Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008620.1 Hibiscus syriacus cultivar Beakdansim tig00111582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13158977
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 44 of 64
Found at i:8841882 original size:28 final size:24
Alignment explanation
Indices: 8841826--8841890 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 24
8841816 CTAAATAATA
*
8841826 ATAATAAT-AATAATAATTAAACAT
1 ATAA-AATAAATAATAACTAAACAT
8841850 ATAAAATTAAATAATAACTAAACAGT
1 ATAAAA-TAAATAATAACTAAACA-T
8841876 GACTAAAATAAATAA
1 -A-TAAAATAAATAA
8841891 AATTAAAACT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
23 2 0.06
24 5 0.14
25 14 0.40
26 1 0.03
27 8 0.23
28 5 0.14
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.28
Consensus pattern (24 bp):
ATAAAATAAATAATAACTAAACAT
Found at i:8844026 original size:24 final size:23
Alignment explanation
Indices: 8843997--8844047 Score: 75
Period size: 24 Copynumber: 2.2 Consensus size: 23
8843987 ATAGATTATC
* *
8843997 TAATTTCATACTCTCTAAATTTT
1 TAATTTCACACCCTCTAAATTTT
8844020 ATAATTTCACACCCTCTAAATTTT
1 -TAATTTCACACCCTCTAAATTTT
8844044 TAAT
1 TAAT
8844048 ATAATTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (23 bp):
TAATTTCACACCCTCTAAATTTT
Found at i:8848357 original size:219 final size:219
Alignment explanation
Indices: 8847978--8848415 Score: 858
Period size: 219 Copynumber: 2.0 Consensus size: 219
8847968 ATTCAAAGTT
8847978 TTCAAAAATAATTCAAAGTCCATTTAACTTGAAATTGAACACAAAATGATTTTCTAGACTAGAAG
1 TTCAAAAATAATTCAAAGTCCATTTAACTTGAAATTGAACACAAAATGATTTTCTAGACTAGAAG
8848043 TACCGATACTATTCTTACAGTATCGATACCTCATTAACAATACTGATACTGTTCATATGGTACCG
66 TACCGATACTATTCTTACAGTATCGATACCTCATTAACAATACTGATACTGTTCATATGGTACCG
*
8848108 ATACCAAAAGTAAGGGGAGCATCACACTAGATAGTATCGATACTATCAGCATTGCTCAAATTCCA
131 ATACCAAAAGTAAGGGGAGCATCACACTAGATAGTATCGATACTATCAACATTGCTCAAATTCCA
8848173 GAATGCAGAAATAGTACCGATACC
196 GAATGCAGAAATAGTACCGATACC
8848197 TTCAAAAATAATTCAAAGTCCATTTAACTTGAAATTGAACACAAAATGATTTTCTAGACTAGAAG
1 TTCAAAAATAATTCAAAGTCCATTTAACTTGAAATTGAACACAAAATGATTTTCTAGACTAGAAG
8848262 TACCGATACTATTCTTACAGTATCGATACCTCATTAACAATACTGATACTGTTCATATGGTACCG
66 TACCGATACTATTCTTACAGTATCGATACCTCATTAACAATACTGATACTGTTCATATGGTACCG
8848327 ATACCAAAAGTAAGGGGAGCATCACACTAGATAGTATCGATACTATCAACATTGCTCAAATTCCA
131 ATACCAAAAGTAAGGGGAGCATCACACTAGATAGTATCGATACTATCAACATTGCTCAAATTCCA
*
8848392 GAATGTAGAAATAGTACCGATACC
196 GAATGCAGAAATAGTACCGATACC
8848416 CATAGGGGTA
Statistics
Matches: 217, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
219 217 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (219 bp):
TTCAAAAATAATTCAAAGTCCATTTAACTTGAAATTGAACACAAAATGATTTTCTAGACTAGAAG
TACCGATACTATTCTTACAGTATCGATACCTCATTAACAATACTGATACTGTTCATATGGTACCG
ATACCAAAAGTAAGGGGAGCATCACACTAGATAGTATCGATACTATCAACATTGCTCAAATTCCA
GAATGCAGAAATAGTACCGATACC
Found at i:8849475 original size:16 final size:16
Alignment explanation
Indices: 8849450--8849555 Score: 80
Period size: 16 Copynumber: 6.9 Consensus size: 16
8849440 TATTTTTGCT
8849450 TAAT-AATAATAATAA
1 TAATAAATAATAATAA
* *
8849465 TAGTAAATAATAATAC
1 TAATAAATAATAATAA
8849481 TAATAAATAAT-ATAA
1 TAATAAATAATAATAA
*
8849496 TAATAACACTACT-ATAA
1 TAATAA-A-TAATAATAA
**
8849513 TAAT-AATGCTAAT-A
1 TAATAAATAATAATAA
**
8849527 TAAT-TTTAATAATAA
1 TAATAAATAATAATAA
*
8849542 TAATAAGTAATAAT
1 TAATAAATAATAAT
8849556 GTTATTTAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 11
0.76 0.12 0.11
Matches are distributed among these distances:
14 13 0.18
15 20 0.27
16 29 0.40
17 11 0.15
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.35
Consensus pattern (16 bp):
TAATAAATAATAATAA
Found at i:8849528 original size:17 final size:17
Alignment explanation
Indices: 8849488--8849530 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
8849478 TACTAATAAA
8849488 TAATATAATAATAACAC
1 TAATATAATAATAACAC
* **
8849505 TACTATAATAATAATGC
1 TAATATAATAATAACAC
8849522 TAATATAAT
1 TAATATAAT
8849531 TTTAATAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.35
Consensus pattern (17 bp):
TAATATAATAATAACAC
Found at i:8849570 original size:3 final size:3
Alignment explanation
Indices: 8849450--8849555 Score: 83
Period size: 3 Copynumber: 35.3 Consensus size: 3
8849440 TATTTTTGCT
* *
8849450 TAA TAA TAA TAA TAA TAG TAAA TAA TAA TAC TAA TAAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA T-AA TAA TAA TAA
* * * ** **
