Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008620.1 Hibiscus syriacus cultivar Beakdansim tig00111582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13158977
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 41 of 64
Found at i:8172627 original size:14 final size:14
Alignment explanation
Indices: 8172610--8172655 Score: 74
Period size: 14 Copynumber: 3.3 Consensus size: 14
8172600 AATGAACATA
*
8172610 AACGAACATAATCG
1 AACGAACATAACCG
*
8172624 AACGAACATAACCA
1 AACGAACATAACCG
8172638 AACGAACATAACCG
1 AACGAACATAACCG
8172652 AACG
1 AACG
8172656 TTCACGAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.52, C:0.26, G:0.13, T:0.09
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:8175073 original size:82 final size:82
Alignment explanation
Indices: 8174979--8175205 Score: 226
Period size: 82 Copynumber: 2.7 Consensus size: 82
8174969 ACATTTTTGT
* * * *
8174979 AAAAAACACCACTATAGGTGAACCCTATTGTGGCATTTTATAAAAATGCCGCTAAAGTTCTAAT-
1 AAAAAACGCCACTATAGATGAA-CCTATTGTGACATTTTATAAAAATGCCGCTAAAGTACTAATC
*
8175043 TTGTTGTGGCGTTTGTCG-
65 TT-TTGTGGCATTTGTCGA
* * * * * *
8175061 AAAAAATGCCACTATAGAT-AGACCTATTGTGTCGTTTTTATAAAAACGCTGCTAAAGTACTACT
1 AAAAAACGCCACTATAGATGA-ACCTATTGTGAC-ATTTTATAAAAATGCCGCTAAAGTACTAAT
*
8175125 CTTTTGTGGCATTTTTCGA
64 CTTTTGTGGCATTTGTCGA
* * * * * *
8175144 AAAAAACGCCACTACATATGTACCTATTGCGACATTTATATAAAAATACCACTAAAGTACTA
1 AAAAAACGCCACTATAGATGAACCTATTGTGACATTT-TATAAAAATGCCGCTAAAGTACTA
8175206 CTCTATTGCG
Statistics
Matches: 117, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
81 11 0.09
82 58 0.50
83 48 0.41
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (82 bp):
AAAAAACGCCACTATAGATGAACCTATTGTGACATTTTATAAAAATGCCGCTAAAGTACTAATCT
TTTGTGGCATTTGTCGA
Found at i:8175188 original size:83 final size:82
Alignment explanation
Indices: 8175002--8175209 Score: 224
Period size: 83 Copynumber: 2.5 Consensus size: 82
8174992 ATAGGTGAAC
* * * *
8175002 CCTATTGTGGCATTTTATAAAAATGCCGCTAAAGTTCTAAT-TTGTTGTGGCGTTTGTCGAAAAA
1 CCTATTGTGACATTTTATAAAAATGCCGCTAAAGTACTACTCTTGTTGTGGCATTTGTCGAAAAA
* *
8175066 ATGCCACTATAGATAGA
66 ACGCCACTACAGATAGA
* * * * *
8175083 CCTATTGTGTCGTTTTTATAAAAACGCTGCTAAAGTACTACTCTT-TTGTGGCATTTTTCGAAAA
1 CCTATTGTGAC-ATTTTATAAAAATGCCGCTAAAGTACTACTCTTGTTGTGGCATTTGTCG-AAA
*
8175147 AAACGCCACTACATAT-GTA
64 AAACGCCACTACAGATAG-A
* * *
8175166 CCTATTGCGACATTTATATAAAAATACCACTAAAGTACTACTCT
1 CCTATTGTGACATTT-TATAAAAATGCCGCTAAAGTACTACTCT
8175210 ATTGCGACGT
Statistics
Matches: 104, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
81 10 0.10
82 42 0.40
83 52 0.50
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (82 bp):
CCTATTGTGACATTTTATAAAAATGCCGCTAAAGTACTACTCTTGTTGTGGCATTTGTCGAAAAA
ACGCCACTACAGATAGA
Found at i:8175978 original size:42 final size:43
Alignment explanation
Indices: 8175885--8176297 Score: 124
Period size: 42 Copynumber: 9.8 Consensus size: 43
8175875 GAGGTAATTA
**
8175885 GTGACGTTTGTATCCAAAAACGTCGCTATAGATATGACCTTTT
1 GTGACGTTTGTATCCAAAAACACCGCTATAGATATGACCTTTT
* *
8175928 GTGACGTTTG-ATCTAAAAACACCGCTATAGATATGA-TTTTT
1 GTGACGTTTGTATCCAAAAACACCGCTATAGATATGACCTTTT
* * * ** * *
8175969 TTCGGCG-TT-TCTGGAACAAACGA-CGCTATATATATTGACCTGTT
1 GT-GACGTTTGTATCCAA-AAAC-ACCGCTATAGATA-TGACCTTTT
* * * * ** * **
8176013 GCGGCATTTGT-TCCAGAAATGCCGCTATAAATATGAATTTTT
1 GTGACGTTTGTATCCAAAAACACCGCTATAGATATGACCTTTT
* * * *** *
8176055 ATGGCGTTT-T-T-AAACAAATGTCGTTATAGATATTGACCTTTT
1 GTGACGTTTGTATCCAA-AAACACCGCTATAGATA-TGACCTTTT
* ** * * *
8176097 GCGAAATTTGT-TCCAAAAACGCCACTATAGATCTTGACCTTTT
1 GTGACGTTTGTATCCAAAAACACCGCTATAGAT-ATGACCTTTT
* * * ** *
8176140 GCGGCGTTTGT-TCC-AAAACGCCATTATAGATCTCGACCTTTT
1 GTGACGTTTGTATCCAAAAACACCGCTATAGATAT-GACCTTTT
* * * * **
8176182 G-CAGCGTTTGT-TCCAAAAA-GCCTCTATAGATCTCGATTTTTT
1 GTGA-CGTTTGTATCCAAAAACACCGCTATAGATAT-GACCTTTT
* * * * * *
8176224 GCGGCGTTTGT-TCC-AAAACCCCTCTATAGATCTCAACCTTTT
1 GTGACGTTTGTATCCAAAAACACCGCTATAGATAT-GACCTTTT
* *
8176266 GCGACGTTTGT-TCCAAAAACGCCGCTATAGAT
1 GTGACGTTTGTATCCAAAAACACCGCTATAGAT
8176298 CTTGACCTAT
Statistics
Matches: 285, Mismatches: 65, Indels: 40
0.73 0.17 0.10
Matches are distributed among these distances:
40 1 0.00
41 31 0.11
42 160 0.56
43 83 0.29
44 9 0.03
45 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (43 bp):
GTGACGTTTGTATCCAAAAACACCGCTATAGATATGACCTTTT
Found at i:8176099 original size:84 final size:85
Alignment explanation
Indices: 8175902--8176125 Score: 220
Period size: 84 Copynumber: 2.7 Consensus size: 85
8175892 TTGTATCCAA
* * * ** * * * *
8175902 AAACGTCGCTATAGATA-TGACCTTTTGTGACGTTTGATCTAAAAACACCGCTATAGATATGATT
1 AAACGACGCTATAGATATTGACCTGTTGCGAAATTTGTTCCAAAAACGCCGCTATAAATATGATT
* *
8175966 TTTTTCGGCGTTTCTGGAAC
66 TTTATCGGCGTTTCTGAAAC
* ** * *
8175986 AAACGACGCTATATATATTGACCTGTTGCGGCATTTGTTCCAGAAATGCCGCTATAAATATGAAT
1 AAACGACGCTATAGATATTGACCTGTTGCGAAATTTGTTCCAAAAACGCCGCTATAAATATG-AT
*
8176051 TTTTAT-GGCGTTT-TTAAAC
65 TTTTATCGGCGTTTCTGAAAC
* * * * *
8176070 AAATGTCGTTATAGATATTGACCTTTTGCGAAATTTGTTCCAAAAACGCCACTATA
1 AAACGACGCTATAGATATTGACCTGTTGCGAAATTTGTTCCAAAAACGCCGCTATA
8176126 GATCTTGACC
Statistics
Matches: 113, Mismatches: 25, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
84 65 0.58
85 41 0.36
86 7 0.06
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (85 bp):
AAACGACGCTATAGATATTGACCTGTTGCGAAATTTGTTCCAAAAACGCCGCTATAAATATGATT
TTTATCGGCGTTTCTGAAAC
Found at i:8176140 original size:43 final size:43
Alignment explanation
Indices: 8176079--8176313 Score: 280
Period size: 42 Copynumber: 5.5 Consensus size: 43
8176069 CAAATGTCGT
* * **
8176079 TATAGATATTGACCTTTTGCGAAATTTGTTCCAAAAACGCCAC
1 TATAGATCTCGACCTTTTGCGACGTTTGTTCCAAAAACGCCAC
* * *
8176122 TATAGATCTTGACCTTTTGCGGCGTTTGTTCC-AAAACGCCAT
1 TATAGATCTCGACCTTTTGCGACGTTTGTTCCAAAAACGCCAC
*
8176164 TATAGATCTCGACCTTTTGC-AGCGTTTGTTCCAAAAA-GCCTC
1 TATAGATCTCGACCTTTTGCGA-CGTTTGTTCCAAAAACGCCAC
** * * *
8176206 TATAGATCTCGATTTTTTGCGGCGTTTGTTCC-AAAACCCCTC
1 TATAGATCTCGACCTTTTGCGACGTTTGTTCCAAAAACGCCAC
* *
8176248 TATAGATCTCAACCTTTTGCGACGTTTGTTCCAAAAACGCCGC
1 TATAGATCTCGACCTTTTGCGACGTTTGTTCCAAAAACGCCAC
* *
8176291 TATAGATCTTGACCTATTGCGAC
1 TATAGATCTCGACCTTTTGCGAC
8176314 ATTTTTTGTT
Statistics
Matches: 165, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
41 4 0.02
42 101 0.61
43 60 0.36
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (43 bp):
TATAGATCTCGACCTTTTGCGACGTTTGTTCCAAAAACGCCAC
Found at i:8180926 original size:27 final size:26
Alignment explanation
Indices: 8180890--8180942 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
8180880 CTAATTAAAA
*
8180890 AATAAAATTTAGCATATAATTATGTG
1 AATAAAATTTAACATATAATTATGTG
*
8180916 AATATAAATTTAACATATAGTTATGTG
1 AATA-AAATTTAACATATAATTATGTG
8180943 TATGCCAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (26 bp):
AATAAAATTTAACATATAATTATGTG
Found at i:8183800 original size:5 final size:5
Alignment explanation
Indices: 8183777--8184078 Score: 60
Period size: 5 Copynumber: 59.6 Consensus size: 5
8183767 TAAACCTGAA
* * *
8183777 ATAAT -TAAT -TAAT -TAAT ATAAT ATAAT AATACT ATAAT ACATT GCATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT --ATAAT
** * * * * *
8183827 AATAAT ATTTT ATACT AT-AT ATACT ATAAT ATAAAT ATATGT GTACT
1 -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT-AAT ATA-AT ATAAT
* * *
8183874 ATGAT AT-AT GAT-AT GTAAT AT-AT AACTAAT ATAAT AT-AT A-CAT
1 ATAAT ATAAT -ATAAT ATAAT ATAAT -A-TAAT ATAAT ATAAT ATAAT
* * *
8183917 ATAAT AT-AT AATATAT ATAAAT ATACT ATAAC AT-AT AT-AT ATTAT
1 ATAAT ATAAT -ATA-AT AT-AAT ATAAT ATAAT ATAAT ATAAT ATAAT
* * * *
8183962 ATTAT ATAGT ATATT ATTAT -TATAT ATAGTAT ATAAT AT-AT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATA-AT ATA--AT ATAAT ATAAT ATAAT
* ** * ** *
8184008 ATACT ATGTT GT-AT AATAAT ATACC ATACT ATACTAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATA--AT ATAAT ATAAT
*
8184055 ATATAT ATACT AT-AT AATAAT ATA
1 ATA-AT ATAAT ATAAT -ATAAT ATA
8184079 CTAAATGTGT
Statistics
Matches: 222, Mismatches: 45, Indels: 60
0.68 0.14 0.18
Matches are distributed among these distances:
4 42 0.19
5 126 0.57
6 36 0.16
7 18 0.08
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (5 bp):
ATAAT
Found at i:8183849 original size:2 final size:2
Alignment explanation
Indices: 8183837--8184078 Score: 114
Period size: 2 Copynumber: 125.0 Consensus size: 2
8183827 AATAATATTT
* * *
8183837 TA TA CTA TA TA TA CTA TA -A TA TA AA TA TA TG TG TA CTA TGA TA
1 TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA T-A TA
* *
8183880 TA TGA TA TG TA -A TA TA TA -A CTA -A TA TA -A TA TA TA CA TA TA
1 TA T-A TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
* *
8183920 -A TA TA TA -A TA TA TA TA AA TA TA CTA TA -A CA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
8183959 TA TA T- TA TA TA GTA TA T- TA T- TA T- TA TA TA TA GTA TA TA -A
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * *
8183998 TA TA TA TA -A TA TA CTA TG T- TG TA TA -A TA -A TA TA CCA TA CTA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA -TA
8184039 TA CTA TA TA -A TA TA -A TA TA TA TA TA CTA TA TA -A TA -A TA TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
8184079 CTAAATGTGT
Statistics
Matches: 189, Mismatches: 15, Indels: 72
0.68 0.05 0.26
Matches are distributed among these distances:
1 22 0.12
2 141 0.75
3 26 0.14
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.43
Consensus pattern (2 bp):
TA
Found at i:8183885 original size:7 final size:7
Alignment explanation
Indices: 8183792--8184078 Score: 115
Period size: 7 Copynumber: 39.7 Consensus size: 7
8183782 TAATTAATTA
8183792 ATATAAT
1 ATATAAT
8183799 ATAATAAT
1 AT-ATAAT
8183807 ACTATAAT
1 A-TATAAT
*
8183815 ACAT--T
1 ATATAAT
**
8183820 GCATAAT
1 ATATAAT
8183827 A-ATAAT
1 ATATAAT
* *
8183833 ATTTTAT
1 ATATAAT
8183840 ACTATATAT
1 A-TATA-AT
8183849 ACTATAAT
1 A-TATAAT
8183857 ATA-AAT
1 ATATAAT
**
8183863 ATATGTGT
1 ATAT-AAT
*
8183871 ACTATGAT
1 A-TATAAT
*
8183879 ATATGAT
1 ATATAAT
*
8183886 ATGTAAT
1 ATATAAT
8183893 ATATAACT
1 ATATAA-T
8183901 AATATAAT
1 -ATATAAT
*
8183909 ATAT-AC
1 ATATAAT
8183915 ATATAAT
1 ATATAAT
8183922 ATATAAT
1 ATATAAT
8183929 ATAT-AT
1 ATATAAT
*
8183935 AAAT-AT
1 ATATAAT
*
8183941 ACTATAAC
1 A-TATAAT
8183949 ATATATAT
1 ATATA-AT
*
8183957 ATTATATT
1 A-TATAAT
*
8183965 ATATAGT
1 ATATAAT
*
8183972 ATATTAT
1 ATATAAT
*
8183979 -TATTAT
1 ATATAAT
*
8183985 ATATAGT
1 ATATAAT
8183992 ATATAAT
1 ATATAAT
8183999 ATAT-AT
1 ATATAAT
*
8184005 AATATACT
1 -ATATAAT
* **
8184013 ATGTTGT
1 ATATAAT
8184020 ATAATAAT
1 AT-ATAAT
**
8184028 ATACCAT
1 ATATAAT
*
8184035 ACTATACT
1 A-TATAAT
8184043 ATATAAT
1 ATATAAT
8184050 ATAATATAT
1 AT-ATA-AT
*
8184059 ATATACT
1 ATATAAT
8184066 ATATAAT
1 ATATAAT
8184073 AATATA
1 -ATATA
8184079 CTAAATGTGT
Statistics
Matches: 213, Mismatches: 42, Indels: 49
0.70 0.14 0.16
Matches are distributed among these distances:
5 4 0.02
6 33 0.15
7 101 0.47
8 49 0.23
9 26 0.12
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (7 bp):
ATATAAT
Found at i:8186405 original size:96 final size:95
Alignment explanation
Indices: 8186239--8186529 Score: 397
Period size: 96 Copynumber: 3.0 Consensus size: 95
8186229 AGTAGTAACG
* * **
8186239 AGTAGATTCCATGATCCATAAATTAGGAACAAACATATTTTTCAGTGAAAACAGGAAACCATATA
1 AGTAGATTCCATGATCCATAAATCAGGAACTATTATA-TTTTCAGTGAAAACAGGAAACCATATA
8186304 ACACATTTCAGGTAACCATAGTTCATAAAGC-
65 ACACATTTCAGGTAACCATAGTTCATAAA-CT
* * *
8186335 ATTAGATTCCAAGATCCATAAATCAGGAATTATTATATTTTCCAGTGAAAACAGGAAACCATATA
1 AGTAGATTCCATGATCCATAAATCAGGAACTATTATATTTT-CAGTGAAAACAGGAAACCATATA
*
8186400 ACACATTTTAGGTAACCATAGTTCATAAACT
65 ACACATTTCAGGTAACCATAGTTCATAAACT
* * * * *
8186431 AGTAGATTTCATGATCTATAAATCATGAACTATTATATTTTCAGGGGAAAATAGGAAA-CATATA
1 AGTAGATTCCATGATCCATAAATCAGGAACTATTATATTTTCA-GTGAAAACAGGAAACCATATA
* *
8186495 ACACATTTCAAGTAACCATAGTTCATAAACC
65 ACACATTTCAGGTAACCATAGTTCATAAACT
8186526 AGTA
1 AGTA
8186530 AATCAGGAAA
Statistics
Matches: 173, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
95 45 0.26
96 128 0.74
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (95 bp):
