Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008620.1 Hibiscus syriacus cultivar Beakdansim tig00111582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13158977
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 39 of 64
Found at i:7885375 original size:20 final size:20
Alignment explanation
Indices: 7885350--7885389 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7885340 AATAGTTTCT
7885350 AAAACTTAAAATCGCAACAC
1 AAAACTTAAAATCGCAACAC
7885370 AAAACTTAAAATCGCAACAC
1 AAAACTTAAAATCGCAACAC
7885390 GAAATGATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.25, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAACTTAAAATCGCAACAC
Found at i:7885456 original size:33 final size:33
Alignment explanation
Indices: 7885399--7885479 Score: 117
Period size: 33 Copynumber: 2.4 Consensus size: 33
7885389 CGAAATGATT
* * *
7885399 ATCGCAATGCGAATTTGACTATCGCAACGAGATA
1 ATCGCAACGCGAA-ATGACTATCGCAACGAGAAA
7885433 ATCGCAACGCGAAATGACTATCGCAACGAGAAA
1 ATCGCAACGCGAAATGACTATCGCAACGAGAAA
*
7885466 ATCGCAACGTGAAA
1 ATCGCAACGCGAAA
7885480 CCAAAATCGC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 31 0.72
34 12 0.28
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.17
Consensus pattern (33 bp):
ATCGCAACGCGAAATGACTATCGCAACGAGAAA
Found at i:7885460 original size:19 final size:19
Alignment explanation
Indices: 7885380--7885465 Score: 74
Period size: 19 Copynumber: 4.7 Consensus size: 19
7885370 AAAACTTAAA
* *
7885380 ATCGCAACACGAAATGATT
1 ATCGCAACGCGAAATGACT
* *
7885399 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAA-ATGACT
*
7885419 ATCGCAA--CGAGAT-A--
1 ATCGCAACGCGAAATGACT
7885433 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
7885452 ATCGCAACGAGAAA
1 ATCGCAACGCGAAA
7885466 ATCGCAACGT
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
14 7 0.13
16 6 0.11
17 2 0.04
18 3 0.06
19 24 0.45
20 11 0.21
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.19
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:7885479 original size:14 final size:14
Alignment explanation
Indices: 7885419--7885479 Score: 50
Period size: 14 Copynumber: 4.0 Consensus size: 14
7885409 GAATTTGACT
*
7885419 ATCGCAACGAGATA
1 ATCGCAACGAGAAA
*
7885433 ATCGCAACGCGAAATGA
1 ATCGCAACGAG-AA--A
7885450 CTATCGCAACGAGAAA
1 --ATCGCAACGAGAAA
*
7885466 ATCGCAACGTGAAA
1 ATCGCAACGAGAAA
7885480 CCAAAATCGC
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
14 23 0.61
15 1 0.03
16 1 0.03
17 1 0.03
18 2 0.05
19 10 0.26
ACGTcount: A:0.43, C:0.23, G:0.21, T:0.13
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:7885489 original size:33 final size:33
Alignment explanation
Indices: 7885419--7885498 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
7885409 GAATTTGACT
* ** **
7885419 ATCGCAACGAGATAATCGCAACGCGAAATGACT
1 ATCGCAACGAGAAAATCGCAACGCGAAACCAAA
*
7885452 ATCGCAACGAGAAAATCGCAACGTGAAACCAAA
1 ATCGCAACGAGAAAATCGCAACGCGAAACCAAA
*
7885485 ATCGCAACGCGAAA
1 ATCGCAACGAGAAA
7885499 CTAAATTCGC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.44, C:0.25, G:0.20, T:0.11
Consensus pattern (33 bp):
ATCGCAACGAGAAAATCGCAACGCGAAACCAAA
Found at i:7885508 original size:19 final size:19
Alignment explanation
Indices: 7885463--7885499 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7885453 TCGCAACGAG
*
7885463 AAAATCGCAACGTGAAACC
1 AAAATCGCAACGCGAAACC
7885482 AAAATCGCAACGCGAAAC
1 AAAATCGCAACGCGAAAC
7885500 TAAATTCGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.27, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAATCGCAACGCGAAACC
Found at i:7885656 original size:54 final size:54
Alignment explanation
Indices: 7885562--7885664 Score: 134
Period size: 54 Copynumber: 1.9 Consensus size: 54
7885552 GTCAACTTCG
** * ***
7885562 CGTTGCGATAGTCATTTTCGCGTTGCGATAGTCGTTTTCGCATTGCGATTATCC
1 CGTTGCGATAGTCAAATTCGCGTTGCAATAGTCAAATTCGCATTGCGATTATCC
* *
7885616 CGTTGCGATAGTCAAATTCGCGTTGCAATATTCAAATTCGCGTTGCGAT
1 CGTTGCGATAGTCAAATTCGCGTTGCAATAGTCAAATTCGCATTGCGAT
7885665 AATCATTTTC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 41 1.00
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.36
Consensus pattern (54 bp):
CGTTGCGATAGTCAAATTCGCGTTGCAATAGTCAAATTCGCATTGCGATTATCC
Found at i:7885675 original size:20 final size:20
Alignment explanation
Indices: 7885504--7885683 Score: 114
Period size: 20 Copynumber: 9.6 Consensus size: 20
7885494 CGAAACTAAA
7885504 TTCGCGTTGCGATAGTCATT
1 TTCGCGTTGCGATAGTCATT
**
7885524 TTCGTATTGCGAT--T-A--
1 TTCGCGTTGCGATAGTCATT
* * * **
7885539 -TCCCATTGGGATAGTCAAC
1 TTCGCGTTGCGATAGTCATT
7885558 TTCGCGTTGCGATAGTCATT
1 TTCGCGTTGCGATAGTCATT
*
7885578 TTCGCGTTGCGATAGTCGTT
1 TTCGCGTTGCGATAGTCATT
*
7885598 TTCGCATTGCGAT--T-A--
1 TTCGCGTTGCGATAGTCATT
* **
7885613 -TCCCGTTGCGATAGTCAAA
1 TTCGCGTTGCGATAGTCATT
* * **
7885632 TTCGCGTTGCAATATTCAAA
1 TTCGCGTTGCGATAGTCATT
*
7885652 TTCGCGTTGCGATAATCATT
1 TTCGCGTTGCGATAGTCATT
*
7885672 TTCGTGTTGCGA
1 TTCGCGTTGCGA
7885684 CTATTCTTCT
Statistics
Matches: 125, Mismatches: 23, Indels: 24
0.73 0.13 0.14
Matches are distributed among these distances:
14 19 0.15
16 2 0.02
17 3 0.02
18 2 0.02
20 99 0.79
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (20 bp):
TTCGCGTTGCGATAGTCATT
Found at i:7885682 original size:74 final size:74
Alignment explanation
Indices: 7885501--7885683 Score: 267
Period size: 74 Copynumber: 2.5 Consensus size: 74
7885491 ACGCGAAACT
* *
7885501 AAATTCGCGTTGCGATAGTCATTTTCGTATTGCGATTATCCCATTGGGATAGTCAACTTCGCGTT
1 AAATTCGCGTTGCGATAGTCATTTTCGTATTGCGATTATCCCATTGCGATAGTCAAATTCGCGTT
*
7885566 GCGATAGTC
66 GCAATAGTC
** * * *
7885575 ATTTTCGCGTTGCGATAGTCGTTTTCGCATTGCGATTATCCCGTTGCGATAGTCAAATTCGCGTT
1 AAATTCGCGTTGCGATAGTCATTTTCGTATTGCGATTATCCCATTGCGATAGTCAAATTCGCGTT
*
7885640 GCAATATTC
66 GCAATAGTC
* *
7885649 AAATTCGCGTTGCGATAATCATTTTCGTGTTGCGA
1 AAATTCGCGTTGCGATAGTCATTTTCGTATTGCGA
7885684 CTATTCTTCT
Statistics
Matches: 94, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
74 94 1.00
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (74 bp):
AAATTCGCGTTGCGATAGTCATTTTCGTATTGCGATTATCCCATTGCGATAGTCAAATTCGCGTT
GCAATAGTC
Found at i:7887715 original size:20 final size:20
Alignment explanation
Indices: 7887692--7887732 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7887682 TCTGAAACTT
* *
7887692 AAAATCGTAACACGAAAATG
1 AAAATCGCAAAACGAAAATG
7887712 AAAATCGCAAAACGAAAATG
1 AAAATCGCAAAACGAAAATG
7887732 A
1 A
7887733 TTAGCGCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.59, C:0.15, G:0.15, T:0.12
Consensus pattern (20 bp):
AAAATCGCAAAACGAAAATG
Found at i:7887747 original size:20 final size:20
Alignment explanation
Indices: 7887704--7887786 Score: 69
Period size: 20 Copynumber: 4.2 Consensus size: 20
7887694 AATCGTAACA
** **
7887704 CGAAAATGAAAATCGCAAAA
1 CGAAAATGATTATCGCAACG
*
7887724 CGAAAATGATTAGCGCAACG
1 CGAAAATGATTATCGCAACG
** * *
7887744 CGAATTTAACTATCGCAACG
1 CGAAAATGATTATCGCAACG
*
7887764 CG-AAATGGTTATCGCAACG
1 CGAAAATGATTATCGCAACG
7887783 CGAA
1 CGAA
7887787 TTTTGTCGTT
Statistics
Matches: 47, Mismatches: 15, Indels: 2
0.73 0.23 0.03
Matches are distributed among these distances:
19 14 0.30
20 33 0.70
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.17
Consensus pattern (20 bp):
CGAAAATGATTATCGCAACG
Found at i:7888149 original size:22 final size:22
Alignment explanation
Indices: 7888123--7888199 Score: 100
Period size: 22 Copynumber: 3.5 Consensus size: 22
7888113 GGAGATAGAT
*
7888123 GGATTTCGCCAGAGATGGGGAC
1 GGATTTCGCCGGAGATGGGGAC
*
7888145 GGATTTCGCCGGAAATGGGGAC
1 GGATTTCGCCGGAGATGGGGAC
* **
7888167 AGATTTCATCGGAGATGGGGAC
1 GGATTTCGCCGGAGATGGGGAC
*
7888189 GGATGTCGCCG
1 GGATTTCGCCG
7888200 TAGAGAGTGA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.22, C:0.18, G:0.40, T:0.19
Consensus pattern (22 bp):
GGATTTCGCCGGAGATGGGGAC
Found at i:7888386 original size:20 final size:20
Alignment explanation
Indices: 7888361--7888466 Score: 151
Period size: 20 Copynumber: 5.2 Consensus size: 20
7888351 TTTTCGCAAC
*
7888361 GCGATAGTCAGAATCTCGTT
1 GCGATAGTCAGAATCGCGTT
7888381 GCGATAGTCAGAATCGCGTT
1 GCGATAGTCAGAATCGCGTT
**
7888401 GCGATCACGT-ATTATCGCGTT
1 GCGAT-A-GTCAGAATCGCGTT
*
7888422 GCGATAGTCCGAATCGCGTT
1 GCGATAGTCAGAATCGCGTT
7888442 GCGATAGTCAGAATCGCGTT
1 GCGATAGTCAGAATCGCGTT
7888462 GCGAT
1 GCGAT
7888467 CACGTGTTAT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
19 2 0.03
20 57 0.75
21 15 0.20
22 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (20 bp):
GCGATAGTCAGAATCGCGTT
Found at i:7888428 original size:61 final size:61
Alignment explanation
Indices: 7888361--7888487 Score: 218
Period size: 61 Copynumber: 2.1 Consensus size: 61
7888351 TTTTCGCAAC
*
7888361 GCGATAGTCAGAATCTCGTTGCGATAGTCAGAATCGCGTTGCGATCACGTATTATCGCGTT
1 GCGATAGTCAGAATCGCGTTGCGATAGTCAGAATCGCGTTGCGATCACGTATTATCGCGTT
* * *
7888422 GCGATAGTCCGAATCGCGTTGCGATAGTCAGAATCGCGTTGCGATCACGTGTTATCTCGTT
1 GCGATAGTCAGAATCGCGTTGCGATAGTCAGAATCGCGTTGCGATCACGTATTATCGCGTT
7888483 GCGAT
1 GCGAT
7888488 TTACATATTC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (61 bp):