8849496 TAA TAA CAC TAC T-A TAA TAA TAA TGC TAA T-A TAA TTT TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8849542 TAA TAA GTAA TAA T
1 TAA TAA -TAA TAA T
8849556 GTTATTTAAA
Statistics
Matches: 81, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
2 5 0.06
3 68 0.84
4 8 0.10
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8849590 original size:24 final size:24
Alignment explanation
Indices: 8849540--8849591 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
8849530 TTTTAATAAT
* * *
8849540 AATAATAAGTAATAATGTTATTTA
1 AATAATAAGTAATAAGGTTAGTAA
8849564 AATAAT-AGTAATAAGGTTGAGTAA
1 AATAATAAGTAATAAGGTT-AGTAA
8849588 AATA
1 AATA
8849592 TGGTGATTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35
Consensus pattern (24 bp):
AATAATAAGTAATAAGGTTAGTAA
Found at i:8851039 original size:3 final size:3
Alignment explanation
Indices: 8851033--8851090 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
8851023 AAATAATATT
8851033 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8851081 TAA TAA TAA T
1 TAA TAA TAA T
8851091 GTGGGTTGGG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8851404 original size:21 final size:21
Alignment explanation
Indices: 8851378--8851419 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
8851368 ATAAGTTCTT
8851378 CTCATT-ATGAACTTCTTCTCC
1 CTCATTGATGAA-TTCTTCTCC
8851399 CTCATTGGATGAATTCTTCTC
1 CTCATT-GATGAATTCTTCTC
8851420 ATTATGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.19, C:0.29, G:0.10, T:0.43
Consensus pattern (21 bp):
CTCATTGATGAATTCTTCTCC
Found at i:8851753 original size:118 final size:115
Alignment explanation
Indices: 8851622--8851845 Score: 261
Period size: 115 Copynumber: 1.9 Consensus size: 115
8851612 TTCTAGGTTG
* * * * * * *
8851622 AACAAGCTCTTCTCATTACGAGCTTCTTCTCCCTTGTTGAACAAGTTTTTCTTATTACGAACTCT
1 AACAAGCTATTCTCATTACGAACTTCTTCT-CCTCGTCGAACAAGTTCTTCTCATTACGAACCCT
** *
8851687 TCCACTTGGAAATGTTGATCCA-CCTCCTTGTGCGATGGATGTGTCGAGTTCTA
65 T-C-CTCAGAAATGTTGATCCATCAT-CTTGTGCGATGGATGTGTCGAGTTCTA
* * * * *
8851740 AACAAGTTATTCTCATTATGAACTTCTTCTCCTCGTCGGACGAGTTCTTCTCATTATGAACCCTT
1 AACAAGCTATTCTCATTACGAACTTCTTCTCCTCGTCGAACAAGTTCTTCTCATTACGAACCCTT
*
8851805 CCTCAGAAATGTTGATCCATCATCTTGTGCGTTGGATGTGT
66 CCTCAGAAATGTTGATCCATCATCTTGTGCGATGGATGTGT
8851846 TTAATCTTTG
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
115 33 0.37
116 3 0.03
117 27 0.30
118 26 0.29
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (115 bp):
AACAAGCTATTCTCATTACGAACTTCTTCTCCTCGTCGAACAAGTTCTTCTCATTACGAACCCTT
CCTCAGAAATGTTGATCCATCATCTTGTGCGATGGATGTGTCGAGTTCTA
Found at i:8852615 original size:111 final size:110
Alignment explanation
Indices: 8852298--8852598 Score: 448
Period size: 109 Copynumber: 2.7 Consensus size: 110
8852288 GATAAATCCA
* *
8852298 AAATTCATTGAAAATTTGGGAGTTTACAAAATTATGGCAACCACACAACATGAAAAGTAAAACCC
1 AAATTCATTGAAAATTTGGGAGTTTACAAAATTATGGCAATCACACAAGATGAAAAGTAAAACCC
* * *
8852363 TAAAAATAAAGATTGACACCCCAAGGATTCCC-AACAAGAGCGTTTG
66 TAAGAGTAAGGATTGACA-CCCAAGGA-TCCCTAACAAGAGCGTTTG
* *
8852409 AAATTCATTGAAAATTTGGGAG--TACAAAATTATGGCAATCACATAAGACGAAAAGTAAAACCC
1 AAATTCATTGAAAATTTGGGAGTTTACAAAATTATGGCAATCACACAAGATGAAAAGTAAAACCC
* *
8852472 TAAGAGTAAGGATTGACGGCCCAAGGATCCCTAGCAAGAGCGTTTG
66 TAAGAGTAAGGATTGAC-ACCCAAGGATCCCTAACAAGAGCGTTTG
8852518 AAATTCATTGAAAATTTGGGAGTTTACAAAATTATGGCAATCACACAAGATGAAAAAG-AAAACC
1 AAATTCATTGAAAATTTGGGAGTTTACAAAATTATGGCAATCACACAAGATG-AAAAGTAAAACC
*
8852582 CTAAGAGTAAGGGTTGA
65 CTAAGAGTAAGGATTGA
8852599 TTCCTAAATG
Statistics
Matches: 173, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
108 4 0.02
109 94 0.54
111 70 0.40
112 5 0.03
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (110 bp):
AAATTCATTGAAAATTTGGGAGTTTACAAAATTATGGCAATCACACAAGATGAAAAGTAAAACCC
TAAGAGTAAGGATTGACACCCAAGGATCCCTAACAAGAGCGTTTG
Found at i:8852833 original size:171 final size:171
Alignment explanation
Indices: 8852548--8852889 Score: 684
Period size: 171 Copynumber: 2.0 Consensus size: 171
8852538 AGTTTACAAA
8852548 ATTATGGCAATCACACAAGATGAAAAAGAAAACCCTAAGAGTAAGGGTTGATTCCTAAATGATCC
1 ATTATGGCAATCACACAAGATGAAAAAGAAAACCCTAAGAGTAAGGGTTGATTCCTAAATGATCC
8852613 CTAAAAATAGCATTTTTGAGTCAATCAACTTGGTGTAATCCTGATTACTGAGGTGTGCTTCTGTA
66 CTAAAAATAGCATTTTTGAGTCAATCAACTTGGTGTAATCCTGATTACTGAGGTGTGCTTCTGTA
8852678 TGAAGGATTTCAACATTGTAAAGAATTATGTAGATGTGAAG
131 TGAAGGATTTCAACATTGTAAAGAATTATGTAGATGTGAAG
8852719 ATTATGGCAATCACACAAGATGAAAAAGAAAACCCTAAGAGTAAGGGTTGATTCCTAAATGATCC