AGTAGATTCCATGATCCATAAATCAGGAACTATTATATTTTCAGTGAAAACAGGAAACCATATAA
CACATTTCAGGTAACCATAGTTCATAAACT
Found at i:8190781 original size:32 final size:32
Alignment explanation
Indices: 8190745--8190829 Score: 116
Period size: 32 Copynumber: 2.7 Consensus size: 32
8190735 GGAGTGCTTT
* * * *
8190745 GGGGCCTGAGAGCCTAGCTAAAAAGGTTTATC
1 GGGGCCTCAGAGCCTACCCAAAAAAGTTTATC
*
8190777 GGGGCCTCAGAGTCTACCCAAAAAAGTTTATC
1 GGGGCCTCAGAGCCTACCCAAAAAAGTTTATC
*
8190809 AGGGCCTCAGAGCCTACCCAA
1 GGGGCCTCAGAGCCTACCCAA
8190830 GGGTCACCTT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.29, C:0.26, G:0.26, T:0.19
Consensus pattern (32 bp):
GGGGCCTCAGAGCCTACCCAAAAAAGTTTATC
Found at i:8191113 original size:96 final size:94
Alignment explanation
Indices: 8190969--8191256 Score: 282
Period size: 96 Copynumber: 3.0 Consensus size: 94
8190959 AGTAGTAACT
* * * * *
8190969 AATAGATTTTATGATCCATAAATCAGGAACAATCATATTTT-TCAGTGAAATCATGAAACCATAT
1 AATAGATTCTGTGATCCATAAATAAGGAACTATTATATTTTCT-AGTGAAAT-ATGAAACCATAT
8191033 AAAATGTTTCAGGTAACCATAGTTCATAAACC
64 AAAAT-TTTCAGGTAACCATAGTTCATAAACC
* * *
8191065 AATAGATTACAT-T-ATCTATAAGTTAGGAACTATTATATTTTCTAGTGAAA-ATAGAAAACCAT
1 AATAGATT-C-TGTGATCCATAAATAAGGAACTATTATATTTTCTAGTGAAATAT-G-AAACCAT
*
8191127 ATAACACATTTT-AGGTAACTATAGTTCATAAACC
62 ATAA-A-ATTTTCAGGTAACCATAGTTCATAAACC
* * * * * *
8191161 AGTAGATTCTGTGATCCATAAATAAGGAATTATTATATTTTCAAGTGAAAATAGGAAATCAGATA
1 AATAGATTCTGTGATCCATAAATAAGGAACTATTATATTTTCTAGTG-AAATATGAAACCATATA
*
8191226 ACACA-TTTCAAGTAACCATAGTTCATAAACC
65 A-A-ATTTTCAGGTAACCATAGTTCATAAACC
8191257 TGGAAATCAG
Statistics
Matches: 162, Mismatches: 18, Indels: 24
0.79 0.09 0.12
Matches are distributed among these distances:
94 3 0.02
95 6 0.04
96 139 0.86
97 10 0.06
98 4 0.02
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (94 bp):
AATAGATTCTGTGATCCATAAATAAGGAACTATTATATTTTCTAGTGAAATATGAAACCATATAA
AATTTTCAGGTAACCATAGTTCATAAACC
Found at i:8198036 original size:12 final size:12
Alignment explanation
Indices: 8198019--8198043 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8198009 TATTCGAATA
8198019 TTTTTTGCTTGG
1 TTTTTTGCTTGG
8198031 TTTTTTGCTTGG
1 TTTTTTGCTTGG
8198043 T
1 T
8198044 AGCTTGTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.24, T:0.68
Consensus pattern (12 bp):
TTTTTTGCTTGG
Found at i:8198527 original size:20 final size:21
Alignment explanation
Indices: 8198490--8198706 Score: 90
Period size: 20 Copynumber: 10.5 Consensus size: 21
8198480 ATTAATTAAT
*
8198490 TAATATAATATA-ATAATACTA
1 TAATATAATACATAT-ATACTA
*
8198511 TAATATAATACATA-ATAATAA
1 TAATATAATACATATATACT-A
* * *
8198532 TAATATTATGTAC-TATATATTG
1 TAATA-TA-ATACATATATACTA
* *
8198554 TAATATAAATATATATGTACTA
1 TAATAT-AATACATATATACTA
*
8198576 TGATAT-ATA-ATATATACATA
1 TAATATAATACATATATAC-TA
8198596 TAATAT-ATA-ATATATA-TA
1 TAATATAATACATATATACTA
*
8198614 -AATATACTATA-ATGTATA--A
1 TAATATA--ATACATATATACTA
*
8198633 TAATAT-A-GCATATTATACTA
1 TAATATAATACATA-TATACTA
*
8198653 TAATAT-ATATATATATA-TA
1 TAATATAATACATATATACTA
*
8198672 TACATATAATATACTATATA-TA
1 TA-ATATAATACA-TATATACTA
8198694 TATATATATATAC
1 TA-ATATA-ATAC
8198707 TAAATGTGTC
Statistics
Matches: 155, Mismatches: 20, Indels: 40
0.72 0.09 0.19
Matches are distributed among these distances:
17 8 0.05
18 6 0.04
19 12 0.08
20 54 0.35
21 28 0.18
22 37 0.24
23 10 0.06
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (21 bp):
TAATATAATACATATATACTA
Found at i:8198567 original size:2 final size:2
Alignment explanation
Indices: 8198556--8198705 Score: 120
Period size: 2 Copynumber: 76.5 Consensus size: 2
8198546 ATATATTGTA
* * *
8198556 AT AT AA AT AT AT AT GT ACT AT GAT AT AT A- AT AT AT AC AT AT A-
1 AT AT AT AT AT AT AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT AT
* *
8198598 AT AT AT A- AT AT AT AT AA AT AT ACT AT A- AT GT AT A- AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT
* *
8198637 AT AGC AT AT -T AT ACT AT A- AT AT AT AT AT AT AT AT AT AC AT AT
1 AT A-T AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8198679 A- AT AT ACT AT AT AT AT AT AT AT AT AT A
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT A
8198706 CTAAATGTGT
Statistics
Matches: 119, Mismatches: 14, Indels: 30
0.73 0.09 0.18
Matches are distributed among these distances:
1 9 0.08
2 99 0.83
3 11 0.09
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.42
Consensus pattern (2 bp):
AT
Found at i:8198576 original size:29 final size:30
Alignment explanation
Indices: 8198525--8198705 Score: 106
Period size: 28 Copynumber: 6.3 Consensus size: 30
8198515 ATAATACATA
8198525 ATAATA-ATAATAT-TATGTACTATATATT
1 ATAATATATAATATATATGTACTATATATT
*
8198553 GTAATATA-AATATATATGTACTATGATA-T
1 ATAATATATAATATATATGTACTAT-ATATT
*
8198582 ATAATATATACATATA-ATATA-TA-ATATAT
1 ATAATATATA-ATATATATGTACTATATAT-T
* *
8198611 ATAA-ATATACTATA-ATGTA-TA-ATAAT
1 ATAATATATAATATATATGTACTATATATT
** * *
8198637 ATAGCATATTATACTATA-ATA-TATATA-T
1 ATAATATATAATA-TATATGTACTATATATT
*
8198665 AT-ATATATACATATA-ATATACTATATATAT
1 ATAATATATA-ATATATATGTACTATATAT-T
8198695 ATATATATATA
1 ATA-ATATATA
8198706 CTAAATGTGT
Statistics
Matches: 122, Mismatches: 13, Indels: 32
0.73 0.08 0.19
Matches are distributed among these distances:
26 5 0.04
27 31 0.25
28 33 0.27
29 30 0.25
30 11 0.09
31 5 0.04
32 7 0.06
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (30 bp):
ATAATATATAATATATATGTACTATATATT
Found at i:8199261 original size:25 final size:27
Alignment explanation
Indices: 8199233--8199293 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 27
8199223 TTTGCAGACC
* *
8199233 CAAAATTATAATAA-CCCAA-TCGGCT
1 CAAAATTACAACAAGCCCAATTCGGCT
*
8199258 CAAAATTACAACAAGCCCAATTGGGCT
1 CAAAATTACAACAAGCCCAATTCGGCT
8199285 C-AAATTACA
1 CAAAATTACA
8199294 TCAACCGACC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 12 0.39
26 13 0.42
27 6 0.19
ACGTcount: A:0.44, C:0.25, G:0.10, T:0.21
Consensus pattern (27 bp):
CAAAATTACAACAAGCCCAATTCGGCT
Found at i:8199764 original size:16 final size:17
Alignment explanation
Indices: 8199739--8199771 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8199729 AAATAAACAA
*
8199739 AAAAAGAAAACATAAAG
1 AAAAAGAAAACACAAAG
8199756 AAAAA-AAAACACAAAG
1 AAAAAGAAAACACAAAG
8199772 CTAAATAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.79, C:0.09, G:0.09, T:0.03
Consensus pattern (17 bp):
AAAAAGAAAACACAAAG
Found at i:8211341 original size:28 final size:28
Alignment explanation
Indices: 8211301--8211354 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
8211291 TTTCAAAGAA
* *
8211301 ACTAAGTATGATTTTCAGAAGTTTCTAG
1 ACTAAGTATGATTTTCAAAAATTTCTAG
*
8211329 ACTAAGTCTGATTTTCAAAAATTTCT
1 ACTAAGTATGATTTTCAAAAATTTCT
8211355 TGATAATTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (28 bp):
ACTAAGTATGATTTTCAAAAATTTCTAG
Found at i:8211990 original size:134 final size:133
Alignment explanation
Indices: 8211795--8212285 Score: 556
Period size: 134 Copynumber: 3.7 Consensus size: 133
8211785 TAATGTTTAA
* * * * *
8211795 TTTCCAGATTTGATCTTCCCTGAGGAACAATGGGAAAAAAT-TACCTCGATTCAATCTTCCCTGA
1 TTTCCAGATTTGATCTTCCCTAAGGAACAGT-GGAACAAATCTGCCTCGATTCAATATTCCCTGA
*
8211859 AGAATAGTGGAATGAATCAACGTTTCCATATCTGATTTACCCT-AAAGAAACAGCAGAGCAGATT
65 AGAATAGTGGAATGAATCAACGTTTCCATATCTGATTTACCCTGAAA-AAACAGCGGAGCAGA-T
*
8211923 CCCATT
128 CCCTTT
* * *
8211929 TTTCCAAATTTGATCTTCCCTAAGGAACAGTGGAACAAATCTGCCTTGATTTAATATTCCCTGAA
1 TTTCCAGATTTGATCTTCCCTAAGGAACAGTGGAACAAATCTGCCTCGATTCAATATTCCCTGAA
* * *
8211994 GAATAGTGGAATGAATCAACGTTTCCATATCTGAATTATCCTGAAAAAGA-AGTGGAGCAGATCC
66 GAATAGTGGAATGAATCAACGTTTCCATATCTGATTTACCCTGAAAAA-ACAGCGGAGCAGATCC
8212058 CTTT
130 CTTT
* * * ** * *
8212062 TTTCTAGATTTGATATTCCTTAAAAAAGCAGTGGAACAAATCTGACTCAATTCAATATTCCCTGA
1 TTTCCAGATTTGATCTTCCCTAAGGAA-CAGTGGAACAAATCTGCCTCGATTCAATATTCCCTGA
* * * * * * * * * *
8212127 AGAACAATGGAATGAATTAATGTTTCAAGATCTAATCTACACTGAAAAAACAGCGGAGCATATCC
65 AGAATAGTGGAATGAATCAACGTTTCCATATCTGATTTACCCTGAAAAAACAGCGGAGCAGATCC
8212192 CTTT
130 CTTT
* * * * * * * *
8212196 TTTCTAGATTTGATCTTCACTGAGGAATAGTGGAACAAATCTTCCTCGATTCAATCTTACCTAAA
1 TTTCCAGATTTGATCTTCCCTAAGGAACAGTGGAACAAATCTGCCTCGATTCAATATTCCCTGAA
* *
8212261 TAATAGTGGAATGAATCAACATTTC
66 GAATAGTGGAATGAATCAACGTTTC
8212286 TAGATTTTAT
Statistics
Matches: 297, Mismatches: 55, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
133 86 0.29
134 207 0.70
135 4 0.01
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31
Consensus pattern (133 bp):
TTTCCAGATTTGATCTTCCCTAAGGAACAGTGGAACAAATCTGCCTCGATTCAATATTCCCTGAA
GAATAGTGGAATGAATCAACGTTTCCATATCTGATTTACCCTGAAAAAACAGCGGAGCAGATCCC
TTT
Found at i:8212298 original size:133 final size:133
Alignment explanation
Indices: 8211795--8212343 Score: 535
Period size: 134 Copynumber: 4.1 Consensus size: 133
8211785 TAATGTTTAA
* * * * * *
8211795 TTTCCAGATTTGATCTTCCCTGAGGAACAATGGGAAAAAAT-TACCTCGATTCAATCTTCCCTGA
1 TTTCCAGATTTGATCTTCACTAAGGAACAGT-GGAACAAATCTGCCTCGATTCAATATTCCCTGA
* * * *
8211859 AGAATAGTGGAATGAATCAACGTTTCCATATCTGATTTACC-CTAAAGAAACAGCAGAGCAGATT
65 AGAATAGTGGAATGAATCAACGTTTCCAGATCTAATCTACCACTAAA-AAACAGCGGAGCAGA-T
*
8211923 CCCATT
128 CCCTTT
* * * *
8211929 TTTCCAAATTTGATCTTCCCTAAGGAACAGTGGAACAAATCTGCCTTGATTTAATATTCCCTGAA
1 TTTCCAGATTTGATCTTCACTAAGGAACAGTGGAACAAATCTGCCTCGATTCAATATTCCCTGAA
* * *
8211994 GAATAGTGGAATGAATCAACGTTTCCATATCTGAAT-TATC-CTGAAAAAGA-AGTGGAGCAGAT
66 GAATAGTGGAATGAATCAACGTTTCCAGATCT-AATCTACCACT-AAAAA-ACAGCGGAGCAGAT
8212056 CCCTTT
128 CCCTTT
* * ** * *
8212062 TTTCTAGATTTGATATTC-CTTAAAAAAGCAGTGGAACAAATCTGACTCAATTCAATATTCCCTG
1 TTTCCAGATTTGATCTTCAC-TAAGGAA-CAGTGGAACAAATCTGCCTCGATTCAATATTCCCTG
* * * * * *
8212126 AAGAACAATGGAATGAATTAATGTTTCAAGATCTAATCTA-CACTGAAAAAACAGCGGAGCATAT
64 AAGAATAGTGGAATGAATCAACGTTTCCAGATCTAATCTACCACT-AAAAAACAGCGGAGCAGAT
8212190 CCCTTT
128 CCCTTT
* * * * * * *
8212196 TTTCTAGATTTGATCTTCACTGAGGAATAGTGGAACAAATCTTCCTCGATTCAATCTTACCTAAA
1 TTTCCAGATTTGATCTTCACTAAGGAACAGTGGAACAAATCTGCCTCGATTCAATATTCCCTGAA
* * * * * * *
8212261 TAATAGTGGAATGAATCAACATTTCTAGATTTTATCTACCAC-AAAGAGCAGCGGAGCAGAT-CC
66 GAATAGTGGAATGAATCAACGTTTCCAGATCTAATCTACCACTAAAAAACAGCGGAGCAGATCCC
8212324 -TT
131 TTT
*
8212326 TTT-CAGATTTCATCTTCA
1 TTTCCAGATTTGATCTTCA
8212344 AGTATCTCTC
Statistics
Matches: 349, Mismatches: 55, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
129 13 0.04
130 5 0.01
131 2 0.01
132 17 0.05
133 99 0.28
134 206 0.59
135 7 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (133 bp):
TTTCCAGATTTGATCTTCACTAAGGAACAGTGGAACAAATCTGCCTCGATTCAATATTCCCTGAA
GAATAGTGGAATGAATCAACGTTTCCAGATCTAATCTACCACTAAAAAACAGCGGAGCAGATCCC
TTT
Found at i:8212526 original size:3 final size:3
Alignment explanation
Indices: 8212518--8212614 Score: 178
Period size: 3 Copynumber: 32.7 Consensus size: 3
8212508 CCGGAGAACG
8212518 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
8212565 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8212613 TT
1 TT
8212615 TGTATATTTT
Statistics
Matches: 91, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
2 2 0.02
3 89 0.98
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:8213410 original size:60 final size:60
Alignment explanation
Indices: 8213336--8213459 Score: 203
Period size: 60 Copynumber: 2.1 Consensus size: 60
8213326 GTGAATGCTA
* * * *
8213336 GTTTAGGCTCGGGGGTTAAGAGGGAGTAGTAAAGGTGGTCGTTAGCCCCTCGTCGAGGCT
1 GTTTAGGCTCGGGGGCTAAGAGGGAGTAGTAAAGGTGGTCATTAGCCCCTCGTCAAGGCC
*
8213396 GTTTAGGCTTGGGGGCTAAGAGGGAGTAGTAAAGGTGGTCATTAGCCCCTCGTCAAGGCC
1 GTTTAGGCTCGGGGGCTAAGAGGGAGTAGTAAAGGTGGTCATTAGCCCCTCGTCAAGGCC
8213456 GTTT
1 GTTT
8213460 TGGGCGGGCG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.19, C:0.17, G:0.38, T:0.26
Consensus pattern (60 bp):
GTTTAGGCTCGGGGGCTAAGAGGGAGTAGTAAAGGTGGTCATTAGCCCCTCGTCAAGGCC
Found at i:8215561 original size:15 final size:15
Alignment explanation
Indices: 8215538--8215569 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8215528 AGACGATATA
8215538 TTTTAAAAATTAAAT
1 TTTTAAAAATTAAAT
*
8215553 TTTTTAAAATTAAAT
1 TTTTAAAAATTAAAT
8215568 TT
1 TT
