCGGATTTCTAAGGC-CC--CATCAGCTTTAAA--AAGGTG
* * * ** *
6946412 -AACACT-TTA-G--GC----GT--TACCTAATATGTTGATAATAC-TGATAATAAATT-A
61 CAAC-CTATTACGTTACATAAGTGCTACCTAATATGTT-ATTATGCTTGATAAT-GTTTCC
* *
6946460 AGTAATTAACCTATTTTGTTATCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGGTGCAACC
1 AGTAATTAACCGATTATGTTATCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGGTGCAACC
*
6946525 TATTACGTTACATAAGTGCTACCTAATTTGTTATTATGCTTGATAATGTTTCC
66 TATTACGTTACATAAGTGCTACCTAATATGTTATTATGCTTGATAATGTTTCC
*
6946578 AGTAATTAACCGGTTATGTTATCGTC
1 AGTAATTAACCGATTATGTTATCGTC
6946604 AATATTATTT
Statistics
Matches: 196, Mismatches: 36, Indels: 46
0.71 0.13 0.17
Matches are distributed among these distances:
107 3 0.02
108 8 0.04
109 11 0.06
110 3 0.02
111 55 0.28
112 7 0.04
113 1 0.01
116 2 0.01
117 8 0.04
118 76 0.39
119 2 0.01
120 10 0.05
121 7 0.04
122 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (118 bp):
AGTAATTAACCGATTATGTTATCGTCGGATTTCTAAGGCCCCATCAGCTTTAAAAAGGTGCAACC
TATTACGTTACATAAGTGCTACCTAATATGTTATTATGCTTGATAATGTTTCC
Found at i:6949061 original size:253 final size:255
Alignment explanation
Indices: 6948611--6949119 Score: 972
Period size: 253 Copynumber: 2.0 Consensus size: 255
6948601 ATAACATTTC
6948611 GGATATATGCCGTTAGACAATCAGAAACACGATATTACGCATTGATTCCAAAAGAATAGATAGCA
1 GGATATATGCCGTTAGACAATCAGAAACACGATATTACGCATTGATTCCAAAAGAATAGATAGCA
6948676 ATGTCATCACTCACCAACCACAGTAATTAGATAAGATTTTATTGGATTGCATTTTAAATACAAGA
66 ATGTCATCACTCACCAACCACAGTAATTAGATAAGATTTTATTGGATTGCATTTTAAATACAAGA
6948741 AATGCACACAATAAATTAATAGTTATAAACGTACCTTAAGTGTTCTGCTTCTGAATACGGAAAAC
131 AATGCACACAATAAATTAATAGTTATAAACGTACCTTAAGTGTTCTGCTTCTGAATACGGAAAAC
6948806 TCTTAACTTTGTCATGATCCATAAGATCAAAATATATGTCC-TTTC-ATCTGTTCTAGAA
196 TCTTAACTTTGTCATGATCCATAAGATCAAAATATATGTCCTTTTCAATCTGTTCTAGAA
6948864 GGATATATGCCGTTAGACAATCAGAAACACGATATTACGCATTGATTCCAAAAGAATAGATAGCA
1 GGATATATGCCGTTAGACAATCAGAAACACGATATTACGCATTGATTCCAAAAGAATAGATAGCA
6948929 ATGTCATCACTCACCAACCACAGTAATTAGATAAGATTTTATTGGATTGCATTTTAAATACAAGA
66 ATGTCATCACTCACCAACCACAGTAATTAGATAAGATTTTATTGGATTGCATTTTAAATACAAGA
6948994 AATGCACACAATAAATTAATAGTTATAAACGGTACCTTAAG-GTGTCTGCTTCTGAATACGG-AA
131 AATGCACACAATAAATTAATAGTTATAAAC-GTACCTTAAGTGT-TCTGCTTCTGAATACGGAAA
6949057 ACTCTTAACTTTGTCATGATCCATAAGATCAAAATATATGTCCTTTTCAATCTGTTCTAGAA
194 ACTCTTAACTTTGTCATGATCCATAAGATCAAAATATATGTCCTTTTCAATCTGTTCTAGAA
6949119 G
1 G
6949120 ATCTTCATCT
Statistics
Matches: 252, Mismatches: 0, Indels: 6
0.98 0.00 0.02
Matches are distributed among these distances:
253 207 0.82
254 31 0.12
255 14 0.06
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (255 bp):
GGATATATGCCGTTAGACAATCAGAAACACGATATTACGCATTGATTCCAAAAGAATAGATAGCA
ATGTCATCACTCACCAACCACAGTAATTAGATAAGATTTTATTGGATTGCATTTTAAATACAAGA
AATGCACACAATAAATTAATAGTTATAAACGTACCTTAAGTGTTCTGCTTCTGAATACGGAAAAC
TCTTAACTTTGTCATGATCCATAAGATCAAAATATATGTCCTTTTCAATCTGTTCTAGAA
Found at i:6952559 original size:189 final size:189
Alignment explanation
Indices: 6952205--6952940 Score: 797
Period size: 189 Copynumber: 3.9 Consensus size: 189
6952195 TATAGTTTGT
* ** * * *
6952205 ATATAGCGGCGTTTTTTAATAAACGCCACAATAGAA-TAATACTTTCGCGGCGTTTTTTTGTA-A
1 ATATAGGGGCGTTTTTTAATAAACGCTGCAACA-AATTAGTACTTTAGCGGCG---TTTTG-ACA
* * * * * * * * * **
6952268 AATATGCTGCAATAGGGTTCACATATAGCAGCATTTTGGAAACAAACGCCGCAAATAATTCGTAA
61 AAAACGCCGCAATATGGTTCACATATAGCGGCGTTTTAGTAACAAACGCCGCAAATTATT-AAAA
* * * * *
6952333 T--TTAGT-GTCGTTTTGTCAAAAAACGCCGCAAATGTTTTTTATTTAAATGCCGTTAACTTTAG
125 TCATTAGTAG-CGTTTTGAC-AAAAACGCCGCAGATGTTTTTTATTTAAACGTCATTAACTTTAG
6952395 AC
188 AC
** * * * ** * ** *
6952397 ATATAACGGCGTGTTTTAATAAATGTTATAACAGATTAGTACTACAGCGGCGTTTTGACAAAAAT
