Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008620.1 Hibiscus syriacus cultivar Beakdansim tig00111582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13158977
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 43 of 64
Found at i:8696206 original size:46 final size:46
Alignment explanation
Indices: 8696163--8696471 Score: 492
Period size: 46 Copynumber: 6.7 Consensus size: 46
8696153 TTATTCATTA
* * * * * *
8696163 ATTTCAGTTATGACCTCTTTTCATGCCTTAATACATCCGTTCATAC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
* * * *
8696209 ATTTTAGTTATGGCATCCTTTCCTGCCTTATTGTATTCGTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
* *
8696255 ATTTTAGTTATGGCATCATTTAATGCCTTAATGCATCCGTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
8696301 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
*
8696347 ATTTTACTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
*
8696393 ATTTTACTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
8696439 ATTTTAGTTATGGCATCCTTTCATGCCTTAATG
1 ATTTTAGTTATGGCATCCTTTCATGCCTTAATG
8696472 ATAACATAGT
Statistics
Matches: 243, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 243 1.00
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (46 bp):
ATTTTAGTTATGGCATCCTTTCATGCCTTAATGCATCCGTTCATGC
Found at i:8696300 original size:20 final size:20
Alignment explanation
Indices: 8696277--8696438 Score: 108
Period size: 20 Copynumber: 7.2 Consensus size: 20
8696267 GCATCATTTA
8696277 ATGCCTTAATGCATCCGTTC
1 ATGCCTTAATGCATCCGTTC
* *
8696297 ATGCATTTTAGTTATGGCATCCTTTC
1 ATGC--CTTA---AT-GCATCCGTTC
8696323 ATGCCTTAATGCATCCGTTC
1 ATGCCTTAATGCATCCGTTC
* *
8696343 ATGCATTTTACTTATGGCATCCTTTC
1 ATGC--CTTA---AT-GCATCCGTTC
8696369 ATGCCTTAATGCATCCGTTC
1 ATGCCTTAATGCATCCGTTC
* *
8696389 ATGCATTTTACTTATGGCATCCTTTC
1 ATGC--CTTA---AT-GCATCCGTTC
8696415 ATGCCTTAATGCATCCGTTC
1 ATGCCTTAATGCATCCGTTC
8696435 ATGC
1 ATGC
8696439 ATTTTAGTTA
Statistics
Matches: 112, Mismatches: 12, Indels: 36
0.70 0.08 0.22
Matches are distributed among these distances:
20 43 0.38
21 6 0.05
22 9 0.08
24 9 0.08
25 6 0.05
26 39 0.35
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.40
Consensus pattern (20 bp):
ATGCCTTAATGCATCCGTTC
Found at i:8696317 original size:26 final size:25
Alignment explanation
Indices: 8696196--8696464 Score: 156
Period size: 26 Copynumber: 11.5 Consensus size: 25
8696186 TGCCTTAATA
*
8696196 CATCCGTTCATACATTTTAGTTATGG
1 CATCCGTTCATGCATTTTA-TTATGG
* * *
8696222 CATCCTTTCCTGC--CTTA-T-T-G
1 CATCCGTTCATGCATTTTATTATGG
* *
8696242 TATTCGTTCATGCATTTTAGTTATGG
1 CATCCGTTCATGCATTTTA-TTATGG
** * *
8696268 CATCATTTAATGC--CTTA--AT-G
1 CATCCGTTCATGCATTTTATTATGG
8696288 CATCCGTTCATGCATTTTAGTTATGG
1 CATCCGTTCATGCATTTTA-TTATGG
* *
8696314 CATCCTTTCATGC--CTTA--AT-G
1 CATCCGTTCATGCATTTTATTATGG
8696334 CATCCGTTCATGCATTTTACTTATGG
1 CATCCGTTCATGCATTTTA-TTATGG
* *
8696360 CATCCTTTCATGC--CTTA--AT-G
1 CATCCGTTCATGCATTTTATTATGG
8696380 CATCCGTTCATGCATTTTACTTATGG
1 CATCCGTTCATGCATTTTA-TTATGG
* *
8696406 CATCCTTTCATGC--CTTA--AT-G
1 CATCCGTTCATGCATTTTATTATGG
8696426 CATCCGTTCATGCATTTTAGTTATGG
1 CATCCGTTCATGCATTTTA-TTATGG
*
8696452 CATCCTTTCATGC
1 CATCCGTTCATGC
8696465 CTTAATGATA
Statistics
Matches: 181, Mismatches: 32, Indels: 60
0.66 0.12 0.22
Matches are distributed among these distances:
20 60 0.33
21 9 0.05
22 16 0.09
24 16 0.09
25 9 0.05
26 71 0.39
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (25 bp):
CATCCGTTCATGCATTTTATTATGG
Found at i:8698066 original size:24 final size:23
Alignment explanation
Indices: 8698028--8698135 Score: 101
Period size: 23 Copynumber: 4.7 Consensus size: 23
8698018 GAATTGTCCC
* *
8698028 GAAGGACCGCGTAGAATTTTTCCT
1 GAAGGACCACATAG-ATTTTTCCT
*
8698052 GAAGGACAACATAGATTTGTTCCT
1 GAAGGACCACATAGATTT-TTCCT
* *
8698076 -AAGAACCACATAGATTTTTCCC
1 GAAGGACCACATAGATTTTTCCT
* * *
8698098 GAATGACCACATAGATTTGTCCC
1 GAAGGACCACATAGATTTTTCCT
* *
8698121 AAAGGACCACGTAGA
1 GAAGGACCACATAGA
8698136 ACCCTCGACT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
22 4 0.06
23 50 0.71
24 16 0.23
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (23 bp):
GAAGGACCACATAGATTTTTCCT
Found at i:8698110 original size:46 final size:46
Alignment explanation
Indices: 8698016--8698135 Score: 123
Period size: 46 Copynumber: 2.6 Consensus size: 46
8698006 AAGTGCCACG
* * * * * *
8698016 TAGAATTGTCCCGAAGGACCGCGTAGAATTTTTCCTGAAGGACAACA
1 TAGATTTGTCCCAAAGAACCACATAG-ATTTTTCCCGAAGGACAACA
* * * *
8698063 TAGATTTGTTCCTAAGAACCACATAGATTTTTCCCGAATGACCACA
1 TAGATTTGTCCCAAAGAACCACATAGATTTTTCCCGAAGGACAACA
* *
8698109 TAGATTTGTCCCAAAGGACCACGTAGA
1 TAGATTTGTCCCAAAGAACCACATAGA
8698136 ACCCTCGACT
Statistics
Matches: 60, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
46 40 0.67
47 20 0.33
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (46 bp):
TAGATTTGTCCCAAAGAACCACATAGATTTTTCCCGAAGGACAACA
Found at i:8698373 original size:15 final size:16
Alignment explanation
Indices: 8698337--8698380 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
8698327 CGTAGATCCT
*
8698337 TTTTCACTTATAACAC
1 TTTTCACCTATAACAC
*
8698353 TTTTCACGTATAACA-
1 TTTTCACCTATAACAC
8698368 TTTTCACCTATAA
1 TTTTCACCTATAA
8698381 ATATACTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 12 0.46
16 14 0.54
ACGTcount: A:0.32, C:0.23, G:0.02, T:0.43
Consensus pattern (16 bp):
TTTTCACCTATAACAC
Found at i:8698937 original size:20 final size:20
Alignment explanation
Indices: 8698912--8698965 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
8698902 TTTCGACTGA
8698912 ATAGTATCGATACTCTACCC
1 ATAGTATCGATACTCTACCC
8698932 ATAGTATCGATACTCTACCC
1 ATAGTATCGATACTCTACCC
* *
8698952 ATAATACCGATACT
1 ATAGTATCGATACT
8698966 TCTCTTCTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30
Consensus pattern (20 bp):
ATAGTATCGATACTCTACCC
Found at i:8706070 original size:18 final size:18
Alignment explanation
Indices: 8706011--8706081 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 18
8706001 AGGGATTATC
* *
8706011 AGTGGTCATTTGGGACGT
1 AGTGGTCATTCGGGACAT
* * *
8706029 AGTGGACCTTCGAGACAT
1 AGTGGTCATTCGGGACAT
* *
8706047 AGTGGTCCTTTGGGACAT
1 AGTGGTCATTCGGGACAT
8706065 AGTGGTCATTCGGGACA
1 AGTGGTCATTCGGGACA
8706082 AATAATCAGT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.28
Consensus pattern (18 bp):
AGTGGTCATTCGGGACAT
Found at i:8712270 original size:19 final size:19
Alignment explanation
Indices: 8712246--8712290 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
8712236 ATTTGTGTAC
8712246 CGATGCATGGATAGTGCAT
1 CGATGCATGGATAGTGCAT
8712265 CGATGCATGGATAGTGCAT
1 CGATGCATGGATAGTGCAT
8712284 CGATGCA
1 CGATGCA
8712291 CACGTTAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (19 bp):
CGATGCATGGATAGTGCAT
Found at i:8712894 original size:18 final size:18
Alignment explanation
Indices: 8712871--8712941 Score: 106
Period size: 18 Copynumber: 3.9 Consensus size: 18
8712861 AGGGATTATC
*
8712871 AGTGGTCATTCGGGACAT
1 AGTGGTCCTTCGGGACAT
8712889 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
*
8712907 AATGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
* *
8712925 AGTGTTCCTTTGGGACA
1 AGTGGTCCTTCGGGACA
8712942 AATAATCAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.30
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:8720021 original size:14 final size:13
Alignment explanation
Indices: 8720002--8720040 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
8719992 TCTATATTGG
8720002 TTATAATCCTTATA
1 TTATAATCCTTA-A
8720016 TTATAAT-CTTAA
1 TTATAATCCTTAA
*
8720028 TTATAATCATTAA
1 TTATAATCCTTAA
8720041 ATTAATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 8 0.35
13 8 0.35
14 7 0.30
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (13 bp):
TTATAATCCTTAA
Found at i:8720167 original size:23 final size:24
Alignment explanation
Indices: 8720137--8720186 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
8720127 TTTTTATGTA
8720137 ATAATTAA-TTAATAA-TTT-AAAT
1 ATAATTAATTTAA-AATTTTAAAAT
8720159 ATAATTTAATTTAAAATTTTAAAAT
1 ATAA-TTAATTTAAAATTTTAAAAT
8720184 ATA
1 ATA
8720187 TATAAAAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 4 0.17
23 6 0.25
24 7 0.29
25 7 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (24 bp):
ATAATTAATTTAAAATTTTAAAAT
Found at i:8720423 original size:42 final size:43
Alignment explanation
Indices: 8720377--8720466 Score: 139
Period size: 42 Copynumber: 2.1 Consensus size: 43
8720367 GGTGGTAACA
*
8720377 TTTTTG-AGAGAATTTTAGCAATTTGATTTTGTAATTCTG-AAT
1 TTTTTGAAG-GAATTTTAGCAATTTGATTTTATAATTCTGAAAT
*
8720419 TTTTTGAAGGAATTTTGGCAATTTGATTTTATAATTCTGAAAT
1 TTTTTGAAGGAATTTTAGCAATTTGATTTTATAATTCTGAAAT
8720462 TTTTT
1 TTTTT
8720467 AGGGAAGGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
42 34 0.77
43 10 0.23
ACGTcount: A:0.28, C:0.04, G:0.16, T:0.52
Consensus pattern (43 bp):
TTTTTGAAGGAATTTTAGCAATTTGATTTTATAATTCTGAAAT
Found at i:8720744 original size:2 final size:2
Alignment explanation
Indices: 8720737--8721017 Score: 112
Period size: 2 Copynumber: 136.5 Consensus size: 2
8720727 ATATACTTTC
* *
8720737 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
8720779 TG TA TG TA TA TA TA TA TA TA TG TA TG TA TA -A GTA TA TA CA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
* * ** * *
8720820 TA GTA TA TA TG TA TGA TG TA CG TA GA TA AA TA TA TA TA TA -A GTA
1 TA -TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
* * * *
8720864 -A TA TA TA TA T- TT TA CA GT- TCA TA CA CTA TA TA GTT TA TA -A
1 TA TA TA TA TA TA TA TA TA -TA T-A TA TA -TA TA TA -TA TA TA TA
* * * *
8720904 TA TA TA TA TA TA TA TA TA GTT TA TA GTT TA TA GTT TA TA GTT TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA -TA TA TA -TA TA
* * * * *
8720948 TA GTT TA TA TA TT TA TA CCA TA TA -A TT TA TA TA CT- TA TA CTC
1 TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA -TA
8720990 TA TA CTA TA TA TA TA TA TA TA TA TA TA T
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA T
8721018 TAATATTTAT
Statistics
Matches: 202, Mismatches: 51, Indels: 52
0.66 0.17 0.17
Matches are distributed among these distances:
1 9 0.04
2 174 0.86
3 19 0.09
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8720978 original size:7 final size:7
Alignment explanation
Indices: 8720892--8720956 Score: 80
Period size: 7 Copynumber: 9.6 Consensus size: 7
8720882 TCATACACTA
8720892 TATAGTT
1 TATAGTT
* *
8720899 TATAATA
1 TATAGTT
*
8720906 TATA-TA
1 TATAGTT
*
8720912 TATA-TA
1 TATAGTT
8720918 TATAGTT
1 TATAGTT
8720925 TATAGTT
1 TATAGTT
8720932 TATAGTT
1 TATAGTT
8720939 TATAGTT
1 TATAGTT
8720946 TATAGTT
1 TATAGTT
8720953 TATA
1 TATA
8720957 TATTTATACC
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
6 12 0.22
7 42 0.78
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (7 bp):
TATAGTT
Found at i:8721187 original size:19 final size:19
Alignment explanation
Indices: 8721159--8721200 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
8721149 TTCATCATAC
*
8721159 ATAT-TATATTATTATATA
1 ATATATATATTAATATATA
8721177 ATATATATATTAATATATA
1 ATATATATATTAATATATA
*
8721196 TTATA
1 ATATA
8721201 ATTGTTTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
ATATATATATTAATATATA
Found at i:8721192 original size:17 final size:15
Alignment explanation
Indices: 8721163--8721199 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
8721153 TCATACATAT
8721163 TATATTATTATATAA
1 TATATTATTATATAA
8721178 TATATATATTA-AT-A
1 TATAT-TATTATATAA
8721192 TATATTAT
1 TATATTAT
8721200 AATTGTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 3 0.14
14 6 0.29
15 7 0.33
16 5 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TATATTATTATATAA
Found at i:8723254 original size:34 final size:34
Alignment explanation
Indices: 8723210--8723285 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
8723200 CAGTTTCCCC
* * *
8723210 CAGGTCCCTTTGCTGTGTGCAAGGGTAAGCTTTA
1 CAGGTTCCTTTGCTGTGAGCAAGGGTAAGCCTTA
* *
8723244 CAGGTTCCTTTGTTGTGAGTAAGGGTAAGCCTTA
1 CAGGTTCCTTTGCTGTGAGCAAGGGTAAGCCTTA
*
8723278 CAGTTTCC
1 CAGGTTCC
8723286 CCCAGGACCC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.18, C:0.20, G:0.28, T:0.34
Consensus pattern (34 bp):
CAGGTTCCTTTGCTGTGAGCAAGGGTAAGCCTTA
Found at i:8723391 original size:43 final size:43
Alignment explanation
Indices: 8723244--8723464 Score: 325
Period size: 43 Copynumber: 5.1 Consensus size: 43
8723234 GTAAGCTTTA
* * *
8723244 CAGGTTCCTTTGTTGTGAGTAAGGGTAAGCCTTACAGTTTCCCC
1 CAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTT-CCC
*
8723288 CAGGACCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCCC
1 CAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTT-CCC
** *
8723332 CAGGTCCCTTTCCTGTGTGCAAGGGTAAGCCTTAAAGTTTCCC
1 CAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCC
* *
8723375 CAGGTCCCTTTGCTGTGTGCAAGGGAAAGCCTTACAGTTTCCC
1 CAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCC
* *
8723418 CAGGTTCCTTTGTTGTGTTCAAGGGTAAGCCTTACAGTTTCCC
1 CAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCC
8723461 CAGG
1 CAGG
8723465 CTCTTTTTCT
Statistics
Matches: 162, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
43 86 0.53
44 76 0.47
ACGTcount: A:0.18, C:0.26, G:0.25, T:0.31
Consensus pattern (43 bp):
CAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTACAGTTTCCC
Found at i:8724937 original size:43 final size:43
Alignment explanation
Indices: 8724884--8725304 Score: 610
Period size: 43 Copynumber: 9.7 Consensus size: 43
8724874 ATTGTTTTAT
* *
8724884 AGTTTCCCCAGGTCCCTTTGCTGTGTGCAAGGGCAAGCCTTAC
1 AGTTTCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
* *