8215570 GTTTTTTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTTAAAAATTAAAT
Found at i:8216861 original size:25 final size:25
Alignment explanation
Indices: 8216833--8216916 Score: 141
Period size: 25 Copynumber: 3.4 Consensus size: 25
8216823 TTAAGATATA
*
8216833 TGTGATATTGTGTATTTGTACCCTT
1 TGTGATATCGTGTATTTGTACCCTT
8216858 TGTGATATCGTGTATTTGTACCCTT
1 TGTGATATCGTGTATTTGTACCCTT
*
8216883 TGTGATATCGTGTATTTATACCCTT
1 TGTGATATCGTGTATTTGTACCCTT
*
8216908 TGTAATATC
1 TGTGATATC
8216917 TACATTCATA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 56 1.00
ACGTcount: A:0.19, C:0.14, G:0.18, T:0.49
Consensus pattern (25 bp):
TGTGATATCGTGTATTTGTACCCTT
Found at i:8219150 original size:23 final size:23
Alignment explanation
Indices: 8219120--8219202 Score: 123
Period size: 23 Copynumber: 3.7 Consensus size: 23
8219110 TAAACAATAA
* *
8219120 AAAATGTGTCATAAAGATAGAAG
1 AAAATGTGTCATAAAAACAGAAG
*
8219143 AAAATGTGTCATAAAAACATAAG
1 AAAATGTGTCATAAAAACAGAAG
*
8219166 AAAATGTATCATAAAAACAG-AG
1 AAAATGTGTCATAAAAACAGAAG
8219188 AAAATGTGTCATAAA
1 AAAATGTGTCATAAA
8219203 GGTCGAATTA
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
22 16 0.30
23 38 0.70
ACGTcount: A:0.55, C:0.07, G:0.16, T:0.22
Consensus pattern (23 bp):
AAAATGTGTCATAAAAACAGAAG
Found at i:8219170 original size:46 final size:45
Alignment explanation
Indices: 8219111--8219202 Score: 132
Period size: 45 Copynumber: 2.0 Consensus size: 45
8219101 AAAAAAGGTT
* * *
8219111 AAACAATAAAAAATGTGTCATAAAGATAGAAGAAAATGTGTCATAA
1 AAACAATAAAAAATGTATCATAAAAACAG-AGAAAATGTGTCATAA
8219157 AAAC-ATAAGAAAATGTATCATAAAAACAGAGAAAATGTGTCATAA
1 AAACAATAA-AAAATGTATCATAAAAACAGAGAAAATGTGTCATAA
8219202 A
1 A
8219203 GGTCGAATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
45 21 0.50
46 21 0.50
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.21
Consensus pattern (45 bp):
AAACAATAAAAAATGTATCATAAAAACAGAGAAAATGTGTCATAA
Found at i:8222268 original size:3 final size:3
Alignment explanation
Indices: 8222260--8222330 Score: 65
Period size: 3 Copynumber: 24.0 Consensus size: 3
8222250 TAAATAAATA
* * * * * *
8222260 AAT AAT AAT ATTT TAT AAT AAT ATT AA- AAT AAT AGT CAT AA- AAA
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8222304 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
8222331 TTAGGTCGGA
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
2 4 0.07
3 49 0.91
4 1 0.02
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:8223012 original size:20 final size:20
Alignment explanation
Indices: 8222987--8223041 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
8222977 AGAACATCAT
8222987 GCCCGAAGGTCTTATAGATG
1 GCCCGAAGGTCTTATAGATG
8223007 GCCCGAAGGTCTTATAGATG
1 GCCCGAAGGTCTTATAGATG
* *
8223027 GCCCAAAGGACTTAT
1 GCCCGAAGGTCTTAT
8223042 CATCTTGCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (20 bp):
GCCCGAAGGTCTTATAGATG
Found at i:8223117 original size:20 final size:20
Alignment explanation
Indices: 8223092--8223143 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
8223082 GCATCATGCT
8223092 CGAAAGACTTACTGATAGCC
1 CGAAAGACTTACTGATAGCC
* *
8223112 CGAAAGTCTTACTGATGGCC
1 CGAAAGACTTACTGATAGCC
8223132 CGAAAGACTTAC
1 CGAAAGACTTAC
8223144 CAATTTTGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (20 bp):
CGAAAGACTTACTGATAGCC
Found at i:8223656 original size:222 final size:221
Alignment explanation
Indices: 8223213--8223761 Score: 721
Period size: 222 Copynumber: 2.5 Consensus size: 221
8223203 AAATTTCAAT
* * * **
8223213 TTTTCAGAAAAAAATTTAAATGAGAAACTTTGGAAATCATTTTCTCATCTTTTGAAAATCATTTG
1 TTTTCA-AAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTCAT-TTTTGGAAATCACGTG
* * * * * *
8223278 AAATCATCCTGCCCAAAGGTCTTATGGATGGCCCGAACGACTTATCATCTTCCTCGAAAGGCTTA
64 AAAACATCCTGCCCAAAGGTCTTATGGATGACCCGAAGGACTTATCATCCTACTCGAAAAGCTTA
* * *
8223343 TAGATGACCCAAAGGATTTAAGCATCATGCTCGAAAGACTTACTGACTAAGATGGATTTACTAAG
129 TAGATAACCCAAAGGATTTAAGCATCATGCTCGAAAGACTTACTGACCAAGATGGACTTACTAAG
*
8223408 TTAGAAACTTTGGAAATCATTTTCTTAC
194 TAAGAAACTTTGGAAATCATTTTCTTAC
* *
8223436 TTTTCAAAAAAGATTTAAATGAGAAACTTTGGAAATCGCTTTCTCA-TTTTGGAAATCGCGTGAA
1 TTTTCAAAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTGGAAATCACGTGAA
* * *
8223500 AACATCCTGCCCGAAGGTCTTATGGATGACCTGAAGGACTTATCATCCTACTCTAAAAGCTTATA
66 AACATCCTGCCCAAAGGTCTTATGGATGACCCGAAGGACTTATCATCCTACTCGAAAAGCTTATA
*
8223565 GATAACCCGAAA-GATTTAATCATCATGCTCGAAAGACTTACTGATGGCCCAA-A-GGACTTACT
131 GATAACCC-AAAGGATTTAAGCATCATGCTCGAAAGACTTACTGA----CCAAGATGGACTTACT
*
8223627 AAGTAAGAAACTTTGGAAATCGTTTTCTTAC
191 AAGTAAGAAACTTTGGAAATCATTTTCTTAC
*
8223658 TTTCCAAAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTTTGGAAA-CACGTG
1 TTTTCAAAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTCA--TTTTTGGAAATCACGTG
** * * * *
8223722 AAGGCATCCTACTCTAAGGTCTTATAGATGACCCGAAGGA
64 AAAACATCCTGCCCAAAGGTCTTATGGATGACCCGAAGGA
8223762 TTTAAGCATC
Statistics
Matches: 286, Mismatches: 32, Indels: 15
0.86 0.10 0.05
Matches are distributed among these distances:
220 108 0.38
221 3 0.01
222 118 0.41
223 7 0.02
224 41 0.14
225 9 0.03
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (221 bp):
TTTTCAAAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTGGAAATCACGTGAA
AACATCCTGCCCAAAGGTCTTATGGATGACCCGAAGGACTTATCATCCTACTCGAAAAGCTTATA
GATAACCCAAAGGATTTAAGCATCATGCTCGAAAGACTTACTGACCAAGATGGACTTACTAAGTA
AGAAACTTTGGAAATCATTTTCTTAC
Found at i:8223766 original size:183 final size:182
Alignment explanation
Indices: 8223543--8223967 Score: 559
Period size: 183 Copynumber: 2.3 Consensus size: 182
8223533 AAGGACTTAT
* *
8223543 CATCCTACTCTAAAAG-CTTATAGATAACCCGAAAGATTTAATCATCATGCTCGAAAGACTTACT
1 CATCCTACTCT--AAGTCTTATAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACT
**
8223607 GATGGCCCAAAGGACTTACTAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTCCAAAAAAGAT
64 GATGGCCCAAAGGACTTACTAAGTAAGAAACTTTGGAAATCAATTTCTTACTTTCCAAAAAAGAT
* **
8223672 TTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTTTGGAAA-CACGTGAAGG
129 TTAAATAAGAAACTTTGGAAATCACTTTCTCA-TTTTTTGGAAATCACGTGAAAA
* * *
8223726 CATCCTACTCTAAGGTCTTATAGATGACCCGAAGGATTTAAGCATCATGATCGAAAGACTTATTG
1 CATCCTACTCTAA-GTCTTATAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTG
* * *
8223791 ATGGCCCGAAGGACTTACTAAGTAAGAAATTTTGGAAATCAATTTCTTACTTTTCAAAAAAGATT
65 ATGGCCCAAAGGACTTACTAAGTAAGAAACTTTGGAAATCAATTTCTTACTTTCCAAAAAAGATT
* * *
8223856 TAAGTAAGAAATTTTGGAAATCGCTTTCTCATTTTTTGGAAATCACGTGAAAA
130 TAAATAAGAAACTTTGGAAATCACTTTCTCATTTTTTGGAAATCACGTGAAAA
* * * * * * * * *
8223909 CATCATGCCCGAAGTCCCTATTGATGGCCTGAAGGATTT-ATCATCTTGCTCGAAAGACT
1 CATCCTACTCTAAGT-CTTATAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGACT
8223968 ATAGATGACC
Statistics
Matches: 211, Mismatches: 27, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
181 2 0.01
182 31 0.15
183 178 0.84
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (182 bp):
CATCCTACTCTAAGTCTTATAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGACTTACTGA
TGGCCCAAAGGACTTACTAAGTAAGAAACTTTGGAAATCAATTTCTTACTTTCCAAAAAAGATTT
AAATAAGAAACTTTGGAAATCACTTTCTCATTTTTTGGAAATCACGTGAAAA
Found at i:8224023 original size:223 final size:224
Alignment explanation
Indices: 8223742--8224531 Score: 875
Period size: 223 Copynumber: 3.5 Consensus size: 224
8223732 ACTCTAAGGT
*
8223742 CTTATAGATGACCCGAAGGATTTAAGCATCATGATCGAAAGACTTATTGATGGCCCGAAGGACTT
1 CTTATAGATGACCCGAAGGATTTAAGCATCATGATCGAAAGACTTACTGATGGCCCGAAGGACTT
* * ** * *
8223807 ACTAAGTAAGAAATTTTGGAAATCAATTTCTTACTTTTCAAAAAAGATTTAAGTAAGAAATTTTG
66 AATAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAAAAGATTTAAATAAGAAACTTTG
* * *
8223872 GAAATCGCTTTCTCATTTTTTGGAAATCACGTGAAAACATCATGCCCGAA-GTCCCTATTGATGG
131 GAAATCACTTTCTCATTTTTTGGAAATCACATGAAAACATCATGCCCGAAGGT-CCTATGGATGG
* * *
8223936 CCTGAAGGATTTATCATCTTGCTCGAAAGA
195 CCCGAAGGACTTATCATCTTCCTCGAAAGA
* * * * *
8223966 C-TATAGATGACCCGAAGGATTTAAGAATCATGGTTGAAAGACTTACTAATGGCCCGAAGGAGTT
1 CTTATAGATGACCCGAAGGATTTAAGCATCATGATCGAAAGACTTACTGATGGCCCGAAGGACTT
* * * *
8224030 ATTAAGTAAGAAACTTTGGAAGTCGTTTTCTTACTTTTCAGAAAAGATTTAAATGAGAAACTTTG
66 AATAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAAAAGATTTAAATAAGAAACTTTG
* * *
8224095 GAAATCACTTTCTTATTTTTTGGAAATCACATGAAAACATCCTGCCCGAAGGTCTTATGGATGGC
131 GAAATCACTTTCTCATTTTTTGGAAATCACATGAAAACATCATGCCCGAAGGTCCTATGGATGGC
8224160 CCGAAGGACTTATCATCTTCCTCGAAAGA
196 CCGAAGGACTTATCATCTTCCTCGAAAGA
* ** * *
8224189 CTTATAGACGACCTAAATGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTT
1 CTTATAGATGACCCGAAGGATTTAAGCATCATGATCGAAAGACTTACTGATGGCCCGAAGGACTT
8224254 AATAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAAATTTCAATTTTCAGAAAAGATT
66 AATAAGTAAGAAACTTTGGAAATCGTTTTCTTAC---T------TTTC-A-----A-AAAAGATT
* * * ** * * * *
8224319 TAAATGAGAAACTTTGGAAATC-CTGTTCTCATCTTTTGAAAATCATGTGAAATCATCCTGGCCA
115 TAAATAAGAAACTTTGGAAATCACT-TTCTCATTTTTTGGAAATCACATGAAAACATCATGCCCG
* * * * ** *
8224383 AATGTCTTATGGATGGCTCGAATGACTTATCATCTTGATCGAAAGG
179 AAGGTCCTATGGATGGCCCGAAGGACTTATCATCTTCCTCGAAAGA
* * * * * * *
8224429 CCTATAGATAACCCGAAAGATATAAGCATCATGCTCGAAATACTTACTGATGGCTCGAAGGACTT
1 CTTATAGATGACCCGAAGGATTTAAGCATCATGATCGAAAGACTTACTGATGGCCCGAAGGACTT
* * ** *
8224494 AATAAATAATAAACTTTGGAAATCACTTTCCTACTTTT
66 AATAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTT
8224532 TAACTTATAA
Statistics
Matches: 483, Mismatches: 64, Indels: 31
0.84 0.11 0.05
Matches are distributed among these distances:
223 196 0.41
224 89 0.18
227 1 0.00
231 3 0.01
233 4 0.01
234 1 0.00
237 1 0.00
239 2 0.00
240 186 0.39
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (224 bp):
CTTATAGATGACCCGAAGGATTTAAGCATCATGATCGAAAGACTTACTGATGGCCCGAAGGACTT
AATAAGTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAAAAGATTTAAATAAGAAACTTTG
GAAATCACTTTCTCATTTTTTGGAAATCACATGAAAACATCATGCCCGAAGGTCCTATGGATGGC
CCGAAGGACTTATCATCTTCCTCGAAAGA
Found at i:8224088 original size:406 final size:403
Alignment explanation
Indices: 8223335--8224193 Score: 1165
Period size: 406 Copynumber: 2.1 Consensus size: 403
8223325 TCTTCCTCGA
* * *
8223335 AAGG-CTTATAGATGACCCAAAGGATTTAAGCATCATGCTCGAAAGACTTACTGACTAAGATGGA
1 AAGGTCTTATAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTATTGACTAAGAAGGA
* * * *
8223399 TTTACTAAGTTAGAAACTTTGGAAATCATTTTCTTACTTTTCAAAAAAGATTTAAATGAGAAACT
66 CTTACTAAGTAAGAAACTTTGGAAATCAATTTCTTACTTTTCAAAAAAGATTTAAATAAGAAACT
* * *
8223464 TTGGAAATCGCTTTCTCATTTTGGAAATCGCGTGAAAACATCCTGCCCGAAGGTCTTATGGATGA
131 TTGGAAATCGCTTTCTCATTTTGGAAATCACGTGAAAACATCATGCCCGAAGGTCCTATGGATGA
* **
8223529 CCTGAAGGACTTATCATCCTACTCTAAAAGCTTATAGATAACCCGAAAGATTTAATCATCATGCT
196 CCTGAAGGACTTATCATCCTACTCGAAAAGCTTATAGATAACCCGAAAGATTTAAGAATCATGCT
*
8223594 CGAAAGACTTACTGATGGCCCAAAGGACTTACTAAGTAAGAAACTTTGGAAATCGTTTTCTTACT
261 CGAAAGACTTACTAATGGCCCAAAGGACTTACTAAGTAAGAAACTTTGGAAATCGTTTTCTTACT
*
8223659 TTCCAAAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTTTGGAAA-CACGTGA
326 TTCCAAAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTCA-TTTTTTGGAAATCACATGA
** * *
8223723 AGGCATCCTACTCT
390 AAACATCCTACCCG
* **
8223737 AAGGTCTTATAGATGACCCGAAGGATTTAAGCATCATGATCGAAAGACTTATTGA-TGGCCCGAA
1 AAGGTCTTATAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTATTGACT---AAGAA
* *
8223801 GGACTTACTAAGTAAGAAATTTTGGAAATCAATTTCTTACTTTTCAAAAAAGATTTAAGTAAGAA
63 GGACTTACTAAGTAAGAAACTTTGGAAATCAATTTCTTACTTTTCAAAAAAGATTTAAATAAGAA
*
8223866 ATTTTGGAAATCGCTTTCTCATTTTTTGGAAATCACGTGAAAACATCATGCCCGAA-GTCCCTAT
128 ACTTTGGAAATCGCTTTCTCA--TTTTGGAAATCACGTGAAAACATCATGCCCGAAGGT-CCTAT
* * * * * * *
8223930 TGATGGCCTGAAGGATTTATCATCTTGCTCG-AAAGAC-TATAGATGACCCGAAGGATTTAAGAA
190 GGATGACCTGAAGGACTTATCATCCTACTCGAAAAG-CTTATAGATAACCCGAAAGATTTAAGAA
* * * * * *
8223993 TCATGGTTGAAAGACTTACTAATGGCCCGAAGGAGTTATTAAGTAAGAAACTTTGGAAGTCGTTT
254 TCATGCTCGAAAGACTTACTAATGGCCCAAAGGACTTACTAAGTAAGAAACTTTGGAAATCGTTT
* * *
8224058 TCTTACTTTTCAGAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTTATTTTTTGGAAATC
319 TCTTACTTTCCAAAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTTGGAAATC
*
8224123 ACATGAAAACATCCTGCCCG
384 ACATGAAAACATCCTACCCG