1 ATATAGGGGCGTTTTTTAATAAACGCTGCAACAAATTAGTACTTTAGCGGCGTTTTGACAAAAAC
* * * * * *
6952462 GCCGCAAGAGGGTTAACATATAGTGGCGTTTTGGTAACAAACGCTGCAAATTATTAAAATCATTA
66 GCCGCAATATGGTTCACATATAGCGGCGTTTTAGTAACAAACGCCGCAAATTATTAAAATCATTA
* *
6952527 GTAGCATTTTGACAAAAACGCCGTAGATGTTTTTTATTTAAACGTCATTAACTTTAGAC
131 GTAGCGTTTTGACAAAAACGCCGCAGATGTTTTTTATTTAAACGTCATTAACTTTAGAC
*
6952586 ATATAGGGGCGTTTTTTAATAAACGGC-GCAACAAATTAGTACTTTAGTGGCGTTTTGACAAAAA
1 ATATAGGGGCGTTTTTTAATAAAC-GCTGCAACAAATTAGTACTTTAGCGGCGTTTTGACAAAAA
* *
6952650 CGTCGCAATATGGTTCACATATAGCGGCGTTTTAGTAACAAACGCCGTAAATTATTAAAATCATT
65 CGCCGCAATATGGTTCACATATAGCGGCGTTTTAGTAACAAACGCCGCAAATTATTAAAATCATT
* *
6952715 AGTAACGTTTTTACAAAAAAAAACGCCGCAGATG-TTTTTATTTAAACGTCATTAACTTTAGAC
130 AGTAGCGTTTTGAC----AAAAACGCCGCAGATGTTTTTTATTTAAACGTCATTAACTTTAGAC
*
6952778 ATATAGGGGCGTTTTTTAATAAACGCTGCAACAAATTAGTACTTTAGCGTCGTTTTGACAAAAAC
1 ATATAGGGGCGTTTTTTAATAAACGCTGCAACAAATTAGTACTTTAGCGGCGTTTTGACAAAAAC
* * ***
6952843 ACCGTAATATGGTTCACATATAGCGGCGTTTTAGTAACAAACGCCGCAAATTATTCGTA-CATTA
66 GCCGCAATATGGTTCACATATAGCGGCGTTTTAGTAACAAACGCCGCAAATTATTAAAATCATTA
* *
6952907 GTGGCGTTTTGGAAAAAAACGCCGCAGAT-TTTTT
131 GTAGCGTTTT-GACAAAAACGCCGCAGATGTTTTT
6952941 AACATTAGTT
Statistics
Matches: 463, Mismatches: 68, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
188 23 0.05
189 215 0.46
190 13 0.03
191 17 0.04
192 180 0.39
193 15 0.03
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (189 bp):
ATATAGGGGCGTTTTTTAATAAACGCTGCAACAAATTAGTACTTTAGCGGCGTTTTGACAAAAAC
GCCGCAATATGGTTCACATATAGCGGCGTTTTAGTAACAAACGCCGCAAATTATTAAAATCATTA
GTAGCGTTTTGACAAAAACGCCGCAGATGTTTTTTATTTAAACGTCATTAACTTTAGAC
Found at i:6953730 original size:7 final size:7
Alignment explanation
Indices: 6953706--6953749 Score: 63
Period size: 7 Copynumber: 6.3 Consensus size: 7
6953696 CAAAACGGTA
6953706 TCTCTTCT
1 TCTC-TCT
6953714 TCT-TCT
1 TCTCTCT
*
6953720 TCTCCCT
1 TCTCTCT
6953727 TCTCTCT
1 TCTCTCT
6953734 TCTCTCT
1 TCTCTCT
6953741 TCTCTCT
1 TCTCTCT
6953748 TC
1 TC
6953750 AACGACTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
6 6 0.18
7 24 0.73
8 3 0.09
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (7 bp):
TCTCTCT
Found at i:6961894 original size:43 final size:43
Alignment explanation
Indices: 6961848--6961952 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 43
6961838 TCTGTATACT
6961848 AAAACGCCGCTATATACCAGACCATCAGT-GGCGTTTATATCCTA
1 AAAACGCCGCTATATACCAGACCATCA-TCGGCGTTT-TATCCTA
** * * * * *
6961892 AAAACATCGCTATATACTAGATCTTTATCTGCGTTTTATCCTA
1 AAAACGCCGCTATATACCAGACCATCATCGGCGTTTTATCCTA
6961935 AAAACGCCGCTATATACC
1 AAAACGCCGCTATATACC
6961953 GAATTTTTAG
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
43 23 0.46
44 27 0.54
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (43 bp):
AAAACGCCGCTATATACCAGACCATCATCGGCGTTTTATCCTA
Found at i:6962058 original size:43 final size:43
Alignment explanation
Indices: 6961980--6962078 Score: 108
Period size: 43 Copynumber: 2.3 Consensus size: 43
6961970 TTTACACTAA
* * ** * ***
6961980 AAACGTCGCTAAATGTCAAAACCTATTGTGGCGTTTGTCTTAC
1 AAACGCCGCTAAATCTCAAAACCTATTACGACGTTTGTAAGAC
* *
6962023 AAACGCCGCTAACTCTCAAAACCTATTACGACGTTTTTAAGAC
1 AAACGCCGCTAAATCTCAAAACCTATTACGACGTTTGTAAGAC
6962066 AAACGCCGCTAAA
1 AAACGCCGCTAAA
6962079 GATCAGAACT
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAATCTCAAAACCTATTACGACGTTTGTAAGAC
Found at i:6962209 original size:37 final size:37
Alignment explanation
Indices: 6962156--6962260 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 37
6962146 CCTTTTCGTC
*
6962156 CTACTAGGATTCAAACTCCTAAAAATAGGATATAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * * *
6962193 TTGCTAGGATTCAAACTTCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * * *
6962230 CTACTATGATTTAAATTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
6962261 CCATAAGCAC
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.32
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:6967654 original size:60 final size:62
Alignment explanation
Indices: 6967589--6967709 Score: 228
Period size: 61 Copynumber: 2.0 Consensus size: 62
6967579 TCACATGAGT
6967589 GAAGACATCGAT-CAAAGGTGGACCAAATGGCAAGTACGAAGATCC-ATCAAGAACAAAAAA
1 GAAGACATCGATCCAAAGGTGGACCAAATGGCAAGTACGAAGATCCAATCAAGAACAAAAAA
6967649 GAAGACATCGATCCAAAGGTGGACCAAATGGCAAGTACGAAGATCCAATCAAGAACAAAAA
1 GAAGACATCGATCCAAAGGTGGACCAAATGGCAAGTACGAAGATCCAATCAAGAACAAAAA
6967710 GAAAAAAAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
60 12 0.20
61 33 0.56
62 14 0.24
ACGTcount: A:0.48, C:0.19, G:0.21, T:0.12
Consensus pattern (62 bp):
GAAGACATCGATCCAAAGGTGGACCAAATGGCAAGTACGAAGATCCAATCAAGAACAAAAAA
Found at i:6967728 original size:20 final size:20
Alignment explanation
Indices: 6967705--6967814 Score: 123
Period size: 20 Copynumber: 5.3 Consensus size: 20
6967695 AATCAAGAAC
6967705 AAAAAGAAAAAAAAAAAAAA
1 AAAAAGAAAAAAAAAAAAAA
*
6967725 AAAAA-AAGAAAAAAAGAAAA
1 AAAAAGAA-AAAAAAAAAAAA
6967745 AAAAAGAAAAAAAAAGAAAAA
1 AAAAAGAAAAAAAAA-AAAAA
* *
6967766 AAAGAGAAACAAAAGAAAAAA
1 AAAAAGAAA-AAAAAAAAAAA
* *
6967787 AGAAAGAAAAAAAATCAAAAAG
1 AAAAAGAAAAAAAA--AAAAAA
6967809 AAAAAG
1 AAAAAG
6967815 GGACAAAAAG
Statistics
Matches: 75, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
19 2 0.03
20 32 0.43
21 26 0.35
22 15 0.20
ACGTcount: A:0.86, C:0.02, G:0.11, T:0.01
Consensus pattern (20 bp):
AAAAAGAAAAAAAAAAAAAA
Found at i:6967746 original size:31 final size:30
Alignment explanation
Indices: 6967699--6967799 Score: 141
Period size: 30 Copynumber: 3.3 Consensus size: 30
6967689 AGATCCAATC
*
6967699 AAGAACAAAAAGAAAAAAAAAAAAAAAAAAA
1 AAGAA-AAAAAGAAAAAAAAAGAAAAAAAAA
6967730 AAGAAAAAAAGAAAAAAAAAGAAAAAAAAA
1 AAGAAAAAAAGAAAAAAAAAGAAAAAAAAA
* * *
6967760 GA-AAAAAAAGAGAAACAAAAGAAAAAAAGA
1 AAGAAAAAAAGA-AAAAAAAAGAAAAAAAAA
6967790 AAGAAAAAAA
1 AAGAAAAAAA
6967800 ATCAAAAAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
29 9 0.14
30 42 0.67
31 12 0.19
ACGTcount: A:0.87, C:0.02, G:0.11, T:0.00
Consensus pattern (30 bp):
AAGAAAAAAAGAAAAAAAAAGAAAAAAAAA
Found at i:6967780 original size:48 final size:46
Alignment explanation
Indices: 6967705--6967813 Score: 141
Period size: 48 Copynumber: 2.3 Consensus size: 46
6967695 AATCAAGAAC
*
6967705 AAAAAGAAAA-AAAAAAAAAAAAAAAAAGAAAAAAAGAAA-AAAAA
1 AAAAAAAAAAGAAAAAAAAAAAAAAAAAGAAAAAAAGAAAGAAAAA
*
6967749 AGAAAAAAAAAGAAAAAAAAGAGAAACAAAAGAAAAAAAGAAAGAAAAA
1 A-AAAAAAAAAGAAAAAAAA-A-AAAAAAAAGAAAAAAAGAAAGAAAAA
**
6967798 AAATCAAAAAGAAAAA
1 AAAAAAAAAAGAAAAA
6967814 GGGACAAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
44 1 0.02
45 8 0.14
46 8 0.14
47 1 0.02
48 32 0.57
49 6 0.11
ACGTcount: A:0.87, C:0.02, G:0.10, T:0.01
Consensus pattern (46 bp):
AAAAAAAAAAGAAAAAAAAAAAAAAAAAGAAAAAAAGAAAGAAAAA
Found at i:6967807 original size:28 final size:26
Alignment explanation
Indices: 6967711--6967813 Score: 102
Period size: 28 Copynumber: 3.8 Consensus size: 26
6967701 GAACAAAAAG
6967711 AAAAAAAA-AAAAAAAAAAAAAGAAA
1 AAAAAAAACAAAAAAAAAAAAAGAAA
*
6967736 AAAAGAAAAAAAAAGAAAAAAAAAGAAA
1 AAAA-AAAACAAAA-AAAAAAAAAGAAA
*
6967764 AAAAAGAGAA-ACAAAAGAAAAAAAGAAA
1 AAAAA-A-AACA-AAAAAAAAAAAAGAAA
*
6967792 GAAAAAAAATCAAAAAGAAAAA
1 -AAAAAAAA-CAAAAAAAAAAA
6967814 GGGACAAAAA
Statistics
Matches: 68, Mismatches: 1, Indels: 15
0.81 0.01 0.18