GCGATAGTCAGAATCGCGTTGCGATAGTCAGAATCGCGTTGCGATCACGTATTATCGCGTT
Found at i:7888506 original size:20 final size:20
Alignment explanation
Indices: 7888481--7888528 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
7888471 TGTTATCTCG
7888481 TTGCGATTTACATATTCGCA
1 TTGCGATTTACATATTCGCA
7888501 TTGCGATTTACATATTCGCA
1 TTGCGATTTACATATTCGCA
7888521 TTGCGATT
1 TTGCGATT
7888529 ATCTAAAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.42
Consensus pattern (20 bp):
TTGCGATTTACATATTCGCA
Found at i:7888638 original size:19 final size:19
Alignment explanation
Indices: 7888614--7888650 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7888604 TGCGATAATG
*
7888614 GAGATCGCGTTGCGATTTA
1 GAGATCGCATTGCGATTTA
*
7888633 GAGATCGTATTGCGATTT
1 GAGATCGCATTGCGATTT
7888651 TGTTGGTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.35
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:7890354 original size:29 final size:29
Alignment explanation
Indices: 7890322--7890648 Score: 308
Period size: 29 Copynumber: 11.2 Consensus size: 29
7890312 TATTAATTTG
*
7890322 ATTTATAAAA-TTTCTGGGCCATTATTGTA
1 ATTTATAAAAGTTT-TGGGCCATTGTTGTA
* * *
7890351 ATTTGTTAAAGTTTTGGGCCA---ATG--
1 ATTTATAAAAGTTTTGGGCCATTGTTGTA
* *
7890375 -TTTGTAAAAGGTTTGGGCCATTGTTGTA
1 ATTTATAAAAGTTTTGGGCCATTGTTGTA
* * * *
7890403 ATTTGTTAAAGTTTTGGGTCAAAATGTTGTA
1 ATTTATAAAAGTTTTGGG-C-CATTGTTGTA
* *
7890434 GTTTGTAAAAGTTTTGGGCCATTGTTGTA
1 ATTTATAAAAGTTTTGGGCCATTGTTGTA
* *
7890463 ATTTATAAAAGTTTTGGGCCTTTGTTTTA
1 ATTTATAAAAGTTTTGGGCCATTGTTGTA
*
7890492 ATTTATTAAAGTTTTGGGCCAACGCCATTGTTGTA
1 ATTTATAAAAGTTTT-GG-----GCCATTGTTGTA
7890527 ATTTATAAAAGTTTTGGGCCATTGTTGTA
1 ATTTATAAAAGTTTTGGGCCATTGTTGTA
* * *
7890556 ATTTATAAAAGTTTTGGTCTATTGTTGAA
1 ATTTATAAAAGTTTTGGGCCATTGTTGTA
*
7890585 ATTTATAAAAGTTTTGGGTCATTGTTGTA
1 ATTTATAAAAGTTTTGGGCCATTGTTGTA
* ** * *
7890614 ATTTGTAAAAGTTTTGAACAATTATTGTA
1 ATTTATAAAAGTTTTGGGCCATTGTTGTA
7890643 ATTTAT
1 ATTTAT
7890649 TTGGGTAACT
Statistics
Matches: 247, Mismatches: 36, Indels: 30
0.79 0.12 0.10
Matches are distributed among these distances:
23 18 0.07
26 4 0.02
29 168 0.68
30 7 0.03
31 24 0.10
34 2 0.01
35 24 0.10
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.46
Consensus pattern (29 bp):
ATTTATAAAAGTTTTGGGCCATTGTTGTA
Found at i:7890393 original size:52 final size:54
Alignment explanation
Indices: 7890336--7890482 Score: 181
Period size: 60 Copynumber: 2.6 Consensus size: 54
7890326 ATAAAATTTC
*
7890336 TGGGCCATTATTGTAATTTGTTAAAGTTTTGGGCCAA-T-GTTTGTAAAAGGTT
1 TGGGCCATTGTTGTAATTTGTTAAAGTTTTGGGCCAATTAGTTTGTAAAAGGTT
* *
7890388 TGGGCCATTGTTGTAATTTGTTAAAGTTTTGGGTCAAAATGTTGTAGTTTGTAAAAGTTT
1 TGGGCCATTGTTGTAATTTGTTAAAGTTTTGGG-C-CAA---T-TAGTTTGTAAAAGGTT
* *
7890448 TGGGCCATTGTTGTAATTTATAAAAGTTTTGGGCC
1 TGGGCCATTGTTGTAATTTGTTAAAGTTTTGGGCC
7890483 TTTGTTTTAA
Statistics
Matches: 81, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
52 32 0.40
53 1 0.01
54 2 0.02
59 2 0.02
60 44 0.54
ACGTcount: A:0.24, C:0.07, G:0.25, T:0.43
Consensus pattern (54 bp):
TGGGCCATTGTTGTAATTTGTTAAAGTTTTGGGCCAATTAGTTTGTAAAAGGTT
Found at i:7890401 original size:22 final size:23
Alignment explanation
Indices: 7890352--7890403 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
7890342 ATTATTGTAA
* *
7890352 TTTGTTAAAGTTTTGGGCCAATG
1 TTTGTAAAAGGTTTGGGCCAATG
*
7890375 TTTGTAAAAGGTTTGGGCCATTG
1 TTTGTAAAAGGTTTGGGCCAATG
7890398 -TTGTAA
1 TTTGTAA
7890404 TTTGTTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 6 0.23
23 20 0.77
ACGTcount: A:0.23, C:0.08, G:0.27, T:0.42
Consensus pattern (23 bp):
TTTGTAAAAGGTTTGGGCCAATG
Found at i:7890562 original size:93 final size:89
Alignment explanation
Indices: 7890379--7890648 Score: 312
Period size: 93 Copynumber: 3.0 Consensus size: 89
7890369 CCAATGTTTG
* * * * * *
7890379 TAAAAGGTTTGGGCCATTGTTGTAATTTGTTAAAGTTTTGGGTCAAAATGTTGTAGTTTGTAAAA
1 TAAAAGTTTTGGGCCTTTGTTGTAATTTATTAAAGTTTTGGGCCAAAATGTTGTAATTTATAAAA
7890444 GTTTTGGGCCATTGTTGTAATTTA
66 GTTTTGGGCCATTGTTGTAATTTA
* *
7890468 TAAAAGTTTTGGGCCTTTGTTTTAATTTATTAAAGTTTTGGGCCAACGCCATTGTTGTAATTTAT
1 TAAAAGTTTTGGGCCTTTGTTGTAATTTATTAAAGTTTTGGGCCAA----AATGTTGTAATTTAT
7890533 AAAAGTTTTGGGCCATTGTTGTAATTTA
62 AAAAGTTTTGGGCCATTGTTGTAATTTA
* * * * * *
7890561 TAAAAGTTTT-GGTCTATTGTTGAAATTTATAAAAGTTTTGGGTC--ATTGTTGTAATTTGTAAA
1 TAAAAGTTTTGGGCCT-TTGTTGTAATTTATTAAAGTTTTGGGCCAAAATGTTGTAATTTATAAA
** * *
7890623 AGTTTTGAACAATTATTGTAATTTA
65 AGTTTTGGGCCATTGTTGTAATTTA
7890648 T
1 T
7890649 TTGGGTAACT
Statistics
Matches: 158, Mismatches: 18, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
87 39 0.25
89 41 0.26
92 4 0.03
93 74 0.47
ACGTcount: A:0.28, C:0.06, G:0.20, T:0.46
Consensus pattern (89 bp):
TAAAAGTTTTGGGCCTTTGTTGTAATTTATTAAAGTTTTGGGCCAAAATGTTGTAATTTATAAAA
GTTTTGGGCCATTGTTGTAATTTA
Found at i:7890651 original size:22 final size:22
Alignment explanation
Indices: 7890626--7890670 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7890616 TTGTAAAAGT
*
7890626 TTTGAACAATTATTGTAATTTA
1 TTTGAACAACTATTGTAATTTA
***
7890648 TTTGGGTAACTATTGTAATTTA
1 TTTGAACAACTATTGTAATTTA
7890670 T
1 T
7890671 AAAAATTTGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.04, G:0.13, T:0.51
Consensus pattern (22 bp):
TTTGAACAACTATTGTAATTTA
Found at i:7890998 original size:21 final size:21
Alignment explanation
Indices: 7890947--7890999 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
7890937 ATTATGACTA
7890947 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
7890968 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
7890989 TCGCAATGCGA
1 TCGCAATGCGA
7891000 ATAAGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:7891014 original size:20 final size:20
Alignment explanation
Indices: 7890989--7891060 Score: 99
Period size: 20 Copynumber: 3.5 Consensus size: 20
7890979 TTTTCCCAAT
7890989 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
7891009 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
7891029 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGTAAA
7891050 TCGCAATGCGA
1 TCGCAATGCGA
7891061 TACTGACTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 31 0.67
21 15 0.33
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:7891074 original size:20 final size:20
Alignment explanation
Indices: 7891049--7891163 Score: 133
Period size: 20 Copynumber: 5.7 Consensus size: 20
7891039 AATTGGGAAA
*
7891049 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
7891069 ATCGCAACGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
7891090 ATCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
7891110 TTCGCAACGCGATACTTACT
1 ATCGCAACGCGATACTGACT
*
7891130 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
7891150 TTCGCAACGAGATA
1 ATCGCAACGCGATA
7891164 ATACATAATC
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
19 2 0.02
20 64 0.77
21 15 0.18
22 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:7891146 original size:40 final size:40
Alignment explanation
Indices: 7891047--7891183 Score: 177
Period size: 41 Copynumber: 3.4 Consensus size: 40
7891037 CGAATTGGGA
* *
7891047 AAATCGCAATGCGATACTGACTATCGCAACGCGATAATAC
1 AAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
*
7891087 AAAATCGCAACGCGATACTGACTTTCGCAACGCGATACTTAC
1 -AAATCGCAACGCGATACTGACTTTCGCAACGCGATA-ATAC
** *
7891129 -TTTCGCAACGCGATACTGACTTTCGCAACGAGATAATAC
1 AAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
*
7891168 ATAATCGCAATGCGAT
1 A-AATCGCAACGCGAT
7891184 TTTCAAAGCG
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.04
40 32 0.39
41 45 0.54
42 3 0.04
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (40 bp):
AAATCGCAACGCGATACTGACTTTCGCAACGCGATAATAC
Found at i:7891705 original size:20 final size:20
Alignment explanation
Indices: 7891651--7891709 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
7891641 GCGATTCTCT
* **
7891651 CGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCATTTTCG
7891671 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* **
7891691 TGTTGCGATTTTCATTTTC
1 CGTTGCGATAGTCATTTTC
7891710 AGAAACTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.42
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:7893025 original size:18 final size:18
Alignment explanation
Indices: 7893004--7893049 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
7892994 TCCACTTCGG
7893004 GAGCCATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
7893022 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
7893040 GAGCCATCAC
1 GAGCCATCAC
7893050 TTGATCGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.28, C:0.46, G:0.13, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:7893640 original size:19 final size:20
Alignment explanation
Indices: 7893586--7893631 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7893576 TAGTTTACTT
* *
7893586 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
7893606 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
7893626 TCGCAA
1 TCGCAA