* * * * * *
8224143 AAGGTCTTATGGATGGCCCGAAGGACTT-ATCATCTTCCTCGAAAGACTTAT
1 AAGGTCTTATAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTAT
8224194 AGACGACCTA
Statistics
Matches: 399, Mismatches: 49, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
402 5 0.01
403 47 0.12
405 111 0.28
406 175 0.44
407 61 0.15
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (403 bp):
AAGGTCTTATAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTATTGACTAAGAAGGA
CTTACTAAGTAAGAAACTTTGGAAATCAATTTCTTACTTTTCAAAAAAGATTTAAATAAGAAACT
TTGGAAATCGCTTTCTCATTTTGGAAATCACGTGAAAACATCATGCCCGAAGGTCCTATGGATGA
CCTGAAGGACTTATCATCCTACTCGAAAAGCTTATAGATAACCCGAAAGATTTAAGAATCATGCT
CGAAAGACTTACTAATGGCCCAAAGGACTTACTAAGTAAGAAACTTTGGAAATCGTTTTCTTACT
TTCCAAAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTTGGAAATCACATGAA
AACATCCTACCCG
Found at i:8224490 original size:240 final size:240
Alignment explanation
Indices: 8224064--8224531 Score: 670
Period size: 240 Copynumber: 1.9 Consensus size: 240
8224054 GTTTTCTTAC
* * *
8224064 TTTTCAGAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTTATTTTTTGGAAATCACATGA
1 TTTTCAGAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTCATCTTTTGAAAATCACATGA
* * *
8224129 AAACATCCTGCCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTCCTCGAAAGACTTAT
66 AAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTCATCGAAAGACCTAT
* * *
8224194 AGACGACCTAAATGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTAATAA
131 AGACAACCGAAATGATATAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTAATAA
* ** *
8224259 GTAAGAAACTTTGGAAATCGTTTTCTTACTTTTCAAAAATTTCAA
196 ATAAGAAACTTTGGAAATCACTTTCCTACTTTTCAAAAATTTCAA
**
8224304 TTTTCAGAAAAGATTTAAATGAGAAACTTTGGAAATC-CTGTTCTCATCTTTTGAAAATCATGTG
1 TTTTCAGAAAAGATTTAAATGAGAAACTTTGGAAATCACT-TTCTCATCTTTTGAAAATCACATG
* * * * * * *
8224368 AAATCATCCTGGCCAAATGTCTTATGGATGGCTCGAATGACTTATCATCTTGATCGAAAGGCCTA
65 AAAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTCATCGAAAGACCTA
* * *
8224433 TAGATAACCCGAAA-GATATAAGCATCATGCTCGAAATACTTACTGATGGCTCGAAGGACTTAAT
130 TAGACAA-CCGAAATGATATAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTAAT
*
8224497 AAATAATAAACTTTGGAAATCACTTTCCTACTTTT
194 AAATAAGAAACTTTGGAAATCACTTTCCTACTTTT
8224532 TAACTTATAA
Statistics
Matches: 200, Mismatches: 26, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
239 2 0.01
240 193 0.96
241 5 0.03
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (240 bp):
TTTTCAGAAAAGATTTAAATGAGAAACTTTGGAAATCACTTTCTCATCTTTTGAAAATCACATGA
AAACATCCTGCCCAAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTCATCGAAAGACCTAT
AGACAACCGAAATGATATAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTAATAA
ATAAGAAACTTTGGAAATCACTTTCCTACTTTTCAAAAATTTCAA
Found at i:8227475 original size:108 final size:109
Alignment explanation
Indices: 8227262--8227488 Score: 295
Period size: 109 Copynumber: 2.1 Consensus size: 109
8227252 TACATATGAT
* * * * *
8227262 CAAAATGCAAAAACATGCTTAAATATGGTGGACTAAACAACAAATGTTCCACAAATATATAAACT
1 CAAAATGCAAAAACACGCTCAAATATGGTGGACTAAACAAAAAATATCCCACAAATATATAAACT
8227327 GCATGAAAATGGGGTAAATAACATATTTGATCATCGCAGGTGAC
66 GCATGAAAATGGGGTAAATAACATATTTGATCATCGCAGGTGAC
*
8227371 CAAAATGCAAAAACACGCTCAACTATAGG-GGACTAAACAAAAAATATCCCAACAAATATAT-AA
1 CAAAATGCAAAAACACGCTCAAATAT-GGTGGACTAAACAAAAAATATCCC-ACAAATATATAAA
*
8227434 CATGCAT-AAAA-GGGGTAAATAACA-AGTTT-AGTCCTCGCAGGTGAC
64 C-TGCATGAAAATGGGGTAAATAACATA-TTTGA-TCATCGCAGGTGAC
*
8227479 CAACATGCAA
1 CAAAATGCAA
8227489 CAACGACCTA
Statistics
Matches: 105, Mismatches: 8, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
107 2 0.02
108 38 0.36
109 48 0.46
110 17 0.16
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.21
Consensus pattern (109 bp):
CAAAATGCAAAAACACGCTCAAATATGGTGGACTAAACAAAAAATATCCCACAAATATATAAACT
GCATGAAAATGGGGTAAATAACATATTTGATCATCGCAGGTGAC
Found at i:8227503 original size:108 final size:109
Alignment explanation
Indices: 8227262--8227504 Score: 295
Period size: 108 Copynumber: 2.2 Consensus size: 109
8227252 TACATATGAT
* * * *
8227262 CAAAATGCAAAAACATGCTTAAA-TAT-GGTGGACTAAACAACAAATGTTCCACAAATATATAAA
1 CAAAATGCAAAAACACGC-TAAACTATAGG-GGACTAAACAAAAAATATCCCACAAATATATAAA
8227325 CTGCATGAAAATGGGGTAAATAACATATTTGATCATCGCAGGTGAC
64 CTGCATGAAAATGGGGTAAATAACATATTTGATCATCGCAGGTGAC
*
8227371 CAAAATGCAAAAACACGCTCAACTATAGGGGACTAAACAAAAAATATCCCAACAAATATAT-AAC
1 CAAAATGCAAAAACACGCTAAACTATAGGGGACTAAACAAAAAATATCCC-ACAAATATATAAAC
*
8227435 ATGCAT-AAAA-GGGGTAAATAACA-AGTTT-AGTCCTCGCAGGTGAC
65 -TGCATGAAAATGGGGTAAATAACATA-TTTGA-TCATCGCAGGTGAC
* *
8227479 CAACATGCAACAACGAC-CTAAACTAT
1 CAAAATGCAAAAAC-ACGCTAAACTAT
8227505 GTGGTACCTA
Statistics
Matches: 118, Mismatches: 9, Indels: 15
0.83 0.06 0.11
Matches are distributed among these distances:
107 2 0.02
108 52 0.44
109 47 0.40
110 17 0.14
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.21
Consensus pattern (109 bp):
CAAAATGCAAAAACACGCTAAACTATAGGGGACTAAACAAAAAATATCCCACAAATATATAAACT
GCATGAAAATGGGGTAAATAACATATTTGATCATCGCAGGTGAC
Found at i:8236262 original size:141 final size:141
Alignment explanation
Indices: 8236008--8236290 Score: 557
Period size: 141 Copynumber: 2.0 Consensus size: 141
8235998 TGATGCCCGG
8236008 AGCCTTTAAAGGGGACATGGAGAAGAGGGCTTCTTTGACTTCGATGTTAGTAGGAACGACGGCGA
1 AGCCTTTAAAGGGGACATGGAGAAGAGGGCTTCTTTGACTTCGATGTTAGTAGGAACGACGGCGA
*
8236073 AGTGGTTTAAATCATCCTTAGGAATAGCTAGAAAGAAACATGAAACAGGAAAAGTAGATAGAGGA
66 AGTGGTTTAAATCATCCTTAGGAATAGCTAGAAAGAAACAGGAAACAGGAAAAGTAGATAGAGGA
8236138 GGGTTATCGTA
131 GGGTTATCGTA
8236149 AGCCTTTAAAGGGGACATGGAGAAGAGGGCTTCTTTGACTTCGATGTTAGTAGGAACGACGGCGA
1 AGCCTTTAAAGGGGACATGGAGAAGAGGGCTTCTTTGACTTCGATGTTAGTAGGAACGACGGCGA
8236214 AGTGGTTTAAATCATCCTTAGGAATAGCTAGAAAGAAACAGGAAACAGGAAAAGTAGATAGAGGA
66 AGTGGTTTAAATCATCCTTAGGAATAGCTAGAAAGAAACAGGAAACAGGAAAAGTAGATAGAGGA
8236279 GGGTTATCGTA
131 GGGTTATCGTA
8236290 A
1 A
8236291 TCAAAGAGAT
Statistics
Matches: 141, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
141 141 1.00
ACGTcount: A:0.36, C:0.12, G:0.30, T:0.22
Consensus pattern (141 bp):
AGCCTTTAAAGGGGACATGGAGAAGAGGGCTTCTTTGACTTCGATGTTAGTAGGAACGACGGCGA
AGTGGTTTAAATCATCCTTAGGAATAGCTAGAAAGAAACAGGAAACAGGAAAAGTAGATAGAGGA
GGGTTATCGTA
Found at i:8238908 original size:22 final size:20
Alignment explanation
Indices: 8238883--8238923 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
8238873 GCAACAAGTT
8238883 ACACAAATATTTATATTTCATG
1 ACACAAATA--TATATTTCATG
*
8238905 ACACCAATATATATTTCAT
1 ACACAAATATATATTTCAT
8238924 ACATGGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
22 8 0.44
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.39
Consensus pattern (20 bp):
ACACAAATATATATTTCATG
Found at i:8239402 original size:19 final size:18
Alignment explanation
Indices: 8239370--8239419 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
8239360 TTAGTATTAC
8239370 TATTATTATTTTTTAACTA
1 TATTATT-TTTTTTAACTA
* * *
8239389 TATTATTTTATTTTTATTT
1 TATTATTTT-TTTTAACTA
8239408 TATTATTTTTTT
1 TATTATTTTTTT
8239420 AAGCCAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 5 0.19
19 22 0.81
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (18 bp):
TATTATTTTTTTTAACTA
Found at i:8239407 original size:11 final size:12
Alignment explanation
Indices: 8239372--8239420 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
8239362 AGTATTACTA
8239372 TTATTATTT-TT
1 TTATTATTTATT
* *
8239383 TAACTATATTATT
1 TTATTAT-TTATT
8239396 TTATT-TTTATT
1 TTATTATTTATT
8239407 TTATTATTT-TT
1 TTATTATTTATT
8239418 TTA
1 TTA
8239421 AGCCAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
11 20 0.65
12 6 0.19
13 5 0.16
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (12 bp):
TTATTATTTATT
Found at i:8240556 original size:2 final size:2
Alignment explanation
Indices: 8240549--8240575 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8240539 CACATGAAGC
8240549 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8240576 CAAGCATAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8240684 original size:78 final size:79
Alignment explanation
Indices: 8240561--8240708 Score: 262
Period size: 78 Copynumber: 1.9 Consensus size: 79
8240551 ATATATATAT
* *
8240561 ATATATATATATATACAAGCATAGTGTCATGCATACCTATTTAGGTATTTTAGTTAAAAATGTCC
1 ATATATATATATATAAAAGCA-AGTGTCATGCATACCTATGTAGGTATTTTAGTTAAAAATGTCC
8240626 TATACATATACACAC
65 TATACATATACACAC
8240641 ATATATATATATATAAAAGC-AGTGTCATGCATACCTATGTAGGTATTTTAGTTAAAAATGTCCT
1 ATATATATATATATAAAAGCAAGTGTCATGCATACCTATGTAGGTATTTTAGTTAAAAATGTCCT
8240705 ATAC
66 ATAC
8240709 GTGTAATATT
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
78 47 0.71
80 19 0.29
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (79 bp):
ATATATATATATATAAAAGCAAGTGTCATGCATACCTATGTAGGTATTTTAGTTAAAAATGTCCT
ATACATATACACAC
Found at i:8240793 original size:8 final size:8
Alignment explanation
Indices: 8240780--8240819 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
8240770 ATTGCACCTT
8240780 TTTTATTA
1 TTTTATTA
8240788 TTTTATTA
1 TTTTATTA
8240796 TTTTATTA
1 TTTTATTA
*
8240804 TTATTGTTA
1 TT-TTATTA
*
8240813 TTATATT
1 TTTTATT
8240820 TATACTAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (8 bp):
TTTTATTA
Found at i:8243743 original size:3 final size:3
Alignment explanation
Indices: 8243721--8243808 Score: 83
Period size: 3 Copynumber: 29.3 Consensus size: 3
8243711 GTAAGGGTCT
8243721 ATA ATA A-A ATAA ATA A-A ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
8243764 GATAA ATG ATA ATA ATG ATA ATA ATA ATA ACA ACA ACA ATA ATA A
1 -AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
8243809 AAGGTTTGGG
Statistics
Matches: 73, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
2 6 0.08
3 59 0.81
4 7 0.10
5 1 0.01
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:8244043 original size:3 final size:3
Alignment explanation
Indices: 8244021--8244108 Score: 83
Period size: 3 Copynumber: 29.3 Consensus size: 3
8244011 GTAAGGGTCT
8244021 ATA ATA A-A ATAA ATA A-A ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
8244064 GATAA ATG ATA ATA ATG ATA ATA ATA ATA ACA ACA ACA ATA ATA A
1 -AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
8244109 AAGGTTTGGG
Statistics
Matches: 73, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
2 6 0.08
3 59 0.81
4 7 0.10
5 1 0.01
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:8244240 original size:300 final size:301
Alignment explanation
Indices: 8243698--8244304 Score: 1207
Period size: 300 Copynumber: 2.0 Consensus size: 301
8243688 TATAATTGGG
8243698 TCAATTTGGGTTTGTAAGGGTCTATAATAAAATAAATAAAATAATAATAATAATAATAATAAAAT
1 TCAATTTGGGTTTGTAAGGGTCTATAATAAAATAAATAAAATAATAATAATAATAATAATAAAAT
8243763 AGATAAATGATAATAATGATAATAATAATAACAACAACAATAATAAAAGGTTTGGGCAAAAACGA
66 AGATAAATGATAATAATGATAATAATAATAACAACAACAATAATAAAAGGTTTGGGCAAAAACGA
8243828 GTGTCTACAACTGCCCCTCTTTGCTCATTCTTGTGTGAACAAGGATAGAACAAAGAGAAATATAC
131 GTGTCTACAACTGCCCCTCTTTGCTCATTCTTGTGTGAACAAGGATAGAACAAAGAGAAATATAC
8243893 TTAAATTTTTGTTCGGTCGCAACAAGCTTTAAATGAATACGATAGTGTTAGTCTATTTAA-TGAG
196 TTAAATTTTTGTTCGGTCGCAACAAGCTTTAAATGAATACGATAGTGTTAGTCTATTTAATTGAG
8243957 GTTAAATCGAGGTTGATTTTCTTCACTGCTCTTAAGGAAGA
261 GTTAAATCGAGGTTGATTTTCTTCACTGCTCTTAAGGAAGA
8243998 TCAATTTGGGTTTGTAAGGGTCTATAATAAAATAAATAAAATAATAATAATAATAATAATAAAAT
1 TCAATTTGGGTTTGTAAGGGTCTATAATAAAATAAATAAAATAATAATAATAATAATAATAAAAT
8244063 AGATAAATGATAATAATGATAATAATAATAACAACAACAATAATAAAAGGTTTGGGCAAAAACGA
66 AGATAAATGATAATAATGATAATAATAATAACAACAACAATAATAAAAGGTTTGGGCAAAAACGA
8244128 GTGTCTACAACTGCCCCTCTTTGCTCATTCTTGTGTGAACAAGGATAGAACAAAGAGAAATATAC
131 GTGTCTACAACTGCCCCTCTTTGCTCATTCTTGTGTGAACAAGGATAGAACAAAGAGAAATATAC
8244193 TTAAATTTTTGTTCGGTCGCAACAAGCTTTAAATGAATACGATAGTGTTAGTCTATTTAATTGAG
196 TTAAATTTTTGTTCGGTCGCAACAAGCTTTAAATGAATACGATAGTGTTAGTCTATTTAATTGAG
8244258 GTTAAATCGAGGTTGATTTTCTTCACTGCTCTTAAGGAAGA
261 GTTAAATCGAGGTTGATTTTCTTCACTGCTCTTAAGGAAGA
8244299 TCAATT
1 TCAATT
8244305 CTACTAAAAG
Statistics
Matches: 306, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
300 255 0.83
301 51 0.17