1 ATTATGGCAATCACACAAGATGAAAAAGAAAACCCTAAGAGTAAGGGTTGATTCCTAAATGATCC
8852784 CTAAAAATAGCATTTTTGAGTCAATCAACTTGGTGTAATCCTGATTACTGAGGTGTGCTTCTGTA
66 CTAAAAATAGCATTTTTGAGTCAATCAACTTGGTGTAATCCTGATTACTGAGGTGTGCTTCTGTA
8852849 TGAAGGATTTCAACATTGTAAAGAATTATGTAGATGTGAAG
131 TGAAGGATTTCAACATTGTAAAGAATTATGTAGATGTGAAG
8852890 CTTCTTCCGA
Statistics
Matches: 171, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
171 171 1.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.30
Consensus pattern (171 bp):
ATTATGGCAATCACACAAGATGAAAAAGAAAACCCTAAGAGTAAGGGTTGATTCCTAAATGATCC
CTAAAAATAGCATTTTTGAGTCAATCAACTTGGTGTAATCCTGATTACTGAGGTGTGCTTCTGTA
TGAAGGATTTCAACATTGTAAAGAATTATGTAGATGTGAAG
Found at i:8857559 original size:19 final size:19
Alignment explanation
Indices: 8857531--8857567 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8857521 TTTCCAATCC
*
8857531 ATATCAATTTGTTTAATTT
1 ATATCAATTTATTTAATTT
*
8857550 ATATCCATTTATTTAATT
1 ATATCAATTTATTTAATT
8857568 AGCACAACGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.57
Consensus pattern (19 bp):
ATATCAATTTATTTAATTT
Found at i:8857726 original size:24 final size:24
Alignment explanation
Indices: 8857694--8857749 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
8857684 GAAGTGCTAA
8857694 GTAG-ATTTATCCCAAAGGACCAC
1 GTAGAATTTATCCCAAAGGACCAC
*
8857717 GTAGAATTTATCCCGAAGGACCAC
1 GTAGAATTTATCCCAAAGGACCAC
*
8857741 ATAGAATTT
1 GTAGAATTT
8857750 GTTCTGAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 4 0.13
24 26 0.87
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (24 bp):
GTAGAATTTATCCCAAAGGACCAC
Found at i:8857952 original size:15 final size:15
Alignment explanation
Indices: 8857900--8857964 Score: 60
Period size: 15 Copynumber: 4.4 Consensus size: 15
8857890 TTCCCTTAAC
*
8857900 ACATATTCACATA-G
1 ACATATTCACATATA
* **
8857914 ACATTTTCACATAGG
1 ACATATTCACATATA
* *
8857929 ATATTTTCACATATA
1 ACATATTCACATATA
*
8857944 ACATATTCACCTATA
1 ACATATTCACATATA
8857959 ACATAT
1 ACATAT
8857965 ACTCATGTCA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
14 12 0.28
15 31 0.72
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.35
Consensus pattern (15 bp):
ACATATTCACATATA
Found at i:8863889 original size:24 final size:24
Alignment explanation
Indices: 8863857--8863903 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
8863847 TCATATAATT
*
8863857 TGCACCGAAGTGCCACGTAGATTA
1 TGCACCGAAGTGCCACATAGATTA
8863881 TGCACCGAAGTGCCACATAGATT
1 TGCACCGAAGTGCCACATAGATT
8863904 TATCCCGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (24 bp):
TGCACCGAAGTGCCACATAGATTA
Found at i:8863923 original size:47 final size:47
Alignment explanation
Indices: 8863872--8863972 Score: 109
Period size: 48 Copynumber: 2.1 Consensus size: 47
8863862 CGAAGTGCCA
*
8863872 CGTAGATTATG-CACCGAAGTG-CCACATAG-ATTTATCCCGAAGGACTG
1 CGTAGATT-TGTC-CCGAAG-GACCACATAGAATTTATCCCGAAGGACCG
* * *
8863919 CGTAGAATTTGTCTCGAAGGACCACGTAGAATTTGTCCCGAAGGACCG
1 CGTAG-ATTTGTCCCGAAGGACCACATAGAATTTATCCCGAAGGACCG
8863967 CGTAGA
1 CGTAGA
8863973 ACTCTCGACT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
46 1 0.02
47 20 0.43
48 25 0.54
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (47 bp):
CGTAGATTTGTCCCGAAGGACCACATAGAATTTATCCCGAAGGACCG
Found at i:8863936 original size:24 final size:24
Alignment explanation
Indices: 8863901--8863973 Score: 110
Period size: 24 Copynumber: 3.0 Consensus size: 24
8863891 TGCCACATAG
* *
8863901 ATTTATCCCGAAGGACTGCGTAGA
1 ATTTGTCCCGAAGGACCGCGTAGA
* *
8863925 ATTTGTCTCGAAGGACCACGTAGA
1 ATTTGTCCCGAAGGACCGCGTAGA
8863949 ATTTGTCCCGAAGGACCGCGTAGA
1 ATTTGTCCCGAAGGACCGCGTAGA
8863973 A
1 A
8863974 CTCTCGACTC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (24 bp):
ATTTGTCCCGAAGGACCGCGTAGA
Found at i:8864343 original size:14 final size:14
Alignment explanation
Indices: 8864324--8864369 Score: 74
Period size: 14 Copynumber: 3.3 Consensus size: 14
8864314 TATCATAATA
8864324 CAAATCATTTTGTT
1 CAAATCATTTTGTT
8864338 CAAATCATTTTGTT
1 CAAATCATTTTGTT
* *
8864352 CAAAACATTTTATT
1 CAAATCATTTTGTT
8864366 CAAA
1 CAAA
8864370 AGCATTTGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.43
Consensus pattern (14 bp):
CAAATCATTTTGTT
Found at i:8864370 original size:14 final size:14
Alignment explanation
Indices: 8864324--8864376 Score: 70
Period size: 14 Copynumber: 3.7 Consensus size: 14
8864314 TATCATAATA
*
8864324 CAAATCATTTTGTT
1 CAAAACATTTTGTT
*
8864338 CAAATCATTTTGTT
1 CAAAACATTTTGTT