8724927 AGTTCCCCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
1 AGTTTCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
*
8724970 CGTTTCCCCAAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
1 AGTTTCCCC-AGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
8725014 AGTTTCCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
1 AGTTT-CCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
* * *
8725058 TGTTTCCCCAGGTCCCTTTGTTGTGTGAAAGGGAAAGCCTTAC
1 AGTTTCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
* * *
8725101 AGTTTCCCTAGGTTCCTTTGCTGTGTGCAAGGGTAAGCCTTAC
1 AGTTTCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
* * *
8725144 AGTTTCCCCAAGTCCCTTTGCTGTGTGCAAGGGAAAGCCTTAC
1 AGTTTCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
* * *
8725187 AGTTTCCCCATGTTCCTTTGTTGTGTGCAAGGGTAAGCCATAC
1 AGTTTCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
* *
8725230 AGTTTCTCCAGGTTCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
1 AGTTTCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
* * *
8725273 AGTTTCCCTAGG-CTCTTTTGTTATGTGCAAGG
1 AGTTTCCCCAGGTC-CCTTTGTTGTGTGCAAGG
8725305 ATAATACCTT
Statistics
Matches: 341, Mismatches: 34, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
43 262 0.77
44 75 0.22
45 4 0.01
ACGTcount: A:0.17, C:0.25, G:0.25, T:0.33
Consensus pattern (43 bp):
AGTTTCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCCTTAC
Found at i:8726215 original size:3 final size:3
Alignment explanation
Indices: 8726204--8726249 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
8726194 TTTATAATAA
8726204 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8726250 CAAATAATAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8728016 original size:17 final size:16
Alignment explanation
Indices: 8727987--8728028 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
8727977 ATCGCAGATC
8727987 AATT-TTTTATCTTTTAA
1 AATTATTTTATC--TTAA
8728004 AATTATTTT-TCTTAA
1 AATTATTTTATCTTAA
8728019 AATTATTTTA
1 AATTATTTTA
8728029 AAAGATAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 13 0.57
17 6 0.26
18 4 0.17
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (16 bp):
AATTATTTTATCTTAA
Found at i:8733035 original size:38 final size:38
Alignment explanation
Indices: 8732981--8733152 Score: 245
Period size: 38 Copynumber: 4.5 Consensus size: 38
8732971 ATTATCCATG
*
8732981 TGGGACATTTTAAAGGCTCACATCAGCATGAAAAATGT
1 TGGGACATTTTGAAGGCTCACATCAGCATGAAAAATGT
* * *
8733019 TGAGACATTTTGAAGGCTCATATCAACATGAAAAATGT
1 TGGGACATTTTGAAGGCTCACATCAGCATGAAAAATGT
* * *
8733057 TGGGATATTTTGAAGGCTCACATCATCATGAAAAATGC
1 TGGGACATTTTGAAGGCTCACATCAGCATGAAAAATGT
* *
8733095 TGGGGCATTTTGAAGGCTCACATCACCATGAAAAATGT
1 TGGGACATTTTGAAGGCTCACATCAGCATGAAAAATGT
* *
8733133 TGGGGCATTTTAAAGGCTCA
1 TGGGACATTTTGAAGGCTCA
8733153 TAACAGCAAG
Statistics
Matches: 120, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 120 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (38 bp):
TGGGACATTTTGAAGGCTCACATCAGCATGAAAAATGT
Found at i:8733073 original size:76 final size:76
Alignment explanation
Indices: 8732981--8733186 Score: 268
Period size: 76 Copynumber: 2.7 Consensus size: 76
8732971 ATTATCCATG
*
8732981 TGGGACATTTTAAAGGCTCACATCAGCATGAAAAATGTTGAGACATTTTGAAGGCTCATATCAAC
1 TGGGACATTTTAAAGGCTCACATCAGCATGAAAAATGTTGAGACATTTTGAAGGCTCACATCAAC
8733046 ATGAAAAATGT
66 ATGAAAAATGT
* * * * * * *
8733057 TGGGATATTTTGAAGGCTCACATCATCATGAAAAATGCTGGGGCATTTTGAAGGCTCACATCACC
1 TGGGACATTTTAAAGGCTCACATCAGCATGAAAAATGTTGAGACATTTTGAAGGCTCACATCAAC
8733122 ATGAAAAATGT
66 ATGAAAAATGT
* * * * * *
8733133 TGGGGCATTTTAAAGGCTCATAACAGCAAGAAATAATTTTGAACACATTTTGAA
1 TGGGACATTTTAAAGGCTCACATCAGCATGAAA-AATGTTG-AGACATTTTGAA
8733187 CGTTCGTATC
Statistics
Matches: 108, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
76 94 0.87
77 5 0.05
78 9 0.08
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.28
Consensus pattern (76 bp):
TGGGACATTTTAAAGGCTCACATCAGCATGAAAAATGTTGAGACATTTTGAAGGCTCACATCAAC
ATGAAAAATGT
Found at i:8734418 original size:63 final size:62
Alignment explanation
Indices: 8734274--8734685 Score: 424
Period size: 62 Copynumber: 6.6 Consensus size: 62
8734264 TCTTGTTTCC
* * * *
8734274 TAGAGTCAA-CCTTTGACTTCCTCATGAAGAGAAGTCAACATTTGTTATTTATGACTCCTCAG
1 TAGAGTCAATCC-TTGACTTCTTCGTGAAGAGAAGTCAACATTTATTATTTCTGACTCCTCAG
** * * *
8734336 TAGAGTCAATTATTGACTTCTTCGTAAAGAGAAGTCAACTTTTATTATTTCCCGACTCCTCAG
1 TAGAGTCAATCCTTGACTTCTTCGTGAAGAGAAGTCAACATTTATTATTT-CTGACTCCTCAG
* * * * *
8734399 TAGAGTCAATCCTTAACTTCATCGTGAAGAGAAGTCAACCTTTGTTATTCCCTGACTCCTCAG
1 TAGAGTCAATCCTTGACTTCTTCGTGAAGAGAAGTCAACATTTATTATT-TCTGACTCCTCAG
* * * *
8734462 TAGAGTCAATCTTTGACTT-TCTCATGAAGAGAAGTCAACCTGTATTATTTCTGACTCC-CTAG
1 TAGAGTCAATCCTTGACTTCT-TCGTGAAGAGAAGTCAACATTTATTATTTCTGACTCCTC-AG
* * *
8734524 TAGAGTCAATCTTTGACTTCTTCGTGAAGAGAATTCAACATTTGTTATTTCTGACTCC-CTAG
1 TAGAGTCAATCCTTGACTTCTTCGTGAAGAGAAGTCAACATTTATTATTTCTGACTCCTC-AG
* ** * * *
8734586 TAGAGTTAATATTTGACTTCCTCGTGAAGAGAAGTCAACATATATTATTTCTGACTCCCCAG
1 TAGAGTCAATCCTTGACTTCTTCGTGAAGAGAAGTCAACATTTATTATTTCTGACTCCTCAG
* * *
8734648 -AGGAG-CTAATTCTTGA-TTTTCTCGTAAAGAGAAGTCAA
1 TA-GAGTC-AATCCTTGACTTCT-TCGTGAAGAGAAGTCAA
8734686 TCTTTTTAAT
Statistics
Matches: 298, Mismatches: 42, Indels: 20
0.83 0.12 0.06
Matches are distributed among these distances:
61 4 0.01
62 187 0.63
63 107 0.36
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (62 bp):
TAGAGTCAATCCTTGACTTCTTCGTGAAGAGAAGTCAACATTTATTATTTCTGACTCCTCAG
Found at i:8734678 original size:124 final size:123
Alignment explanation
Indices: 8734286--8734685 Score: 468
Period size: 124 Copynumber: 3.2 Consensus size: 123
8734276 GAGTCAACCT
* * *
8734286 TTGACTTCCTCATGAAGAGAAGTCAACATTTGTTATTTATGACTCCTCAGTAGAGTCAATTATTG
1 TTGACTTCATCGTGAAGAGAAGTCAACATTTGTTATTTCTGACTCCTCAGTAGAGTCAATT-TTG
* * * * * * *
8734351 ACTTCTTCGTAAAGAGAAGTCAACTTTTATTATTTCCCGACTCCTCAGTAGAGTCAATCC
65 ACTTCCTCGTGAAGAGAAGTCAACATATATTATTT-CTGACTCCCCAGTAGAGTCAATTC
* * *
8734411 TTAACTTCATCGTGAAGAGAAGTCAACCTTTGTTATTCCCTGACTCCTCAGTAGAGTCAATCTTT
1 TTGACTTCATCGTGAAGAGAAGTCAACATTTGTTATT-TCTGACTCCTCAGTAGAGTCAAT-TTT
* * * * *
8734476 GACTTTCTCATGAAGAGAAGTCAACCTGTATTATTTCTGACTCCCTAGTAGAGTCAA-TC
64 GACTTCCTCGTGAAGAGAAGTCAACATATATTATTTCTGACTCCCCAGTAGAGTCAATTC
* * *
8734535 TTTGACTTCTTCGTGAAGAGAATTCAACATTTGTTATTTCTGACTCC-CTAGTAGAGTTAATATT
1 -TTGACTTCATCGTGAAGAGAAGTCAACATTTGTTATTTCTGACTCCTC-AGTAGAGTCAAT-TT
8734599 TGACTTCCTCGTGAAGAGAAGTCAACATATATTATTTCTGACTCCCCAG-AGGAG-CTAATTC
63 TGACTTCCTCGTGAAGAGAAGTCAACATATATTATTTCTGACTCCCCAGTA-GAGTC-AATTC
* *
8734660 TTGATTTTC-TCGTAAAGAGAAGTCAA
1 TTGA-CTTCATCGTGAAGAGAAGTCAA
8734686 TCTTTTTAAT
Statistics
Matches: 236, Mismatches: 31, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
123 3 0.01
124 90 0.38
125 89 0.38
126 53 0.22
127 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (123 bp):
TTGACTTCATCGTGAAGAGAAGTCAACATTTGTTATTTCTGACTCCTCAGTAGAGTCAATTTTGA
CTTCCTCGTGAAGAGAAGTCAACATATATTATTTCTGACTCCCCAGTAGAGTCAATTC
Found at i:8734807 original size:43 final size:43
Alignment explanation
Indices: 8734758--8735207 Score: 259
Period size: 43 Copynumber: 10.1 Consensus size: 43
8734748 GGAAAGCATC
* *
8734758 GAAGCAAATCAATCTCGAGTTTGATCTTCACAGAAGAGTAGTG
1 GAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTG
* *
8734801 GAAGCAAATCAATCTCGAGTCTAATCTTTACGGAAGAGTAGTG
1 GAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTG
* * * * * *
8734844 GAA-CAGATTCTTCTTATTTC-AGATTTGGTCTCCACGGAAGAGTAGTG
1 GAAGCA-A---ATC-AATCTCGAG-TCTGATCTTCACGGAAGAGTAGTG
* *
8734891 GAATCAAATCAATCTCGAGTCTGATCTTCACAGAAGAGTAGTG
1 GAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTG
* * ** * * *
8734934 GAA-CAGATTC-TTCTTATTTTAGATTTGGTCTCCACGGAAGAGTAGTG
1 GAAGCA-AATCAATC----TCGAG-TCTGATCTTCACGGAAGAGTAGTG
* *
8734981 GAAGCAAATCAATCTTGAGTCTGATCTTCACGGAAAAGTAGTG
1 GAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTG
* * * * * * * *
8735024 GAA-CATATTCTTCTTATTTCAAGATTTGGTCTCCACGAAAGAGTAGTG
1 GAAGCA-A---ATC-AATCTCGAG-TCTGATCTTCACGGAAGAGTAGTG
* *
8735072 GAAGCAAATCAATCTTGAGTCTGATTTTCACGGAAGAGTAGTG
1 GAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTG
* * * * * *
8735115 GAA-CAGATTCTTCTTATTTC-AGAT-TTAGTCTCCATGGAAGAGTAGTG
1 GAAGCA-A---ATC-AATCTCGAG-TCTGA-TCTTCACGGAAGAGTAGTG
* * *
8735162 GAAGAAAATCAATCTCGAGTCCGATCTCCACGGAAGAGTAGTG
1 GAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTG
8735205 GAA
1 GAA
8735208 CGGATTTCCC
Statistics
Matches: 305, Mismatches: 69, Indels: 66
0.69 0.16 0.15
Matches are distributed among these distances:
42 10 0.03
43 146 0.48
44 18 0.06
45 2 0.01
46 15 0.05
47 82 0.27
48 30 0.10
49 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (43 bp):
GAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTG
Found at i:8734943 original size:90 final size:90
Alignment explanation
Indices: 8734790--8735213 Score: 686
Period size: 90 Copynumber: 4.7 Consensus size: 90
8734780 GATCTTCACA
* *
8734790 GAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTAATCTTTACGGAAGAGTAGTGGAACAGATTCT
1 GAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTGGAACAGATTCT
8734855 TCTTATTTCAGATTTGGTCTCCACG
66 TCTTATTTCAGATTTGGTCTCCACG
* *
8734880 GAAGAGTAGTGGAATCAAATCAATCTCGAGTCTGATCTTCACAGAAGAGTAGTGGAACAGATTCT
1 GAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTGGAACAGATTCT
*
8734945 TCTTATTTTAGATTTGGTCTCCACG
66 TCTTATTTCAGATTTGGTCTCCACG
* * *
8734970 GAAGAGTAGTGGAAGCAAATCAATCTTGAGTCTGATCTTCACGGAAAAGTAGTGGAACATATTCT
1 GAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTGGAACAGATTCT
8735035 TCTTATTTCAAGATTTGGTCTCCACG
66 TCTTATTTC-AGATTTGGTCTCCACG
* * *
8735061 AAAGAGTAGTGGAAGCAAATCAATCTTGAGTCTGATTTTCACGGAAGAGTAGTGGAACAGATTCT
1 GAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTGGAACAGATTCT
* *
8735126 TCTTATTTCAGATTTAGTCTCCATG
66 TCTTATTTCAGATTTGGTCTCCACG
* * * *
8735151 GAAGAGTAGTGGAAGAAAATCAATCTCGAGTCCGATCTCCACGGAAGAGTAGTGGAACGGATT
1 GAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTGGAACAGATT
8735214 TCCCATCAAA
Statistics
Matches: 309, Mismatches: 24, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
90 223 0.72
91 86 0.28
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (90 bp):
GAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTGGAACAGATTCT
TCTTATTTCAGATTTGGTCTCCACG
Found at i:8735110 original size:181 final size:180
Alignment explanation
Indices: 8734790--8735213 Score: 686
Period size: 181 Copynumber: 2.4 Consensus size: 180
8734780 GATCTTCACA
* *
8734790 GAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTAATCTTTACGGAAGAGTAGTGGAACAGATTCT
1 GAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTGGAACAGATTCT
* *
8734855 TCTTATTTCAGATTTGGTCTCCACGGAAGAGTAGTGGAATCAAATCAATCTCGAGTCTGATCTTC
66 TCTTATTTCAGATTTGGTCTCCACGAAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTTC
* *
8734920 ACAGAAGAGTAGTGGAACAGATTCTTCTTATTTTAGATTTGGTCTCCACG
131 ACAGAAGAGTAGTGGAACAGATTCTTCTTATTTCAGATTTAGTCTCCACG
* * *
8734970 GAAGAGTAGTGGAAGCAAATCAATCTTGAGTCTGATCTTCACGGAAAAGTAGTGGAACATATTCT
1 GAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTGGAACAGATTCT
* *
8735035 TCTTATTTCAAGATTTGGTCTCCACGAAAGAGTAGTGGAAGCAAATCAATCTTGAGTCTGATTTT
66 TCTTATTTC-AGATTTGGTCTCCACGAAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTT
* *
8735100 CACGGAAGAGTAGTGGAACAGATTCTTCTTATTTCAGATTTAGTCTCCATG
130 CACAGAAGAGTAGTGGAACAGATTCTTCTTATTTCAGATTTAGTCTCCACG
* * * *
8735151 GAAGAGTAGTGGAAGAAAATCAATCTCGAGTCCGATCTCCACGGAAGAGTAGTGGAACGGATT
1 GAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTGGAACAGATT
8735214 TCCCATCAAA
Statistics
Matches: 223, Mismatches: 20, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
180 69 0.31
181 154 0.69
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (180 bp):
GAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTTCACGGAAGAGTAGTGGAACAGATTCT
TCTTATTTCAGATTTGGTCTCCACGAAAGAGTAGTGGAAGCAAATCAATCTCGAGTCTGATCTTC
ACAGAAGAGTAGTGGAACAGATTCTTCTTATTTCAGATTTAGTCTCCACG
Found at i:8735359 original size:3 final size:3
Alignment explanation
Indices: 8735351--8735391 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
8735341 GTTTATAATA
*
8735351 TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8735392 CAAATAATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:8737114 original size:17 final size:16
Alignment explanation
Indices: 8737085--8737126 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
8737075 ATCGCAGATC
8737085 AATT-TTTTATCTTTTAA
1 AATTATTTTATC--TTAA
8737102 AATTATTTT-TCTTAA
1 AATTATTTTATCTTAA
8737117 AATTATTTTA
1 AATTATTTTA
8737127 AAATATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 13 0.57
17 6 0.26
18 4 0.17
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (16 bp):
AATTATTTTATCTTAA
Found at i:8740409 original size:23 final size:23
Alignment explanation
Indices: 8740378--8740450 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
8740368 ATAGGTAAAA
* * *
8740378 ATATGATGTAATAGATAGCGCTT
1 ATATAATGTAATAGGTAGTGCTT
*
8740401 ATATAATGTAATAGGTAGTGTTT
1 ATATAATGTAATAGGTAGTGCTT
8740424 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGTGCTT
8740447 ATAT
1 ATAT
8740451 TGTAAAGTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:8740885 original size:23 final size:23
Alignment explanation
Indices: 8740854--8740926 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
8740844 ATAGGTAAAA
*
8740854 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
8740877 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
8740900 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
8740923 ATAT
1 ATAT