7893632 TGTGAAATGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:7893647 original size:19 final size:19
Alignment explanation
Indices: 7893625--7893721 Score: 88
Period size: 19 Copynumber: 5.6 Consensus size: 19
7893615 GGAAATGGCT
*
7893625 ATCGCAATGTGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7893644 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
7893658 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
7893677 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
*
7893691 ATCGCAACGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
7893710 ATCGCAATGCGA
1 ATCGCAATGCGA
7893722 TTTGTGTTTC
Statistics
Matches: 62, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
14 20 0.32
15 2 0.03
16 4 0.06
17 3 0.05
18 2 0.03
19 31 0.50
ACGTcount: A:0.46, C:0.21, G:0.20, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:7893660 original size:14 final size:14
Alignment explanation
Indices: 7893641--7893699 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
7893631 ATGTGAAATG
7893641 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
7893655 AAAATCGCAATGCGAAATG
1 AAAATCGCAA--CG--A-C
7893674 AAAATCGCAACGAC
1 AAAATCGCAACGAC
7893688 AAAATCGCAACG
1 AAAATCGCAACG
7893700 CGAAATGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 22 0.58
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 10 0.26
ACGTcount: A:0.49, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:7893672 original size:33 final size:33
Alignment explanation
Indices: 7893625--7893716 Score: 166
Period size: 33 Copynumber: 2.8 Consensus size: 33
7893615 GGAAATGGCT
*
7893625 ATCGCAATGTGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
7893658 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
7893691 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
7893717 TGCGATTTGT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.48, C:0.21, G:0.18, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:7893752 original size:14 final size:14
Alignment explanation
Indices: 7893733--7893791 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
7893723 TTGTGTTTCG
7893733 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
7893747 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
7893764 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
7893780 CGTTGCGATTTT
1 CGTTGCGATTTT
7893792 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 18 0.47
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 6 0.16
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:7893765 original size:33 final size:33
Alignment explanation
Indices: 7893728--7893807 Score: 151
Period size: 33 Copynumber: 2.4 Consensus size: 33
7893718 GCGATTTGTG
*
7893728 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
7893761 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
7893794 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
7893808 AGCCATTTCG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (33 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
Found at i:7893773 original size:19 final size:19
Alignment explanation
Indices: 7893749--7893826 Score: 76
Period size: 19 Copynumber: 4.4 Consensus size: 19
7893739 GATTTTGTCG
7893749 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
7893768 TTGCGA-TTT--TGTCG--
1 TTGCGATTTTCATTTCGCA
7893782 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*** *
7893801 TTGCGATAGCCATTTCGCG
1 TTGCGATTTTCATTTCGCA
7893820 TTGCGAT
1 TTGCGAT
7893827 AGCCATTTCC
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
14 6 0.12
15 3 0.06
16 4 0.08
17 4 0.08
18 3 0.06
19 28 0.58
ACGTcount: A:0.14, C:0.21, G:0.22, T:0.44
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:7893841 original size:20 final size:19
Alignment explanation
Indices: 7893792--7893865 Score: 103
Period size: 20 Copynumber: 3.8 Consensus size: 19
7893782 TTGCGATTTT
*
7893792 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
7893811 CATTTCGCGTTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
7893830 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
7893850 AATTTTCGCGTTGCGA
1 CA-TTTCGCGTTGCGA
7893866 AAGTAAGTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
19 23 0.46
20 24 0.48
21 3 0.06
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:7893870 original size:20 final size:20
Alignment explanation
Indices: 7893813--7893891 Score: 95
Period size: 20 Copynumber: 4.0 Consensus size: 20
7893803 GCGATAGCCA
* **
7893813 TTTCGCGTTGCGATAGCCAT
1 TTTCGCGTTGCGAAAGTAAT
* *
7893833 TTCCGCGTTGCGATAGTAAT
1 TTTCGCGTTGCGAAAGTAAT
*
7893853 TTTCGCGTTGCGAAAGTAAG
1 TTTCGCGTTGCGAAAGTAAT
*
7893873 TTTCGTGTTGCGAAAGTAA
1 TTTCGCGTTGCGAAAGTAA
7893892 ACTATTCTTC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.34
Consensus pattern (20 bp):
TTTCGCGTTGCGAAAGTAAT
Found at i:7894266 original size:21 final size:20
Alignment explanation
Indices: 7894240--7894308 Score: 75
Period size: 21 Copynumber: 3.4 Consensus size: 20
7894230 CTGTCATCCC
7894240 TCAAGAGTCCCCTCCAATCGT
1 TCAAGAGTCCCCTCC-ATCGT
* * **
7894261 TCAAGAGGCCCCTATCATCCC
1 TCAAGAGTCCCCT-CCATCGT
*
7894282 TCAAGAGTCCCCTCCACCGT
1 TCAAGAGTCCCCTCCATCGT
7894302 TCAAGAG
1 TCAAGAG
7894309 GCCACTGTCA
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
20 10 0.26
21 27 0.71
22 1 0.03
ACGTcount: A:0.25, C:0.39, G:0.16, T:0.20
Consensus pattern (20 bp):
TCAAGAGTCCCCTCCATCGT
Found at i:7894320 original size:41 final size:42
Alignment explanation
Indices: 7894230--7894320 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
7894220 CCCGACTCAC
* *
7894230 CTGTCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCC
1 CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
*
7894272 CTATCATCCCTCAAGAGTCCCCTCC-ACCGTTCAAGAGGCCA
1 CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
7894313 CTGTCATC
1 CTGTCATC
7894321 GTTGAAGAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 21 0.47
42 24 0.53
ACGTcount: A:0.22, C:0.41, G:0.15, T:0.22
Consensus pattern (42 bp):
CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
Found at i:7895763 original size:14 final size:14
Alignment explanation
Indices: 7895729--7895767 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
7895719 TTGATTGTTT
7895729 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
7895743 AAATGATTTGTAAA
1 AATTGATTTGTAAA
**
7895757 TGTTGATTTGT
1 AATTGATTTGT
7895768 TTAATTGATG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:7895944 original size:33 final size:34
Alignment explanation
Indices: 7895874--7895952 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 34
7895864 AAAACAGACT
* ** * *
7895874 ATCGCAATACGAAACTGACTATCGCAACGAGAGA
1 ATCGCAATGCGAAACTGAAAATCACAACGAGAAA
7895908 ATCGCAATGCGAAA-TGAAAATCACAACGAGAAA
1 ATCGCAATGCGAAACTGAAAATCACAACGAGAAA
7895941 ATCGCAATGCGA
1 ATCGCAATGCGA
7895953 TTTTCATTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 27 0.68
34 13 0.32
ACGTcount: A:0.44, C:0.22, G:0.20, T:0.14
Consensus pattern (34 bp):
ATCGCAATGCGAAACTGAAAATCACAACGAGAAA
Found at i:7895996 original size:20 final size:20
Alignment explanation
Indices: 7895971--7896046 Score: 125
Period size: 20 Copynumber: 3.8 Consensus size: 20
7895961 TCGCATTGCG
*
7895971 ATTTTCTCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
*
7895991 ATTTTCGCGTTGTGATAGCC
1 ATTTTCGCGTTGCGATAGCC
*
7896011 ATTTTCGCGTTGCGATAGTC
1 ATTTTCGCGTTGCGATAGCC
7896031 ATTTTCGCGTTGCGAT
1 ATTTTCGCGTTGCGAT
7896047 TTCCCCGTTG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.14, C:0.21, G:0.24, T:0.41
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:7898346 original size:12 final size:12
Alignment explanation
Indices: 7898329--7898353 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7898319 TCTTCGGGGA
7898329 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7898341 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7898353 C
1 C
7898354 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:7899477 original size:20 final size:20
Alignment explanation
Indices: 7899323--7899476 Score: 157
Period size: 20 Copynumber: 7.7 Consensus size: 20
7899313 GATTCTGTAT
* *
7899323 TATCTCGTTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* *
7899343 AATCTCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* *
7899363 AATTGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
7899383 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
* *
7899403 TATCACATTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
** *
7899423 TATCGCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--AAGTCAG
*
7899444 TATCGCGTTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
7899464 TATCGCATTGCGA
1 TATCGCGTTGCGA
7899477 TTTTCCAAAT
Statistics
Matches: 115, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
19 3 0.03
20 96 0.83
21 14 0.12
22 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:7899491 original size:41 final size:41
Alignment explanation
Indices: 7899323--7899498 Score: 117
Period size: 40 Copynumber: 4.3 Consensus size: 41
7899313 GATTCTGTAT
* * * * ***