*
8864352 CAAAACATTTTATT
1 CAAAACATTTTGTT
8864366 CAAAAGCATTT
1 CAAAA-CATTT
8864377 GAGGATGGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
14 31 0.86
15 5 0.14
ACGTcount: A:0.36, C:0.15, G:0.06, T:0.43
Consensus pattern (14 bp):
CAAAACATTTTGTT
Found at i:8865321 original size:3 final size:3
Alignment explanation
Indices: 8865307--8865364 Score: 82
Period size: 3 Copynumber: 19.0 Consensus size: 3
8865297 TTTCATTAAA
*
8865307 ATT ATT -TT ATT ATT ATT ATT ATT AAT ATT ATAT ATT ATAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT AT-T ATT ATT
8865353 ATT ATT ATT ATT
1 ATT ATT ATT ATT
8865365 TAAATAAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
2 2 0.04
3 42 0.84
4 6 0.12
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:8867032 original size:2 final size:2
Alignment explanation
Indices: 8867025--8867076 Score: 90
Period size: 2 Copynumber: 27.0 Consensus size: 2
8867015 TATGTTAAGA
8867025 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8867067 A- AT AT A- AT AT
1 AT AT AT AT AT AT
8867077 TTCTTTAAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 46 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8867616 original size:26 final size:27
Alignment explanation
Indices: 8867564--8867630 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 27
8867554 TAATTCTTTC
* *
8867564 TTTTCAAAATGTTTATATATACTTATTA
1 TTTTCATAATATTTATATATAC-TATTA
*
8867592 TTTTCATAATATTTATATGTA-TATTA
1 TTTTCATAATATTTATATATACTATTA
*
8867618 TTTT-TTAATATTT
1 TTTTCATAATATTT
8867631 TTACTTTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 8 0.23
26 9 0.26
28 18 0.51
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.60
Consensus pattern (27 bp):
TTTTCATAATATTTATATATACTATTA
Found at i:8872961 original size:28 final size:28
Alignment explanation
Indices: 8872903--8872987 Score: 86
Period size: 29 Copynumber: 3.0 Consensus size: 28
8872893 TTCATCCATC
*
8872903 AAAG-AAAGAAGAAGGAAAAA--AGAAA
1 AAAGAAAAGAAAAAGGAAAAATGAGAAA
*
8872928 ACAAAAAAGATGAAAAAGGAAAAATGAGAAA
1 A-AAGAAA-A-GAAAAAGGAAAAATGAGAAA
*
8872959 AAAGAAAAGAAAAAGGAAACATGGAGAAA
1 AAAGAAAAGAAAAAGGAAAAAT-GAGAAA
8872988 TTGAATCAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
25 1 0.02
26 2 0.04
27 2 0.04
28 14 0.29
29 19 0.39
30 5 0.10
31 6 0.12
ACGTcount: A:0.72, C:0.02, G:0.22, T:0.04
Consensus pattern (28 bp):
AAAGAAAAGAAAAAGGAAAAATGAGAAA
Found at i:8877553 original size:22 final size:22
Alignment explanation
Indices: 8877527--8877603 Score: 145
Period size: 22 Copynumber: 3.5 Consensus size: 22
8877517 ATCTACACTC
8877527 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
8877549 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
8877571 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
8877593 TTCAAAGATGA
1 TTCAAAGATGA
8877604 AAGAATTATT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 53 1.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:8878369 original size:76 final size:76
Alignment explanation
Indices: 8878270--8879054 Score: 1295
Period size: 76 Copynumber: 10.4 Consensus size: 76
8878260 CGATTTCCCA
* * *
8878270 CATCTATAAGTCCTGCAGTGCATGATATTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGAAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
8878335 AGCCTTAGGGT
66 AGCCTTAGGGT
8878346 CATCTGTAAGTCCTGAAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGAAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
8878411 AGCCTTA-GG-
66 AGCCTTAGGGT
8878420 ---CTGTAAGTCCTGCAA-TGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 CATCTGTAAGTCCTG-AAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
8878481 AAGCCTTAGGGT
65 AAGCCTTAGGGT
*
8878493 CATCTGTAAGTCCT-ACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 CATCTGTAAGTCCTGA-AGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
8878557 AAGCCTTAGGGT
65 AAGCCTTAGGGT
*
8878569 CATCTGTAAGTCCTGTAA-TGCATGATGTTTCCAAAAAGCCTTTGGGAGCTTTTTGATGTTTTCA
1 CATCTGTAAGTCCTG-AAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
8878633 AAGCCTTAGGGT
65 AAGCCTTAGGGT
8878645 CATCTGTAAGTCCT-ACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 CATCTGTAAGTCCTGA-AGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
8878709 AAGCCTTAGGGT
65 AAGCCTTAGGGT
* * *
8878721 CATCTGTAAGTCATGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTATCAA
1 CATCTGTAAGTCCTGAAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
8878786 AGCCTTAGGGT
66 AGCCTTAGGGT