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (301 bp):
TCAATTTGGGTTTGTAAGGGTCTATAATAAAATAAATAAAATAATAATAATAATAATAATAAAAT
AGATAAATGATAATAATGATAATAATAATAACAACAACAATAATAAAAGGTTTGGGCAAAAACGA
GTGTCTACAACTGCCCCTCTTTGCTCATTCTTGTGTGAACAAGGATAGAACAAAGAGAAATATAC
TTAAATTTTTGTTCGGTCGCAACAAGCTTTAAATGAATACGATAGTGTTAGTCTATTTAATTGAG
GTTAAATCGAGGTTGATTTTCTTCACTGCTCTTAAGGAAGA
Found at i:8244537 original size:131 final size:132
Alignment explanation
Indices: 8244360--8244746 Score: 350
Period size: 132 Copynumber: 2.9 Consensus size: 132
8244350 CTGGAAATGC
* * * * ** * * *
8244360 TGATTAACTTCACTATTCTATAAGGAAGCTTGAATCAAGGTAGATTTGCTCCACT-TCTCTTCAA
1 TGATTCACTTCACTACTCTTTAAGGAAGATTGAATCGTGGTTGATTTACTCCAATGT-TCTTCAA
* * ** ** * * *
8244424 GAAAGATCAAATCTG-GAAAAAGAGATTTGCTCTTCTATGTTCCAGGGTAGATCAGGTTTAGAGA
65 GAAAGATCAAATCTGAAAAAAAGAGATATGCTCCGCTACATTCCAGGGTAGATCAGATCTAAAGA
8244488 CTT
130 CTT
* ** *
8244491 TGATTCACTTCACTACTCTTTAGGGAAGATTGAATCGTGGTTGATTTACTTTAATGTTCTTCAGG
1 TGATTCACTTCACTACTCTTTAAGGAAGATTGAATCGTGGTTGATTTACTCCAATGTTCTTCAAG
* * * * * *
8244556 GAATATCAAATTTGAAAAAAAGGGATATGCTCCGCTGCATTCTAGGGTAGATCAGATCTAAAGAC
66 AAAGATCAAATCTGAAAAAAAGAGATATGCTCCGCTACATTCCAGGGTAGATCAGATCTAAAGAC
8244621 TT
131 TT
* * * * * *
8244623 TGATTCATTTCACTGCTCTTTATGGAAGATTGAATCGTGGTTGATTTTC-CTCATTGTTCTTCAT
1 TGATTCACTTCACTACTCTTTAAGGAAGATTGAATCGTGGTTGATTTACTC-CAATGTTCTTCAA
* * * * * * *
8244687 GGAAGATCAAATTTGAGAAAAAA-TGATATGCTCAGCTACGTTTCAAGGTAGATCAGATCT
65 GAAAGATCAAATCTGA-AAAAAAGAGATATGCTCCGCTACATTCCAGGGTAGATCAGATCT
8244747 GGAAAGTTTG
Statistics
Matches: 208, Mismatches: 44, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
131 61 0.29
132 141 0.68
133 6 0.03
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.35
Consensus pattern (132 bp):
TGATTCACTTCACTACTCTTTAAGGAAGATTGAATCGTGGTTGATTTACTCCAATGTTCTTCAAG
AAAGATCAAATCTGAAAAAAAGAGATATGCTCCGCTACATTCCAGGGTAGATCAGATCTAAAGAC
TT
Found at i:8244636 original size:132 final size:132
Alignment explanation
Indices: 8244466--8244746 Score: 377
Period size: 132 Copynumber: 2.1 Consensus size: 132
8244456 TTCTATGTTC
* * *
8244466 CAGGGTAGATCAGGTTTAGAGACTTTGATTCACTTCACTACTCTTTAGGGAAGATTGAATCGTGG
1 CAGGGTAGATCAGATCTAAAGACTTTGATTCACTTCACTACTCTTTAGGGAAGATTGAATCGTGG
* * * * *
8244531 TTGATTTACTTTAATGTTCTTCAGGGAATATCAAATTTGA-AAAAAAGGGATATGCTCCGCTGCA
66 TTGATTTACCTCAATGTTCTTCAGGGAAGATCAAATTTGAGAAAAAA-GGATATGCTCAGCTACA
8244595 -TT
130 TTT
* * *
8244597 CTAGGGTAGATCAGATCTAAAGACTTTGATTCATTTCACTGCTCTTTATGGAAGATTGAATCGTG
1 C-AGGGTAGATCAGATCTAAAGACTTTGATTCACTTCACTACTCTTTAGGGAAGATTGAATCGTG
* * * * *
8244662 GTTGATTTTCCTCATTGTTCTTCATGGAAGATCAAATTTGAGAAAAAATGATATGCTCAGCTACG
65 GTTGATTTACCTCAATGTTCTTCAGGGAAGATCAAATTTGAGAAAAAAGGATATGCTCAGCTACA
8244727 TTT
130 TTT
*
8244730 CAAGGTAGATCAGATCT
1 CAGGGTAGATCAGATCT
8244747 GGAAAGTTTG
Statistics
Matches: 130, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
131 1 0.01
132 120 0.92
133 9 0.07
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (132 bp):
CAGGGTAGATCAGATCTAAAGACTTTGATTCACTTCACTACTCTTTAGGGAAGATTGAATCGTGG
TTGATTTACCTCAATGTTCTTCAGGGAAGATCAAATTTGAGAAAAAAGGATATGCTCAGCTACAT
TT
Found at i:8257545 original size:21 final size:20
Alignment explanation
Indices: 8257521--8257572 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
8257511 AATGGATTCT
*
8257521 CTCTTTTTTTCTCTCTTAAAA
1 CTCTTTTTTTCTC-CCTAAAA
*
8257542 CTCTCTTTTTTCTCCCTCAAA
1 CTCT-TTTTTTCTCCCTAAAA
*
8257563 CTATTTTTTT
1 CTCTTTTTTT
8257573 ATCTGGTTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.22
21 12 0.44
22 9 0.33
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (20 bp):
CTCTTTTTTTCTCCCTAAAA
Found at i:8257990 original size:3 final size:3
Alignment explanation
Indices: 8257948--8258015 Score: 88
Period size: 3 Copynumber: 23.3 Consensus size: 3
8257938 GTAAGGGCCT
* *
8257948 ATA ATA A-A ATA A-A ATA AAA ATA AAA ATA A-A ATA GATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
8257991 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
8258016 AAGATCCGGA
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
2 6 0.11
3 48 0.84
4 3 0.05
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.26
Consensus pattern (3 bp):
ATA
Found at i:8258357 original size:22 final size:22
Alignment explanation
Indices: 8258331--8258436 Score: 94
Period size: 21 Copynumber: 4.9 Consensus size: 22
8258321 GAATTATTCG
8258331 CAGTGCTAAGGCACTTTAGT-A
1 CAGTGCTAAGGCACTTTAGTCA
* * * **
8258352 TTAGTGCGAATGCACTTCCGT-A
1 -CAGTGCTAAGGCACTTTAGTCA
* *
8258374 TCAGTGTTGAGGCAC-TTAGTCA
1 -CAGTGCTAAGGCACTTTAGTCA
*
8258396 CAGTACTAAGGCAC-TTAGTCA
1 CAGTGCTAAGGCACTTTAGTCA
8258417 CAGTGCTAAGGCACTTTAGT
1 CAGTGCTAAGGCACTTTAGT
8258437 TATCCGATGG
Statistics
Matches: 66, Mismatches: 16, Indels: 4
0.77 0.19 0.05
Matches are distributed among these distances:
21 34 0.52
22 32 0.48
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (22 bp):
CAGTGCTAAGGCACTTTAGTCA
Found at i:8268806 original size:19 final size:19
Alignment explanation
Indices: 8268790--8268826 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8268780 AGCCTCGCTG
*
8268790 GGCTCCTAACCCCTCGCCA
1 GGCTCCCAACCCCTCGCCA
8268809 GGCTCCCAACCCCTCGCC
1 GGCTCCCAACCCCTCGCC
8268827 GTCTGGCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.14, C:0.57, G:0.16, T:0.14
Consensus pattern (19 bp):
GGCTCCCAACCCCTCGCCA
Found at i:8269367 original size:23 final size:23
Alignment explanation
Indices: 8269336--8269401 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 23
8269326 ACTCAGTCGC
*
8269336 AGTCAACTCGTTGATTTTGACCAG
1 AGTCAACTCGTTGACTTTGA-CAG
*
8269360 -GTCAACTCGTTGACTTTGACTG
1 AGTCAACTCGTTGACTTTGACAG
*
8269382 AGTCAACCCGTTGACTTTGA
1 AGTCAACTCGTTGACTTTGA
8269402 TCGGTCAGAC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
22 2 0.05
23 36 0.95
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (23 bp):
AGTCAACTCGTTGACTTTGACAG
Found at i:8269425 original size:46 final size:46
Alignment explanation
Indices: 8269336--8269426 Score: 105
Period size: 46 Copynumber: 2.0 Consensus size: 46
8269326 ACTCAGTCGC
* * * *
8269336 AGTCAACTCGTTGATTTTGACCAGGTCAACTCGTTGACTTTGACTG
1 AGTCAACCCGTTGACTTTGACCAGGTCAACTCGTTAACGTTGACTG
*
8269382 AGTCAACCCGTTGACTTTGATC-GGTCAGAC-CGTTAACCGTTGACT
1 AGTCAACCCGTTGACTTTGACCAGGTCA-ACTCGTTAA-CGTTGACT
8269427 TTGACAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
45 10 0.26
46 28 0.74
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (46 bp):
AGTCAACCCGTTGACTTTGACCAGGTCAACTCGTTAACGTTGACTG
Found at i:8271336 original size:66 final size:66
Alignment explanation
Indices: 8271230--8271359 Score: 197
Period size: 66 Copynumber: 2.0 Consensus size: 66
8271220 GGTATGAAGA
* **
8271230 CTCTGGTAGGTTCAGTCGTTGCTGGTAATTCCTTGTATAGGTTCAACACCGATTGGTAATTCCTA
1 CTCTGGTAGGTTCAATCGTTGCTGGTAATTCCTTGTATAGGTTCAACACCGACAGGTAATTCCTA
8271295 T
66 T
* * * *
8271296 CTCTGGTAGTTTCAATCGTTGTTGGTAATTCCTTGTATAGGTTCAGCACCTACAGGTAATTCCT
1 CTCTGGTAGGTTCAATCGTTGCTGGTAATTCCTTGTATAGGTTCAACACCGACAGGTAATTCCT
8271360 TATTGACCTA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (66 bp):
CTCTGGTAGGTTCAATCGTTGCTGGTAATTCCTTGTATAGGTTCAACACCGACAGGTAATTCCTA
T
Found at i:8272315 original size:31 final size:31
Alignment explanation
Indices: 8272272--8272345 Score: 130
Period size: 31 Copynumber: 2.4 Consensus size: 31
8272262 CAAGCTCAGT
8272272 TCGAACTCGAAATATAATATTGAAAATCGAC
1 TCGAACTCGAAATATAATATTGAAAATCGAC
* *
8272303 TCGAACTTGAAATATAATATTGAAACTCGAC
1 TCGAACTCGAAATATAATATTGAAAATCGAC
8272334 TCGAACTCGAAA
1 TCGAACTCGAAA
8272346 AGGCTCGAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.26
Consensus pattern (31 bp):
TCGAACTCGAAATATAATATTGAAAATCGAC
Found at i:8272411 original size:11 final size:11
Alignment explanation
Indices: 8272395--8272458 Score: 60
Period size: 11 Copynumber: 5.6 Consensus size: 11
8272385 TCGAGACTCG
8272395 AGCTCGATTGA
1 AGCTCGATTGA
8272406 AGCTCGATTTTG-
1 AGCTCGA--TTGA
*
8272418 AGCTCGATTCA
1 AGCTCGATTGA
8272429 AGCTCGATTTTG-
1 AGCTCGA--TTGA
*
8272441 AGCTCGATTCA
1 AGCTCGATTGA
8272452 AGCTCGA
1 AGCTCGA
8272459 ACTCAAACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
10 4 0.09
11 21 0.48
12 14 0.32
13 5 0.11
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (11 bp):
AGCTCGATTGA
Found at i:8272423 original size:12 final size:12
Alignment explanation
Indices: 8272394--8272449 Score: 64
Period size: 12 Copynumber: 4.8 Consensus size: 12
8272384 CTCGAGACTC
8272394 GAGCTCGA--TT
1 GAGCTCGATTTT
8272404 GAAGCTCGATTTT
1 G-AGCTCGATTTT
*
8272417 GAGCTCGA-TTC
1 GAGCTCGATTTT
*
8272428 AAGCTCGATTTT
1 GAGCTCGATTTT
8272440 GAGCTCGATT
1 GAGCTCGATT
8272450 CAAGCTCGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
10 1 0.03
11 16 0.42
12 18 0.47
13 3 0.08
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (12 bp):
GAGCTCGATTTT
Found at i:8272424 original size:23 final size:23
Alignment explanation
Indices: 8272394--8272458 Score: 121
Period size: 23 Copynumber: 2.8 Consensus size: 23
8272384 CTCGAGACTC
*
8272394 GAGCTCGATTGAAGCTCGATTTT
1 GAGCTCGATTCAAGCTCGATTTT
8272417 GAGCTCGATTCAAGCTCGATTTT
1 GAGCTCGATTCAAGCTCGATTTT
8272440 GAGCTCGATTCAAGCTCGA
1 GAGCTCGATTCAAGCTCGA
8272459 ACTCAAACTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (23 bp):
GAGCTCGATTCAAGCTCGATTTT
Found at i:8272553 original size:14 final size:14
Alignment explanation
Indices: 8272534--8272563 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8272524 TATAATTATC
*
8272534 AATAATGTATTTTT
1 AATAATGTAATTTT
8272548 AATAATGTAATTTT
1 AATAATGTAATTTT
8272562 AA
1 AA
8272564 AAAAACTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
AATAATGTAATTTT
Found at i:8272834 original size:14 final size:14
Alignment explanation
Indices: 8272815--8272844 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8272805 TATAATTATC
*
8272815 AATAATGTATTTTT
1 AATAATGTAATTTT
8272829 AATAATGTAATTTT
1 AATAATGTAATTTT
8272843 AA
1 AA
8272845 AAAAACTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
AATAATGTAATTTT
Found at i:8272995 original size:283 final size:282
Alignment explanation
Indices: 8272490--8273055 Score: 1107
Period size: 283 Copynumber: 2.0 Consensus size: 282
8272480 TACAAAAATC
8272490 TTATATTACATTTAAAAATATATTTTTGAAAATTTATAATTATCAATAATGTATTTTTAATAATG
1 TTATATTACATTTAAAAATATATTTTTGAAAATTTATAATTATCAATAATGTATTTTTAATAATG
8272555 TAATTTTAAAAAAACTAAAATTATAATAACATTTTTTTCTAGTAGCTCGCAAGCTTTTCGAGTTA
66 TAATTTTAAAAAAACTAAAATTATAATAACATTTTTTTCTAGTAGCTCGCAAGCTTTTCGAGTTA
8272620 AGTATTAAGTAACTCGTTTTAGCTCGTTAAGAATTCGAGTCAAGTTTGAGCTCGAGTTGAGTTCA
131 AGTATTAAGTAACTCGTTTTAGCTCGTTAAGAATTCGAGTCAAGTTTGAGCTCGAGTTGAGTTCA
8272685 TTCGATTTGAGTGTTGATCGGGCTTTGACCGAGTCGATCTCAAGTAGCTCGCGATCTGTCACGTC
196 TTCGATTTGAGTGTTGATCGGGCTTTGACCGAGTCGATCTCAAGTAGCTCGCGATCTGTCACGTC
8272750 TCATTTACAG-CCTAGTTCTGA
261 TCATTTACAGCCCTAGTTCTGA
8272771 TTATATTACATTTAAAAATATATTTTTGAAAATTTATAATTATCAATAATGTATTTTTAATAATG
1 TTATATTACATTTAAAAATATATTTTTGAAAATTTATAATTATCAATAATGTATTTTTAATAATG
8272836 TAATTTTAAAAAAACTAAAATTATAATATAACATTTTTTTCTAGTAGCTCGCAAGCTTTTCGAGT
66 TAATTTTAAAAAAACTAAAATTAT-A-ATAACATTTTTTTCTAGTAGCTCGCAAGCTTTTCGAGT
8272901 TAAGTATTAAGTAACTCGTTTTAGCTCGTTAAGAATTCGAGTCAAGTTTGAGCTCGAGTTGAGTT
129 TAAGTATTAAGTAACTCGTTTTAGCTCGTTAAGAATTCGAGTCAAGTTTGAGCTCGAGTTGAGTT
8272966 CATTCGATTTGAGTGTTGATCGGGCTTTGACCGAGTCGATCTCAAGTAGCTCGCGATCTGTCACG
194 CATTCGATTTGAGTGTTGATCGGGCTTTGACCGAGTCGATCTCAAGTAGCTCGCGATCTGTCACG
8273031 TCTCATTTACAGCCCTAGTTCTGA
259 TCTCATTTACAGCCCTAGTTCTGA
8273055 T
1 T
8273056 ATTGCCAACT
Statistics
Matches: 282, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
281 89 0.32
282 1 0.00
283 180 0.64
284 12 0.04
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (282 bp):
TTATATTACATTTAAAAATATATTTTTGAAAATTTATAATTATCAATAATGTATTTTTAATAATG
TAATTTTAAAAAAACTAAAATTATAATAACATTTTTTTCTAGTAGCTCGCAAGCTTTTCGAGTTA
AGTATTAAGTAACTCGTTTTAGCTCGTTAAGAATTCGAGTCAAGTTTGAGCTCGAGTTGAGTTCA
TTCGATTTGAGTGTTGATCGGGCTTTGACCGAGTCGATCTCAAGTAGCTCGCGATCTGTCACGTC
TCATTTACAGCCCTAGTTCTGA
Found at i:8275810 original size:24 final size:24
Alignment explanation