7899323 TATCTCGTTGCGATAGTCAGAATCTCGTTGCGAAAGTCAGAA
1 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCA-AA
* * * *** *
7899365 T-T-GCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTC-AG
1 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCAAA
* * * * ** *
7899403 TATCACATTGCGAAAGTCAGTATCGCGTTGCGATTTTGTAT
1 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCAAA
7899444 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCCAAA
1 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTT-CAAA
7899486 T-TCGCGTTGCGAT
1 TATCGCGTTGCGAT
7899499 TTACTTATTC
Statistics
Matches: 111, Mismatches: 19, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
38 2 0.02
39 1 0.01
40 58 0.52
41 47 0.42
42 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (41 bp):
TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCAAA
Found at i:7899559 original size:21 final size:22
Alignment explanation
Indices: 7899507--7899559 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
7899497 ATTTACTTAT
7899507 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
7899528 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
7899549 TCGCATTGCGA
1 TCGCATTGCGA
7899560 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:7900454 original size:37 final size:38
Alignment explanation
Indices: 7900413--7900493 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 38
7900403 TTCATTAAAC
* *
7900413 ATTTTTAT-ATTTTCAATTTTGTAAA-AAATATATATAA
1 ATTTTTATGAATTTAAATTTTGTAAAGAAA-ATATATAA
*
7900450 A-TTTTATGAATTTAAATTTTTTAAAGAAAATATATAA
1 ATTTTTATGAATTTAAATTTTGTAAAGAAAATATATAA
7900487 ATATTTT
1 AT-TTTT
7900494 TCAACTTGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
36 6 0.16
37 24 0.65
38 3 0.08
39 4 0.11
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (38 bp):
ATTTTTATGAATTTAAATTTTGTAAAGAAAATATATAA
Found at i:7900644 original size:15 final size:16
Alignment explanation
Indices: 7900624--7900656 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7900614 CAAAATACAA
7900624 TATTCCC-AATAATCT
1 TATTCCCTAATAATCT
*
7900639 TATTCCCTGATAATCT
1 TATTCCCTAATAATCT
7900655 TA
1 TA
7900657 CATTCCGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.30, C:0.24, G:0.03, T:0.42
Consensus pattern (16 bp):
TATTCCCTAATAATCT
Found at i:7904263 original size:17 final size:18
Alignment explanation
Indices: 7904241--7904277 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
7904231 AATTCTTATT
7904241 TAAATAAAT-TTT-ATCAC
1 TAAAT-AATGTTTAATCAC
7904258 TAAATAATGTTTAATCAC
1 TAAATAATGTTTAATCAC
7904276 TA
1 TA
7904278 GAAATTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 3 0.17
17 8 0.44
18 7 0.39
ACGTcount: A:0.46, C:0.11, G:0.03, T:0.41
Consensus pattern (18 bp):
TAAATAATGTTTAATCAC
Found at i:7904663 original size:22 final size:22
Alignment explanation
Indices: 7904637--7904693 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
7904627 TTTACTTTTA
* *
7904637 TGGCACGCTTTTCGTTGTCTTT
1 TGGCACACTTTTCGTTATCTTT
7904659 TGGCACACTTTTCGTTATCTTT
1 TGGCACACTTTTCGTTATCTTT
*
7904681 TGACACA-TTTTCG
1 TGGCACACTTTTCG
7904694 GGTTTGGTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.12, C:0.23, G:0.18, T:0.47
Consensus pattern (22 bp):
TGGCACACTTTTCGTTATCTTT
Found at i:7905144 original size:2 final size:2
Alignment explanation
Indices: 7905137--7905173 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7905127 TTCATATACA
7905137 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7905174 CCCAATATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7905578 original size:25 final size:24
Alignment explanation
Indices: 7905550--7905597 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7905540 TATGATTTTG
7905550 TATTTATAATTGAAATTTTAAAATT
1 TATTTAT-ATTGAAATTTTAAAATT
* *
7905575 TATTTCTATTTAAATTTTAAAAT
1 TATTTATATTGAAATTTTAAAAT
7905598 AAATATTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
TATTTATATTGAAATTTTAAAATT
Found at i:7907493 original size:29 final size:30
Alignment explanation
Indices: 7907433--7907497 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
7907423 ATTTAATGAC
*
7907433 TTAGTGGTATAATTGAAAAAAAATCAAAGT
1 TTAGTGCTATAATTGAAAAAAAATCAAAGT
* * *
7907463 TTAGTGCTATAATTG-ACAAAATTGAAAGT
1 TTAGTGCTATAATTGAAAAAAAATCAAAGT
7907492 TTAGTG
1 TTAGTG
7907498 AGATAAACGA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 17 0.55
30 14 0.45
ACGTcount: A:0.43, C:0.05, G:0.18, T:0.34
Consensus pattern (30 bp):
TTAGTGCTATAATTGAAAAAAAATCAAAGT
Found at i:7909362 original size:33 final size:30
Alignment explanation
Indices: 7909319--7909394 Score: 75
Period size: 29 Copynumber: 2.5 Consensus size: 30
7909309 TATTAAGGTA
* * *
7909319 TATTTTATTATATTTAGTATTTTTTTAGTAATT
1 TATTTAATTATATTTA--A-TTGTTTAATAATT
*
7909352 TATTTAATTAT-TTTAATTGTTTAATATTT
1 TATTTAATTATATTTAATTGTTTAATAATT
7909381 TATTTAATTA-ATTT
1 TATTTAATTATATTT
7909395 TTTTTGCAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
29 23 0.61
30 1 0.03
32 4 0.11
33 10 0.26
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (30 bp):
TATTTAATTATATTTAATTGTTTAATAATT
Found at i:7922114 original size:30 final size:30
Alignment explanation
Indices: 7922078--7922135 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
7922068 ATTTCAGGGG
7922078 CAAACTCGATAAAAAAATCAATTAAGTCTT
1 CAAACTCGATAAAAAAATCAATTAAGTCTT
*
7922108 CAAACTCGATAAAAAAATCCATTAAGTC
1 CAAACTCGATAAAAAAATCAATTAAGTC
7922136 CACTTCTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.50, C:0.19, G:0.07, T:0.24
Consensus pattern (30 bp):
CAAACTCGATAAAAAAATCAATTAAGTCTT
Found at i:7923269 original size:40 final size:40
Alignment explanation
Indices: 7923210--7923315 Score: 142
Period size: 40 Copynumber: 2.6 Consensus size: 40
7923200 CTTTTTTCTT
*
7923210 TTATTATTTTTAAAAATTATTAT-TAATATTATTATTAATA
1 TTATTATTATTAAAAATTATTATATAATATTATTATT-ATA
* * *
7923250 TTATTATTATTATATATTATTATATATTATTATTATTATA
1 TTATTATTATTAAAAATTATTATATAATATTATTATTATA
7923290 TTATTATTATTAAATAAATTATTATA
1 TTATTATTATT-AA-AAATTATTATA
7923316 GGCCCCATTT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
40 34 0.60
41 13 0.23
42 10 0.18
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (40 bp):
TTATTATTATTAAAAATTATTATATAATATTATTATTATA
Found at i:7923314 original size:3 final size:3
Alignment explanation
Indices: 7923225--7923301 Score: 111
Period size: 3 Copynumber: 25.3 Consensus size: 3
7923215 ATTTTTAAAA
* *
7923225 ATT ATT ATT AAT ATT ATT ATT AAT ATT ATT ATT ATT ATAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT
7923271 ATAT ATT ATT ATT ATT A-T ATT ATT ATT ATT A
1 AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7923302 AATAAATTAT
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
2 2 0.03
3 59 0.88
4 6 0.09
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:7924576 original size:15 final size:14
Alignment explanation
Indices: 7924551--7924593 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
7924541 AAATTAGTAT
7924551 CTTTAATTTTAATA
1 CTTTAATTTTAATA
7924565 CTTTATATTTTAATA
1 CTTTA-ATTTTAATA
* *
7924580 TTATTAGTTTTAAT
1 CT-TTAATTTTAAT
7924594 TTCTTTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 5 0.20
15 17 0.68
16 3 0.12
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (14 bp):
CTTTAATTTTAATA
Found at i:7924591 original size:30 final size:31
Alignment explanation
Indices: 7924557--7924615 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
7924547 GTATCTTTAA
7924557 TTTTAA-TACTTTATATTTTAAT-ATTATTAG
1 TTTTAATTACTTT-TATTTTAATCATTATTAG
* *
7924587 TTTTAATTTCTTTTATTTTGATCATTATT
1 TTTTAATTACTTTTATTTTAATCATTATT
7924616 TATTTGCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.64
Consensus pattern (31 bp):
TTTTAATTACTTTTATTTTAATCATTATTAG
Found at i:7924651 original size:23 final size:21
Alignment explanation
Indices: 7924625--7924678 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 21
7924615 TTATTTGCAA
* *
7924625 TTTTATTTTGTTTTTATTATTAC
1 TTTTATTATG-TTTAATTA-TAC
*
7924648 TTTTCTATATGTTTAATTATAC
1 TTTTAT-TATGTTTAATTATAC
7924670 TTTTATTAT
1 TTTTATTAT
7924679 TTTCATCTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 3 0.12
22 8 0.31
23 12 0.46
24 3 0.12
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.69
Consensus pattern (21 bp):
TTTTATTATGTTTAATTATAC
Found at i:7924984 original size:2 final size:2
Alignment explanation
Indices: 7924971--7925030 Score: 111
Period size: 2 Copynumber: 30.0 Consensus size: 2
7924961 GCTTATACAA
*
7924971 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7925013 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
7925031 TTACTTTATT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7925752 original size:13 final size:15
Alignment explanation
Indices: 7925734--7925767 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7925724 TTTCATAATA
7925734 TTTATTA-TAAT-TT
1 TTTATTATTAATGTT
7925747 TTTATTATTAATGTT
1 TTTATTATTAATGTT
7925762 TTTATT
1 TTTATT
7925768 TTATTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
14 4 0.21