8740927 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:8740962 original size:476 final size:477
Alignment explanation
Indices: 8739955--8743104 Score: 5199
Period size: 476 Copynumber: 6.5 Consensus size: 477
8739945 TTTTACCTGC
* * *
8739955 TATATTGTAAGGTATCTATCATTTTTATAAAAGTGTCCATACATTTTTCACTGTGGAAAACATTA
1 TATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
8740020 ATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATT
66 ATTTAAGG--------T---T-AGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATT
8740085 TATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATT
119 TATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATT
8740150 TATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAA
184 TATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAA
* *
8740215 CAATCAAATACTTTTTTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAAC
249 CAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAAC
*
8740280 ACTATTAAAAAAAATTGAAACATAAATTACATAACTTAAAAAAAAGTATCGATCCTTTTTATAAA
314 ACTATT-AAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTAT-AA
*
8740345 AAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGATAGCGCTTATATAATGT
377 AAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGT
*
8740410 AATAGGTAGTGTTTATATAATGTAATAGGTAGTGCT
442 AATAGGTAGCGTTTATATAATGTAATAGGTAGTGCT
*
8740446 TATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTAGAAAACATTA
1 TATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
8740511 ATTTAAGGTTAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGT
66 ATTTAAGGTTAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGT
* * *
8740576 TACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTAAATATTTATTATTATATT
131 TACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTT
*
8740641 TGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTT-TAAAATATTAAAACAATCAAATAAT
196 TGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAT
* *
8740705 TTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTAGAAAATATGAAACACTATTAAAAAA
261 TTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAA
*
8740770 ATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCATTTTATAAAAAGTATGGACACT
326 ATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACT
8740835 TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
391 TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
8740900 ATATAATGTAATAGGTAGTGCT
456 ATATAATGTAATAGGTAGTGCT
*
8740922 TATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
1 TATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
* *
8740987 ATTTAAGATTAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTACTTTTTACGT
66 ATTTAAGGTTAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGT
8741052 TACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTT
131 TACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTT
8741117 TGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAT
196 TGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAT
* * *
8741182 TTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGAGAAAAATATGAAACACTATTAAAAAA
261 TTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAA
**
8741247 ATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATAAACACT
326 ATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACT
* *
8741312 TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGGGCTTATATAATGTAATAGGTAGCATTT
391 TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
*
8741377 ATATAATGTAATAAGTAGTGCT
456 ATATAATGTAATAGGTAGTGCT
*
8741399 TATATTGTAAAGTATCTATCTTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
1 TATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
*
8741464 ATTTAAGGTTAGTTTTAAGATATTAATTTAGTAATTATATGCGTCTAATGATTTATTTTTTACGT
66 ATTTAAGGTTAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGT
*
8741529 TACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATATT
131 TACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTT
* * *
8741594 TGGTTAATATTGTTACATTTAAATTCTAAATAATATTTTATAAAATATCAAAATAATCAAATATT
196 TGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAT
8741659 TTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAA
261 TTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAA
8741724 ATTGAAACATAAATTACATAACTTT-AAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACT
326 ATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACT
*
8741788 TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGCAGCGTTT
391 TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
8741853 ATATAATGTAATAGGTAGTGCT
456 ATATAATGTAATAGGTAGTGCT
* **
8741875 TATATTGTAAAGTATCTATCCTTTTAATAAAAGTGTCCATACTTTTTTCACTGTATAAAACATTA
1 TATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
* * *
8741940 ATTTAAGGTTAATTTTAAGATATTAATTTAGTAATTATAGGCGTATAATGATTTATTTTTTACAT
66 ATTTAAGGTTAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGT
*
8742005 TACGGTATATATTATTATTAAATTAAAAACAATAAAAATATATATTACATATTTATTATTATCTT
131 TACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTT
8742070 TGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAT
196 TGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAT
*
8742135 TTTTTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAA
261 TTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAA
* *
8742200 ATTGAAACATAAAATACATAACTTTAAAAAAA-TATCGATCCTTTCTATAAAAAGTATGGACACT
326 ATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACT
8742264 TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
391 TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
8742329 ATATAATGTAATAGGTAGTGCT
456 ATATAATGTAATAGGTAGTGCT
*
8742351 TATATTGTAAAGTATCTATCCTTTTAATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
1 TATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
*
8742416 ATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAAATATAGGCGTCTAATGATT
66 ATTTAAGG--------T---T-AGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATT
* *
8742481 TATTTTTTATGTTACGGTATATATTATTATTAAATTAAAAATAATAAACATATATATTACATATT
119 TATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATT
8742546 TATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAA
184 TATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAA
* *
8742611 CAATTAAATATTTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAAC
249 CAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAAC
*
8742676 ACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAA
314 ACTATT-AAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAA
* *
8742741 AAGTATAGACACTTTCAATATAATAGATAAAAATATGATGTAATAGGTAGCGCTTATATAATGTA
378 AAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTA
8742806 ATAGGTAGCGTTTATATAATGTAATAGGTAGCGTTTATATAATGTAACAGGTAGTGCT
443 ATAGGTAGCG-TT-TAT-A--T-A-A--T---G------TAA--T---AGGTAGTGCT
* *
8742864 TATAGTGTAAAGTATCTATCCTTTTAATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
1 TATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
8742929 ATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATT
66 ATTTAAGG--------T---T-AGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATT
* *
8742994 TATTTTTTATGTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATT
119 TATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATT
*
8743059 TATTATTATCTTTGGTTAATATTGTTGAATTTAAATTCTAAATAAT
184 TATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAAT
8743105 TGTACAACCG
Statistics
Matches: 2530, Mismatches: 90, Indels: 56
0.95 0.03 0.02
Matches are distributed among these distances:
476 971 0.38
477 629 0.25
478 79 0.03
479 156 0.06
480 1 0.00
483 1 0.00
484 1 0.00
487 1 0.00
488 234 0.09
489 37 0.01
490 90 0.04
491 71 0.03
492 3 0.00
493 1 0.00
495 1 0.00
496 1 0.00
497 1 0.00
499 1 0.00
502 1 0.00
508 3 0.00
510 1 0.00
513 246 0.10
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.40
Consensus pattern (477 bp):
TATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
ATTTAAGGTTAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGT
TACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATTATCTT
TGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAT
TTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAA
ATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACT
TTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTT
ATATAATGTAATAGGTAGTGCT
Found at i:8741362 original size:23 final size:23
Alignment explanation
Indices: 8741331--8741403 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
8741321 ATAGGTAAAA
* *
8741331 ATATGATGTAATAGGTAGGGCTT
1 ATATAATGTAATAGGTAGCGCTT
**
8741354 ATATAATGTAATAGGTAGCATTT
1 ATATAATGTAATAGGTAGCGCTT
* *
8741377 ATATAATGTAATAAGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
8741400 ATAT
1 ATAT
8741404 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.37, C:0.04, G:0.21, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:8741838 original size:23 final size:23
Alignment explanation
Indices: 8741807--8741879 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
8741797 ATAGGTAAAA
*
8741807 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
8741830 ATATAATGTAATAGGCAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
8741853 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
8741876 ATAT
1 ATAT
8741880 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:8741897 original size:953 final size:959
Alignment explanation
Indices: 8739955--8743104 Score: 5246
Period size: 953 Copynumber: 3.2 Consensus size: 959
8739945 TTTTACCTGC
* * * *
8739955 TATATTGTAAGGTATCTATCATTTTTATAAAAGTGTCCATACATTTTTCACTGTGGAAAACATTA
1 TATATTGTAAAGTATCTATCCTTTTAATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
8740020 ATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATT
66 ATTTAAGG-TA----TT--GTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATT
8740085 TATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATT
124 TATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATT
8740150 TATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAA
189 TATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAA
*
8740215 CAATCAAATACTTTTTTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAAC
254 CAATCAAATAATTTTTTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAAC
*
8740280 ACTATTAAAAAAAATTGAAACATAAATTACATAACTTAAAAAAAAGTATCGATCCTTTTTATAAA
319 ACTATT-AAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTAT-AA
*
8740345 AAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGATAGCGCTTATATAATGT
382 AAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGT
*
8740410 AATAGGTAGTGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATA
447 AATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATA
*
8740475 AAAGTGTCCATACTTTTTTCACTGTAGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAATTT
512 AAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAATTT
*
8740540 AGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATTAAAAA
577 AGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAA
*
8740605 CAATAAACATATATATTAAATATTTATTATTATATTTGGTTAATATTGTTAAATTTAAATTCTAA
642 CAATAAACATATATATTACATATTTATTATTATATTTGGTTAATATTGTTAAATTTAAATTCTAA
* *
8740670 ATAATATTTT-TAAAATATTAAAACAATCAAATAATTTTTTGTGTAAATGAAATTATTAAATTAA
707 ATAATATTTTATAAAATATCAAAACAATCAAATATTTTTTTGTGTAAATGAAATTATTAAATTAA
* *
8740734 TATTGTAGGTAGAAAATATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAA
772 TATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAA
*
8740799 AAAGTATCGATCCATTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
837 AAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTA
*
8740864 ATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCT
902 ATAGGTAGCGCTTATATAATGTAATAGGCAGCGTTTATATAATGTAATAGGTAGTGCT
* *
8740922 TATATTGTAAAGTATTTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
1 TATATTGTAAAGTATCTATCCTTTTAATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
*
8740987 ATTTAA-G-A-T-T-AGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTACTTTT
66 ATTTAAGGTATTGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTT
8741047 TACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATT
131 TACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATT
8741112 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
196 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
* * * *
8741177 ATAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGAGAAAAATATGAAACACTATTA
261 ATAATTTTTTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
**
8741242 AAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATAA
326 AAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGG
*
8741307 ACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGGGCTTATATAATGTAATAGGTAG
391 ACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAG
* * *
8741372 CATTTATATAATGTAATAAGTAGTGCTTATATTGTAAAGTATCTATCTTTTTTATAAAAGTGTCC
456 CGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCC
8741437 ATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAATTTAGTAATTAT
521 ATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAATTTAGTAATTAT
*
8741502 ATGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACA
586 AGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACA
*
8741567 TATATATTACATATTTATTATTATATTTGGTTAATATTGTTACATTTAAATTCTAAATAATATTT
651 TATATATTACATATTTATTATTATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTT
*
8741632 TATAAAATATCAAAATAATCAAATATTTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGG
716 TATAAAATATCAAAACAATCAAATATTTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGG
8741697 TGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTT-AAAAAAGTATCG
781 TGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCG
8741761 ATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGC
846 ATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGC
8741826 GCTTATATAATGTAATAGGCAGCGTTTATATAATGTAATAGGTAGTGCT
911 GCTTATATAATGTAATAGGCAGCGTTTATATAATGTAATAGGTAGTGCT
**
8741875 TATATTGTAAAGTATCTATCCTTTTAATAAAAGTGTCCATACTTTTTTCACTGTATAAAACATTA
1 TATATTGTAAAGTATCTATCCTTTTAATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
* *
8741940 ATTTAAGG---T-T-AATTTTAAGATATTAATTTAGTAATTATAGGCGTATAATGATTTATTTTT
66 ATTTAAGGTATTGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTT
* *
8742000 TACATTACGGTATATATTATTATTAAATTAAAAACAATAAAAATATATATTACATATTTATTATT
131 TACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATT
8742065 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
196 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
8742130 ATAATTTTTTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
261 ATAATTTTTTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
* *
8742195 AAAAAATTGAAACATAAAATACATAACTTTAAAAAAA-TATCGATCCTTTCTATAAAAAGTATGG
326 AAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGG
8742259 ACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAG
391 ACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAG
*
8742324 CGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTAATAAAAGTGTCC
456 CGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCC
8742389 ATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAA
521 ATACTTTTTTCACTGTGGAAAACATTAATTTAAGG--------T---T-AGTTTTAAGATATTAA
* *
8742454 TTTAGTAAATATAGGCGTCTAATGATTTATTTTTTATGTTACGGTATATATTATTATTAAATTAA
574 TTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAA
* *
8742519 AAATAATAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAATTC
639 AAACAATAAACATATATATTACATATTTATTATTATATTTGGTTAATATTGTTAAATTTAAATTC
*
8742584 TAAATAATATTTTATAAAATATCAAAACAATTAAATATTTTTTTGTGTAAATGAAATTATTAAAT
704 TAAATAATATTTTATAAAATATCAAAACAATCAAATATTTTTTTGTGTAAATGAAATTATTAAAT
8742649 TAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTT
769 TAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAACTTT
* * *
8742714 AAAAAAAGTATCGATCATTTTTATAAAAAGTATAGACACTTTCAATATAATAGATAAAAATATGA
833 AAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGA
8742779 TGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGCGTTTAT
898 TGTAATAGGTAGCGCTTATATAATGTAATA-G--GC--------------------AGCGTTTAT
*
8742844 ATAATGTAACAGGTAGTGCT
940 ATAATGTAATAGGTAGTGCT
*
8742864 TATAGTGTAAAGTATCTATCCTTTTAATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
1 TATATTGTAAAGTATCTATCCTTTTAATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
8742929 ATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATT
66 ATTTAAGG-TA----TT--GTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATT
* *
8742994 TATTTTTTATGTTACGATATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATT
124 TATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATT
*
8743059 TATTATTATCTTTGGTTAATATTGTTGAATTTAAATTCTAAATAAT
189 TATTATTATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAAT
8743105 TGTACAACCG
Statistics
Matches: 2057, Mismatches: 75, Indels: 68
0.94 0.03 0.03
Matches are distributed among these distances:
952 184 0.09
953 789 0.38
954 165 0.08
955 238 0.12
956 1 0.00
959 1 0.00
960 1 0.00
963 1 0.00
964 237 0.12
965 31 0.02
966 92 0.04
967 68 0.03
969 2 0.00
989 98 0.05
997 1 0.00
1000 1 0.00
1001 147 0.07
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.40
Consensus pattern (959 bp):
TATATTGTAAAGTATCTATCCTTTTAATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTA
ATTTAAGGTATTGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTT
TACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATTACATATTTATTATT
ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAA
ATAATTTTTTGTGTAAATAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
AAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGG
ACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAG
CGTTTATATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCC
ATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAGATATTAATTTAGTAATTAT
AGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACA
TATATATTACATATTTATTATTATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTT
TATAAAATATCAAAACAATCAAATATTTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGG
TGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTTTAAAAAAAGTATCG
ATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGC
GCTTATATAATGTAATAGGCAGCGTTTATATAATGTAATAGGTAGTGCT
Found at i:8742314 original size:23 final size:23
Alignment explanation
Indices: 8742283--8742355 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
8742273 ATAGGTAAAA
*
8742283 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
8742306 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
8742329 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
8742352 ATAT
1 ATAT
8742356 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:8742804 original size:23 final size:23
Alignment explanation
Indices: 8742773--8742867 Score: 145
Period size: 23 Copynumber: 4.1 Consensus size: 23
8742763 ATAGATAAAA
*
8742773 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
8742796 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
8742819 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
8742842 ATATAATGTAACAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
8742865 ATA
1 ATA
8742868 GTGTAAAGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:8743386 original size:20 final size:19
Alignment explanation
Indices: 8743363--8743409 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
8743353 CGATATACCA
8743363 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
8743383 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
8743403 GGTAAAA
1 GGTAAAA
8743410 CGTTACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:8743505 original size:181 final size:181
Alignment explanation
Indices: 8743151--8743619 Score: 688
Period size: 181 Copynumber: 2.6 Consensus size: 181
8743141 GATCCAAATT
* * * * * **
8743151 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACTGATATTGAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* * * * * *
8743216 AAACTGGTAAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTTC
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
* * *
8743281 ATGAATTTAAAAGGGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTTA
131 ATGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATAC-TTTA
*
8743333 AAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
* *
8743398 AAACCGGTAAAACGTTACCGGATATATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACTTT
66 AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
* ** *
8743462 GTGAATTTAAAAGAGAAGCAATTTTAGCGCCTATAATGTGTCGATACTTTA
131 ATGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTTA
* *
8743513 AAAATATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGAT
1 AAAA-ATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGAT
8743578 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATA
65 AAAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATA
8743620 TTTTCGTAAG
Statistics
Matches: 260, Mismatches: 26, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
180 8 0.03
181 156 0.60
182 96 0.37
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (181 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
AAACCGGTAAAACGATACCGGATATATTGAAAGTGTCGATACTTTAATATAAGGATCGACACTTC
ATGAATTTAAAAGAGAAGCAATTTTAAAGCCTATAAAGTGTCGATACTTTA
Found at i:8743558 original size:20 final size:19
Alignment explanation
Indices: 8743544--8743590 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
8743534 CGATATAACA
8743544 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
8743564 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
8743584 GGTAAAA
1 GGTAAAA
8743591 CGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:8743595 original size:17 final size:19
Alignment explanation
Indices: 8743555--8743595 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
8743545 GTAAAAATAT
*
8743555 GATAAAACCGGTATCAAAAT
1 GATAAAACCGG-ATCAAAAC
8743575 GATAAAACCGG-T-AAAAC
1 GATAAAACCGGATCAAAAC
8743592 GATA
1 GATA
8743596 CCGGATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 8 0.40
18 1 0.05
20 11 0.55
ACGTcount: A:0.51, C:0.15, G:0.17, T:0.17
Consensus pattern (19 bp):
GATAAAACCGGATCAAAAC
Found at i:8744891 original size:183 final size:183
Alignment explanation
Indices: 8744549--8745133 Score: 1005
Period size: 183 Copynumber: 3.2 Consensus size: 183
8744539 CAAAGTTTTC
*
8744549 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTTT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
* * *
8744614 CAAAAAGTGTCG--ATTGAAAAAACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAA
66 CAAAAAGTGTCGACATT---TACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAA
*
8744677 TATAATCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
128 TATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
8744733 ACACTTTTGT-ATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATATGTCGATACCTTG
1 ACACTTTT-TAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTG
*
8744797 TAAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATA
65 TCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATA
*
8744862 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATTG
130 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
8744916 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCATAATGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
*
8744981 CAACAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
66 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
*
8745046 AACCGGTATAAATATACCAGTTTTATGAGCGAATAGGTCTACAACCTATATCG
131 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
*
8745099 ACACTTTTTAATTTTGTGTCGGTACTTTATGTCCA
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCA
8745134 AAATTATAAT
Statistics
Matches: 382, Mismatches: 15, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
182 1 0.00
183 305 0.80
184 72 0.19
185 1 0.00
186 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34
Consensus pattern (183 bp):
ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
Found at i:8745224 original size:303 final size:303
Alignment explanation
Indices: 8744828--8746331 Score: 2738
Period size: 303 Copynumber: 5.0 Consensus size: 303
8744818 ACATCGGAAC
* * *
8744828 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
1 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGC
* * *
8744893 GAATAGGTCTACAACCTATATTGACACTTTTTAATATTGTGTCGGTACTTTATGTCCATAATGGA
66 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGA
*
8744958 AGAAAAATGTGTCGATACCTTGTCAACAAGTGTCGACATTTACACATCGGAACCCAGAATTATAA
131 AGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAA
*
8745023 TGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGCGAATAGGTCTAC
196 TGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAC
8745088 AACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
261 AACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
*
8745131 CCAAAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGC
1 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGC
8745196 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGA
66 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGA
*
8745261 AGAAAAATGTGTCGATACCTTATCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAA
131 AGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAA
* * *
8745326 TATAATAGATAATTTTGTAATATAATCGGTATAAATATACCTGTTTTATGAGCGAATAGGTCTAC
196 TGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAC
*
8745391 AACCTAAATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
261 AACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
*
8745434 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACAGGTATAAGTATACCGGTTTTATTAGC
1 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGC
8745499 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGA
66 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGA
*
8745564 AGAAAAATGTGTCGATACATTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAA
131 AGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAA
8745629 TGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAC
196 TGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAC
8745694 AACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
261 AACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
* *
8745737 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGATATAAGTATACCGGTTTTATTAAC
1 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGC
*
8745802 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTTTGTCCAGAATGGA
66 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGA
* *
8745867 AGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTATACATCGGAACCCATAATTATAA
131 AGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAA
*
8745932 TGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAC
196 TGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAC
8745997 AACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
261 AACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
* *
8746040 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGATATAAGTATACCGATTTTATTAGC
1 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGC
*