Indices: 8275779--8275834 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
8275769 TAGAAGTTCG
8275779 ATTGAAGCCTAAAATTTAAGCTCA
1 ATTGAAGCCTAAAATTTAAGCTCA
* *
8275803 ATTGAAGCCTAAAATTTGAGTTCA
1 ATTGAAGCCTAAAATTTAAGCTCA
8275827 ATTGAAGC
1 ATTGAAGC
8275835 GAAAGAATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (24 bp):
ATTGAAGCCTAAAATTTAAGCTCA
Found at i:8276291 original size:8 final size:8
Alignment explanation
Indices: 8276278--8276302 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8276268 TGAATCTGGT
8276278 TGAACCAG
1 TGAACCAG
8276286 TGAACCAG
1 TGAACCAG
8276294 TGAACCAG
1 TGAACCAG
8276302 T
1 T
8276303 ATCTTCACCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (8 bp):
TGAACCAG
Found at i:8290323 original size:13 final size:12
Alignment explanation
Indices: 8290305--8290347 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
8290295 AAATTTTGGC
*
8290305 TTTTTTGTTTTG
1 TTTTTTTTTTTG
8290317 TTTTTTTTTTTG
1 TTTTTTTTTTTG
** *
8290329 CCTTTTTTTTTA
1 TTTTTTTTTTTG
8290341 TTTTTTT
1 TTTTTTT
8290348 ATTGAAAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.02, C:0.05, G:0.07, T:0.86
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:8290334 original size:14 final size:13
Alignment explanation
Indices: 8290298--8290339 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
8290288 TTTTTTGAAA
*
8290298 TTTTGGCTTTTTT
1 TTTTTGCTTTTTT
*
8290311 GTTTTG-TTTTTT
1 TTTTTGCTTTTTT
8290323 TTTTTGCCTTTTTT
1 TTTTTG-CTTTTTT
8290337 TTT
1 TTT
8290340 ATTTTTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
12 11 0.46
13 4 0.17
14 9 0.38
ACGTcount: A:0.00, C:0.07, G:0.12, T:0.81
Consensus pattern (13 bp):
TTTTTGCTTTTTT
Found at i:8291062 original size:247 final size:247
Alignment explanation
Indices: 8290626--8291120 Score: 958
Period size: 247 Copynumber: 2.0 Consensus size: 247
8290616 GGAATGAATG
8290626 AGGAAGGTGGCGGCAATAGCTAGGGTCTTTAGGGTTTCTTTTAGTGCTGGAAACAGAAAGAAACA
1 AGGAAGGTGGCGGCAATAGCTAGGGTCTTTAGGGTTTCTTTTAGTGCTGGAAACAGAAAGAAACA
8290691 AGATTAAAATAAGATAAACAAAAGATAAAGGAATTAAAAATAGAGAAAATAACCAAGAAATCAAA
66 AGATTAAAATAAGATAAACAAAAGATAAAGGAATTAAAAATAGAGAAAATAACCAAGAAATCAAA
8290756 GATCTCCTTTATGAAAGTGAACGGTAAAGATGATTGATGGCGTGGATGGATGTGGAAAATCGATG
131 GATCTCCTTTATGAAAGTGAACGGTAAAGATGATTGATGGCGTGGATGGATGTGGAAAATCGATG
8290821 GATAATGTCCTATCGAGCCTCCTAGTCGCAATGAAAAGGCAAACACGATAAT
196 GATAATGTCCTATCGAGCCTCCTAGTCGCAATGAAAAGGCAAACACGATAAT
8290873 AGGAAGGTGGCGGCAATAGCTAGGGTCTTTAGGGTTTCTTTTAGTGCTGGAAACAAGAAA-AGAA
1 AGGAAGGTGGCGGCAATAGCTAGGGTCTTTAGGGTTTCTTTTAGTGCTGGAAAC-AGAAAGA-AA
8290937 CAAGATTAAAATAAGATAAACAAAAGAT-AAGGAATTAAAAATAGAGAAAATAACCAAGAAATCA
64 CAAGATTAAAATAAGATAAACAAAAGATAAAGGAATTAAAAATAGAGAAAATAACCAAGAAATCA
8291001 AAGATCTCCTTTATGAAAGTGAACGGTAAAGATGATTGATGGCGTGGATGGATGTGGAAAATCGA
129 AAGATCTCCTTTATGAAAGTGAACGGTAAAGATGATTGATGGCGTGGATGGATGTGGAAAATCGA
8291066 TGGATAATGTCCTATCGAGCCTCCTAGTCGCAATGAAAAGGCAAACACGATAAT
194 TGGATAATGTCCTATCGAGCCTCCTAGTCGCAATGAAAAGGCAAACACGATAAT
8291120 A
1 A
8291121 TGGCTCTAAC
Statistics
Matches: 246, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
247 211 0.86
248 35 0.14
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.22
Consensus pattern (247 bp):
AGGAAGGTGGCGGCAATAGCTAGGGTCTTTAGGGTTTCTTTTAGTGCTGGAAACAGAAAGAAACA
AGATTAAAATAAGATAAACAAAAGATAAAGGAATTAAAAATAGAGAAAATAACCAAGAAATCAAA
GATCTCCTTTATGAAAGTGAACGGTAAAGATGATTGATGGCGTGGATGGATGTGGAAAATCGATG
GATAATGTCCTATCGAGCCTCCTAGTCGCAATGAAAAGGCAAACACGATAAT
Found at i:8291316 original size:20 final size:21
Alignment explanation
Indices: 8291272--8291318 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
8291262 CAACCTTAAT
8291272 TCCTAAAAAATAATAAATCTGA
1 TCCTAAAAAATAATAAATC-GA
* *
8291294 TCCTAAAAGATAATTAATC-A
1 TCCTAAAAAATAATAAATCGA
8291314 TCCTA
1 TCCTA
8291319 TATTAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 6 0.26
22 17 0.74
ACGTcount: A:0.49, C:0.17, G:0.04, T:0.30
Consensus pattern (21 bp):
TCCTAAAAAATAATAAATCGA
Found at i:8296046 original size:37 final size:37
Alignment explanation
Indices: 8295986--8296090 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
8295976 CCTTTTCGTC
*
8295986 CTACTAGGATTCAAATTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * * *
8296023 TTGCTAGGATTCAAACTCTTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
8296060 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
8296091 CCACAAGCAC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.31
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:8296616 original size:19 final size:19
Alignment explanation
Indices: 8296537--8296642 Score: 63
Period size: 18 Copynumber: 5.3 Consensus size: 19
8296527 TTTTTTACAC
*
8296537 TATATA-TTATTATATATA
1 TATATATTTATTATTTATA
* * *
8296555 CATATATTTTTTTATTTATT
1 TATATA-TTTATTATTTATA
* *
8296575 TATATTCATTTGGTTATTTTTTAA
1 TATA-T-ATTT-ATTA-TTTAT-A
8296599 TACTATATTTATTATTTATA
1 TA-TATATTTATTATTTATA
* *
8296619 TATATATATA-TATATATA
1 TATATATTTATTATTTATA
8296637 TATATA
1 TATATA
8296643 CTTTTTTTTA
Statistics
Matches: 68, Mismatches: 12, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
18 18 0.26
19 7 0.10
20 15 0.22
21 8 0.12
22 7 0.10
23 8 0.12
24 3 0.04
25 2 0.03
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (19 bp):
TATATATTTATTATTTATA
Found at i:8296622 original size:2 final size:2
Alignment explanation
Indices: 8296602--8296642 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
8296592 TTTTTAATAC
* *
8296602 TA TA TT TA T- TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8296643 CTTTTTTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:8296818 original size:21 final size:22
Alignment explanation
Indices: 8296794--8296835 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
8296784 TCATTATATG
8296794 TATACTT-TTATATTTG-GTTTA
1 TATACTTATTAT-TTTGTGTTTA
*
8296815 TATATTTATTATTTTGTGTTT
1 TATACTTATTATTTTGTGTTT
8296836 GGTTTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.21, C:0.02, G:0.10, T:0.67
Consensus pattern (22 bp):
TATACTTATTATTTTGTGTTTA
Found at i:8296829 original size:27 final size:29
Alignment explanation
Indices: 8296799--8296864 Score: 73
Period size: 27 Copynumber: 2.3 Consensus size: 29
8296789 ATATGTATAC
8296799 TTTTATATTTGGTTTATATA-TT-TATTA
1 TTTTATATTTGGTTTATATATTTATATTA
* * * *
8296826 TTTTGTGTTTGGTTTTTTTATTTATATTA
1 TTTTATATTTGGTTTATATATTTATATTA
*
8296855 TATTATATTT
1 TTTTATATTT
8296865 TCATATTACT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 16 0.53
28 2 0.07
29 12 0.40
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.70
Consensus pattern (29 bp):
TTTTATATTTGGTTTATATATTTATATTA
Found at i:8296955 original size:4 final size:4
Alignment explanation
Indices: 8296940--8296969 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
8296930 TACATTTTAA
8296940 TATT TCATT TATT TATT TATT TATT TATT T
1 TATT T-ATT TATT TATT TATT TATT TATT T
8296970 TTCCTTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:8301470 original size:9 final size:9
Alignment explanation
Indices: 8301456--8301545 Score: 85
Period size: 9 Copynumber: 9.9 Consensus size: 9
8301446 AGATCCAATC
8301456 AAGAAAAAA
1 AAGAAAAAA
*
8301465 AAG-AAAAG
1 AAGAAAAAA
* *
8301473 AAGCAAAAG
1 AAGAAAAAA
8301482 AAGAAAAAA
1 AAGAAAAAA
8301491 AAGAAAAAA
1 AAGAAAAAA
* *
8301500 GAGAAACAA
1 AAGAAAAAA
8301509 AAGAAAAAA
1 AAGAAAAAA
8301518 AAGAAAGAACA
1 AAGAAA-AA-A
*
8301529 AA-AATCAAA
1 AAGAA-AAAA
8301538 AAGAAAAA
1 AAGAAAAA
8301546 GGGACAAAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
8 7 0.10
9 49 0.73
10 8 0.12
11 3 0.04
ACGTcount: A:0.80, C:0.04, G:0.14, T:0.01
Consensus pattern (9 bp):
AAGAAAAAA
Found at i:8301486 original size:26 final size:26
Alignment explanation
Indices: 8301456--8301532 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
8301446 AGATCCAATC
*
8301456 AAGAAAAAAAAGAAAAGAAGCAAAAG
1 AAGAAAAAAAAGAAAAGAAGCAAAAA
*
8301482 AAGAAAAAAAAGAAAA-AAGAGAAACAA
1 AAGAAAAAAAAGAAAAGAAG-CAAA-AA
8301509 AAGAAAAAAAAG-AAAGAA-CAAAAA
1 AAGAAAAAAAAGAAAAGAAGCAAAAA
8301533 TCAAAAAGAA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
24 2 0.04
25 6 0.13
26 22 0.49
27 15 0.33
ACGTcount: A:0.81, C:0.04, G:0.16, T:0.00
Consensus pattern (26 bp):
AAGAAAAAAAAGAAAAGAAGCAAAAA
Found at i:8303187 original size:106 final size:106
Alignment explanation
Indices: 8302980--8304459 Score: 2113
Period size: 106 Copynumber: 14.0 Consensus size: 106
8302970 ATATCGTGCC
* * * * *
8302980 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGA-CGACTGGTTGTCAAC-AATAATTTTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG-CTGGTTGTCAACAAACAATTTCC
* * * *
8303043 TAATTTCGGAGCCAATTTTAACTTCACAACGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* ** *
8303085 ACTCCAGACAACGCAAGTTCAACTTCACGACGAATGGACCATTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
*
8303150 AATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
8303191 ACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTCAAAAAACAACTTT-C
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAA-TTTCC
*
8303255 TAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
8303297 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
* * *
8303362 AATTTCAGAGCCAATTTTAGCTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
8303403 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
8303468 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * **
8303509 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
* *
8303574 AATTTCAGAGCCAATTTCAACTTCACAACGAA-GATTTTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
8303614 ACTCTAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
**
8303679 AATTTCAGAGCCAATTTCAACTTCACAATGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
8303720 ACTCCAGACAACGCAAGTTCAACTTCATGATGAAGGGACCGCTGGTTGTCAACAAATAATTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
*
8303785 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * *
8303826 ACTCAAGACAACGCAAGTTCAACTTCACGATGAAGGGACTGCTGGTTGTCAATAAATAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
8303891 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
8303932 ACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCACTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
* * *
8303997 AATTTTAGAGCCAATTTCAACTTCACAACAAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
8304038 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
* *
8304103 AATTTCAGAGCCAATTTTAACTTCACAGCGTAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
8304144 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
* * * * *
8304209 AATTTCAGAGCAAATTTCAGCTTCTCAGCGAAGGATCTTGA
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * *
8304250 AC-CCAAGGCAACACAAGCTCAACTTCACGACGAAGGGGCGGCTGATTGTCAAC-AA-AATTT--
1 ACTCC-AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
* *
8304310 C-A-TTCAGAGTCAATTTCAACTTCACATCGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
8304350 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGA-CGACTGGTTGTCAACAAACAATTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG-CTGGTTGTCAACAAACAATTTCC
** * *
8304414 CGGTTCCAGAGCCAATTTCAACTTCAC-GACGGAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATATTGG
8304456 ACTC
1 ACTC
8304460 AGAACAATGC
Statistics
Matches: 1244, Mismatches: 116, Indels: 29
0.90 0.08 0.02
Matches are distributed among these distances:
99 1 0.00
100 73 0.06
101 4 0.00
102 6 0.00
104 5 0.00
105 150 0.12
106 1002 0.81
107 3 0.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:8305339 original size:19 final size:19
Alignment explanation
Indices: 8305258--8305348 Score: 51
Period size: 19 Copynumber: 4.6 Consensus size: 19
8305248 TTTTTTACAC
*
8305258 TATATAT-TA-TTATTATA
1 TATATATATATTTATTATT
* * *
8305275 TATACATATGTTTTTTATT
1 TATATATATATTTATTATT
* *
8305294 TATTTATATTCATTTGGTTATTT
1 TATATATA-T-ATTT-ATTA-TT
*
8305317 TTTAATACTATATTTATTATT
1 TAT-ATA-TATATTTATTATT
8305338 TATATATATAT
1 TATATATATAT
8305349 ATATATACTT
Statistics
Matches: 54, Mismatches: 12, Indels: 14
0.68 0.15 0.17
Matches are distributed among these distances:
17 6 0.11
18 1 0.02
19 17 0.31
20 4 0.07
21 7 0.13
22 6 0.11
23 8 0.15
24 3 0.06
25 2 0.04
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
TATATATATATTTATTATT
Found at i:8305645 original size:2 final size:2
Alignment explanation
Indices: 8305638--8305712 Score: 150
Period size: 2 Copynumber: 37.5 Consensus size: 2
8305628 TTTACTCATT
8305638 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8305680 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8305713 TAATATTTCA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8305737 original size:12 final size:13
Alignment explanation
Indices: 8305716--8305795 Score: 51
Period size: 13 Copynumber: 6.4 Consensus size: 13
8305706 TATATATTAA
8305716 TATTTCATTTATT
1 TATTTCATTTATT
8305729 TATTT-ATTTATT
1 TATTTCATTTATT
* *
8305741 T-TTCCTTTTATT
1 TATTTCATTTATT
* * *
8305753 TTTTTTACTTATT
1 TATTTCATTTATT
* *
8305766 TTTATTC-TTCATT
1 TAT-TTCATTTATT
8305779 T-TTTCATTTATT
1 TATTTCATTTATT
*
8305791 CATTT
1 TATTT
8305796 TTTCCTCTAA
Statistics
Matches: 51, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
11 5 0.10
12 21 0.41
13 23 0.45
14 2 0.04
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTTCATTTATT
Found at i:8305750 original size:16 final size:16
Alignment explanation
Indices: 8305731--8305771 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
8305721 CATTTATTTA
*
8305731 TTTATTTATTTTTCCT
1 TTTATTTATTTTTACT
8305747 TTTATTT-TTTTTACT
1 TTTATTTATTTTTACT
8305762 TATT-TTTATT
1 T-TTATTTATT
8305772 CTTCATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTATTTATTTTTACT
Found at i:8308730 original size:6 final size:6
Alignment explanation
Indices: 8308719--8308744 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8308709 CCGCCACAAA
8308719 TAATAT TAATAT TAATAT TAATAT TA
1 TAATAT TAATAT TAATAT TAATAT TA
8308745 TTTTATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TAATAT
Found at i:8313086 original size:56 final size:57
Alignment explanation
Indices: 8313020--8313128 Score: 152
Period size: 57 Copynumber: 1.9 Consensus size: 57
8313010 AGTTCATCGA
* *
8313020 TGCATAAAATGCATTTGATG-TTTCA-AAATAGC-CTGAGTGCATTGATGCATAGCTGG
1 TGCATAAAATGCATTCGATGTTTTCATAAA-A-CTCTGAGTGCATCGATGCATAGCTGG
*
8313076 TGCATCAAATGCATTCGATGTTTTCATAAAACTCTGAGTGCATCGATGCATAG
1 TGCATAAAATGCATTCGATGTTTTCATAAAACTCTGAGTGCATCGATGCATAG
8313129 TATGTGTATC
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
56 19 0.40
57 25 0.53
58 3 0.06
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (57 bp):
TGCATAAAATGCATTCGATGTTTTCATAAAACTCTGAGTGCATCGATGCATAGCTGG
Found at i:8313200 original size:20 final size:20
Alignment explanation
Indices: 8313175--8313230 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
8313165 ATTTATTCCA
8313175 TGGTGCATCGATGCATGGAT
1 TGGTGCATCGATGCATGGAT
*
8313195 TGGTGCATCTATGCATGGAT
1 TGGTGCATCGATGCATGGAT
*
8313215 TGGTGCATCGGTGCAT
1 TGGTGCATCGATGCAT
8313231 CACTTTGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (20 bp):
TGGTGCATCGATGCATGGAT
Found at i:8315890 original size:23 final size:23
Alignment explanation
Indices: 8315860--8315942 Score: 109
Period size: 23 Copynumber: 3.7 Consensus size: 23
8315850 TGCATGGCCT
*
8315860 TGTGCATCGATACACATTCAAGG
1 TGTGCATCGATGCACATTCAAGG
*
8315883 TGTGCATCGATGCACCTTCAAGG
1 TGTGCATCGATGCACATTCAAGG
8315906 TGT--ATCGATGCACATTCAAAGG
1 TGTGCATCGATGCACATTC-AAGG
8315928 -GATGCATCGATGCAC
1 TG-TGCATCGATGCAC
8315943 TGTTAAGTGC
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
21 14 0.26
22 5 0.09
23 24 0.45
24 10 0.19
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (23 bp):
TGTGCATCGATGCACATTCAAGG
Found at i:8315957 original size:44 final size:44
Alignment explanation
Indices: 8315861--8315961 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 44
8315851 GCATGGCCTT
*
8315861 GTGCATCGATACACATTCAAGGTGTGCATCGATGCACCTTCAAG
1 GTGCATCGATGCACATTCAAGGTGTGCATCGATGCACCTTCAAG
* *
8315905 GTGTATCGATGCACATTCAAAGG-GATGCATCGATGCA-CTGTTAA-
1 GTGCATCGATGCACATTC-AAGGTG-TGCATCGATGCACCT-TCAAG
8315949 GTGCATCGATGCA
1 GTGCATCGATGCA
8315962 TGAAGCACAA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
44 31 0.62
45 19 0.38
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.26
Consensus pattern (44 bp):
GTGCATCGATGCACATTCAAGGTGTGCATCGATGCACCTTCAAG
Found at i:8319803 original size:21 final size:19
Alignment explanation
Indices: 8319770--8319811 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 19
8319760 AGTTTATTTT
8319770 CATTTTTCAATTTTGAAATAA
1 CATTTTTCAATTTT-AAA-AA
8319791 CATTTTT-ATATTTTAAAAA
1 CATTTTTCA-ATTTTAAAAA
8319810 CA
1 CA
8319812 ATTTCTCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 4 0.20
20 4 0.20
21 12 0.60
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (19 bp):
CATTTTTCAATTTTAAAAA
Found at i:8321879 original size:65 final size:64
Alignment explanation
Indices: 8321725--8321890 Score: 178
Period size: 65 Copynumber: 2.6 Consensus size: 64
8321715 TTGGACCCTT
* *
8321725 AGTGCATCGATGCATGGCTGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAACTCTG
1 AGTGCATCGATGCATGGTTGGTGCATCGATGCATCAAATGCATTCAATG-TTTCATAAAACTCTG
* * ** *
8321790 AGTGCATCGATGCATAGTAT-GTGCATCGATGCATGAAATGCATTCAATG-TTCA-ATTTATTCC
1 AGTGCATCGATGCATGGT-TGGTGCATCGATGCATCAAATGCATTCAATGTTTCATA-AAACT-C
8321852 ATG
63 -TG
*
8321855 -GTGCATCGATGCATGGATTGGTGCATCGGTGCATCA
1 AGTGCATCGATGCATGG-TTGGTGCATCGATGCATCA
8321891 CTTTGAAAAA
Statistics
Matches: 85, Mismatches: 10, Indels: 12
0.79 0.09 0.11
Matches are distributed among these distances:
62 1 0.01
63 6 0.07
64 17 0.20
65 60 0.71
66 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (64 bp):
AGTGCATCGATGCATGGTTGGTGCATCGATGCATCAAATGCATTCAATGTTTCATAAAACTCTG
Found at i:8322852 original size:18 final size:19
Alignment explanation
Indices: 8322817--8322855 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
8322807 TCATTCAAGG
8322817 AGTATCGATACCTAAAGGGT
1 AGTATCGATACC-AAAGGGT
8322837 AGTATCGATACC-AAGGGT
1 AGTATCGATACCAAAGGGT
8322855 A
1 A
8322856 CCGATACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.37
20 12 0.63
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (19 bp):
AGTATCGATACCAAAGGGT
Found at i:8323591 original size:19 final size:20
Alignment explanation
Indices: 8323574--8323612 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8323564 GTTTATATGG
8323574 TCCTTCGGAACATATATGTAA
1 TCCTTCGGAACATATATG-AA
*
8323595 TCCTTTGGAACATATATG
1 TCCTTCGGAACATATATG
8323613 CGGTTCGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (20 bp):
TCCTTCGGAACATATATGAA
Found at i:8323653 original size:21 final size:21
Alignment explanation
Indices: 8323571--8323659 Score: 54
Period size: 21 Copynumber: 4.2 Consensus size: 21
8323561 AGGGTTTATA
* * *
8323571 TGGTCCTTCGGAACATATATG
1 TGGTCATTTGGAACACATATG
** * *
8323592 TAATCCTTTGGAACATATATG
1 TGGTCATTTGGAACACATATG
* * *
8323613 CGGTTC-GTTGGAACACATATT
1 TGG-TCATTTGGAACACATATG
* *
8323634 TGGTCATTTGGAATATATATG
1 TGGTCATTTGGAACACATATG
8323655 TGGTC
1 TGGTC
8323660 CTTAAGGAGA
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
20 2 0.04
21 48 0.92
22 2 0.04
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (21 bp):
TGGTCATTTGGAACACATATG
Found at i:8324710 original size:57 final size:57
Alignment explanation
Indices: 8324594--8324710 Score: 141
Period size: 57 Copynumber: 2.1 Consensus size: 57
8324584 TTATATTTTA
* *
8324594 TTTTATTTTAATTTTAGCATGATAGTTTCATTATTTATGTTTTAGCCCTAATTTTAT
1 TTTTATTTTAATTTTAGCATGATAGTTTCATTATTTATATTTTAGCCCTAATTTAAT
* * *
8324651 TTTTATTTTAATTTTTGCATG-TTGTTTGCA-TATTTAATCATTTTAGTCCTAA-TTAAT
1 TTTTATTTTAATTTTAGCATGATAGTTT-CATTATTT-AT-ATTTTAGCCCTAATTTAAT
8324708 TTT
1 TTT
8324711 GTATGATACC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
56 10 0.19
57 31 0.60
58 11 0.21
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.59
Consensus pattern (57 bp):
TTTTATTTTAATTTTAGCATGATAGTTTCATTATTTATATTTTAGCCCTAATTTAAT
Found at i:8327289 original size:41 final size:43
Alignment explanation
Indices: 8327173--8327292 Score: 133
Period size: 42 Copynumber: 2.9 Consensus size: 43
8327163 AAATTGGTAT
8327173 GTCCTTCGGGCCATC-AGTAA-ATCTTTCGAGCAAGATGATTAA
1 GTCCTTCGGGCCATCTA-TAAGATCTTTCGAGCAAGATGATTAA
* * * * *
8327215 ATCTTTTGGGTCATCTATCAG-TCTTTCGAGCAAGATGA-TAA
1 GTCCTTCGGGCCATCTATAAGATCTTTCGAGCAAGATGATTAA
* *
8327256 GTCCTTCGGGCCATCTATAAGACCTTT-GGGCAAGATG
1 GTCCTTCGGGCCATCTATAAGATCTTTCGAGCAAGATG
8327293 CTTTCATATG
Statistics
Matches: 63, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
41 28 0.44
42 34 0.54
43 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (43 bp):
GTCCTTCGGGCCATCTATAAGATCTTTCGAGCAAGATGATTAA
Found at i:8327508 original size:259 final size:258
Alignment explanation
Indices: 8327043--8327605 Score: 937
Period size: 259 Copynumber: 2.2 Consensus size: 258
8327033 GTTGTTTTTA
*
8327043 GATAATTTGAAAAATGAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTTCAGAAAATGAAAT
1 GATAATTTGAAAAATGAGAAAGCGATTTTC-AAGTTTCTCATTTAGTATTTTCAAAAAATGAAAT
* *
8327108 TTTTGAAAAGTAAGAAAGCAATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAT
65 TTTTGAAAAGTAAGAAAGCAATTTCCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAA
* * * ** *
8327173 GTCCTTCGGGCCATCAGTAAATCTTTCGAGCAAGATGATTAAATCTTTTGGGTCATCTATCAGTC
130 ATCCTTCGGGCCATCAGTAAATCTTTAGAGCAAGATGATTAAATCCTCCGGGTCATCTATCAATC
8327238 TTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTTGGGCAAGATGCTTTCATAT
195 TTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTTGGGCAAGATGCTTTCATAT
* *
8327302 GATAAGTTGAAAAATGAGAAAGTGATTTTCATAGTTTCTCATTTAGTATTTTCAAAAAATGAAAT
1 GATAATTTGAAAAATGAGAAAGCGATTTTCA-AGTTTCTCATTTAGTATTTTCAAAAAATGAAAT
* *
8327367 TTTTTAAAAGTAAGAAAGCAATTTTCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAA
65 TTTTGAAAAGTAAGAAAGCAATTTCCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAA
* * *
8327432 ATCCTTCGGGCCATCAGTAAGTCTTTAGAGCATGATGATTAAATCCTCCGGGTCATCTGTCAATC
130 ATCCTTCGGGCCATCAGTAAATCTTTAGAGCAAGATGATTAAATCCTCCGGGTCATCTATCAATC
*
8327497 TTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACTTTTGGGCAAGATGCTTTCATAT
195 TTTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTTGGGCAAGATGCTTTCATAT
*
8327561 GATAATTTGAAAAATGAGAAAGCGATTTTCAATGTTTTTCATTTA
1 GATAATTTGAAAAATGAGAAAGCGATTTTCAA-GTTTCTCATTTA
8327606 AAATTCTTCT
Statistics
Matches: 282, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
258 2 0.01
259 280 0.99
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (258 bp):
GATAATTTGAAAAATGAGAAAGCGATTTTCAAGTTTCTCATTTAGTATTTTCAAAAAATGAAATT
TTTGAAAAGTAAGAAAGCAATTTCCAAAGTTTATTACCTAGTAAACTATTTCCAAAATTGGTAAA
TCCTTCGGGCCATCAGTAAATCTTTAGAGCAAGATGATTAAATCCTCCGGGTCATCTATCAATCT
TTCGAGCAAGATGATAAGTCCTTCGGGCCATCTATAAGACCTTTGGGCAAGATGCTTTCATAT
Found at i:8327548 original size:41 final size:42
Alignment explanation
Indices: 8327429--8327551 Score: 126
Period size: 42 Copynumber: 3.0 Consensus size: 42
8327419 CCAAAATTGG
*
8327429 TAAATCCTTCGGGCCATC-AGTAAGTCTTTAGAGCATGATGAT
1 TAAATCCTTCGGGCCATCTA-TAAGTCTTTAGAGCAAGATGAT
* * * *
8327471 TAAATCCTCCGGGTCATCTGTCAA-TCTTTCGAGCAAGATGA-
1 TAAATCCTTCGGGCCATCTAT-AAGTCTTTAGAGCAAGATGAT
* * * *
8327512 TAAGTCCTTCGGGCCATCTATAAGACTTTTGGGCAAGATG
1 TAAATCCTTCGGGCCATCTATAAGTCTTTAGAGCAAGATG
8327552 CTTTCATATG
Statistics
Matches: 66, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
40 2 0.03
41 30 0.45
42 32 0.48
43 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (42 bp):
TAAATCCTTCGGGCCATCTATAAGTCTTTAGAGCAAGATGAT
Found at i:8327885 original size:12 final size:12
Alignment explanation
Indices: 8327868--8327907 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
8327858 ATACATGCTA
8327868 AGCATAAGTAGG
1 AGCATAAGTAGG
8327880 AGCAT-AGCTA--
1 AGCATAAG-TAGG
8327890 AGCATAAGTAGG
1 AGCATAAGTAGG
8327902 AGCATA
1 AGCATA
8327908 GCATTCATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 7 0.29
11 4 0.17
12 13 0.54
ACGTcount: A:0.42, C:0.12, G:0.28, T:0.17
Consensus pattern (12 bp):
AGCATAAGTAGG
Found at i:8327890 original size:22 final size:22
Alignment explanation