Matches are distributed among these distances:
25 4 0.06
26 4 0.06
27 7 0.10
28 42 0.62
29 11 0.16
ACGTcount: A:0.87, C:0.02, G:0.10, T:0.01
Consensus pattern (26 bp):
AAAAAAAACAAAAAAAAAAAAAGAAA
Found at i:6967813 original size:1 final size:1
Alignment explanation
Indices: 6967705--6967800 Score: 93
Period size: 1 Copynumber: 96.0 Consensus size: 1
6967695 AATCAAGAAC
* * * * * *
6967705 AAAAAGAAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAAAAAAGAAAAAAAAAGAAAAAAAAG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
6967770 AGAAACAAAAGAAAAAAAGAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6967801 TCAAAAAGAA
Statistics
Matches: 73, Mismatches: 22, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 73 1.00
ACGTcount: A:0.89, C:0.01, G:0.10, T:0.00
Consensus pattern (1 bp):
A
Found at i:6968491 original size:22 final size:22
Alignment explanation
Indices: 6968417--6968493 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
6968407 GCTACCCCAT
*
6968417 CAAACCGTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
*
6968439 CAAACCTATGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
6968461 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
*
6968483 CAAAACTTTGA
1 CAAACCTTTGA
6968494 CCAAACATAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.39, C:0.26, G:0.14, T:0.21
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:6969513 original size:106 final size:106
Alignment explanation
Indices: 6969306--6970668 Score: 1910
Period size: 106 Copynumber: 13.0 Consensus size: 106
6969296 ATATCGTGCC
* * * * ** *
6969306 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGA-CGACAGGTTGTCAA-CGACAATTTTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG-CTGGTTGTCAATAAACAACTTTC
* *
6969369 CAATTTCGGAGCCAATTTCAACTTTACAGCGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
6969411 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCC
6969476 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
6969517 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAC-TTCT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTC-
*
6969581 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
6969623 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCC
6969688 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
6969729 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCT-GTTGTC-A-ACA-AAC-TTCT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTC-
6969789 CAATTTCAGAGCCAATTTCAACTTCACA-CGAAGGATA-TGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
6969829 ACTCCAGACAACCGCTAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAC-TTC
1 ACTCCAGACAA-CGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTC
*
6969893 TCAATTTCAGAGCCAATTTC-ACTTCACAACGAAGG--ATTGG
65 -CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
6969933 ACTCCAGAAAACGCAAGTTCAACTTCACGACGAA-GGACCGCTGGTTGTC-ACAAACAA-TTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTT-C
*
6969995 CAATTTTAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
6970037 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAT-AACAA-TTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCC
6970100 AATTTCAGAGCCAATTTCAAC-TCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
6970140 ACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGAACCGCTGGTTGTCAACAAACAAC-TTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG-ACCGCTGGTTGTCAATAAACAACTTTC
* *
6970204 TCAATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
65 -CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
6970247 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAA-TTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTT-C