8746105 GAATAGGTATACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGA
66 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGA
* * *
8746170 AGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCTACATTTACACATCGGAACCCATAATTATAC
131 AGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAA
*
8746235 TGTAATAGATAATTTTGTAATATATCCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAC
196 TGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAC
*
8746300 AACCTATATCGACACTTTTTAATATTGTGTCG
261 AACCTATATCGACACTTTTTAATTTTGTGTCG
8746332 CTAATTTTAA
Statistics
Matches: 1162, Mismatches: 39, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
303 1162 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35
Consensus pattern (303 bp):
CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGC
GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGA
AGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAA
TGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAC
AACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
Found at i:8745228 original size:120 final size:120
Alignment explanation
Indices: 8745015--8745253 Score: 424
Period size: 120 Copynumber: 2.0 Consensus size: 120
8745005 CGGAACCCAG
8745015 AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGCGAAT
1 AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGCGAAT
*
8745080 AGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAA
66 AGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAA
* * * *
8745135 AATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAAT
1 AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGCGAAT
*
8745200 AGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCA
66 AGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCA
8745254 GAATGGAAGA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 113 1.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (120 bp):
AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGCGAAT
AGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAA
Found at i:8745527 original size:120 final size:120
Alignment explanation
Indices: 8745314--8745560 Score: 406
Period size: 120 Copynumber: 2.1 Consensus size: 120
8745304 ACATCGGAAC
*
8745314 CCAGAATTATAATATAATAGATAATTTTGTAATATAATCGGTATAAATATACCTGTTTTATGAGC
1 CCAGAATTATAATATAATAGATAATTTTGTAATATAATCGGTATAAATATACCGGTTTTATGAGC
*
8745379 GAATAGGTCTACAACCTAAATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTAAATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
* * * *
8745434 CCAGAATTATAATGTACTAGATAATTTTGTAATATAA-CAGGTATAAGTATACCGGTTTTATTAG
1 CCAGAATTATAATATAATAGATAATTTTGTAATATAATC-GGTATAAATATACCGGTTTTATGAG
**
8745498 CGAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGT
65 CGAATAGGTCTACAACCTAAATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
8745554 CCAGAAT
1 CCAGAAT
8745561 GGAAGAAAAA
Statistics
Matches: 118, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
119 1 0.01
120 117 0.99
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (120 bp):
CCAGAATTATAATATAATAGATAATTTTGTAATATAATCGGTATAAATATACCGGTTTTATGAGC
GAATAGGTCTACAACCTAAATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
Found at i:8745627 original size:486 final size:477
Alignment explanation
Indices: 8744549--8745743 Score: 1342
Period size: 486 Copynumber: 2.5 Consensus size: 477
8744539 CAAAGTTTTC
8744549 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTTT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATA-CTTTT
* *** *
8744614 CAAAAAGTGTCGATTGAAAAAACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATA
65 CAAAAAGTGTCGA--CATTTAACATCGGAACCCAAAATTATAATGTAATAGATAATTTTGTAATA
*
8744679 TAATCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTGT-
128 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTT-TA
*
8744743 ATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATATGTCGATACCTTGTAAAAAAGTGT
192 ATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATATGTCGATACCTTATAAAAAAGTGT
*
8744808 CGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATA
257 CGACATTTACACATCGGAACCCAGAATTATAATATAATAGATAATTTTGTAATATAACCGGTATA
* *
8744873 AATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATTGACACTTTTTAATATTGTGTCGG
322 AATATACCGGTTTTATGAGCGAATAGGTCTACAACCTAAATCGACACTTTTTAATATTGTGTCGG
* * ** *
8744938 TACTTTATGTCCATAATGGAAGAAAAATGTGTCGATACCTTGTCAACAAGTGTCGACATTTACAC
387 TACTTTATGTCCATAATGGAAGAAAAATGTGTAGATAACAGGT-AACAAGTATCGACATTTACAC
* * **
8745003 ATCGGAACCCAGAATTATAATGTAATAG
451 AGCGGAA-CCAGAATTACAACCTAATAG
* * * * *** ** *** ** *
8745031 ATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGC-GAATAGGTCTACAACCTAT
1 ACACTTTT-TAATAT----TGTGT--CGGTA-C---TTTATGTCCAGAAT-GGAAGA-AAAATGT
* * * *** * *
8745095 ATCGACACTTTTTAATTTTGTGTCGGTAC-TTT---AT--G--TCCAAAATTATAATGTACTAGA
53 GTCGATACTTTTCAA-AAAGTGTC-G-ACATTTAACATCGGAACCCAAAATTATAATGTAATAGA
* * *
8745152 TAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAATAGGTCTACAACCTATGT
115 TAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATAT
*
8745217 CGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTT
180 CGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATATGTCGATACCTT
*
8745282 ATCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATATAATAGATAATTTTGTAAT
245 ATAAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATATAATAGATAATTTTGTAAT
* *
8745347 ATAATCGGTATAAATATACCTGTTTTATGAGCGAATAGGTCTACAACCTAAATCGACACTTTTTA
310 ATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTAAATCGACACTTTTTA
* * * * * *
8745412 ATTTTGTGTCGGTACTTTATGTCCAGAATTATAATGTACTAGATAATTTTGTAATATAACAGGT-
375 ATATTGTGTCGGTACTTTATGTCC------ATAATGGA--AGAAAAATGTGT-AGATAACAGGTA
* ** ** * * * *
8745476 ATAAGTATACCG-GTTTTA-TTAGC-GAA-TAG-GTCTACAACCTATGTCG
431 ACAAGTAT--CGACATTTACACAGCGGAACCAGAAT-TACAACCTA-ATAG
*
8745522 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACATTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATAC-TTTT
*
8745587 CAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATAT
65 CAAAAAGTGTCGACATTTA-ACATCGGAACCCAAAATTATAATGTAATAGATAATTTTGTAATAT
8745652 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAAT
129 AACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAAT
*
8745717 TTTGTGTCGGTACTTTATGTCCAGAAT
194 ATTGTGTCGGTACTTTATGTCCAGAAT
8745744 TATAATGTAC
Statistics
Matches: 579, Mismatches: 93, Indels: 78
0.77 0.12 0.10
Matches are distributed among these distances:
477 2 0.00
478 4 0.01
479 15 0.03
480 15 0.03
481 4 0.01
482 8 0.01
483 7 0.01
484 3 0.01
485 1 0.00
486 412 0.71
487 3 0.01
488 1 0.00
489 3 0.01
490 17 0.03
491 8 0.01
492 14 0.02
493 25 0.04
494 27 0.05
495 9 0.02
496 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (477 bp):
ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACTTTTC
AAAAAGTGTCGACATTTAACATCGGAACCCAAAATTATAATGTAATAGATAATTTTGTAATATAA
CCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATAT
TGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATATGTCGATACCTTATAAAAAAGTGTCGAC
ATTTACACATCGGAACCCAGAATTATAATATAATAGATAATTTTGTAATATAACCGGTATAAATA
TACCGGTTTTATGAGCGAATAGGTCTACAACCTAAATCGACACTTTTTAATATTGTGTCGGTACT
TTATGTCCATAATGGAAGAAAAATGTGTAGATAACAGGTAACAAGTATCGACATTTACACAGCGG
AACCAGAATTACAACCTAATAG
Found at i:8745830 original size:120 final size:120
Alignment explanation
Indices: 8745617--8745863 Score: 422
Period size: 120 Copynumber: 2.1 Consensus size: 120
8745607 ACATCGGAAC
* *
8745617 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGATATAAATATACCGGTTTTATGAAC
*
8745682 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
* * *
8745737 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGATATAAGTATACCGGTTTTATTAAC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGATATAAATATACCGGTTTTATGAAC
* *
8745802 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTTTGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
8745857 CCAGAAT
1 CCAGAAT
8745864 GGAAGAAAAA
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGATATAAATATACCGGTTTTATGAAC
GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
Found at i:8746137 original size:120 final size:120
Alignment explanation
Indices: 8745924--8746166 Score: 405
Period size: 120 Copynumber: 2.0 Consensus size: 120
8745914 CGGAACCCAT
* *
8745924 AATTATAATGTAATAGATAATTTTGTAATATAACAGGTATAAATATACCGGTTTTATGAGCGAAT
1 AATTATAATGTAATAGATAATTTTGTAATATAACAGATATAAATATACCGATTTTATGAGCGAAT
* *
8745989 AGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAG
66 AGGTATACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAG
* * * *
8746044 AATTATAATGTACTAGATAATTTTGTAATATAACCGATATAAGTATACCGATTTTATTAGCGAAT
1 AATTATAATGTAATAGATAATTTTGTAATATAACAGATATAAATATACCGATTTTATGAGCGAAT
*
8746109 AGGTATACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAG
66 AGGTATACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAG
8746164 AAT
1 AAT
8746167 GGAAGAAAAA
Statistics
Matches: 114, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
120 114 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (120 bp):
AATTATAATGTAATAGATAATTTTGTAATATAACAGATATAAATATACCGATTTTATGAGCGAAT
AGGTATACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAG
Found at i:8749754 original size:20 final size:22
Alignment explanation
Indices: 8749729--8749781 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 22
8749719 ACTTTCAATA
*
8749729 TAATAGGTA-AA-AATATGATG
1 TAATAGGTAGAACAATATAATG
*
8749749 TAATAGGTAGAACTTATATAATG
1 TAATAGGTAGAAC-AATATAATG
8749772 TAATAGGTAG
1 TAATAGGTAG
8749782 CGTTTATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 9 0.32
21 2 0.07
23 17 0.61
ACGTcount: A:0.45, C:0.02, G:0.21, T:0.32
Consensus pattern (22 bp):
TAATAGGTAGAACAATATAATG
Found at i:8749772 original size:23 final size:23
Alignment explanation
Indices: 8749741--8749800 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
8749731 ATAGGTAAAA
*
8749741 ATATGATGTAATAGGTAGAACTT
1 ATATAATGTAATAGGTAGAACTT
***
8749764 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGAACTT
8749787 ATATAATGTAATAG
1 ATATAATGTAATAG
8749801 TAGTGCTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.40, C:0.03, G:0.20, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGAACTT
Found at i:8749816 original size:20 final size:20
Alignment explanation
Indices: 8749765--8749821 Score: 53
Period size: 22 Copynumber: 2.8 Consensus size: 20
8749755 GTAGAACTTA
* *
8749765 TATAATGTAATAGGTAGCGTT
1 TATATTGTAATA-GTAGCGCT
*
8749786 TATATAATGTAATAGTAGTGCT
1 TATAT--TGTAATAGTAGCGCT
8749808 TATATTGTAA-AGTA
1 TATATTGTAATAGTA
8749822 TCTATCCTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 4 0.13
20 5 0.16
21 4 0.13
22 11 0.35
23 7 0.23
ACGTcount: A:0.37, C:0.04, G:0.19, T:0.40
Consensus pattern (20 bp):
TATATTGTAATAGTAGCGCT
Found at i:8750192 original size:22 final size:22
Alignment explanation
Indices: 8750167--8750211 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
8750157 ATTACATAAC
*
8750167 TTTAAAAAAAGTATCGATCCTT
1 TTTAAAAAAAGTATCGATACTT
* *
8750189 TTTATAAAAAGTATGGATACTT
1 TTTAAAAAAAGTATCGATACTT
8750211 T
1 T
8750212 CAATATAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (22 bp):
TTTAAAAAAAGTATCGATACTT
Found at i:8750301 original size:23 final size:23
Alignment explanation
Indices: 8750229--8750301 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
8750219 ATATGTAAAA
* *
8750229 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGTGCTT
* *
8750252 ATACAATGTAATAGGTAGTGTTT
1 ATATAATGTAATAGGTAGTGCTT
8750275 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGTGCTT
8750298 ATAT
1 ATAT
8750302 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:8750749 original size:23 final size:23
Alignment explanation
Indices: 8750718--8750790 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
8750708 ATATGTAAAA
*
8750718 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
8750741 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
8750764 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
8750787 ATAT
1 ATAT
8750791 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:8751239 original size:23 final size:23
Alignment explanation
Indices: 8751208--8751280 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
8751198 ATTGGTAAAA
* *
8751208 ATATGATGTAATCGGTAGCACTT
1 ATATAATGTAATAGGTAGCACTT
**
8751231 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCACTT
* **
8751254 ATATAATGTAATAAGTAGTGCTT
1 ATATAATGTAATAGGTAGCACTT
8751277 ATAT
1 ATAT
8751281 TGTAAAGTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCACTT
Found at i:8751381 original size:490 final size:489
Alignment explanation
Indices: 8749357--8751439 Score: 3695
Period size: 489 Copynumber: 4.3 Consensus size: 489
8749347 ATATCGAAAC
* * *
8749357 CCATAATTTTTTCACTGTGAAAAACATTAATTTAAGGTTATCTTTTGAGTGGGTTTTAAGATATT
1 CCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATT
*
8749422 AATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATT
66 AATTTAGTAATTATAGGTGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATT
* * * *
8749487 AAAAACAATAAACATATATATTACATATTTATTATTATCTTTGTTTATTATTTTTAAATTTAAAT
131 AAAAACAAAAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAAT
* * * * *
8749552 ACTAAATAATATTTTATAAAATATGAAAACAATCAAAT-ATTTTTTGTGTAAATTAAATTATTAA
196 TCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
* *
8749616 ATTAATATTATAGGTGGAAAACATGAAACACTGTTAAAAAAATTGAAACATAAATTACATAACTT
261 ATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTT
*
8749681 TAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATG
326 TAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATATGTAAAAATATG
*
8749746 ATGTAATAGGTAGAACTTATATAATGTAATAGGTAGCGTTTATATAATGTAAT-AGTAGTGCTTA
391 ATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAAGTAGTGCTTA
*
8749810 TATTGTAAAGTATCTATCCTTATTATAAAAGTGT
456 TATTGTAAAGTATCTATCCTTTTTATAAAAGTGT
* *
8749844 CCATACTTTTTTCACTGTAGAAAACATTAATTTAAGGTTATCTTTTAAGTGAGTTTTAAGATATT
1 CCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATT
*
8749909 AATTTAATAATTATAGGTGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATT
66 AATTTAGTAATTATAGGTGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATT
*
8749974 AAAAACAAAAAACATATATATTACATATTTATTATTATCTTTGGCTAATATTGTTAAATTTAAAT
131 AAAAACAAAAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAAT
*
8750039 TCTAAATATTATTTTATAAAATATTAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
196 TCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
*
8750104 ATTAATATTTTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTT
261 ATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTT
*
8750169 TAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGATACTTTCAATATAATATGTAAAAATATG
326 TAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATATGTAAAAATATG
* * * *
8750234 ATGTAATAGGTAGCGCTTATACAATGTAATAGGTAGTGTTTATATAATGTAATAGGTAGTGCTTA
391 ATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAAGTAGTGCTTA
8750299 TATTGTAAAGTATCTATCCTTTTTATAAAAGTGT
456 TATTGTAAAGTATCTATCCTTTTTATAAAAGTGT
* * * *
8750333 CCATACTTTTTTCACAGTAGAAAATATTAATTTAAGGTTATCTTTTAAGTGAGTTTTAAGATATT
1 CCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATT
*
8750398 AATTTAATAATTATAGGTGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATT
66 AATTTAGTAATTATAGGTGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATT
8750463 AAAAACAAAAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAAT
131 AAAAACAAAAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAAT
8750528 TCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
196 TCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
*
8750593 ATTAATATTGTAGGCGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTT
261 ATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTT
8750658 TAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATATGTAAAAATATG
326 TAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATATGTAAAAATATG
* *
8750723 ATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAGGTAGTGCTTA
391 ATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAAGTAGTGCTTA
8750788 TATTGTAAAGTATCTATCCTTTTTATAAAAGTGT
456 TATTGTAAAGTATCTATCCTTTTTATAAAAGTGT
* *
8750822 CCATAATTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAATGAGTTTTAAGATATT
1 CCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATT
* *
8750887 AATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTTACGATATATATTATTATTAAATT
66 AATTTAGTAATTATAGGTGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATT
* *
8750952 AAAAACAATAAACATATATATTACATATTTATTATTATATTTGGTTAATATTGTTAAATTTAAAT
131 AAAAACAAAAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAAT
8751017 TCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
196 TCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
*
8751082 ATTAATATTGTAGGTGGAAAACATGAAATACTATTAAAAAAAATTGAAACATAAATTACATAACT
261 ATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAACT
* *
8751147 TTAAAAAAAGTATCAATTCTTTTTATAAAAAGTATGGACACTTTCAATATAAT-TGGTAAAAATA
325 TTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATAT-GTAAAAATA
*
8751211 TGATGTAATCGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAAGTAGTGCT
389 TGATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAAGTAGTGCT
*
8751276 TATATTGTAAAGTATCTATCTTTTTTATAAAAGTGT
454 TATATTGTAAAGTATCTATCCTTTTTATAAAAGTGT
8751312 CCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATT
1 CCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATT
8751377 AATTTAGTAATTATAGGTGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAA
66 AATTTAGTAATTATAGGTGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAA
8751440 GACATTTTCT
Statistics
Matches: 1533, Mismatches: 59, Indels: 5
0.96 0.04 0.00
Matches are distributed among these distances:
487 218 0.14
488 199 0.13
489 806 0.53
490 310 0.20
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.41
Consensus pattern (489 bp):
CCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATT
AATTTAGTAATTATAGGTGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATT
AAAAACAAAAAACATATATATTACATATTTATTATTATCTTTGGTTAATATTGTTAAATTTAAAT
TCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAAATGAAATTATTAA
ATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAATTACATAACTT
TAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAATATGTAAAAATATG
ATGTAATAGGTAGCACTTATATAATGTAATAGGTAGCGTTTATATAATGTAATAAGTAGTGCTTA
TATTGTAAAGTATCTATCCTTTTTATAAAAGTGT
Found at i:8753018 original size:19 final size:19
Alignment explanation
Indices: 8752973--8753009 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8752963 GGTCGGGTCT
*
8752973 GACCGGTCAAACCTGTTCA
1 GACCGGTCAAACCGGTTCA
8752992 GACCGGTCAAACCGGTTC
1 GACCGGTCAAACCGGTTC
8753010 GAATCGGTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.19
Consensus pattern (19 bp):
GACCGGTCAAACCGGTTCA
Found at i:8753044 original size:10 final size:9
Alignment explanation
Indices: 8752974--8753040 Score: 53
Period size: 9 Copynumber: 7.1 Consensus size: 9
8752964 GTCGGGTCTG
8752974 ACCGGTCAA
1 ACCGGTCAA
* *
8752983 ACCTGTTCAG
1 ACC-GGTCAA
8752993 ACCGGTCAA
1 ACCGGTCAA
*
8753002 ACCGGTTCGA
1 ACCGG-TCAA
* *
8753012 ATCGGTCGGA
1 ACCGGTC-AA
*
8753022 ATCGGTCAA
1 ACCGGTCAA
8753031 ACCGGTCAA
1 ACCGGTCAA
8753040 A
1 A
8753041 ACCGATTGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
9 24 0.51
10 23 0.49
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.18
Consensus pattern (9 bp):
ACCGGTCAA
Found at i:8760203 original size:19 final size:19
Alignment explanation
Indices: 8760181--8760250 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
8760171 GGGTCTGACA
* *
8760181 GGTCAAACCGGTTCGGACC
1 GGTCAAACCGGTACGAACC
8760200 GGTCAAACCGGTACGAACC
1 GGTCAAACCGGTACGAACC
* *
8760219 GGTCGGAACCGGT-CAAACC
1 GGTC-AAACCGGTACGAACC
*
8760238 AGTCAAAACCGGT
1 GGTC-AAACCGGT
8760251 TTTCCAGCAG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 36 0.84
20 7 0.16
ACGTcount: A:0.29, C:0.30, G:0.29, T:0.13
Consensus pattern (19 bp):
GGTCAAACCGGTACGAACC
Found at i:8760218 original size:10 final size:9
Alignment explanation
Indices: 8760181--8760237 Score: 51
Period size: 10 Copynumber: 6.0 Consensus size: 9
8760171 GGGTCTGACA
*
8760181 GGTCAAACC
1 GGTCGAACC
*
8760190 GGTTCGGACC
1 GG-TCGAACC
*
8760200 GGTCAAACC
1 GGTCGAACC
8760209 GGTACGAACC
1 GGT-CGAACC
8760219 GGTCGGAACC
1 GGTC-GAACC
*
8760229 GGTCAAACC
1 GGTCGAACC
8760238 AGTCAAAACC
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 15 0.38
10 24 0.62
ACGTcount: A:0.26, C:0.32, G:0.30, T:0.12
Consensus pattern (9 bp):
GGTCGAACC
Found at i:8760247 original size:29 final size:28
Alignment explanation
Indices: 8760184--8760250 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 28
8760174 TCTGACAGGT
*
8760184 CAAACCGGTTCGGACCGGTCAAACCGGTA
1 CAAACCGG-TCGGACCGGTCAAACCAGTA
*
8760213 CGAACCGGTCGGAACCGGTCAAACCAGT-
1 CAAACCGGTCGG-ACCGGTCAAACCAGTA
8760241 CAAAACCGGT
1 C-AAACCGGT
8760251 TTTCCAGCAG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 5 0.15
29 28 0.85
ACGTcount: A:0.30, C:0.31, G:0.27, T:0.12
Consensus pattern (28 bp):
CAAACCGGTCGGACCGGTCAAACCAGTA
Found at i:8773092 original size:6 final size:6
Alignment explanation
Indices: 8773081--8773110 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
8773071 GAAGACCTAT
8773081 TGGTCA TGGTCA TGGTCA TGGTCA TGGTCA
1 TGGTCA TGGTCA TGGTCA TGGTCA TGGTCA
8773111 CAGTCATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.33, T:0.33
Consensus pattern (6 bp):
TGGTCA
Found at i:8773116 original size:18 final size:18
Alignment explanation
Indices: 8773081--8773118 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8773071 GAAGACCTAT
**
8773081 TGGTCATGGTCATGGTCA
1 TGGTCATGGTCACAGTCA
8773099 TGGTCATGGTCACAGTCA
1 TGGTCATGGTCACAGTCA
8773117 TG
1 TG
8773119 ATACAAGGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (18 bp):
TGGTCATGGTCACAGTCA
Found at i:8774228 original size:18 final size:18
Alignment explanation
Indices: 8774205--8774251 Score: 78
Period size: 17 Copynumber: 2.7 Consensus size: 18
8774195 ATATATTATA
8774205 AGAAGAAGAAAAAAAAAT
1 AGAAGAAGAAAAAAAAAT
8774223 AGAAGAAG-AAAAAAAAT
1 AGAAGAAGAAAAAAAAAT
*
8774240 AGAAAAAGAAAA
1 AGAAGAAGAAAA
8774252 TAGAAAATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 16 0.59
18 11 0.41
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (18 bp):
AGAAGAAGAAAAAAAAAT
Found at i:8774249 original size:6 final size:6
Alignment explanation
Indices: 8774204--8774318 Score: 78
Period size: 6 Copynumber: 19.2 Consensus size: 6
8774194 TATATATTAT
* * *
8774204 AAGAAG AAGAAA AA-AAA ATAGAAG AAGAAA AA-AAA TAGAAA AAGAAA
1 AAGAAA AAGAAA AAGAAA A-AGAAA AAGAAA AAGAAA AAGAAA AAGAAA
* * * * *
8774251 ATAGAAA ATGAAA ATGAAA ACGAAGA AA-AAA AATGAAA ATGAGA AAG-AA
1 A-AGAAA AAGAAA AAGAAA AAGAA-A AAGAAA AA-GAAA AAGAAA AAGAAA
8774300 AAGAAA AAGAGAA AA-AAA A
1 AAGAAA AAGA-AA AAGAAA A
8774319 TGAGAGATGA
Statistics
Matches: 88, Mismatches: 12, Indels: 19
0.74 0.10 0.16
Matches are distributed among these distances:
5 18 0.20
6 51 0.58
7 19 0.22
ACGTcount: A:0.76, C:0.01, G:0.17, T:0.06
Consensus pattern (6 bp):
AAGAAA
Found at i:8774306 original size:25 final size:23
Alignment explanation
Indices: 8774243--8774307 Score: 76
Period size: 25 Copynumber: 2.7 Consensus size: 23
8774233 AAAAAATAGA
*
8774243 AAAAGAAAATAGAAAATGAAAATG
1 AAAAGAAAA-AAAAAATGAAAATG
8774267 AAAACGAAGAAAAAAAATGAAAATG
1 AAAA-GAA-AAAAAAAATGAAAATG
*
8774292 AGAAAGAAAAGAAAAA
1 A-AAAGAAAAAAAAAA
8774308 GAGAAAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
24 11 0.31
25 20 0.56
26 5 0.14
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.08
Consensus pattern (23 bp):
AAAAGAAAAAAAAAATGAAAATG
Found at i:8779528 original size:14 final size:14
Alignment explanation
Indices: 8779509--8779535 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8779499 TGTATTTGAG
8779509 ATTTAGGGATTTAA
1 ATTTAGGGATTTAA
8779523 ATTTAGGGATTTA
1 ATTTAGGGATTTA
8779536 GGGGATTGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
ATTTAGGGATTTAA
Found at i:8781582 original size:63 final size:68
Alignment explanation
Indices: 8781469--8781636 Score: 229
Period size: 63 Copynumber: 2.5 Consensus size: 68
8781459 TTGACTGACC
* * *
8781469 AAAACATAAATTAAATAATATATAAGTGACCAAATAGGTAATTTATCCTAAACAA-AAAT-A-T-
1 AAAATATAAATTAGATAATATATAAGTGACCAAATAGGTAATTTACCCTAAACAATAAATGAGTG
8781530 ATA
66 ATA
* * *
8781533 AAAAT-TATATTAGATAATATATAAGTGACCAAATAGGTAATTTACCCTAAATAATAATTGAGTG
1 AAAATATAAATTAGATAATATATAAGTGACCAAATAGGTAATTTACCCTAAACAATAAATGAGTG
* *
8781597 GTC
66 ATA
8781600 AAAATATAAATTAGATAATATATAAGTGACCAAATAG
1 AAAATATAAATTAGATAATATATAAGTGACCAAATAG
8781637 ATAGTTTTTG
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
63 45 0.50
64 7 0.08
65 1 0.01
66 1 0.01
67 6 0.07
68 30 0.33
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.30
Consensus pattern (68 bp):
AAAATATAAATTAGATAATATATAAGTGACCAAATAGGTAATTTACCCTAAACAATAAATGAGTG
ATA
Found at i:8787313 original size:18 final size:19
Alignment explanation
Indices: 8787290--8787332 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
8787280 CAGTAATCCT
8787290 ATTCC-CTGGTAATCTTAC
1 ATTCCACTGGTAATCTTAC
*
8787308 ATTCCCACTGGTAATCTTCC
1 ATT-CCACTGGTAATCTTAC
8787328 ATTCC
1 ATTCC
8787333 GTGAACCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 3 0.14
19 4 0.18
20 15 0.68
ACGTcount: A:0.21, C:0.33, G:0.09, T:0.37
Consensus pattern (19 bp):
ATTCCACTGGTAATCTTAC
Found at i:8787320 original size:20 final size:20
Alignment explanation
Indices: 8787295--8787332 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8787285 ATCCTATTCC
8787295 CTGGTAATCTTACATTCCCA
1 CTGGTAATCTTACATTCCCA
*
8787315 CTGGTAATCTTCCATTCC
1 CTGGTAATCTTACATTCC
8787333 GTGAACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.32, G:0.11, T:0.37
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:8787393 original size:19 final size:19
Alignment explanation
Indices: 8787369--8787412 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
8787359 TTTGGTTGGG
8787369 GGAATGTGAGATTCCCATA
1 GGAATGTGAGATTCCCATA
*
8787388 GGAATGTGAGATTCCCATG
1 GGAATGTGAGATTCCCATA
8787407 GGAATG
1 GGAATG
8787413 GAATCTACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.25
Consensus pattern (19 bp):
GGAATGTGAGATTCCCATA
Found at i:8788188 original size:37 final size:36
Alignment explanation
Indices: 8788112--8788188 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
8788102 TTTTTTTATT
*
8788112 TTTAATTTTGTAAAAAAATTTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAA-TTATATAAATATTATCAA
* *
8788149 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAA-AAAATTATATAAATATTAT-CAA
8788186 TTT
1 TTT
8788189 GTAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 13 0.37
37 18 0.51
38 4 0.11
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Found at i:8788647 original size:287 final size:286
Alignment explanation
Indices: 8788108--8788671 Score: 934
Period size: 287 Copynumber: 2.0 Consensus size: 286
8788098 AACCTTTTTT
* *
8788108 TATTTTTAATTTTGTAAAAAAATTTATATAAATATTATGAATTTAATTTTTTAAAGAAAATATAT
1 TATTTTCAATTTTGTAAAAAAAATTATATAAATATTATGAATTTAATTTTTTAAAGAAAATATAT
* *
8788173 AAATATTTTACAATTTGTAATATTATACAAATATATAATAAGGACAATTTAGTCAAATATACATT