*
8878797 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGAAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
8878862 AGCCTTAGGGT
66 AGCCTTAGGGT
* *
8878873 CATCTGTAAGTCCT-ACAGTGCATGATGTTTCCAAAAAGCCTTTGGGAGCTTTTTGATGTTTTTA
1 CATCTGTAAGTCCTGA-AGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
*
8878937 AAACCTTAGGGT
65 AAGCCTTAGGGT
8878949 CATCTGTAAGTCCT-ACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 CATCTGTAAGTCCTGA-AGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
*
8879013 AAACCTTAGGGT
65 AAGCCTTAGGGT
* **
8879025 CATCTGTAAGCCCTTCAGTGCATGATGTTT
1 CATCTGTAAGTCCTGAAGTGCATGATGTTT
8879055 TTTTAGGACC
Statistics
Matches: 674, Mismatches: 20, Indels: 30
0.93 0.03 0.04
Matches are distributed among these distances:
71 66 0.10
72 4 0.01
74 2 0.00
75 4 0.01
76 596 0.88
77 1 0.00
78 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTGAAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:8879223 original size:3 final size:3
Alignment explanation
Indices: 8879209--8879261 Score: 90
Period size: 3 Copynumber: 18.0 Consensus size: 3
8879199 TTTAATTAAA
*
8879209 ATT ATT -TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8879256 ATT ATT
1 ATT ATT
8879262 TAAATAAAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8892824 original size:3 final size:3
Alignment explanation
Indices: 8892816--8892858 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
8892806 CTTTGGGTTT
8892816 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
8892859 GTGGGTCGGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8893071 original size:104 final size:104
Alignment explanation
Indices: 8892925--8893135 Score: 291
Period size: 104 Copynumber: 2.0 Consensus size: 104
8892915 TCTATGATAT
* * * ** *
8892925 ATTTGAAAGGAATAAGTTCTTCTCATTATGAACTTTCTCCTTTGGGATGAGTTATTCTCATTA-A
1 ATTTGAAAGAAAGAAATTCTTCTCATTATGAACTTTAACCTTTGGG-TGAGTTATTATCATTATA
* *
8892989 GATCTCTTATGGAAATGCCAATCCACCT-CTTCTGTGATGG
65 -AACTCTTATGGAAATGCCAATCCACCTCCTTATGTGATGG
*
8893029 ATTTGAAAGAAAGAAATTCTTCTCATTATGAACTTTAACCTTTGGGTGTGTTATTATCATTATAA
1 ATTTGAAAGAAAGAAATTCTTCTCATTATGAACTTTAACCTTTGGGTGAGTTATTATCATTATAA
* *
8893094 ACTCTTATGGAAATGTCGATCCACCTCCTTATGTGATGG
66 ACTCTTATGGAAATGCCAATCCACCTCCTTATGTGATGG
8893133 ATT
1 ATT
8893136 AAAGTTATTA
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
103 38 0.40
104 56 0.60
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.39
Consensus pattern (104 bp):
ATTTGAAAGAAAGAAATTCTTCTCATTATGAACTTTAACCTTTGGGTGAGTTATTATCATTATAA
ACTCTTATGGAAATGCCAATCCACCTCCTTATGTGATGG
Found at i:8893678 original size:2 final size:2
Alignment explanation
Indices: 8893671--8893751 Score: 162
Period size: 2 Copynumber: 40.5 Consensus size: 2
8893661 ATAAGATGTT
8893671 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8893713 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8893752 GTAAAAAATG
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 79 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8897652 original size:25 final size:25
Alignment explanation
Indices: 8897624--8897672 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8897614 TTTAAAAAAA
* *
8897624 TAAAAGAAAAAAATATTACAAATTT
1 TAAAAGAAAAAAATAATAAAAATTT
**
8897649 TAAAAGTGAAAAATAATAAAAATT
1 TAAAAGAAAAAAATAATAAAAATT
8897673 AATTAAACTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (25 bp):
TAAAAGAAAAAAATAATAAAAATTT
Found at i:8897735 original size:5 final size:5
Alignment explanation
Indices: 8897725--8897750 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8897715 AATGTACTCG
8897725 ACATT ACATT ACATT ACATT ACATT A
1 ACATT ACATT ACATT ACATT ACATT A
8897751 GAAGAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.38
Consensus pattern (5 bp):
ACATT
Found at i:8898032 original size:82 final size:82
Alignment explanation
Indices: 8897911--8898536 Score: 788
Period size: 82 Copynumber: 7.6 Consensus size: 82
8897901 TTTCTATAAT
* * * * *
8897911 TTGATATGATATGTAAATGAAAAGCAAAGGACATAAATAGTGTAGATTCTCTGATTCTCTAAATT
1 TTGATGTGATATGTCAATGAAAAGCAAAGGACGTGAATAGTATAGATTCTCTGATTCTCTAAATT
*
8897976 ATTTTAGTTTATCTGAG
66 ATTTCAGTTTATCTGAG
* * * * *
8897993 TTGATGAGATATGTCAATGAAAAACAAATGATGTGAATAGTGTAGATTCTAC-GATTCTCTAAAT
1 TTGATGTGATATGTCAATGAAAAGCAAAGGACGTGAATAGTATAGATTCT-CTGATTCTCTAAAT
8898057 TATTTCAGTTTATCTGAG
65 TATTTCAGTTTATCTGAG
* * * ** *
8898075 TTGATGTGATATATCAATGAAAAACAATGGACGTGAATAGTATAGATTCTCCAATTCTTTAAATT