*
6970311 CAATTTCAGAGCCAATTTCAACTTCACAGCGTAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
6970353 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTTTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCC
* * *
6970418 AATTTCAGAGCCAATTTCAACTTCTCAGCGAAGGATCTTGA
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
6970459 AC-CCAAGGCAACACAAGCTCAACTTCACGACGAAGGGA-CGACTGATTGTCAAT-AA-AA-TTT
1 ACTCC-AGACAACGCAAGTTCAACTTCACGACGAAGGGACCG-CTGGTTGTCAATAAACAACTTT
* * *
6970519 --TA-TTCAGAGTCAATTTCAACTTCACATCGAAGGATATTGG
64 CCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * *
6970559 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGA-TGACTGGTTGTCAACAAATAA-TTTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG-CTGGTTGTCAATAAACAACTTT-
** * * *
6970622 CCGGTTCCAGAGCCAATTTCAACTGCAC-GACGGAGGATATTGG
64 CCAATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATATTGG
6970665 ACTC
1 ACTC
6970669 AGAACAATGC
Statistics
Matches: 1147, Mismatches: 74, Indels: 73
0.89 0.06 0.06
Matches are distributed among these distances:
100 91 0.08
101 73 0.06
102 72 0.06
103 82 0.07
104 100 0.09
105 120 0.10
106 550 0.48
107 59 0.05
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:6971443 original size:37 final size:37
Alignment explanation
Indices: 6971390--6971494 Score: 156
Period size: 37 Copynumber: 2.8 Consensus size: 37
6971380 CCTTTTCGTC
6971390 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
6971427 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
6971464 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
6971495 CCACAAGCAC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:6971975 original size:19 final size:19
Alignment explanation
Indices: 6971889--6971997 Score: 60
Period size: 19 Copynumber: 5.5 Consensus size: 19
6971879 TTTTTTACAC
* *
6971889 TATATA-TTATTATATATA
1 TATATATTTATTATTTTTA
* *
6971907 CATATATTTTTTATTTATT-
1 TATATATTTATTATTT-TTA
*
6971926 TATATTCATTTGGTTATTTTTTAA
1 TATA-T-ATTT-ATTA-TTTTT-A
6971950 TACTATATTTATTATTTTTA
1 TA-TATATTTATTATTTTTA
* * *
6971970 TATATATATATAATTTTTT
1 TATATATTTATTATTTTTA
*
6971989 TAAATATTT
1 TATATATTT
6971998 TACTTATAAG
Statistics
Matches: 70, Mismatches: 12, Indels: 17
0.71 0.12 0.17
Matches are distributed among these distances:
18 5 0.07
19 31 0.44
20 5 0.07
21 9 0.13
22 8 0.11
23 7 0.10
24 3 0.04
25 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (19 bp):
TATATATTTATTATTTTTA
Found at i:6971988 original size:21 final size:19
Alignment explanation
Indices: 6971942--6971995 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
6971932 CATTTGGTTA
*
6971942 TTTTTTAATACTATATTTAT
1 TTTTTTAATA-TATATTAAT
6971962 TATTTTTATATATATATATAAT
1 T-TTTTTA-ATATATAT-TAAT
6971984 TTTTTTAA-ATAT
1 TTTTTTAATATAT
6971996 TTTACTTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 4 0.13
20 2 0.07
21 17 0.57
22 7 0.23
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTTTAATATATATTAAT
Found at i:6972240 original size:2 final size:2
Alignment explanation
Indices: 6972233--6972266 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
6972223 TATTTTACTC
6972233 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6972267 TAATATTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6972302 original size:16 final size:16
Alignment explanation
Indices: 6972281--6972321 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
6972271 ATTTCATTTA
*
6972281 TTTATTTATTTTTCCT
1 TTTATTTATTTTTACT
6972297 TTTATTT-TTTTTACT
1 TTTATTTATTTTTACT
6972312 TATT-TTTATT
1 T-TTATTTATT
6972322 CTTCATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTATTTATTTTTACT
Found at i:6972339 original size:25 final size:24
Alignment explanation
Indices: 6972272--6972340 Score: 61
Period size: 25 Copynumber: 2.8 Consensus size: 24
6972262 TATATTAATA
*
6972272 TTTCATTTATTTATTTATTTTTCCT
1 TTTCATTT-TTTATTTATTTTTCAT
*
6972297 TTT-ATTTTTTTTACTTATTTTT-AT
1 TTTCA--TTTTTTATTTATTTTTCAT
6972321 TCTTCATTTTTTCATTTATT
1 T-TTCATTTTTT-ATTTATT
6972341 CATTTTTCCC
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
24 9 0.25
25 23 0.64
26 4 0.11
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTCATTTTTTATTTATTTTTCAT
Found at i:6973214 original size:41 final size:41
Alignment explanation
Indices: 6973169--6973249 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
6973159 GAGGCATTTG
*
6973169 TTTAGAAACACCACTAAAGTAAGATTATCTGTCGGCGTTTA
1 TTTAGAAACACCACTAAAGTAAGATTATCTGGCGGCGTTTA
* * *
6973210 TTTAGAAACGCCACTAGAGTAAGATTCTCTGGCGGCGTTT
1 TTTAGAAACACCACTAAAGTAAGATTATCTGGCGGCGTTT
6973250 TGATGTGATC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31
Consensus pattern (41 bp):
TTTAGAAACACCACTAAAGTAAGATTATCTGGCGGCGTTTA
Found at i:6977524 original size:15 final size:15
Alignment explanation
Indices: 6977504--6977533 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6977494 TTTTTTATAA
6977504 AATATTTTAATTTTT
1 AATATTTTAATTTTT
6977519 AATATTTTAATTTTT
1 AATATTTTAATTTTT
6977534 GGTCAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
AATATTTTAATTTTT
Found at i:6977721 original size:18 final size:18
Alignment explanation
Indices: 6977688--6977724 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
6977678 GTAATTGAGC
**
6977688 ATATGTGATCGGTCAATA
1 ATATGTGATCACTCAATA
6977706 ATATGTGATCACTCAATA
1 ATATGTGATCACTCAATA
6977724 A
1 A
6977725 CATATATTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (18 bp):
ATATGTGATCACTCAATA
Found at i:6978315 original size:23 final size:23
Alignment explanation
Indices: 6978289--6978332 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
6978279 CATAATAACA
6978289 TAATAAGTAGCG-CTTATTTAATG
1 TAATAAGTAGCGTCTT-TTTAATG
*
6978312 TAATATGTAGCGTCTTTTTAA
1 TAATAAGTAGCGTCTTTTTAA
6978333 AGCTGATGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (23 bp):
TAATAAGTAGCGTCTTTTTAATG
Found at i:6978535 original size:86 final size:86
Alignment explanation
Indices: 6978356--6978522 Score: 217
Period size: 87 Copynumber: 1.9 Consensus size: 86
6978346 TTAGAAATCT
* **
6978356 GACGATAACAAAATAAGTTAATTACTTAATTTGTTATAATATTATCAACATATTTTGTAACACCT
1 GACGATAACAAAATAAGTTAATTACTTAATTTGTTATAACATTATCAACATATTAGGTAACACCT
* **
6978421 AAAATATTATCAAAGAAATCC
66 AAAATATTAACAAAGAAATAA
* * * * *
6978442 GACGATAACAAAATAGGTTAATTACTTATTTTTTTATTAACATTATCAACATATTAGGTAGCGCC
1 GACGATAACAAAATAAGTTAATTACTTAATTTGTTA-TAACATTATCAACATATTAGGTAACACC
*
6978507 TAAAATGTTAACAAAG
65 TAAAATATTAACAAAG
6978523 TTTAAGCTGA
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
86 33 0.47
87 37 0.53
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.35
Consensus pattern (86 bp):
GACGATAACAAAATAAGTTAATTACTTAATTTGTTATAACATTATCAACATATTAGGTAACACCT
AAAATATTAACAAAGAAATAA
Found at i:6978824 original size:17 final size:17
Alignment explanation
Indices: 6978799--6978834 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
6978789 TTAGAGTAAG
6978799 TATGAATACATTATTAT
1 TATGAATACATTATTAT
*
6978816 TATGGATACATTATTAT
1 TATGAATACATTATTAT
6978833 TA
1 TA
6978835 ACCTTTAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (17 bp):
TATGAATACATTATTAT
Found at i:6979019 original size:23 final size:22
Alignment explanation
Indices: 6978963--6979006 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
6978953 TAAACCGGTA