66 AAATATTTTACAATTTGTAATATAAAACAAATATATAATAAGGACAATTTAGTCAAATATACATT
* *
8788238 CCAATAATCTTTTATTCCTTTAACCAAACACGGTAATCTTACATTCCTGCTAAACCAACCAAACA
131 ACAATAATCTTTTATTCCTTTAACCAAACACGATAATCTTACATTCCTGCTAAACCAACCAAACA
8788303 CAAAATACAACATTCCCAGTAATCCTATTCCCTGATAATCTTTTATTCCCACTGGTAATCTTACA
196 CAAAATACAACATTCCCAGTAATCCTATTCCCTGATAATCTTTTATTCCCACTGGTAATCTTACA
8788368 TTCCGTGAACCAAACGCACCCGTTTA
261 TTCCGTGAACCAAACGCACCCGTTTA
* * *
8788394 TATTTTCAATTTTGTAAAATAAAATTATATAAATTTTATGAATTTAAATTTTTTAAAGACAATTT
1 TATTTTCAATTTTGTAAAA-AAAATTATATAAATATTATGAATTT-AATTTTTTAAAGAAAATAT
* * *
8788459 ATAAATATTTTTCAATTTGATAA-A-AAAACAAATATATAATAAGGACATTTTGGTCAAATATAC
64 ATAAATATTTTACAATTTG-TAATATAAAACAAATATATAATAAGGACAATTTAGTCAAATATAC
*
8788522 ATTACAATAATCTTTTATTTCTTTAACCAAACACGATAATCTTACATTCCTGCTAAACCAACCAA
128 ATTACAATAATCTTTTATTCCTTTAACCAAACACGATAATCTTACATTCCTGCTAAACCAACCAA
* *
8788587 ACACAAAATACAACATTCCCAGTAATCCTATTCCCTGGTAATCTTTTATTCTCACTGGTAATCTT
193 ACACAAAATACAACATTCCCAGTAATCCTATTCCCTGATAATCTTTTATTCCCACTGGTAATCTT
* *
8788652 ATATTCCGTGAACTAAACGC
258 ACATTCCGTGAACCAAACGC
8788672 TGTAAGTTTG
Statistics
Matches: 258, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
286 18 0.07
287 201 0.78
288 36 0.14
289 3 0.01
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.37
Consensus pattern (286 bp):
TATTTTCAATTTTGTAAAAAAAATTATATAAATATTATGAATTTAATTTTTTAAAGAAAATATAT
AAATATTTTACAATTTGTAATATAAAACAAATATATAATAAGGACAATTTAGTCAAATATACATT
ACAATAATCTTTTATTCCTTTAACCAAACACGATAATCTTACATTCCTGCTAAACCAACCAAACA
CAAAATACAACATTCCCAGTAATCCTATTCCCTGATAATCTTTTATTCCCACTGGTAATCTTACA
TTCCGTGAACCAAACGCACCCGTTTA
Found at i:8790116 original size:40 final size:41
Alignment explanation
Indices: 8790007--8790124 Score: 116
Period size: 40 Copynumber: 2.9 Consensus size: 41
8789997 TATTTCATTC
* *
8790007 AAAAAATAAATCTAAATAATAATTATTAATTTATTAATAAATAAA
1 AAAAAATAAGT-TAACTAATAA-TATT-ATTT-TTAATAAATAAA
* *
8790052 AAAAAATAAGTTAACTAAT-CTATTATTTTTAATAAATAAT
1 AAAAAATAAGTTAACTAATAATATTATTTTTAATAAATAAA
* * *
8790092 AAAATATTA-TTAATTAATAATATTA-TTTTAATA
1 AAAAAATAAGTTAACTAATAATATTATTTTTAATA
8790125 CAGAAAGCCT
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
39 16 0.25
40 23 0.36
41 4 0.06
42 4 0.06
44 7 0.11
45 10 0.16
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.41
Consensus pattern (41 bp):
AAAAAATAAGTTAACTAATAATATTATTTTTAATAAATAAA
Found at i:8790122 original size:18 final size:18
Alignment explanation
Indices: 8790072--8790124 Score: 52
Period size: 21 Copynumber: 2.7 Consensus size: 18
8790062 TTAACTAATC
8790072 TATTATTTTTAATAAATAA
1 TATTA-TTTTAATAAATAA
* *
8790091 TAAAATATTATTAATTAATAA
1 T--ATTATT-TTAATAAATAA
8790112 TATTATTTTAATA
1 TATTATTTTAATA
8790125 CAGAAAGCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
18 5 0.19
19 6 0.22
20 2 0.07
21 14 0.52
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTATTTTAATAAATAA
Found at i:8790794 original size:20 final size:20
Alignment explanation
Indices: 8790769--8790810 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
8790759 TTAAAGCAAC
8790769 AACACGACTAAATTGAATAG
1 AACACGACTAAATTGAATAG
8790789 AACACGACTAAATTGAATAG
1 AACACGACTAAATTGAATAG
8790809 AA
1 AA
8790811 TTAAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.19
Consensus pattern (20 bp):
AACACGACTAAATTGAATAG
Found at i:8792757 original size:2 final size:2
Alignment explanation
Indices: 8792746--8792777 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8792736 ATTTATATCC
8792746 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8792778 CCGTGTAGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8792900 original size:44 final size:43
Alignment explanation
Indices: 8792852--8793083 Score: 179
Period size: 46 Copynumber: 5.1 Consensus size: 43
8792842 TATTTCATAG
8792852 TATATTTTTGAAAATATGTTA-TTTTGAAAATATATATGATATAATA
1 TATATTTTTGAAAATATG-TAGTTTTGAAAATATATAT-ATAT--TA
** * *
8792898 TATAATATATTAT-TTATTATGTATTTTTGAAAATATATTATATATTA
1 TAT-AT-T-TT-TGAAAATATGTAGTTTTGAAAATATA-TATATATTA
*
8792945 TATAATTTTTGAAATCATACG-AGTTTTGAAAATATAATATATATTA
1 TAT-ATTTTTGAAA--ATATGTAGTTTTGAAAATAT-ATATATATTA
*
8792991 TATAATTTTTGAAATCATATG-AGTTTTAAAAATATAATATATATTA
1 TAT-ATTTTTGAAA--ATATGTAGTTTTGAAAATAT-ATATATATTA
* * * *
8793037 TATATTTTTTAAAATATATAGTTTT-AATATATATATATAATA
1 TATATTTTTGAAAATATGTAGTTTTGAAAATATATATATATTA
8793079 -ATATT
1 TATATT
8793084 ATTATTATCC
Statistics
Matches: 161, Mismatches: 14, Indels: 27
0.80 0.07 0.13
Matches are distributed among these distances:
41 5 0.03
42 9 0.06
43 10 0.06
44 7 0.04
45 12 0.07
46 73 0.45
47 14 0.09
48 3 0.02
49 24 0.15
50 4 0.02
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (43 bp):
TATATTTTTGAAAATATGTAGTTTTGAAAATATATATATATTA
Found at i:8792933 original size:28 final size:29
Alignment explanation
Indices: 8792901--8792958 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
8792891 TATAATATAT
* *
8792901 AATATATTATTTATTATGT-ATTTTTGAA
1 AATATATTATATATTATATAATTTTTGAA
8792929 AATATATTATATATTATATAATTTTTGAA
1 AATATATTATATATTATATAATTTTTGAA
8792958 A
1 A
8792959 TCATACGAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 17 0.63
29 10 0.37
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.53
Consensus pattern (29 bp):
AATATATTATATATTATATAATTTTTGAA
Found at i:8792986 original size:46 final size:45
Alignment explanation
Indices: 8792922--8793075 Score: 215
Period size: 46 Copynumber: 3.4 Consensus size: 45
8792912 TATTATGTAT
*
8792922 TTTTGAAAATATATTATATATTATATAATTTTTGAAATCATACGAG
1 TTTTGAAAATATAATATATATTATATAATTTTTGAAATCATA-GAG
8792968 TTTTGAAAATATAATATATATTATATAATTTTTGAAATCATATGAG
1 TTTTGAAAATATAATATATATTATATAATTTTTGAAATCATA-GAG
* * * *
8793014 TTTTAAAAATATAATATATATTATATATTTTTTAAAAT-ATATAG
1 TTTTGAAAATATAATATATATTATATAATTTTTGAAATCATAGAG
*
8793058 TTTT-AATATAT-ATATATA
1 TTTTGAAAATATAATATATA
8793076 ATAATATTAT
Statistics
Matches: 101, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
42 7 0.07
43 6 0.06
44 6 0.06
45 3 0.03
46 79 0.78
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (45 bp):
TTTTGAAAATATAATATATATTATATAATTTTTGAAATCATAGAG
Found at i:8793070 original size:17 final size:18
Alignment explanation
Indices: 8793029--8793074 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
8793019 AAAATATAAT
*
8793029 ATATATTATATATTTTTTA
1 ATATA-TATATATGTTTTA
8793048 A-A-ATATATA-GTTTTA
1 ATATATATATATGTTTTA
8793063 ATATATATATAT
1 ATATATATATAT
8793075 AATAATATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
15 6 0.26
16 7 0.30
17 8 0.35
18 1 0.04
19 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATATATATATATGTTTTA
Found at i:8796082 original size:17 final size:17
Alignment explanation
Indices: 8796047--8796081 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8796037 TCTTACTAAC
*
8796047 TTGTTTTCTTTCATTTT
1 TTGTTTTATTTCATTTT
8796064 TTGTTTTATTTC-TTTT
1 TTGTTTTATTTCATTTT
8796080 TT
1 TT
8796082 TTATCATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.06, C:0.09, G:0.06, T:0.80
Consensus pattern (17 bp):
TTGTTTTATTTCATTTT
Found at i:8801773 original size:16 final size:16
Alignment explanation
Indices: 8801752--8801790 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
8801742 AGATGTAATT
8801752 TCTTTTCTGACAAACA
1 TCTTTTCTGACAAACA
*
8801768 TCTTTTTTGACAAACA
1 TCTTTTCTGACAAACA
8801784 TCTTTTC
1 TCTTTTC
8801791 CTTTCACCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.26, C:0.23, G:0.05, T:0.46
Consensus pattern (16 bp):
TCTTTTCTGACAAACA
Found at i:8803788 original size:16 final size:16
Alignment explanation
Indices: 8803767--8803807 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
8803757 TGCAAATCCA
8803767 GGTACCCGGATTT-TCG
1 GGTACCCGGATTTCT-G
8803783 GGTACCC-GATTTCTG
1 GGTACCCGGATTTCTG
8803798 GGTACCCGGA
1 GGTACCCGGA
8803808 ACTTTCGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.15, C:0.27, G:0.32, T:0.27
Consensus pattern (16 bp):
GGTACCCGGATTTCTG
Found at i:8803874 original size:15 final size:15
Alignment explanation
Indices: 8803855--8803941 Score: 129
Period size: 15 Copynumber: 5.7 Consensus size: 15
8803845 CCGGATGTTA
*
8803855 CGGGTACCCGGTAAA
1 CGGGTACCCGGTAAT
8803870 CGGGTACCCGGTAAT
1 CGGGTACCCGGTAAT
8803885 CGGGTACCCGGTAAT
1 CGGGTACCCGGTAAT
**
8803900 CGGGTACCCGGATTTT
1 CGGGTACCCGG-TAAT
8803916 GCGGGTACCCGGTAAT
1 -CGGGTACCCGGTAAT
8803932 CGGGTACCCG
1 CGGGTACCCG
8803942 ATACCCAATT
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
15 50 0.77
16 4 0.06
17 11 0.17
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (15 bp):
CGGGTACCCGGTAAT
Found at i:8806232 original size:90 final size:90
Alignment explanation
Indices: 8806079--8806256 Score: 320
Period size: 90 Copynumber: 2.0 Consensus size: 90
8806069 CCTAACACAC
*
8806079 CCTTTTATAACCAAGTTACCCTAATCATATTAGGGTTTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAACCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
* *
8806144 ATTTAATTAATTGGAATTTAATAAT
66 ATTTAATTAATTGAAATTAAATAAT
*
8806169 CCTTTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAACCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
8806234 ATTTAATTAATTGAAATTAAATA
66 ATTTAATTAATTGAAATTAAATA
8806257 TTCGGGATTA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 84 1.00
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (90 bp):
CCTTTTATAACCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
ATTTAATTAATTGAAATTAAATAAT
Found at i:8809625 original size:14 final size:14
Alignment explanation
Indices: 8809606--8809680 Score: 62
Period size: 12 Copynumber: 5.9 Consensus size: 14
8809596 GGTTTTGAAA
8809606 ATATAATATATATT
1 ATATAATATATATT
8809620 ATATAAT-T-T-TT
1 ATATAATATATATT
8809631 A-A-AATATATAGTT
1 ATATAATATATA-TT
8809644 -T-TAATATATA-T
1 ATATAATATATATT
8809655 ATAT-ATATATA-T
1 ATATAATATATATT
8809667 ATATATATATATAT
1 ATATA-ATATATAT
8809681 AATCCTCTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 21
0.70 0.00 0.30
Matches are distributed among these distances:
9 3 0.06
10 2 0.04
11 5 0.10
12 14 0.28
13 12 0.24
14 14 0.28
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (14 bp):
ATATAATATATATT
Found at i:8809652 original size:2 final size:2
Alignment explanation
Indices: 8809647--8809681 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8809637 TATAGTTTTA
8809647 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8809682 ATCCTCTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8809661 original size:46 final size:45
Alignment explanation
Indices: 8809511--8809671 Score: 125
Period size: 45 Copynumber: 3.5 Consensus size: 45
8809501 ATGGCATAAT
* *
8809511 ATATAGTATATTATTTATTATAT-ATTTTTGAAAACATATAAGTTTTAA
1 ATATA-TATA-TATATATTATATAATTTTT-AAAATATAT-AGTTTTAA
* * * * * **
8809559 AAACATGTTTA-ATA-TATATAATTTTTGAAATCATACGGGTTTTGAA
1 ATATATATATATATATTATATAATTTTTAAAAT-ATA-TAGTTTT-AA
8809605 A-ATATA-ATATATATTATATAATTTTTAAAATATATAGTTTTAA
1 ATATATATATATATATTATATAATTTTTAAAATATATAGTTTTAA
8809648 TATATATATATATATATATATATA
1 -ATATATATATATATAT-TATATA
8809672 TATATATATA
Statistics
Matches: 88, Mismatches: 15, Indels: 21
0.71 0.12 0.17
Matches are distributed among these distances:
43 2 0.02
44 16 0.18
45 30 0.34
46 29 0.33
47 8 0.09
48 3 0.03
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.47
Consensus pattern (45 bp):
ATATATATATATATATTATATAATTTTTAAAATATATAGTTTTAA
Found at i:8811415 original size:2 final size:2
Alignment explanation
Indices: 8811363--8811400 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
8811353 AACCCGCACC
8811363 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8811401 GCGTAATACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8811454 original size:13 final size:12
Alignment explanation
Indices: 8811432--8811467 Score: 56
Period size: 13 Copynumber: 3.0 Consensus size: 12
8811422 TACAAAAATG
8811432 TATATAATATAA
1 TATATAATATAA
8811444 TATAGTAATATAA
1 TATA-TAATATAA
8811457 TATAT-ATATAA
1 TATATAATATAA
8811468 ATCCACAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 6 0.26
12 5 0.22
13 12 0.52
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (12 bp):
TATATAATATAA
Found at i:8811515 original size:5 final size:5
Alignment explanation
Indices: 8811505--8811540 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
8811495 GCACTTAATG
8811505 TATAT TATAT TATAT TATAT TATAT TATAT TA-AT TA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TA
8811541 ACTCCTTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:8812551 original size:56 final size:56
Alignment explanation
Indices: 8812490--8812601 Score: 190
Period size: 56 Copynumber: 2.0 Consensus size: 56
8812480 GTTTGAATAA
*
8812490 TAAATTATTGATTTATATTTTATTTTTTAAAA-AAGCTTTTAAGACAATTAATGATT
1 TAAATTATTGATTTATATTTTATTTTTTAAAAGAA-CTTTTAAAACAATTAATGATT
*
8812546 TAAATTATTGATTTATATTTTATTTTTTAAAAGAATTTTTAAAACAATTAATGATT
1 TAAATTATTGATTTATATTTTATTTTTTAAAAGAACTTTTAAAACAATTAATGATT
8812602 AAGTGATGAA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
56 51 0.96
57 2 0.04
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (56 bp):
TAAATTATTGATTTATATTTTATTTTTTAAAAGAACTTTTAAAACAATTAATGATT
Found at i:8817847 original size:8 final size:9
Alignment explanation
Indices: 8817836--8817876 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
8817826 TTCTCTTAAC
8817836 ATATTA-AT
1 ATATTATAT
8817844 ATA-TATAT
1 ATATTATAT
8817852 ATATATATAT
1 ATAT-TATAT
8817862 ATATATATAT
1 ATAT-TATAT
8817872 ATATT
1 ATATT
8817877 TAGGGTAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 2 0.07
8 8 0.27
9 1 0.03
10 19 0.63
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