15 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTATTATTAATGTT
Found at i:7928096 original size:8 final size:7
Alignment explanation
Indices: 7928072--7928113 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
7928062 TTTTCATACA
7928072 TGCA-TT
1 TGCATTT
7928078 TGCATTT
1 TGCATTT
7928085 TGCATCTT
1 TGCAT-TT
7928093 TGCATTT
1 TGCATTT
*
7928100 TTCATTT
1 TGCATTT
*
7928107 TTCATTT
1 TGCATTT
7928114 ATACTTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
6 4 0.12
7 22 0.67
8 7 0.21
ACGTcount: A:0.14, C:0.17, G:0.10, T:0.60
Consensus pattern (7 bp):
TGCATTT
Found at i:7928096 original size:15 final size:14
Alignment explanation
Indices: 7928072--7928113 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 14
7928062 TTTTCATACA
7928072 TGCA-TTTGCATTT
1 TGCATTTTGCATTT
7928085 TGCATCTTTGCATTT
1 TGCAT-TTTGCATTT
* *
7928100 TTCATTTTTCATTT
1 TGCATTTTGCATTT
7928114 ATACTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 4 0.16
14 8 0.32
15 13 0.52
ACGTcount: A:0.14, C:0.17, G:0.10, T:0.60
Consensus pattern (14 bp):
TGCATTTTGCATTT
Found at i:7928196 original size:14 final size:14
Alignment explanation
Indices: 7928179--7928239 Score: 65
Period size: 14 Copynumber: 4.5 Consensus size: 14
7928169 TATATTTACA
7928179 TTTGCATTTGCATT
1 TTTGCATTTGCATT
7928193 TTTGCATTT---TT
1 TTTGCATTTGCATT
* *
7928204 ATTTACATTTTCATT
1 -TTTGCATTTGCATT
*
7928219 TTTGCATTTGCATC
1 TTTGCATTTGCATT
7928233 TTTGCAT
1 TTTGCAT
7928240 AATTACATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
11 2 0.05
12 8 0.21
14 27 0.69
15 2 0.05
ACGTcount: A:0.16, C:0.15, G:0.10, T:0.59
Consensus pattern (14 bp):
TTTGCATTTGCATT
Found at i:7928201 original size:26 final size:26
Alignment explanation
Indices: 7928172--7928227 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
7928162 ACATTCATAT
*
7928172 ATTTACATTTGCATTTGCATTTTTGC
1 ATTTACATTTACATTTGCATTTTTGC
** *
7928198 ATTTTTATTTACATTTTCATTTTTGC
1 ATTTACATTTACATTTGCATTTTTGC
7928224 ATTT
1 ATTT
7928228 GCATCTTTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.20, C:0.12, G:0.07, T:0.61
Consensus pattern (26 bp):
ATTTACATTTACATTTGCATTTTTGC
Found at i:7932885 original size:60 final size:60
Alignment explanation
Indices: 7932792--7932911 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
7932782 TTCTCAATTG
7932792 GCAGATTATGAATATAGTCCCTTTTCCGTGCAGCAGCACAAAAATACTTCGAATCTACAA
1 GCAGATTATGAATATAGTCCCTTTTCCGTGCAGCAGCACAAAAATACTTCGAATCTACAA
7932852 GCAGATTATGAATATAGTCCCTTTTCCGTGCAGCAGCACAAAAATACTTCGAATCTACAA
1 GCAGATTATGAATATAGTCCCTTTTCCGTGCAGCAGCACAAAAATACTTCGAATCTACAA
7932912 ATTCTGGCTC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (60 bp):
GCAGATTATGAATATAGTCCCTTTTCCGTGCAGCAGCACAAAAATACTTCGAATCTACAA
Found at i:7935412 original size:22 final size:22
Alignment explanation
Indices: 7935382--7935465 Score: 80
Period size: 22 Copynumber: 3.8 Consensus size: 22
7935372 TATCTACATC
* *
7935382 TACATTCTTCAAAGATGACAGA
1 TACACTCTTCAAAGATGATAGA
*
7935404 TACACTCTTCAAAGATGATAGG
1 TACACTCTTCAAAGATGATAGA
* * *
7935426 TTCTCTTTTCAAAGATGATAGA
1 TACACTCTTCAAAGATGATAGA
* *
7935448 TTCTCT-TTCTAAAGATGA
1 TACACTCTTC-AAAGATGA
7935466 AAGCCTTATT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
21 3 0.06
22 51 0.94
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.35
Consensus pattern (22 bp):
TACACTCTTCAAAGATGATAGA
Found at i:7935745 original size:15 final size:15
Alignment explanation
Indices: 7935725--7935801 Score: 63
Period size: 15 Copynumber: 5.4 Consensus size: 15
7935715 CTGATATCCA
7935725 ACTGCTGCCGACGTC
1 ACTGCTGCCGACGTC
* * *
7935740 ACTGCT-TCAAC-TA
1 ACTGCTGCCGACGTC
7935753 ACTGCTGCCGACGTC
1 ACTGCTGCCGACGTC
* * *
7935768 ACTGCT-TCAAC-TA
1 ACTGCTGCCGACGTC
*
7935781 ACTGCTGCCGACGCC
1 ACTGCTGCCGACGTC
7935796 ACTGCT
1 ACTGCT
7935802 TCAACCAACT
Statistics
Matches: 45, Mismatches: 13, Indels: 8
0.68 0.20 0.12
Matches are distributed among these distances:
13 14 0.31
14 12 0.27
15 19 0.42
ACGTcount: A:0.19, C:0.38, G:0.19, T:0.23
Consensus pattern (15 bp):
ACTGCTGCCGACGTC
Found at i:7935756 original size:28 final size:28
Alignment explanation
Indices: 7935722--7935873 Score: 259
Period size: 28 Copynumber: 5.4 Consensus size: 28
7935712 TAACTGATAT
7935722 CCAACTGCTGCCGACGTCACTGCTTCAA
1 CCAACTGCTGCCGACGTCACTGCTTCAA
*
7935750 CTAACTGCTGCCGACGTCACTGCTTCAA
1 CCAACTGCTGCCGACGTCACTGCTTCAA
* *
7935778 CTAACTGCTGCCGACGCCACTGCTTCAA
1 CCAACTGCTGCCGACGTCACTGCTTCAA
* *
7935806 CCAACTGTTGCCGATGTCACTGCTTCAA
1 CCAACTGCTGCCGACGTCACTGCTTCAA
7935834 CCAACTGCTGCCGACGTCACTGCTTCAA
1 CCAACTGCTGCCGACGTCACTGCTTCAA
7935862 CCAACTGCTGCC
1 CCAACTGCTGCC
7935874 AGGTGCCCTA
Statistics
Matches: 116, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 116 1.00
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.23
Consensus pattern (28 bp):
CCAACTGCTGCCGACGTCACTGCTTCAA
Found at i:7937241 original size:2 final size:2
Alignment explanation
Indices: 7937229--7937266 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
7937219 ATATCATGCT
*
7937229 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7937267 CACTTCATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:7947143 original size:7 final size:7
Alignment explanation
Indices: 7947087--7947141 Score: 67
Period size: 7 Copynumber: 7.9 Consensus size: 7
7947077 TTTATATTAG
7947087 GGTTTAT
1 GGTTTAT
*
7947094 GATTTAT
1 GGTTTAT
7947101 GGTTTA-
1 GGTTTAT
*
7947107 GTATTTAT
1 G-GTTTAT
7947115 GGTTTAT
1 GGTTTAT
7947122 GGTTTAT
1 GGTTTAT
*
7947129 GGTTTAA
1 GGTTTAT
7947136 GGTTTA
1 GGTTTA
7947142 AGATTTAGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
6 1 0.02
7 39 0.95
8 1 0.02
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55
Consensus pattern (7 bp):
GGTTTAT
Found at i:7947190 original size:49 final size:49
Alignment explanation
Indices: 7947147--7947239 Score: 125
Period size: 48 Copynumber: 1.9 Consensus size: 49
7947137 GTTTAAGATT
* ** * *
7947147 TAGAGTTTGTATAAACTATATACTTTA-TTACTTTATATAGTTTATGCA
1 TAGAGTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTAAGCA
*
7947195 TAGTGTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTA
1 TAGAGTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTA
7947240 TATATATACT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
48 22 0.56
49 17 0.44
ACGTcount: A:0.34, C:0.08, G:0.10, T:0.48
Consensus pattern (49 bp):
TAGAGTTTCTATAAACTATATAAGTAATTTACTTTATATAGTTTAAGCA
Found at i:7947479 original size:25 final size:25
Alignment explanation
Indices: 7947451--7947499 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7947441 TAATATAAAT
7947451 TATAATTTATAAACTATATA-TTTTA
1 TATAATTTATAAA-TATATAGTTTTA
* *
7947476 TATAGTTTATACATATATAGTTTT
1 TATAATTTATAAATATATAGTTTT
7947500 TTTATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (25 bp):
TATAATTTATAAATATATAGTTTTA
Found at i:7947760 original size:28 final size:28
Alignment explanation
Indices: 7947713--7947775 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 28
7947703 TGGTGTGAAC
*
7947713 TTCCC-AAATTTTCTATTT-CCTCTAAA
1 TTCCCAAAATTTTCAATTTCCCTCTAAA
*
7947739 TTCTCAAAATTTATCAATTTCCCTCTAAA
1 TTCCCAAAATTT-TCAATTTCCCTCTAAA
7947768 TTCCCAAA
1 TTCCCAAA
7947776 TAAAATCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 4 0.13
27 6 0.19
28 6 0.19
29 15 0.48
ACGTcount: A:0.32, C:0.27, G:0.00, T:0.41
Consensus pattern (28 bp):
TTCCCAAAATTTTCAATTTCCCTCTAAA
Found at i:7947776 original size:28 final size:26
Alignment explanation
Indices: 7947713--7947776 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 26
7947703 TGGTGTGAAC
*
7947713 TTCCCAAATTTTCTATTTCCTCTAAA
1 TTCCCAAATTTTCAATTTCCTCTAAA
*
7947739 TTCTCAAAATTTATCAATTTCCCTCTAAA
1 TTC-CCAAATTT-TCAATTT-CCTCTAAA
7947768 TTCCCAAAT
1 TTCCCAAAT
7947777 AAAATCAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 3 0.09
27 7 0.22
28 11 0.34
29 11 0.34
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.42
Consensus pattern (26 bp):
TTCCCAAATTTTCAATTTCCTCTAAA
Found at i:7947970 original size:13 final size:13
Alignment explanation
Indices: 7947952--7947978 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7947942 GACACATTAT
7947952 ATAAAATTATTTA
1 ATAAAATTATTTA
7947965 ATAAAATTATTTA
1 ATAAAATTATTTA
7947978 A
1 A
7947979 ATGTAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATAAAATTATTTA
Found at i:7947988 original size:15 final size:14
Alignment explanation
Indices: 7947952--7947994 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
7947942 GACACATTAT
7947952 ATAAAATTATTT-A
1 ATAAAATTATTTAA
7947965 ATAAAATTATTTAA
1 ATAAAATTATTTAA
* *
7947979 ATGTAAATTATATAA
1 AT-AAAATTATTTAA
7947994 A
1 A
7947995 ACATGATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 12 0.46
14 3 0.12
15 11 0.42
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (14 bp):
ATAAAATTATTTAA
Found at i:7948438 original size:2 final size:2
Alignment explanation
Indices: 7948433--7948512 Score: 83
Period size: 2 Copynumber: 39.5 Consensus size: 2
7948423 TAATTTACTT
7948433 TA TA TA -A TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