6978963 GCTAGTTTAACGTAATAGGTAAC
1 GCTA-TTTAACGTAATAGGTAAC
*
6978986 ACTTATTTAACGTAATAGGTA
1 GC-TATTTAACGTAATAGGTA
6979007 GTGGCTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (22 bp):
GCTATTTAACGTAATAGGTAAC
Found at i:6979122 original size:76 final size:75
Alignment explanation
Indices: 6979038--6979184 Score: 240
Period size: 76 Copynumber: 1.9 Consensus size: 75
6979028 TAAGCAGCGT
* *
6979038 CTATTTTATTTTACCGTTTACATTATTAGTAACCTTTAAACAAACTGGTAGATATTTTTAACGTA
1 CTATTTTATTTTACCGTTTACATTATTAGTAACCTTTAAACAAACTAGTAGATA-GTTTAACGTA
6979103 ATAGGTAACGC
65 ATAGGTAACGC
* * *
6979114 CTATTTTATTTTACTGTTTACATTATTATTAACCTTTAAACAAACTAGTAGCTAGTTTAACGTAA
1 CTATTTTATTTTACCGTTTACATTATTAGTAACCTTTAAACAAACTAGTAGATAGTTTAACGTAA
6979179 TAGGTA
66 TAGGTA
6979185 GTGCATATTT
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
75 16 0.24
76 50 0.76
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (75 bp):
CTATTTTATTTTACCGTTTACATTATTAGTAACCTTTAAACAAACTAGTAGATAGTTTAACGTAA
TAGGTAACGC
Found at i:6979195 original size:23 final size:23
Alignment explanation
Indices: 6979169--6979240 Score: 117
Period size: 23 Copynumber: 3.1 Consensus size: 23
6979159 TAGTAGCTAG
* *
6979169 TTTAACGTAATAGGTAGTGCATA
1 TTTAACATAATAGGTAGCGCATA
6979192 TTTAACATAATAGGTAGCGCATA
1 TTTAACATAATAGGTAGCGCATA
*
6979215 TTTAACATAATAGGTAGCGCCTA
1 TTTAACATAATAGGTAGCGCATA
6979238 TTT
1 TTT
6979241 TATTTTACCG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (23 bp):
TTTAACATAATAGGTAGCGCATA
Found at i:6979293 original size:53 final size:53
Alignment explanation
Indices: 6979235--6979337 Score: 170
Period size: 53 Copynumber: 1.9 Consensus size: 53
6979225 TAGGTAGCGC
* * *
6979235 CTATTTTATTTTACCGTTTACATTATTAGTAATTTTTAAACAAACCGATAAGT
1 CTATTTTATTTCACCGTTTACATTATTAGTAATCTTCAAACAAACCGATAAGT
*
6979288 CTATTTTATTTCACCGTTTACATTATTAGTAATCTTCAAATAAACCGATA
1 CTATTTTATTTCACCGTTTACATTATTAGTAATCTTCAAACAAACCGATA
6979338 GGTAGTTTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.34, C:0.16, G:0.07, T:0.44
Consensus pattern (53 bp):
CTATTTTATTTCACCGTTTACATTATTAGTAATCTTCAAACAAACCGATAAGT
Found at i:6981160 original size:18 final size:18
Alignment explanation
Indices: 6981134--6981174 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
6981124 AAAATTAATT
6981134 AAAAA-AAT-AAAAATAA
1 AAAAATAATAAAAAATAA
6981150 AAGAAATAATAAAAAATAA
1 AA-AAATAATAAAAAATAA
6981169 AAAAAT
1 AAAAAT
6981175 TATTATTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.09
17 3 0.14
18 7 0.32
19 10 0.45
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.15
Consensus pattern (18 bp):
AAAAATAATAAAAAATAA
Found at i:6982076 original size:85 final size:85
Alignment explanation
Indices: 6981928--6982109 Score: 274
Period size: 85 Copynumber: 2.1 Consensus size: 85
6981918 CGTGTGACAC
*
6981928 TAAAACCCTAAAATCTTGCACATATAAACCATTAGATTGGTTCAGATCCAACGGATCTGATGATG
1 TAAAACCCTAAAATCTTGCACATATAAACCATTAGATTGGTTCAGATCCAACGGATCTAATGATG
6981993 CAGCGCTAATATCAAAAGGG
66 CAGCGCTAATATCAAAAGGG
** * * * * *
6982013 TAAAACCCTATGATCTTGCACATGTAGACCGTTGGATTGGTTCATATCCAACGGATCTAATGATG
1 TAAAACCCTAAAATCTTGCACATATAAACCATTAGATTGGTTCAGATCCAACGGATCTAATGATG
* *
6982078 CAGCGTTGATATCAAAAGGG
66 CAGCGCTAATATCAAAAGGG
6982098 TAAAACCCTAAA
1 TAAAACCCTAAA
6982110 CACATATGGG
Statistics
Matches: 85, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (85 bp):
TAAAACCCTAAAATCTTGCACATATAAACCATTAGATTGGTTCAGATCCAACGGATCTAATGATG
CAGCGCTAATATCAAAAGGG
Found at i:6982276 original size:10 final size:10
Alignment explanation
Indices: 6982239--6982297 Score: 63
Period size: 9 Copynumber: 6.3 Consensus size: 10
6982229 AAGGGAAAAA
6982239 ATAAAATAA-
1 ATAAAATAAT
6982248 ATAAAATAA-