1 TTGATGTGATATGTCAATGAAAAGCAAAGGACGTGAATAGTATAGATTCTCTGATTCTCTAAATT
8898140 ATTTCAGTTTATCTGAG
66 ATTTCAGTTTATCTGAG
* * * *
8898157 TTGATGTGATATGTAAATGAAAAGTAAATGATGTGAATAGTATAGATTCTCTGATTCTCTAAATT
1 TTGATGTGATATGTCAATGAAAAGCAAAGGACGTGAATAGTATAGATTCTCTGATTCTCTAAATT
* * *
8898222 ATATCAATTTATATGAG
66 ATTTCAGTTTATCTGAG
* * * * * * * * *
8898239 TTGTTTTGATATGTTAGTGAAAACCAAAGGACGTTAATAGTGTAAATTCTCAGATTCTCTAAATT
1 TTGATGTGATATGTCAATGAAAAGCAAAGGACGTGAATAGTATAGATTCTCTGATTCTCTAAATT
* *
8898304 GTTTCAGTTTATATGAG
66 ATTTCAGTTTATCTGAG
* * * * *
8898321 TTGATGTAATATGTCAATGAAAAGCAAAGGACATGAATAATATAGATTTTCTAATTCTCTAAATT
1 TTGATGTGATATGTCAATGAAAAGCAAAGGACGTGAATAGTATAGATTCTCTGATTCTCTAAATT
8898386 ATTTCAGTTTATCTGAG
66 ATTTCAGTTTATCTGAG
* * * *
8898403 TTGATGTGATATGTCAATGAAAAGCAAAGGACATTAATAGTTTAGATTCTCTCATTCTCTAAATT
1 TTGATGTGATATGTCAATGAAAAGCAAAGGACGTGAATAGTATAGATTCTCTGATTCTCTAAATT
8898468 ATTTC-GATTTATCTGAG
66 ATTTCAG-TTTATCTGAG
* * * *
8898485 TTGTTGTGATATGTCAATGAAAAGAAAAGGACGTGAATAGTTTAGACTCTCT
1 TTGATGTGATATGTCAATGAAAAGCAAAGGACGTGAATAGTATAGATTCTCT
8898537 ACAATATTTA
Statistics
Matches: 469, Mismatches: 72, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
81 2 0.00
82 466 0.99
83 1 0.00
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (82 bp):
TTGATGTGATATGTCAATGAAAAGCAAAGGACGTGAATAGTATAGATTCTCTGATTCTCTAAATT
ATTTCAGTTTATCTGAG
Found at i:8907852 original size:18 final size:18
Alignment explanation
Indices: 8907829--8907897 Score: 102
Period size: 18 Copynumber: 3.8 Consensus size: 18
8907819 AATATGTATA
8907829 TGGTCCTTCGAGACATAG
1 TGGTCCTTCGAGACATAG
8907847 TGGTCCTTCGAGACATAG
1 TGGTCCTTCGAGACATAG
* *
8907865 TGGTCCTTCGGGATATAG
1 TGGTCCTTCGAGACATAG
* *
8907883 TTGTCCTTCGGGACA
1 TGGTCCTTCGAGACA
8907898 AATCCTACGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (18 bp):
TGGTCCTTCGAGACATAG
Found at i:8908187 original size:9 final size:9
Alignment explanation
Indices: 8908146--8908188 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
8908136 GAAATATGAC
8908146 TGATAATAA
1 TGATAATAA
*
8908155 TGCTAATAA
1 TGATAATAA
*
8908164 TGATAAGAA
1 TGATAATAA
*
8908173 TAATAATAA
1 TGATAATAA
*
8908182 GGATAAT
1 TGATAAT
8908189 GAAATGATAT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.53, C:0.02, G:0.14, T:0.30
Consensus pattern (9 bp):
TGATAATAA
Found at i:8911177 original size:29 final size:30
Alignment explanation
Indices: 8911135--8911256 Score: 80
Period size: 29 Copynumber: 4.3 Consensus size: 30
8911125 TTAAATATTT
* *
8911135 TTTTATAAA--TTAATTTATGGACAAA-GA
1 TTTTATAAATTTTAATTAATGGACAAATCA
*
8911162 TTTTATAAATTTTAA-TAATGGACAAATCT
1 TTTTATAAATTTTAATTAATGGACAAATCA
* * *
8911191 TTTTATAAATTATAA-TAGA-AGAAAAATC-
1 TTTTATAAATTTTAATTA-ATGGACAAATCA
** * *
8911219 TTCTTATAAATTACAA-TAAAGGACAAATCT
1 TT-TTATAAATTTTAATTAATGGACAAATCA
8911249 TTTTATAA
1 TTTTATAA
8911257 TTTAAAATAA
Statistics
Matches: 79, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
27 9 0.11
28 13 0.16
29 54 0.68
30 3 0.04
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (30 bp):
TTTTATAAATTTTAATTAATGGACAAATCA
Found at i:8911229 original size:58 final size:58
Alignment explanation
Indices: 8911164--8911324 Score: 200
Period size: 58 Copynumber: 2.8 Consensus size: 58
8911154 GACAAAGATT
** * *
8911164 TTATAAATTTTAATAATGGACAAATCTTTTTATAAATTATAATAGAAG-AAAAATCTTC
1 TTATAAATTACAATAATGGACAAATCTTTTTATAAATTAAAATA-AAGAAAAAATCGTC
* * *
8911222 TTATAAATTACAATAAAGGACAAATCTTTTTATAATTTAAAATAAAGAAAAAATCGTG
1 TTATAAATTACAATAATGGACAAATCTTTTTATAAATTAAAATAAAGAAAAAATCGTC
* * *
8911280 TTATAAATTACAATAAT-GACATATACTTTTTACAAATTACAATAA
1 TTATAAATTACAATAATGGACAAAT-CTTTTTATAAATTAAAATAA
8911325 CAACTCATAT
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
57 9 0.10
58 80 0.90
ACGTcount: A:0.49, C:0.08, G:0.06, T:0.37
Consensus pattern (58 bp):
TTATAAATTACAATAATGGACAAATCTTTTTATAAATTAAAATAAAGAAAAAATCGTC
Found at i:8911265 original size:29 final size:29
Alignment explanation
Indices: 8911162--8911324 Score: 150
Period size: 29 Copynumber: 5.6 Consensus size: 29
8911152 TGGACAAAGA
** * *
8911162 TTTTATAAATTTTAATAATGGACAAATCT
1 TTTTATAAATTACAATAAAGGAAAAATCT
*
8911191 TTTTATAAATTATAATAGAA-GAAAAATCT
1 TTTTATAAATTACAATA-AAGGAAAAATCT
* *
8911220 TCTTATAAATTACAATAAAGGACAAATCT
1 TTTTATAAATTACAATAAAGGAAAAATCT
* * * *
8911249 TTTTATAATTTAAAATAAAGAAAAAATCG
1 TTTTATAAATTACAATAAAGGAAAAATCT
* * * *
8911278 TGTTATAAATTACAAT-AATGACATATACT
1 TTTTATAAATTACAATAAAGGAAAAAT-CT