7948473 TA GTT TA TA TA TA CTA TA CA TGG TT TA TA TA TA TA TA TA T
1 TA -TA TA TA TA TA -TA TA TA T-A TA TA TA TA TA TA TA TA T
7948513 GTACTATAAG
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
1 2 0.03
2 60 0.91
3 4 0.06
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7948746 original size:2 final size:2
Alignment explanation
Indices: 7948727--7948817 Score: 114
Period size: 2 Copynumber: 46.0 Consensus size: 2
7948717 ATTTACAAAC
* * * *
7948727 TA TA TA T- TT TA TA CA TA TA TA GTT TA TA TA CA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
*
7948769 TA CA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7948810 TA TA TA TA
1 TA TA TA TA
7948818 GAAAATTAAA
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
1 2 0.03
2 74 0.96
3 1 0.01
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7949090 original size:46 final size:45
Alignment explanation
Indices: 7949021--7949109 Score: 126
Period size: 46 Copynumber: 2.0 Consensus size: 45
7949011 AACTTCCCAA
*
7949021 AATTTTCTATTCTCTCTAAATTTCCAAATTTCCCTCTAAATTCTC
1 AATTTTCTATTCTCTCAAAATTTCCAAATTTCCCTCTAAATTCTC
**
7949066 AATTTTCCTATAT-TCTCAAAATTTCCCCATTTCCCTCTAAATTC
1 AATTTT-CTAT-TCTCTCAAAATTTCCAAATTTCCCTCTAAATTC
7949110 CCAAATAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
45 6 0.15
46 32 0.82
47 1 0.03
ACGTcount: A:0.27, C:0.28, G:0.00, T:0.45
Consensus pattern (45 bp):
AATTTTCTATTCTCTCAAAATTTCCAAATTTCCCTCTAAATTCTC
Found at i:7949304 original size:9 final size:9
Alignment explanation
Indices: 7949290--7949332 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
7949280 ATAAAATTAT
7949290 TTAATAAAA
1 TTAATAAAA
7949299 TTAATAAAA
1 TTAATAAAA
7949308 TT-AT----
1 TTAATAAAA
7949312 TTAATAAAA
1 TTAATAAAA
7949321 TTAATAAAA
1 TTAATAAAA
7949330 TTA
1 TTA
7949333 TTTAAATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
4 2 0.07
5 2 0.07
8 2 0.07
9 23 0.79
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
TTAATAAAA
Found at i:7949305 original size:22 final size:22
Alignment explanation
Indices: 7949275--7949337 Score: 117
Period size: 22 Copynumber: 2.8 Consensus size: 22
7949265 AAATAGACCT
7949275 ATTATATAAAATTATTTAATAAA
1 ATTA-ATAAAATTATTTAATAAA
7949298 ATTAATAAAATTATTTAATAAA
1 ATTAATAAAATTATTTAATAAA
7949320 ATTAATAAAATTATTTAA
1 ATTAATAAAATTATTTAA
7949338 ATGTAAATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
22 36 0.90
23 4 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTAATAAAATTATTTAATAAA
Found at i:7949337 original size:13 final size:13
Alignment explanation
Indices: 7949280--7949323 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
7949270 GACCTATTAT
7949280 ATAAAATTATTTA
1 ATAAAATTATTTA
7949293 AT-AAA--A-TTA
1 ATAAAATTATTTA
7949302 ATAAAATTATTTA
1 ATAAAATTATTTA
7949315 ATAAAATTA
1 ATAAAATTA
7949324 ATAAAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
12 4 0.15
13 14 0.52
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
ATAAAATTATTTA
Found at i:7949666 original size:14 final size:14
Alignment explanation
Indices: 7949647--7949690 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
7949637 TCTATTTATA
7949647 TTAGGGTTTATAGT
1 TTAGGGTTTATAGT
*
7949661 TTAGGGTTTATAAT
1 TTAGGGTTTATAGT
* *
7949675 TTAGGATTTAGAGT
1 TTAGGGTTTATAGT
7949689 TT
1 TT
7949691 CTATAAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (14 bp):
TTAGGGTTTATAGT
Found at i:7949769 original size:2 final size:2
Alignment explanation
Indices: 7949764--7949804 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
7949754 GTAATTTACT
*
7949764 TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7949805 GAGAGAGAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7949773 original size:21 final size:21
Alignment explanation
Indices: 7949763--7949804 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7949753 AGTAATTTAC
7949763 TTATATATATATATATATATA
1 TTATATATATATATATATATA
*
7949784 TTATATATATATATAAATATA
1 TTATATATATATATATATATA
7949805 GAGAGAGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TTATATATATATATATATATA
Found at i:7950061 original size:2 final size:2
Alignment explanation
Indices: 7950049--7950177 Score: 54
Period size: 2 Copynumber: 66.0 Consensus size: 2
7950039 TTATATTAGT
* * *
7950049 TA TA CA TA TA TA TA TA CTA TA T- TA -A TA TA AA T- TA TA -A TT
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
7950088 TA TA -A TC TA TA TA T- TT TA TA TA GTT TA TA CA TA TA TA GTT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA
* * * * * * *
7950130 TA TG CA TA TA TA CA TA CA TA CA TA CA TA CA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7950172 TA TA TA
1 TA TA TA
7950178 GAAAATTAAA
Statistics
Matches: 89, Mismatches: 29, Indels: 18
0.65 0.21 0.13
Matches are distributed among these distances:
1 6 0.07
2 79 0.89
3 4 0.04
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (2 bp):
TA
Found at i:7950122 original size:15 final size:16
Alignment explanation
Indices: 7950104--7950141 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
7950094 CTATATATTT
7950104 TATATAGTTTATA-CA
1 TATATAGTTTATAGCA
7950119 TATATAGTTTATATGCA
1 TATATAGTTTATA-GCA
7950136 TATATA
1 TATATA
7950142 CATACATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 13 0.62
17 8 0.38
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.47
Consensus pattern (16 bp):
TATATAGTTTATAGCA
Found at i:7950583 original size:28 final size:27
Alignment explanation
Indices: 7950522--7950672 Score: 102
Period size: 24 Copynumber: 5.6 Consensus size: 27
7950512 TAATATAAAT
* *
7950522 TATAGTTTATAAACTATATACTTT--T-
1 TATAGTTTATATA-TATATAGTTTAATA
* *
7950547 TATAATTTATACATATATAGTTTACATA
1 TATAGTTTATATATATATAGTTTA-ATA
*
7950575 TATAGTTTATATATAGT-CA--TTAA-A
1 TATAGTTTATATATA-TATAGTTTAATA
* *
7950599 CATAATTTATATATATATAGCTTATAATA
1 TATAGTTTATATATATATAG-TT-TAATA
7950628 TAT-GTTTATAATATAAATATAGTTTATATA
1 TATAGTTTAT-ATAT--ATATAGTTTA-ATA
7950658 TATAGTTTATATATA
1 TATAGTTTATATATA
7950673 AACTTATATT
Statistics
Matches: 99, Mismatches: 11, Indels: 29
0.71 0.08 0.21
Matches are distributed among these distances:
23 1 0.01
24 24 0.24
25 12 0.12
26 3 0.03
27 2 0.02
28 23 0.23
29 10 0.10
30 12 0.12
31 12 0.12
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.48
Consensus pattern (27 bp):
TATAGTTTATATATATATAGTTTAATA
Found at i:7950636 original size:13 final size:14
Alignment explanation
Indices: 7950547--7950672 Score: 74
Period size: 13 Copynumber: 9.1 Consensus size: 14
7950537 ATATACTTTT
*
7950547 TATAATTTATACATA
1 TATAGTTTATA-ATA
*
7950562 TATAGTTTA-CATA
1 TATAGTTTATAATA
7950575 TATAG-TT-T-ATA
1 TATAGTTTATAATA
*
7950586 TATAGTCATTA-AACA
1 TATAGT--TTATAATA
7950601 TA-A-TTTATATATA
1 TATAGTTTATA-ATA
*
7950614 TATAGCTTATAATA
1 TATAGTTTATAATA
7950628 TAT-GTTTATAATATAAA
1 TATAGTTTAT-A-AT--A
7950645 TATAGTTTAT-ATA
1 TATAGTTTATAATA
7950658 TATAGTTTAT-ATA
1 TATAGTTTATAATA
7950671 TA
1 TA
7950673 AACTTATATT
Statistics
Matches: 90, Mismatches: 6, Indels: 32
0.70 0.05 0.25
Matches are distributed among these distances:
11 11 0.12
12 3 0.03
13 34 0.38
14 11 0.12
15 21 0.23
17 4 0.04
18 6 0.07
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.48
Consensus pattern (14 bp):
TATAGTTTATAATA
Found at i:7950648 original size:19 final size:19
Alignment explanation
Indices: 7950624--7950661 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
7950614 TATAGCTTAT
7950624 AATATATGTTTATA-ATATA
1 AATATA-GTTTATATATATA
7950643 AATATAGTTTATATATATA
1 AATATAGTTTATATATATA
7950662 GTTTATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (19 bp):
AATATAGTTTATATATATA
Found at i:7950685 original size:31 final size:32
Alignment explanation
Indices: 7950607--7950689 Score: 102
Period size: 31 Copynumber: 2.7 Consensus size: 32
7950597 AACATAATTT
* *
7950607 ATATATATATAGCTTATA-ATATATGTTTATA
1 ATATAAATATAGTTTATATATATATGTTTATA
7950638 ATATAAATATAGTTTATATATATA-GTTTAT-
1 ATATAAATATAGTTTATATATATATGTTTATA
7950668 ATATAAACTTATA-TTTATATAT
1 ATATAAA--TATAGTTTATATAT
7950690 GTTTTTTTTC
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 7 0.15
31 31 0.66
32 9 0.19
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.49
Consensus pattern (32 bp):
ATATAAATATAGTTTATATATATATGTTTATA
Found at i:7950966 original size:442 final size:437
Alignment explanation
Indices: 7950581--7951379 Score: 1222
Period size: 439 Copynumber: 1.9 Consensus size: 437
7950571 CATATATAGT
* * *
7950581 TTATATATAGTCAT-TAAACATAATT-TATATATATATAGCTTATAAT-A-TATGTT-TATA-AT
1 TTATATA-ATTCATATAAACAT-ATTATATATATATATAGCTTAAAATAATTATATTATATATAT
7950640 ATAAATATAGTTTATATATATAGTTTATATATAAACTTATA---T-T-TATA-TATG-TTTTTTT
64 ATAAATATAGTTTATATATATAGTTTATATATAAACTTATATTTTATATATATTATGTTTTTTTT
*
7950698 TCAATTTTTT-TGAATGCAATTTAC-ATTTTTTTCATTATTTCTTCACATTTTGCATTTATTTCG
129 TCAATTTTTTATGAATGCAATTTACAATATTTTTCATTATTTCTTCACATTTTGCATTTATTTCG
7950761 A-TTCATCATTTTG-TTTTT-TTT-TTT-TTTTAAGTC-TTCACTTTTATATGTATTC-AATTAG
194 ATTTCATCATTTTGTTTTTTATTTATTTATTTTAAGTCTTTCACTTTTATATGTATTCAAATTAG
7950819 TCCTTAAATTTTATATTTGCATGTTCATTTGGCCCATTG-TAGTTGTTATTTA-A-TTTTGTAAC