1 ATAAAATAAT
*
6982257 A-AACATAAT
1 ATAAAATAAT
6982266 ATAAAATAAT
1 ATAAAATAAT
*
6982276 AT-ATATAAT
1 ATAAAATAAT
*
6982285 ATAATATAAT
1 ATAAAATAAT
6982295 ATA
1 ATA
6982298 TGTACAATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
8 6 0.14
9 19 0.43
10 19 0.43
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (10 bp):
ATAAAATAAT
Found at i:6982279 original size:12 final size:14
Alignment explanation
Indices: 6982264--6982322 Score: 59
Period size: 14 Copynumber: 4.2 Consensus size: 14
6982254 TAAAAACATA
*
6982264 ATATAAAATAATAT
1 ATATAATATAATAT
6982278 ATATAATATAATAT
1 ATATAATATAATAT
* *
6982292 AATATATGTACAATAT
1 -ATATA-ATATAATAT
6982308 A-AT-ATATAATAT
1 ATATAATATAATAT
6982320 ATA
1 ATA
6982323 ACATATATAC
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
12 8 0.22
13 1 0.03
14 15 0.41
15 6 0.16
16 7 0.19
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (14 bp):
ATATAATATAATAT
Found at i:6982283 original size:27 final size:29
Alignment explanation
Indices: 6982239--6982297 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 29
6982229 AAGGGAAAAA
6982239 ATAAAATAAATAAAATAA-A-AACATAAT
1 ATAAAATAAATAAAATAATATAACATAAT
* *
6982266 ATAAAAT-AATATATATAATATAATATAAT
1 ATAAAATAAATA-AAATAATATAACATAAT
6982295 ATA
1 ATA
6982298 TGTACAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 4 0.15
27 12 0.44
28 1 0.04
29 10 0.37
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.31
Consensus pattern (29 bp):
ATAAAATAAATAAAATAATATAACATAAT
Found at i:6982286 original size:7 final size:7
Alignment explanation
Indices: 6982261--6982329 Score: 52
Period size: 7 Copynumber: 9.4 Consensus size: 7
6982251 AAATAAAAAC
6982261 ATAATAT
1 ATAATAT
*
6982268 AAAATAAT
1 ATAAT-AT
6982276 ATATATAAT
1 ATA-AT-AT
6982285 ATAATAT
1 ATAATAT
6982292 A-ATATAT
1 ATA-ATAT
*
6982299 GTACA-AT
1 ATA-ATAT
6982306 ATAATAT
1 ATAATAT
6982313 ATAATAT
1 ATAATAT
*
6982320 ATAACAT
1 ATAATAT
6982327 ATA
1 ATA
6982330 TACATGTATC
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
6 2 0.04
7 33 0.65
8 8 0.16
9 8 0.16
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (7 bp):
ATAATAT
Found at i:6982320 original size:5 final size:5
Alignment explanation
Indices: 6982261--6982313 Score: 63
Period size: 5 Copynumber: 10.6 Consensus size: 5
6982251 AAATAAAAAC
* * *
6982261 ATAAT ATAAA ATAAT AT-AT ATAAT ATAAT ATAAT ATATGT ACAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT ATAAT ATAAT
6982311 ATA
1 ATA
6982314 TAATATATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
4 4 0.10
5 33 0.82
6 3 0.08
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:6982406 original size:40 final size:39
Alignment explanation
Indices: 6982362--6982465 Score: 122
Period size: 38 Copynumber: 2.7 Consensus size: 39
6982352 TCTATATAAT
* **
6982362 ATGTTTTTCAAAAAATATATATTATATATGTTTTTGAAAA
1 ATGTTTTTC-AAAAATATATATTATATATATTTTCAAAAA
*
6982402 ATG-TTTTCAAAATTATATATTATATATATTTTCAAAAA
1 ATGTTTTTCAAAAATATATATTATATATATTTTCAAAAA
* *
6982440 ATGTTTTTTTAAAACTATATA-TATAT
1 ATG-TTTTTCAAAAATATATATTATAT
6982466 GTTTTAAAAC
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
38 29 0.52
39 10 0.18
40 17 0.30
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (39 bp):
ATGTTTTTCAAAAATATATATTATATATATTTTCAAAAA
Found at i:6982472 original size:21 final size:22
Alignment explanation
Indices: 6982446--6982487 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
6982436 AAAAATGTTT
6982446 TTTTAAAACTATATAT-ATATG
1 TTTTAAAACTATATATCATATG
6982467 TTTTAAAACTATATATCATAT
1 TTTTAAAACTATATATCATAT
6982488 ATGTTTTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTTAAAACTATATATCATATG
Done.