*
8911307 TTTTACAAATTACAATAA
1 TTTTATAAATTACAATAA
8911325 CAACTCATAT
Statistics
Matches: 108, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
28 8 0.07
29 98 0.91
30 2 0.02
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.37
Consensus pattern (29 bp):
TTTTATAAATTACAATAAAGGAAAAATCT
Found at i:8911346 original size:28 final size:29
Alignment explanation
Indices: 8911286--8911378 Score: 111
Period size: 28 Copynumber: 3.2 Consensus size: 29
8911276 CGTGTTATAA
** *
8911286 ATTACAATAATGACATATACTTTTTACAA-
1 ATTACAATAACAACCTATA-TTTTTACAAT
8911315 ATTACAATAACAA-CTCATATTTTTA-AAT
1 ATTACAATAACAACCT-ATATTTTTACAAT
8911343 ATTACAATAACAACCTATATTTTTACAAT
1 ATTACAATAACAACCTATATTTTTACAAT
8911372 CATTACA
1 -ATTACA
8911379 TTTTGATCCT
Statistics
Matches: 56, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
27 2 0.04
28 29 0.52
29 19 0.34
30 6 0.11
ACGTcount: A:0.45, C:0.16, G:0.01, T:0.38
Consensus pattern (29 bp):
ATTACAATAACAACCTATATTTTTACAAT
Found at i:8918098 original size:157 final size:157
Alignment explanation
Indices: 8917812--8918126 Score: 630
Period size: 157 Copynumber: 2.0 Consensus size: 157
8917802 ATGACATGCA
8917812 ATAAGAATTAAAAATTTAAAAAAAGTTAGTGCAAAAGATATTAATTCTAAAATAAACAGTTCAAT
1 ATAAGAATTAAAAATTTAAAAAAAGTTAGTGCAAAAGATATTAATTCTAAAATAAACAGTTCAAT
8917877 CAAAAAGTTTTCAACAACACACAATGCCTAAGCACTTAGGGAAATAAAATACATCAACAGAGAAT
66 CAAAAAGTTTTCAACAACACACAATGCCTAAGCACTTAGGGAAATAAAATACATCAACAGAGAAT
8917942 TGTATATAATATCTAGCCCTATCTCCT
131 TGTATATAATATCTAGCCCTATCTCCT
8917969 ATAAGAATTAAAAATTTAAAAAAAGTTAGTGCAAAAGATATTAATTCTAAAATAAACAGTTCAAT
1 ATAAGAATTAAAAATTTAAAAAAAGTTAGTGCAAAAGATATTAATTCTAAAATAAACAGTTCAAT
8918034 CAAAAAGTTTTCAACAACACACAATGCCTAAGCACTTAGGGAAATAAAATACATCAACAGAGAAT
66 CAAAAAGTTTTCAACAACACACAATGCCTAAGCACTTAGGGAAATAAAATACATCAACAGAGAAT
8918099 TGTATATAATATCTAGCCCTATCTCCT
131 TGTATATAATATCTAGCCCTATCTCCT
8918126 A
1 A
8918127 ACCTCTCGAT
Statistics
Matches: 158, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
157 158 1.00
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.27
Consensus pattern (157 bp):
ATAAGAATTAAAAATTTAAAAAAAGTTAGTGCAAAAGATATTAATTCTAAAATAAACAGTTCAAT
CAAAAAGTTTTCAACAACACACAATGCCTAAGCACTTAGGGAAATAAAATACATCAACAGAGAAT
TGTATATAATATCTAGCCCTATCTCCT
Found at i:8923629 original size:2 final size:2
Alignment explanation
Indices: 8923622--8923646 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8923612 TTTATTTGTA
8923622 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8923647 ATAGTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8924444 original size:21 final size:21
Alignment explanation
Indices: 8924418--8924460 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
8924408 AATGACTGGT
8924418 TTTGATGGCTTTTGTTTCACA
1 TTTGATGGCTTTTGTTTCACA
*
8924439 TTTGATGGCTTTTGTTTGACA
1 TTTGATGGCTTTTGTTTCACA
8924460 T
1 T
8924461 GGTTCATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.12, G:0.21, T:0.53
Consensus pattern (21 bp):
TTTGATGGCTTTTGTTTCACA
Found at i:8925818 original size:16 final size:16
Alignment explanation
Indices: 8925797--8925828 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8925787 TGTATCATCT
8925797 TTGTCTTCTTTTACTG
1 TTGTCTTCTTTTACTG
8925813 TTGTCTTCTTTTACTG
1 TTGTCTTCTTTTACTG
8925829 CCTTTGTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.19, G:0.12, T:0.62
Consensus pattern (16 bp):
TTGTCTTCTTTTACTG
Found at i:8926110 original size:13 final size:13
Alignment explanation
Indices: 8926092--8926127 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
8926082 TACATACGCG
8926092 CATATGAAGACTA
1 CATATGAAGACTA
*
8926105 CATATGAAGACTG
1 CATATGAAGACTA
8926118 CATATGAAGA
1 CATATGAAGA
8926128 TTGTTCAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.22
Consensus pattern (13 bp):
CATATGAAGACTA
Found at i:8928006 original size:47 final size:45
Alignment explanation
Indices: 8927948--8928051 Score: 167
Period size: 47 Copynumber: 2.3 Consensus size: 45
8927938 GTTAACAAAA
*
8927948 AAACGCCGCAATAGGTACTGATATTTAGCGGCGTGTGTTTGTTAAAC
1 AAACGCCGCAATAGGTACTGATATTTAGCGGCGT-T-TTTCTTAAAC
8927995 AAACGCCGCAATAGGTACTGATATTTAGCGGCGTTTTTCTTAAAC
1 AAACGCCGCAATAGGTACTGATATTTAGCGGCGTTTTTCTTAAAC
8928040 --ACGCCGCAATAG
1 AAACGCCGCAATAG
8928052 CTGTCAATAT
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
43 12 0.21
45 9 0.16
46 1 0.02
47 34 0.61
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (45 bp):