259 TCCTTAAA-TTTATATTTGCATGTTCATTTGGCCCATTGTTAGTTGTTATTTATATTTTTGTAAC
7950881 TGACCCATAACTTTTTAAATGGGTATAATTTAGTTA-TTTT-TATTAATTTAAACACA-ATATAC
323 TGACCCATAACTTTTTAAATGGGTATAATTTAGTTATTTTTATATTAATTTAAACACATATATAC
7950943 ATACACTATATTAATATAAATTATAGTTTATAAACTATATACTTTTTATA
388 ATACACTATATTAATATAAATTATAGTTTATAAACTATATACTTTTTATA
* * * *
7950993 TTATATAGTTCATATAAACATATTTATATATATATATAGCTTATAATAATTATATTGTTTATATA
1 TTATATAATTCATATAAACATA-TTATATATATATATAGCTTAAAATAATTATATTATATATATA
7951058 TAAATATAGTTTATATATATAGTTTATATATAAACTTATATTTTATATATATTATGTTTTTTTTT
65 TAAATATAGTTTATATATATAGTTTATATATAAACTTATATTTTATATATATTATGTTTTTTTTT
7951123 CAATTTTTTAAATGAATGCAATTTACAATATTTTTCATTATTTCTTCACATTTTGCATTTATTTC
130 CAATTTTTT--ATGAATGCAATTTACAATATTTTTCATTATTTCTTCACATTTTGCATTTATTTC
7951188 GATTTCATCATTTTGTTTTTTTTAATTTATTTCAATTTTAAGTCTTTCACTTTTATATGTATTCA
193 GATTTCATCATTTTG--TTTTTT-ATTTATTT--ATTTTAAGTCTTTCACTTTTATATGTATTCA
7951253 AATTAGTCCTTAAATTTATATTTGCATGTTCATTTGGCCCATTGTTAGTTGTTATTTATATTTTT
253 AATTAGTCCTTAAATTTATATTTGCATGTTCATTTGGCCCATTGTTAGTTGTTATTTATATTTTT
7951318 GTAACTGACCCATAACTTTTTAAATGGGTATAATTTAGTTATTTTTTATATTAATTTAAACA
318 GTAACTGACCCATAACTTTTTAAATGGGTATAATTTAGTTA-TTTTTATATTAATTTAAACA
7951380 TCACATTTTA
Statistics
Matches: 346, Mismatches: 5, Indels: 39
0.89 0.01 0.10
Matches are distributed among these distances:
411 5 0.01
412 16 0.05
413 21 0.06
414 1 0.00
415 5 0.01
416 3 0.01
417 43 0.12
420 1 0.00
421 1 0.00
422 4 0.01
423 4 0.01
424 17 0.05
427 14 0.04
428 39 0.11
429 12 0.03
432 5 0.01
434 3 0.01
435 3 0.01
438 9 0.03
439 49 0.14
440 27 0.08
441 1 0.00
442 45 0.13
444 4 0.01
445 14 0.04
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.53
Consensus pattern (437 bp):
TTATATAATTCATATAAACATATTATATATATATATAGCTTAAAATAATTATATTATATATATAT
AAATATAGTTTATATATATAGTTTATATATAAACTTATATTTTATATATATTATGTTTTTTTTTC
AATTTTTTATGAATGCAATTTACAATATTTTTCATTATTTCTTCACATTTTGCATTTATTTCGAT
TTCATCATTTTGTTTTTTATTTATTTATTTTAAGTCTTTCACTTTTATATGTATTCAAATTAGTC
CTTAAATTTATATTTGCATGTTCATTTGGCCCATTGTTAGTTGTTATTTATATTTTTGTAACTGA
CCCATAACTTTTTAAATGGGTATAATTTAGTTATTTTTATATTAATTTAAACACATATATACATA
CACTATATTAATATAAATTATAGTTTATAAACTATATACTTTTTATA
Found at i:7951048 original size:32 final size:32
Alignment explanation
Indices: 7950956--7951116 Score: 111
Period size: 32 Copynumber: 5.0 Consensus size: 32
7950946 CACTATATTA
* *
7950956 ATATAAAT-TATAGTTTATA-AACTATATACTTT
1 ATATATATATATAGTTTATATAA-T-TATAGTTT
* * **
7950988 TTATAT-TATATAGTTCATATAAACATA-TTT
1 ATATATATATATAGTTTATATAATTATAGTTT
*
7951018 ATATATATATATAGCTTATAATAATTATATTGTTT
1 ATATATATATATAGTTTAT-ATAATTATA--GTTT
*
7951053 ATATATAAATATAGTTTATAT-A-TATAGTTT
1 ATATATATATATAGTTTATATAATTATAGTTT
* *
7951083 ATATATAAACTTATATTTTATATATATTAT-GTTT
1 ATATATATA--TATAGTTTATATA-ATTATAGTTT
7951117 TTTTTTCAAT
Statistics
Matches: 104, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
30 21 0.20
31 14 0.13
32 36 0.35
33 3 0.03
34 7 0.07
35 23 0.22
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (32 bp):
ATATATATATATAGTTTATATAATTATAGTTT
Found at i:7951086 original size:13 final size:13
Alignment explanation
Indices: 7951056--7951089 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
7951046 ATTGTTTATA
*
7951056 TATAAATATAGTT
1 TATATATATAGTT
7951069 TATATATATAGTT
1 TATATATATAGTT
7951082 TATATATA
1 TATATATA
7951090 AACTTATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (13 bp):
TATATATATAGTT
Found at i:7952179 original size:60 final size:59
Alignment explanation
Indices: 7952110--7952247 Score: 138
Period size: 59 Copynumber: 2.3 Consensus size: 59
7952100 AAATGTTCCG
* * * * *
7952110 ATTTGATCCCTAAACTATGGCTATTATTCTAAATT-AGTCCTCAAACT-TTTGAACATTTC-A
1 ATTTCATCCC-AAACTATGCCT-TCATTCTAAATTGA-TCCCCAAAATATTTGAACA-TTCAA
* * *
7952170 ATTTCATCCCCAAACCATACCTTCATTCTAAATTGATCCCCAAAATATTTTAACATTCAA
1 ATTTCAT-CCCAAACTATGCCTTCATTCTAAATTGATCCCCAAAATATTTGAACATTCAA
7952230 ATTTCATCCCAAACTATG
1 ATTTCATCCCAAACTATG
7952248 AATATATACT
Statistics
Matches: 64, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
59 31 0.48
60 30 0.47
61 3 0.05
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (59 bp):
ATTTCATCCCAAACTATGCCTTCATTCTAAATTGATCCCCAAAATATTTGAACATTCAA
Found at i:7952867 original size:24 final size:23
Alignment explanation
Indices: 7952821--7952867 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7952811 TAGATGGTTA
* *
7952821 AAAAAAATATAAGGTCCATTATT
1 AAAAAAATATAAGATCAATTATT
*
7952844 AAAAAAATATAATATCAATATATT
1 AAAAAAATATAAGATCAAT-TATT
7952868 TTTAAGTGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.32
Consensus pattern (23 bp):
AAAAAAATATAAGATCAATTATT
Found at i:7956171 original size:14 final size:14
Alignment explanation
Indices: 7956135--7956172 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
7956125 AGTTAACTTT
*
7956135 TTGGTCAAAGTTAA
1 TTGGTCAAAGTCAA
*
7956149 -TGATCAAAGTCAA
1 TTGGTCAAAGTCAA
7956162 TTGGTCAAAGT
1 TTGGTCAAAGT
7956173 TAACGGGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (14 bp):
TTGGTCAAAGTCAA
Found at i:7956210 original size:14 final size:15
Alignment explanation
Indices: 7956191--7956229 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
7956181 TAACTCTGAC
7956191 AAGTTGACTCAGA-T
1 AAGTTGACTCAGACT
*
7956205 AGGTTGACTCAGACT
1 AAGTTGACTCAGACT
7956220 AAGTTGACTC
1 AAGTTGACTC
7956230 GGACGAGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (15 bp):
AAGTTGACTCAGACT
Found at i:7960204 original size:2 final size:2
Alignment explanation
Indices: 7960191--7960250 Score: 59
Period size: 2 Copynumber: 30.0 Consensus size: 2
7960181 GAAAACAAAA
* * * *
7960191 AT AT AT AC AT AT AT A- AA AT AT AT TT ACT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT
*
7960233 AT AA AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
7960251 TGTGTGAAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
1 1 0.02
2 44 0.94
3 2 0.04
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7960221 original size:18 final size:18
Alignment explanation
Indices: 7960187--7960225 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
7960177 ATATGAAAAC
7960187 AAAAATATATACATATAT
1 AAAAATATATACATATAT
*
7960205 AAAATATATTTACTATATAT
1 AAAA-ATATATAC-ATATAT
7960225 A
1 A
7960226 TTTATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 7 0.39
20 7 0.39
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAAATATATACATATAT
Found at i:7961621 original size:16 final size:16
Alignment explanation
Indices: 7961600--7961656 Score: 114
Period size: 16 Copynumber: 3.6 Consensus size: 16
7961590 ACAGGACCTG
7961600 AAAACCCTAGGGTTTA
1 AAAACCCTAGGGTTTA
7961616 AAAACCCTAGGGTTTA
1 AAAACCCTAGGGTTTA
7961632 AAAACCCTAGGGTTTA
1 AAAACCCTAGGGTTTA
7961648 AAAACCCTA
1 AAAACCCTA
7961657 ATTGTTTTAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.40, C:0.21, G:0.16, T:0.23
Consensus pattern (16 bp):
AAAACCCTAGGGTTTA
Found at i:7962678 original size:17 final size:17
Alignment explanation
Indices: 7962656--7962689 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7962646 TATTTGGTGG
7962656 GAGTTCGCTTGGATGTC
1 GAGTTCGCTTGGATGTC
7962673 GAGTTCGCTTGGATGTC
1 GAGTTCGCTTGGATGTC
7962690 TAAGTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.18, G:0.35, T:0.35
Consensus pattern (17 bp):
GAGTTCGCTTGGATGTC
Found at i:7963647 original size:6 final size:6
Alignment explanation
Indices: 7963636--7963665 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
7963626 AATAAGAAAA
7963636 TAATAT TAATAT TAATAT TAATATT TAATA
1 TAATAT TAATAT TAATAT TAATA-T TAATA
7963666 ATTATAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TAATAT
Found at i:7964008 original size:90 final size:88
Alignment explanation
Indices: 7963854--7964043 Score: 220
Period size: 90 Copynumber: 2.1 Consensus size: 88
7963844 AGAGATTTTT
* * *
7963854 GAAGATCAAATTTGAAAAAATATATGCTCCCCTACTCTTCATGGTAGATCATATCTAGAAACTTT
1 GAAGATCAAATCTGAAAAAATATATGCTCCCCTACTCTTCAGGGTAGATCAGATCTAGAAACTTT
*
7963919 GATTCACTTCACTGTTCTTCAGA
66 GATTCACTTCACTGCTCTTCAGA
* * * * * *
7963942 GAAGATCAAATCTGAAAAAAGTGATATGCTCCGCT-GTGTTCCAGGGTAGGTCAGATCTGGAGAC
1 GAAGATCAAATCTGAAAAAA-T-ATATGCTCCCCTACTCTT-CAGGGTAGATCAGATCTAGAAAC
* * *
7964006 TTTGATTCACTTTATTGCTCTTCAGG
63 TTTGATTCACTTCACTGCTCTTCAGA
*
7964032 GAAGATTAAATC
1 GAAGATCAAATC
7964044 AGGGTTGATT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
88 19 0.22
89 4 0.05
90 62 0.73
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Consensus pattern (88 bp):
GAAGATCAAATCTGAAAAAATATATGCTCCCCTACTCTTCAGGGTAGATCAGATCTAGAAACTTT
GATTCACTTCACTGCTCTTCAGA
Found at i:7964159 original size:131 final size:129
Alignment explanation
Indices: 7963925--7964298 Score: 391
Period size: 131 Copynumber: 2.9 Consensus size: 129
7963915 CTTTGATTCA
* **
7963925 CTTCACTGTTCTTCAGAGAAGATCAAATCTGAAAAAAGTGATATGCTCCGCTGTGTTCCAGGGTA
1 CTTCACTGTTCTTCAG-GAAGATCAAATATGAAAAAAGTGATATGCTCCGCTGCATTCCAGGGTA
* * * *
7963990 GGTCAGATCTGGAGACTTTGATTCACTTTATTGCTCTTCAGGGAAGATTAAATCAGGGTTGATTT