Indices: 8327864--8327909 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
8327854 GTGCATACAT
8327864 GCTAAGCATAAGTAGGAGCATA
1 GCTAAGCATAAGTAGGAGCATA
8327886 GCTAAGCATAAGTAGGAGCATA
1 GCTAAGCATAAGTAGGAGCATA
8327908 GC
1 GC
8327910 ATTCATTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.17
Consensus pattern (22 bp):
GCTAAGCATAAGTAGGAGCATA
Found at i:8332366 original size:14 final size:14
Alignment explanation
Indices: 8332349--8332378 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8332339 TTTTTTTTGT
8332349 TTCTATTTTATATA
1 TTCTATTTTATATA
*
8332363 TTCTCTTTTATATA
1 TTCTATTTTATATA
8332377 TT
1 TT
8332379 TTTATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (14 bp):
TTCTATTTTATATA
Found at i:8332623 original size:20 final size:20
Alignment explanation
Indices: 8332595--8332635 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8332585 TGACGAAAGG
* *
8332595 CTTATTTAGCCCGTTAACCA
1 CTTACTTAGACCGTTAACCA
*
8332615 CTTACTTAGACCGTTGACCA
1 CTTACTTAGACCGTTAACCA
8332635 C
1 C
8332636 CATGTTGGAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.32
Consensus pattern (20 bp):
CTTACTTAGACCGTTAACCA
Found at i:8333813 original size:20 final size:21
Alignment explanation
Indices: 8333788--8333880 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
8333778 TTTTCCCAAT
*
8333788 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
8333808 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
8333829 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
8333849 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
8333870 TCGCAATGCGA
1 TCGCAATGCGA
8333881 TACTTACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:8333833 original size:41 final size:41
Alignment explanation
Indices: 8333788--8333880 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
8333778 TTTTCCCAAT
8333788 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
8333829 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
8333870 TCGCAATGCGA
1 TCGCAATGCGA
8333881 TACTTACTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:8333893 original size:41 final size:41
Alignment explanation
Indices: 8333807--8333941 Score: 148
Period size: 41 Copynumber: 3.3 Consensus size: 41
8333797 GAATAAGTAA
** *
8333807 ATCGCAACGCGAATTGGGAAAATCGCAATGCGAATAAGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTTACT
8333848 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
* * ** * *
8333889 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTTACT
*
8333930 TTCGCAACGCGA
1 ATCGCAACGCGA
8333942 TACTGACTTT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
40 5 0.06
41 74 0.91
42 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTTACT
Found at i:8333894 original size:20 final size:20
Alignment explanation
Indices: 8333869--8333962 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 20
8333859 AATTGGGAAA
*
8333869 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTTACT
* * * **
8333889 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-TACT
*
8333910 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTTACT
* *
8333930 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTTACT
* *
8333950 TTCGCAAAGCGAT
1 ATCGCAACGCGAT
8333963 TTACATAGCG
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
20 45 0.76
21 14 0.24
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATACTTACT
Found at i:8334520 original size:19 final size:19
Alignment explanation
Indices: 8334482--8334548 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
8334472 TTCGAGAATG
8334482 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
8334502 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
**
8334521 AAAATCGCAACGCGAAACC
1 AAAATCGCAACGCGAAATA
8334540 AAAATCGCA
1 AAAATCGCA
8334549 TTGCGATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 30 0.73
20 11 0.27
ACGTcount: A:0.48, C:0.25, G:0.16, T:0.10
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:8334566 original size:19 final size:19
Alignment explanation
Indices: 8334544--8334728 Score: 165
Period size: 19 Copynumber: 10.1 Consensus size: 19
8334534 GAAACCAAAA
*
8334544 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
8334563 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
8334582 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
8334601 TCGCGGTTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
8334621 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
8334637 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
8334654 TCACGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
8334668 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
8334687 TCCGCGTTGCGATTCTCATT
1 T-CGCGTTGCGATTTTCATT
*
8334707 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
8334727 TC
1 TC
8334729 AACCAAAAGA
Statistics
Matches: 137, Mismatches: 16, Indels: 26
0.77 0.09 0.15
Matches are distributed among these distances:
14 20 0.15
15 1 0.01
16 3 0.02
17 3 0.02
19 60 0.44
20 49 0.36
21 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:8334621 original size:39 final size:38
Alignment explanation
Indices: 8334544--8334728 Score: 165
Period size: 33 Copynumber: 5.1 Consensus size: 38
8334534 GAAACCAAAA
*
8334544 TCGCATTGCGATTTTCATTTCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
*
8334582 TCGCGTTGCGATTTTTATTTCGCGGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGC-GTTGCGATTTTCATT
* * **
8334621 TCGCGTTGCGATTGTC---T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* * **
8334654 TCACGTTGCGA--TTC---TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
* *
8334687 TCCGCGTTGCGATTCTCATTATCTCGTTGCGATTTTCATT
1 T-CGCGTTGCGATTTTCATT-TCGCGTTGCGATTTTCATT
8334727 TC
1 TC
8334729 AACCAAAAGA
Statistics
Matches: 122, Mismatches: 15, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
31 3 0.02
33 37 0.30
34 9 0.07
35 1 0.01
36 3 0.02
38 21 0.17
39 30 0.25
40 18 0.15
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTTTCATT
Found at i:8334705 original size:20 final size:20
Alignment explanation
Indices: 8334671--8334728 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
8334661 GCGATTCTCT
**
8334671 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
8334691 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
8334711 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
8334729 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:8338200 original size:24 final size:24
Alignment explanation
Indices: 8338166--8338219 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
8338156 CTGAAACATC
* *
8338166 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
8338190 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
8338214 ATCAAA
1 ATCAAA
8338220 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:8339284 original size:20 final size:20
Alignment explanation
Indices: 8339259--8339314 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
8339249 ATTCATTTGA
8339259 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
8339279 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
* *
8339299 TTATCGCAACGAGAAA
1 CTATCGCAACGCGAAA
8339315 CTCGCAATGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:8339374 original size:19 final size:19
Alignment explanation
Indices: 8339347--8339402 Score: 103
Period size: 19 Copynumber: 2.9 Consensus size: 19
8339337 GCATTGCGAT
*
8339347 TTTCTCATTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
8339366 TTTCGCATTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
8339385 TTTCGCATTGCGATTTTC
1 TTTCGCATTGCGATTTTC
8339403 TCGTTGCGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.50
Consensus pattern (19 bp):
TTTCGCATTGCGATTTTCA
Found at i:8339386 original size:12 final size:14
Alignment explanation
Indices: 8339338--8339364 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8339328 ATGAAAATCG
8339338 CATTGCGATTTTCT
1 CATTGCGATTTTCT
8339352 CATTGCGATTTTC
1 CATTGCGATTTTC
8339365 ATTTCGCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (14 bp):
CATTGCGATTTTCT
Found at i:8341483 original size:19 final size:19
Alignment explanation
Indices: 8341403--8341520 Score: 86
Period size: 20 Copynumber: 6.4 Consensus size: 19
8341393 TAGTTTACTT
* *
8341403 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
8341423 TCGCAACGCGAAATGACTA
1 TCGCAACGCGAAATGAAAA
* ***
8341442 TCACAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGAAAA
*
8341462 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
8341481 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAATGAAAA
8341495 TCGCAACGCGAAATG-AAA
1 TCGCAACGCGAAATGAAAA
8341513 TCGCAACG
1 TCGCAACG
8341521 ACAAAATCGC
Statistics
Matches: 79, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
14 10 0.13
15 1 0.01
16 2 0.03
17 2 0.03
18 12 0.15
19 24 0.30
20 28 0.35
ACGTcount: A:0.42, C:0.25, G:0.19, T:0.14
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:8341496 original size:14 final size:14
Alignment explanation
Indices: 8341477--8341539 Score: 74
Period size: 14 Copynumber: 4.3 Consensus size: 14
8341467 ATGCGAAATG
8341477 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
8341491 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
8341507 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
8341523 AAAATCGCAACG-C
1 AAAATCGCAACGAC
8341536 AAAA
1 AAAA
8341540 CACAAATTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
13 5 0.12
14 21 0.49
16 8 0.19
18 9 0.21
ACGTcount: A:0.51, C:0.25, G:0.16, T:0.08
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:8341519 original size:32 final size:33
Alignment explanation
Indices: 8341461--8341535 Score: 134
Period size: 32 Copynumber: 2.3 Consensus size: 33
8341451 GGAAATGGCT
*
8341461 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
8341494 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
8341526 ATCGCAACGC
1 ATCGCAACGC
8341536 AAAACACAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
32 26 0.63
33 15 0.37
ACGTcount: A:0.45, C:0.25, G:0.19, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:8341587 original size:14 final size:14
Alignment explanation
Indices: 8341568--8341625 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
8341558 TTTCATTTCG
8341568 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
8341582 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
8341598 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
*
8341614 TGTTGCGATTTT
1 CGTTGCGATTTT
8341626 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 21 0.57
16 7 0.19
18 9 0.24
ACGTcount: A:0.10, C:0.16, G:0.24, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:8341632 original size:33 final size:33
Alignment explanation
Indices: 8341551--8341641 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
8341541 ACAAATTGTA
*
8341551 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
*
8341584 TTGCGA-TTTCATTTCGCATTGCGATTTTGTTG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
8341616 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
8341642 AGCCATTTCC
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 30 0.55
33 25 0.45
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:8341660 original size:20 final size:19
Alignment explanation
Indices: 8341626--8341680 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
8341616 TTGCGATTTT
*
8341626 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
8341645 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
8341665 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
8341681 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:8342179 original size:18 final size:18
Alignment explanation
Indices: 8342153--8342197 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
8342143 GTCGATCAGA
* *
8342153 TGATGGCTCTGTGTGAGG
1 TGATGGCTCTGGGCGAGG
*
8342171 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
8342189 TGATGGCTC
1 TGATGGCTC
8342198 CCGAAGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.13, C:0.16, G:0.42, T:0.29
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Done.