ATATTATAT
Found at i:8817849 original size:2 final size:2
Alignment explanation
Indices: 8817842--8817875 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8817832 TAACATATTA
8817842 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8817876 TTAGGGTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8819276 original size:3 final size:3
Alignment explanation
Indices: 8819268--8819420 Score: 93
Period size: 3 Copynumber: 51.7 Consensus size: 3
8819258 TATTTTTTAT
*
8819268 TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA TTA TGTA -TA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA T-TA
** *** * *
8819314 TTTA TCTA TT- TCG TT- TTA -TA CCC TT- TTA CTA TT- CTA TTA TTA
1 -TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
8819356 TTT TTA TTA TTC TTA TTA TTT TTA TTA TTC CTA GTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
8819404 TTA TTA TAA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
8819421 TACCTATTTT
Statistics
Matches: 115, Mismatches: 25, Indels: 20
0.72 0.16 0.12
Matches are distributed among these distances:
2 10 0.09
3 95 0.83
4 9 0.08
5 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:8819632 original size:13 final size:13
Alignment explanation
Indices: 8819614--8819652 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
8819604 TTCTTTTCTT
8819614 TTTGTTATTTTTC
1 TTTGTTATTTTTC
8819627 TTTGTT-TTTATTC
1 TTTGTTATTT-TTC
8819640 TTGTGTTATTTTT
1 TT-TGTTATTTTT
8819653 ATTTTATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 3 0.13
13 11 0.48
14 6 0.26
15 3 0.13
ACGTcount: A:0.08, C:0.05, G:0.10, T:0.77
Consensus pattern (13 bp):
TTTGTTATTTTTC
Found at i:8819650 original size:27 final size:27
Alignment explanation
Indices: 8819616--8819700 Score: 82
Period size: 27 Copynumber: 3.0 Consensus size: 27
8819606 CTTTTCTTTT
* *
8819616 TGTTATTTTTCTTTGT-TTTTATTCTTG
1 TGTTATTTTTATTT-TATTTTATTCTTA
*
8819643 TGTTATTTTTATTTTATTTTATTTTTA
1 TGTTATTTTTATTTTATTTTATTCTTA
* *
8819670 TTTTATTTTTGATTTTGATTTTGATTTTTA
1 TGTTATTTTT-ATTTT-ATTTT-ATTCTTA
8819700 T
1 T
8819701 ATTTATTGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 1 0.02
27 31 0.62
28 5 0.10
29 5 0.10
30 8 0.16
ACGTcount: A:0.14, C:0.02, G:0.08, T:0.75
Consensus pattern (27 bp):
TGTTATTTTTATTTTATTTTATTCTTA
Found at i:8819656 original size:6 final size:6
Alignment explanation
Indices: 8819645--8819707 Score: 69
Period size: 6 Copynumber: 10.8 Consensus size: 6
8819635 TATTCTTGTG
*
8819645 TTATTT TTA-TT TTA-TT TTATTT TTA-TT TTATTT TTGATTT TGATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TT-ATTT TTATTT
* *
8819691 TGATTT TTATAT TTATT
1 TTATTT TTATTT TTATT
8819708 GTTTTCCTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
5 15 0.30
6 30 0.60
7 5 0.10
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (6 bp):
TTATTT
Found at i:8825435 original size:84 final size:83
Alignment explanation
Indices: 8825294--8825592 Score: 404
Period size: 84 Copynumber: 3.6 Consensus size: 83
8825284 GATATTGCGT
* * * *
8825294 TCATTTGCAACATAACTTAAGGCTAGAAGGGTTATCTACCAACCAAAAACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCC-ATCAAAAACCTTCGAGTTCGACTA
*
8825359 TGTTCAGCTCCAAGGCACA
65 CGTTCAGCTCCAAGGCACA
* * *
8825378 TCATTTGTAGCATAGCTCAAGGCTAGAAGGGTTATCTGCCATTAAAAGACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCATCAAAA-ACCTTCGAGTTCGACTA
8825443 CGCTT-AGCTCCAAGGCACA
65 CG-TTCAGCTCCAAGGCACA
* * *
8825462 TCATTTGTAGCATAGCTCAAGGCTAGAA-GGTCTATCTGCCATCAAAATACCTTCGAGTTTGACT
1 TCATTTGCAGCATAACTCAAGGCTAGAAGGGT-TATCTGCCATCAAAA-ACCTTCGAGTTCGACT
* * *
8825526 ACGCTCAGCTCCAAGACATA
64 ACGTTCAGCTCCAAGGCACA
*
8825546 TCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAA
1 TCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCATCAAAA
8825593 GAAGGCACAT
Statistics
Matches: 193, Mismatches: 17, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
83 9 0.05
84 179 0.93
85 5 0.03
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (83 bp):
TCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCATCAAAAACCTTCGAGTTCGACTAC
GTTCAGCTCCAAGGCACA
Found at i:8825753 original size:81 final size:80
Alignment explanation
Indices: 8825594--8825765 Score: 213
Period size: 81 Copynumber: 2.1 Consensus size: 80
8825584 CCAACAAAAG
* * *
8825594 AAGGCACATCATTTGCAGCATAACTCAATGCGAGAAGGGTTATCTGCCAAAGACCTTTGAGTTCG
1 AAGGCACATCATTTGCAGCATAACTCAATGCGAGAAGAGCTATCTGCCAAAGACCTTCGAGTTCG
*
8825659 ATTCCACTCAGCTCA
66 ATTACACTCAGCTCA
* * *
8825674 AAGGCACTATCATTTGTAGCATAACAT-AA-GTCGAGAAGAGCTATCTGCTAAAGACCTTCGCGT
1 AAGGCAC-ATCATTTGCAGCATAAC-TCAATG-CGAGAAGAGCTATCTGCCAAAGACCTTCGAGT
* *
8825737 TTGATTACACTTAGCTCA
63 TCGATTACACTCAGCTCA
*
8825755 AAGGCAAATCA
1 AAGGCACATCA
8825766 AATTTACAGT
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
80 12 0.15
81 66 0.84
82 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (80 bp):
AAGGCACATCATTTGCAGCATAACTCAATGCGAGAAGAGCTATCTGCCAAAGACCTTCGAGTTCG
ATTACACTCAGCTCA
Found at i:8827504 original size:3 final size:3
Alignment explanation
Indices: 8827491--8827565 Score: 71
Period size: 3 Copynumber: 25.3 Consensus size: 3
8827481 ACCCTTTTAA
** * * * ** *
8827491 TAT TA- TAT TAT TAT TCC TAT TAT TCT TAT TAT TTT TAA TAT TCC TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8827538 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8827566 TATCTATTTT
Statistics
Matches: 56, Mismatches: 15, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
2 2 0.04
3 54 0.96
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:8827623 original size:7 final size:7
Alignment explanation
Indices: 8827611--8827641 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
8827601 TATATTATGT
8827611 TTTCTTC
1 TTTCTTC
8827618 TTTCTTC
1 TTTCTTC
8827625 TTTCTTC
1 TTTCTTC
8827632 TTTCTTC
1 TTTCTTC
8827639 TTT
1 TTT
8827642 TTTTATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTCTTC
Found at i:8827807 original size:15 final size:15
Alignment explanation
Indices: 8827787--8827838 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
8827777 ATATATATTC
8827787 TTTTCTTTTTGTTGT
1 TTTTCTTTTTGTTGT
8827802 TTTTCTTTTTGTTTGT
1 TTTTCTTTTTG-TTGT
*
8827818 TTTT-TGTTTGTT-T
1 TTTTCTTTTTGTTGT
8827831 TTATTCTT
1 TT-TTCTT
8827839 GTGTTATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 3 0.09
14 4 0.12
15 17 0.53
16 8 0.25
ACGTcount: A:0.02, C:0.06, G:0.12, T:0.81
Consensus pattern (15 bp):
TTTTCTTTTTGTTGT
Found at i:8827809 original size:20 final size:18
Alignment explanation
Indices: 8827784--8827822 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
8827774 TGTATATATA
*
8827784 TTCTTTTCTTTTTGTTGTTT
1 TTCTTTT-TGTTTGTT-TTT
8827804 TTCTTTTTGTTTGTTTTT
1 TTCTTTTTGTTTGTTTTT
8827822 T
1 T
8827823 GTTTGTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 7 0.39
20 7 0.39
ACGTcount: A:0.00, C:0.08, G:0.10, T:0.82
Consensus pattern (18 bp):
TTCTTTTTGTTTGTTTTT
Found at i:8827817 original size:16 final size:16
Alignment explanation
Indices: 8827787--8827830 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 16
8827777 ATATATATTC
8827787 TTTTCTTTTTG-TTGT
1 TTTTCTTTTTGTTTGT
8827802 TTTTCTTTTTGTTTGT
1 TTTTCTTTTTGTTTGT
*
8827818 TTTT-TGTTTGTTT
1 TTTTCTTTTTGTTT
8827831 TTATTCTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 19 0.70
16 8 0.30
ACGTcount: A:0.00, C:0.05, G:0.14, T:0.82
Consensus pattern (16 bp):
TTTTCTTTTTGTTTGT
Found at i:8827823 original size:11 final size:11
Alignment explanation
Indices: 8827793--8827832 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
8827783 ATTCTTTTCT
*
8827793 TTTTGTTGTTTT
1 TTTT-TTGTTTG
8827805 TCTTTTTGTTTG
1 T-TTTTTGTTTG
8827817 TTTTTTGTTTG
1 TTTTTTGTTTG
8827828 TTTTT
1 TTTTT
8827833 ATTCTTGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 15 0.58
12 8 0.31
13 3 0.12
ACGTcount: A:0.00, C:0.03, G:0.15, T:0.82
Consensus pattern (11 bp):
TTTTTTGTTTG
Found at i:8827840 original size:27 final size:27
Alignment explanation
Indices: 8827792--8827849 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
8827782 TATTCTTTTC
* * *
8827792 TTTTTGTTGTTTTTCTTTTTGT-TTGT
1 TTTTTGTTGTTTTTATTCTTGTGTTAT
8827818 TTTTTGTTTGTTTTTATTCTTGTGTTAT
1 TTTTTG-TTGTTTTTATTCTTGTGTTAT
8827846 TTTT
1 TTTT
8827850 ATTTTTTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 6 0.22
27 14 0.52
28 7 0.26
ACGTcount: A:0.03, C:0.03, G:0.14, T:0.79
Consensus pattern (27 bp):
TTTTTGTTGTTTTTATTCTTGTGTTAT
Found at i:8827853 original size:6 final size:6
Alignment explanation
Indices: 8827842--8827889 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
8827832 TATTCTTGTG
* * * *
8827842 TTATTT TTATTTT TTAATT TGATTT TGATTT TTATAT TTATTT TTATT
1 TTATTT TTA-TTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATT
8827890 GTTTTTCCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (6 bp):
TTATTT
Found at i:8827886 original size:19 final size:18
Alignment explanation
Indices: 8827842--8827894 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 18
8827832 TATTCTTGTG
8827842 TTATTTTTATTTTTTAAT
1 TTATTTTTATTTTTTAAT
*
8827860 TTGATTTTGA-TTTTTATAT
1 TT-ATTTTTATTTTTTA-AT
8827879 TTATTTTTATTGTTTT
1 TTATTTTTATT-TTTT
8827895 TCCTTTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 14 0.48
19 11 0.38
20 4 0.14
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (18 bp):
TTATTTTTATTTTTTAAT
Found at i:8828600 original size:16 final size:18
Alignment explanation
Indices: 8828568--8828621 Score: 53
Period size: 16 Copynumber: 3.2 Consensus size: 18
8828558 TATTTATTTT
*
8828568 TTAAAAATTATT--TATA
1 TTAAAAATTATTAAAATA
8828584 TTAAAAA-TA-TAAAATA
1 TTAAAAATTATTAAAATA
* *
8828600 TGAAAAATTATTAAAATT
1 TTAAAAATTATTAAAATA
8828618 TTAA
1 TTAA
8828622 TACATTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
14 1 0.03
15 2 0.07
16 16 0.53
17 2 0.07
18 9 0.30
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (18 bp):
TTAAAAATTATTAAAATA
Found at i:8829558 original size:18 final size:18
Alignment explanation
Indices: 8829535--8829589 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 18
8829525 GTTCAGAATT
*
8829535 TGTCCCGAATGACCACTA
1 TGTCCCGAAGGACCACTA
*
8829553 TGTCCCGTAGGACCACTGGA
1 TGTCCCGAAGGACCACT--A
8829573 TACGTCCCGAAGGACCA
1 T--GTCCCGAAGGACCA
8829590 TTGGATACGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 15 0.50
20 2 0.07
22 13 0.43
ACGTcount: A:0.25, C:0.33, G:0.24, T:0.18
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:8829586 original size:22 final size:22
Alignment explanation
Indices: 8829554--8829609 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
8829544 TGACCACTAT
*
8829554 GTCCCGTAGGACCACTGGATAC
1 GTCCCGAAGGACCACTGGATAC
*
8829576 GTCCCGAAGGACCATTGGATAC
1 GTCCCGAAGGACCACTGGATAC
8829598 GTCCCGAAGGAC
1 GTCCCGAAGGAC
8829610 TAATATACCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.25, C:0.30, G:0.29, T:0.16
Consensus pattern (22 bp):
GTCCCGAAGGACCACTGGATAC
Found at i:8836488 original size:18 final size:19
Alignment explanation
Indices: 8836465--8836544 Score: 72
Period size: 22 Copynumber: 3.9 Consensus size: 19
8836455 GTTCAGAATT
8836465 TGTCCCGAATGACCACT-A
1 TGTCCCGAATGACCACTGA
*
8836483 TGTCCCGAAGGACCACTGGA
1 TGTCCCGAATGACCACT-GA
*
8836503 TACGTCCCGAATGACCATTGGA
1 T--GTCCCGAATGACCACT-GA
*
8836525 TACGTCCCGAAGGACCACTG
1 T--GTCCCGAATGACCACTG
8836545 GATACGTCCC
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
18 16 0.30
20 2 0.04
21 1 0.02
22 34 0.64
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (19 bp):
TGTCCCGAATGACCACTGA
Found at i:8836512 original size:22 final size:22
Alignment explanation
Indices: 8836484--8836561 Score: 138
Period size: 22 Copynumber: 3.5 Consensus size: 22
8836474 TGACCACTAT
8836484 GTCCCGAAGGACCACTGGATAC
1 GTCCCGAAGGACCACTGGATAC
* *
8836506 GTCCCGAATGACCATTGGATAC
1 GTCCCGAAGGACCACTGGATAC
8836528 GTCCCGAAGGACCACTGGATAC
1 GTCCCGAAGGACCACTGGATAC
8836550 GTCCCGAAGGAC
1 GTCCCGAAGGAC
8836562 TAATATACCC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.27, C:0.31, G:0.27, T:0.15
Consensus pattern (22 bp):
GTCCCGAAGGACCACTGGATAC
Found at i:8838764 original size:22 final size:22
Alignment explanation
Indices: 8838724--8838765 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
8838714 AACATCTCAG
8838724 TAATCAAAAAATTATAAATAAA
1 TAATCAAAAAATTATAAATAAA
*
8838746 TAATGCAAATAATTA-AAATA
1 TAAT-CAAAAAATTATAAATA
8838766 TTATTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.29
Consensus pattern (22 bp):
TAATCAAAAAATTATAAATAAA
Found at i:8838908 original size:37 final size:36
Alignment explanation
Indices: 8838856--8838927 Score: 117
Period size: 37 Copynumber: 2.0 Consensus size: 36
8838846 CAACCTAAGT
*
8838856 AATTCATTTATAAGCAACTATAGTAATAAGAAAAAGC
1 AATTCATTTACAAGCAACTATAGTAATAA-AAAAAGC
*
8838893 AATTCCTTTACAAGCAACTATAGTAATAAAAAAAG
1 AATTCATTTACAAGCAACTATAGTAATAAAAAAAG
8838928 GAAGGGGGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
36 6 0.18
37 27 0.82
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.26
Consensus pattern (36 bp):
AATTCATTTACAAGCAACTATAGTAATAAAAAAAGC
Found at i:8841862 original size:25 final size:27
Alignment explanation
Indices: 8841834--8841897 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 27
8841824 TAATAATAAT
8841834 AATAATAATTAAACA-T-A-TAAAATTA
1 AATAATAATTAAACAGTGACTAAAA-TA
*
8841859 AATAATAACTAAACAGTGACTAAAATA
1 AATAATAATTAAACAGTGACTAAAATA
8841886 AATAA-AATTAAA
1 AATAATAATTAAA
8841898 ACTATAGTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 14 0.41
26 7 0.21
27 8 0.24
28 5 0.15
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (27 bp):
AATAATAATTAAACAGTGACTAAAATA
Done.