65 GATCAGATCTGAAGACTTTGATTCACTTTACTACTCTTCAGGGAAGATTAAAT-AGGGTTGATTT
*
7964055 T
129 G
* * * *
7964056 CTTTACTGTTCTTCAAGGAAGATCAAATATGAAAAAGAG-GATCTGCTCCGTTGCATTCCATGGT
1 CTTCACTGTTCTTC-AGGAAGATCAAATATGAAAAA-AGTGATATGCTCCGCTGCATTCCAGGGT
* * *
7964120 AGATCAGATCTTAAGACTTTGATTCACTTTACTATTCTTCATGGAAGATTAAATAGGGTTGATTT
64 AGATCAGATCTGAAGACTTTGATTCACTTTACTACTCTTCAGGGAAGATTAAATAGGGTTGATTT
7964185 G
129 G
* * *
7964186 CTTCACT-TCTCTTCAGGAAAGATCAAATCTGGAAACAATTAG-GCTATGCTCCGCTGC--TCTT
1 CTTCACTGT-TCTTCAGG-AAGATCAAATAT-GAAA-AA--AGTGATATGCTCCGCTGCATTC-C
* * * * *
7964247 AGGGTAAATCAGATATGAAAACTATGATTCA-TTTCACTGCTCTTCAGGGAAG
59 AGGGTAGATCAGATCTGAAGACTTTGATTCACTTT-ACTACTCTTCAGGGAAG
7964299 TTTGAATCGG
Statistics
Matches: 203, Mismatches: 31, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
129 4 0.02
130 33 0.16
131 107 0.53
132 45 0.22
133 14 0.07
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (129 bp):
CTTCACTGTTCTTCAGGAAGATCAAATATGAAAAAAGTGATATGCTCCGCTGCATTCCAGGGTAG
ATCAGATCTGAAGACTTTGATTCACTTTACTACTCTTCAGGGAAGATTAAATAGGGTTGATTTG
Found at i:7965326 original size:9 final size:10
Alignment explanation
Indices: 7965301--7965325 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7965291 TATTTTTTTC
7965301 TTTTTTCATA
1 TTTTTTCATA
7965311 TTTTTTCATA
1 TTTTTTCATA
7965321 TTTTT
1 TTTTT
7965326 CTTTTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTTCATA
Found at i:7969864 original size:14 final size:13
Alignment explanation
Indices: 7969831--7969872 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
7969821 TTTGACTTTT
7969831 CGGTCAAAGTCAA
1 CGGTCAAAGTCAA
7969844 CGGTCAAAGTCAA
1 CGGTCAAAGTCAA
* *
7969857 TGGGTCAAAGTTAA
1 -CGGTCAAAGTCAA
7969871 CG
1 CG
7969873 TGTTGACTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (13 bp):
CGGTCAAAGTCAA
Found at i:7972540 original size:107 final size:107
Alignment explanation
Indices: 7972414--7972627 Score: 410
Period size: 107 Copynumber: 2.0 Consensus size: 107
7972404 AATATAATGA
* *
7972414 TGAGTGAGTATCGTCTCCACTGGGATTGGGTGAAATTACGAAAGTCTAACCAAAGTAACGCACTA
1 TGAGTGAGTATCGTCTCCACAGGGATTGGGTGAAATTACGAAAGTCTAACCAAAGCAACGCACTA
7972479 AATTATCTAAGTATAGTTAGTCTTGATATATACAAATGTCAC
66 AATTATCTAAGTATAGTTAGTCTTGATATATACAAATGTCAC
7972521 TGAGTGAGTATCGTCTCCACAGGGATTGGGTGAAATTACGAAAGTCTAACCAAAGCAACGCACTA
1 TGAGTGAGTATCGTCTCCACAGGGATTGGGTGAAATTACGAAAGTCTAACCAAAGCAACGCACTA
7972586 AATTATCTAAGTATAGTTAGTCTTGATATATACAAATGTCAC
66 AATTATCTAAGTATAGTTAGTCTTGATATATACAAATGTCAC
7972628 GGCAATGGAT
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 105 1.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (107 bp):
TGAGTGAGTATCGTCTCCACAGGGATTGGGTGAAATTACGAAAGTCTAACCAAAGCAACGCACTA
AATTATCTAAGTATAGTTAGTCTTGATATATACAAATGTCAC
Found at i:7972786 original size:17 final size:16
Alignment explanation
Indices: 7972764--7972797 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7972754 TAAAAACAGT
7972764 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
7972781 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
7972797 A
1 A
7972798 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:7973302 original size:24 final size:24
Alignment explanation
Indices: 7973274--7973320 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7973264 AAAGAACCAA
*
7973274 AATAAA-CTTAAATATACCATTAAC
1 AATAAAGCTTAAACA-ACCATTAAC
*
7973298 AATAAAGTTTAAACAACCATTAA
1 AATAAAGCTTAAACAACCATTAA
7973321 ATCAACCACC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.55, C:0.15, G:0.02, T:0.28
Consensus pattern (24 bp):
AATAAAGCTTAAACAACCATTAAC
Found at i:7974013 original size:18 final size:18
Alignment explanation
Indices: 7973967--7974013 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
7973957 ACATCATAGA
*
7973967 CAAACTGCACCTTTCCCT
1 CAAACAGCACCTTTCCCT
*
7973985 CAAACATCACCTTTCCCT
1 CAAACAGCACCTTTCCCT
*
7974003 CAAATAGCACC
1 CAAACAGCACC
7974014 ATTAAGAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.30, C:0.43, G:0.04, T:0.23
Consensus pattern (18 bp):
CAAACAGCACCTTTCCCT
Found at i:7977118 original size:17 final size:16
Alignment explanation
Indices: 7977096--7977129 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7977086 TAAAAACAGT
7977096 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
7977113 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
7977129 A
1 A
7977130 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:7981336 original size:21 final size:21
Alignment explanation
Indices: 7981307--7981346 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7981297 GAGAAATTAT
7981307 TTTTAAAATAT-AAAAATGATA
1 TTTTAAAAT-TGAAAAATGATA
*
7981328 TTTTGAAATTGAAAAATGA
1 TTTTAAAATTGAAAAATGA
7981347 AAATAATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.38
Consensus pattern (21 bp):
TTTTAAAATTGAAAAATGATA
Found at i:7985140 original size:21 final size:21
Alignment explanation
Indices: 7985114--7985170 Score: 60
Period size: 24 Copynumber: 2.6 Consensus size: 21
7985104 TTGTGCATAA
7985114 TGCATCGATACACTATGAAAG
1 TGCATCGATACACTATGAAAG
* * *
7985135 TGCATCGATGCATCCCTTTGAATG
1 TGCATCGAT--A-CACTATGAAAG
7985159 TGCATCGATACA
1 TGCATCGATACA
7985171 TCATGAAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
21 10 0.34
22 1 0.03
23 1 0.03
24 17 0.59
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (21 bp):
TGCATCGATACACTATGAAAG
Found at i:7985189 original size:45 final size:44
Alignment explanation
Indices: 7985113--7985211 Score: 123
Period size: 45 Copynumber: 2.2 Consensus size: 44
7985103 TTTGTGCATA
*
7985113 ATGCATCGATACACTATGAAAGTGCATCGATGCA-TCCCTTTGAAT
1 ATGCATCGATACACTATGAAAGTGCACCGATGCACT-CC-TTGAAT
*
7985158 GTGCATCGATACA-TCATG-AAGATGCACCGATGCACTCCTTGAAT
1 ATGCATCGATACACT-ATGAAAG-TGCACCGATGCACTCCTTGAAT
7985202 ATGCATCGAT
1 ATGCATCGAT
7985212 GCACAAGGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
44 19 0.40
45 28 0.58
46 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (44 bp):
ATGCATCGATACACTATGAAAGTGCACCGATGCACTCCTTGAAT
Found at i:7987428 original size:20 final size:20
Alignment explanation
Indices: 7987399--7987436 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7987389 TTAATAAAAA
7987399 GGGGGAGAAGTGTTAAAGGG
1 GGGGGAGAAGTGTTAAAGGG
*
7987419 GGGGGGGAAGTGTTAAAG
1 GGGGGAGAAGTGTTAAAG
7987437 TAAGGGGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.55, T:0.16
Consensus pattern (20 bp):
GGGGGAGAAGTGTTAAAGGG
Found at i:7987443 original size:20 final size:21
Alignment explanation
Indices: 7987397--7987443 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
7987387 ATTTAATAAA
7987397 AAGGGGGAGAAGTGTTAAAGG
1 AAGGGGGAGAAGTGTTAAAGG
* * *
7987418 -GGGGGGGGAAGTGTTAAAGT
1 AAGGGGGAGAAGTGTTAAAGG
7987438 AAGGGG
1 AAGGGG
7987444 AGTAATTTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.32, C:0.00, G:0.53, T:0.15
Consensus pattern (21 bp):
AAGGGGGAGAAGTGTTAAAGG
Found at i:7987941 original size:64 final size:64
Alignment explanation
Indices: 7987811--7987969 Score: 164
Period size: 64 Copynumber: 2.5 Consensus size: 64
7987801 GTTTTAATTG
* * * * * *
7987811 AACATCGAATAGCTTTTGTGTACCGATGGACATACCATGCATCGATGCACTCCATATTTATTAA
1 AACATCGAATTGATTTTATGCACCGATGCACATACCATGCATCGATGCACTCCAGATTTATTAA
*
7987875 AACATCGAATTGATTTTATGCACCGATGCACA-AGCCATGCATCGATGCAC-CCAGGCTTT-TTC
1 AACATCGAATTGATTTTATGCACCGATGCACATA-CCATGCATCGATGCACTCCA-GATTTATT-
7987937 AA
63 AA
* * *
7987939 AACATC-AAATCATATTTATGCATCGATGCAC
1 AACATCGAATTGAT-TTTATGCACCGATGCAC
7987970 TATTAGTGTA
Statistics
Matches: 81, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
63 11 0.14
64 70 0.86
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (64 bp):
AACATCGAATTGATTTTATGCACCGATGCACATACCATGCATCGATGCACTCCAGATTTATTAA
Found at i:7990638 original size:82 final size:82
Alignment explanation
Indices: 7990542--7990873 Score: 323
Period size: 82 Copynumber: 4.0 Consensus size: 82
7990532 TTTTTATACA
* * * * *
7990542 AAACTCCATGATAGAGTAGTATTTTAG-CATCGTTTTTATATAAATGTTGTAATAGGGAT-ATCT
1 AAACGCCATAATAGAGTAGTACTTTAGTGAT-GTTTTTATATAAATGTCGTAATAGGG-TCATCT
7990605 ATAGTGGCATTTTTTCAAC
64 ATAGTGGCATTTTTTCAAC
* *** * *
7990624 AAACGCCATAATAGAGTATTA-TTGTAGTGATGTTTTTTATATAAACACCATAATATGGTCATCT
1 AAACGCCATAATAGAGTAGTACTT-TAGTGATG-TTTTTATATAAATGTCGTAATAGGGTCATCT
* *
7990688 ATTGTGGCGTTTTTTCAAC
64 ATAGTGGCATTTTTTCAAC
* * * * * * *
7990707 AAACGCAACAACAAAGTAGTACTTTAGTGGTGTTTTTACACAAATGTCGTAATAGGGTCATCTAT
1 AAACGCCATAATAGAGTAGTACTTTAGTGATGTTTTTATATAAATGTCGTAATAGGGTCATCTAT
7990772 AGTGGCA-TTTTTCAAC
66 AGTGGCATTTTTTCAAC
* * * * *** *
7990788 AAACGCCATAATATAGTAGTACTTTAGTGATGGTTTTACACAAACACCGTAATAGGGTTAATCTA
1 AAACGCCATAATAGAGTAGTACTTTAGTGATGTTTTTATATAAATGTCGTAATAGGG-TCATCTA
*
7990853 TAGTGGCA-TTTTTCAAA
65 TAGTGGCATTTTTTCAAC
7990870 AAAC
1 AAAC
7990874 TCCTCAATTT
Statistics
Matches: 206, Mismatches: 38, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
81 59 0.29
82 80 0.39
83 65 0.32
84 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (82 bp):
AAACGCCATAATAGAGTAGTACTTTAGTGATGTTTTTATATAAATGTCGTAATAGGGTCATCTAT
AGTGGCATTTTTTCAAC
Done.