AAACGCCGCAATAGGTACTGATATTTAGCGGCGTTTTTCTTAAAC
Found at i:8928062 original size:43 final size:44
Alignment explanation
Indices: 8927949--8928075 Score: 152
Period size: 47 Copynumber: 2.8 Consensus size: 44
8927939 TTAACAAAAA
* *
8927949 AACGCCGCAATAGGTACTGATATTTAGCGGCGTGTGTTTGTTAAAC
1 AACGCCGCAATAGGTACTAATATTTAGCGGCGT-T-TTTCTTAAAC
*
8927995 AAACGCCGCAATAGGTACTGATATTTAGCGGCGTTTTTCTTAAAC
1 -AACGCCGCAATAGGTACTAATATTTAGCGGCGTTTTTCTTAAAC
*
8928040 -ACGCCGCAATAGCTGT-C-AATATTTAGCGGCATTTTT
1 AACGCCGCAATAG--GTACTAATATTTAGCGGCGTTTTT
8928076 ATCACAAATG
Statistics
Matches: 75, Mismatches: 3, Indels: 8
0.87 0.03 0.09
Matches are distributed among these distances:
43 29 0.39
44 1 0.01
45 11 0.15
46 1 0.01
47 33 0.44
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (44 bp):
AACGCCGCAATAGGTACTAATATTTAGCGGCGTTTTTCTTAAAC
Found at i:8928393 original size:43 final size:43
Alignment explanation
Indices: 8928346--8928519 Score: 136
Period size: 43 Copynumber: 4.1 Consensus size: 43
8928336 TTGAGTTATA
* *
8928346 TAGCGGCATTTGAAAG-AAGAAACGTCGCTAATTCTCTTATTTT
1 TAGCGGCATTT-AAAGCAACAAACGCCGCTAATTCTCTTATTTT
*** *
8928389 TAGCGGCATTTTTGGCCACAAACGCCGCTAATTCTCTTATTTT
1 TAGCGGCATTTAAAGCAACAAACGCCGCTAATTCTCTTATTTT
* ** *** * * * *
8928432 TAGTGGTGTTTTTGGCCATAAACGCCGCTAATTCTCTTGTTTA
1 TAGCGGCATTTAAAGCAACAAACGCCGCTAATTCTCTTATTTT
* * * * *
8928475 TAGTGGCATTT-TAGCCACAAACGCCGCTAATTTTCTTATCTT
1 TAGCGGCATTTAAAGCAACAAACGCCGCTAATTCTCTTATTTT
8928517 TAG
1 TAG
8928520 TGGCGTTTTT
Statistics
Matches: 110, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
42 29 0.26
43 81 0.74
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.38
Consensus pattern (43 bp):
TAGCGGCATTTAAAGCAACAAACGCCGCTAATTCTCTTATTTT
Found at i:8928548 original size:43 final size:43
Alignment explanation
Indices: 8928365--8928570 Score: 252
Period size: 43 Copynumber: 4.8 Consensus size: 43
8928355 TTGAAAGAAG
* * * *
8928365 AAACGTCGCTAATTCTCTTATTTTTAGCGGCATTTTTGGCCAC
1 AAACGCCGCTAATTCTCTTATTTTTAGTGGCGTTTTTGACCAC
* * *
8928408 AAACGCCGCTAATTCTCTTATTTTTAGTGGTGTTTTTGGCCAT
1 AAACGCCGCTAATTCTCTTATTTTTAGTGGCGTTTTTGACCAC
* * * *
8928451 AAACGCCGCTAATTCTCTTGTTTATAGTGGCATTTTAG-CCAC
1 AAACGCCGCTAATTCTCTTATTTTTAGTGGCGTTTTTGACCAC
* * *
8928493 AAACGCCGCTAATTTTCTTATCTTTAGTGGCGTTTTTTACCAC
1 AAACGCCGCTAATTCTCTTATTTTTAGTGGCGTTTTTGACCAC
* * *
8928536 AAACGACGCTAATTTTATTATTTTTAGTGGCGTTT
1 AAACGCCGCTAATTCTCTTATTTTTAGTGGCGTTT
8928571 GTAATACAAA
Statistics
Matches: 141, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
42 34 0.24
43 107 0.76
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (43 bp):
AAACGCCGCTAATTCTCTTATTTTTAGTGGCGTTTTTGACCAC
Found at i:8928564 original size:85 final size:86
Alignment explanation
Indices: 8928365--8928566 Score: 271
Period size: 85 Copynumber: 2.4 Consensus size: 86
8928355 TTGAAAGAAG
* * * *
8928365 AAACGTCGCTAATTCTCTTATTTTTAGCGGCATTTTTGGCCACAAACGCCGCTAATTCTCTTATT
1 AAACGACGCTAATTCTCTTATTTTTAGTGGCATTTTTAGCCACAAACGCCGCTAATTCTCTTATC
* * *
8928430 TTTAGTGGTGTTTTTGGCCAT
66 TTTAGTGGCGTTTTTGACCAC
* * * *
8928451 AAACGCCGCTAATTCTCTTGTTTATAGTGGCA-TTTTAGCCACAAACGCCGCTAATTTTCTTATC
1 AAACGACGCTAATTCTCTTATTTTTAGTGGCATTTTTAGCCACAAACGCCGCTAATTCTCTTATC
*
8928515 TTTAGTGGCGTTTTTTACCAC
66 TTTAGTGGCGTTTTTGACCAC
* *
8928536 AAACGACGCTAATTTTATTATTTTTAGTGGC
1 AAACGACGCTAATTCTCTTATTTTTAGTGGC
8928567 GTTTGTAATA
Statistics
Matches: 100, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
85 72 0.72
86 28 0.28
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (86 bp):
AAACGACGCTAATTCTCTTATTTTTAGTGGCATTTTTAGCCACAAACGCCGCTAATTCTCTTATC
TTTAGTGGCGTTTTTGACCAC
Found at i:8928580 original size:85 final size:85
Alignment explanation
Indices: 8928365--8928589 Score: 236
Period size: 85 Copynumber: 2.6 Consensus size: 85
8928355 TTGAAAGAAG
* * * * * * *
8928365 AAACGTCGCTAATTCTCTTATTTTTAGCGGCATTTTTGGCCACAAACGCCGCTAATTCTCTTATT
1 AAACGACGCTAATTCTATTATTTATAGTGGCA-TTTTAGACACAAACGCCGCTAATTCTCTTATC
* * *
8928430 TTTAGTGGTGTTTTTGGCCAT
65 TTTAGTGGCGTTTTTGACCAC
* * * * *
8928451 AAACGCCGCTAATTCTCTTGTTTATAGTGGCATTTTAGCCACAAACGCCGCTAATTTTCTTATCT
1 AAACGACGCTAATTCTATTATTTATAGTGGCATTTTAGACACAAACGCCGCTAATTCTCTTATCT
*
8928516 TTAGTGGCGTTTTTTACCAC
66 TTAGTGGCGTTTTTGACCAC
* * * *
8928536 AAACGACGCTAATTTTATTATTTTTAGTGGCGTTTGTA-ATACAAAACGCCGCTA
1 AAACGACGCTAATTCTATTATTTATAGTGGCATTT-TAGACAC-AAACGCCGCTA
8928590 TATATTATGA
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
85 77 0.65
86 41 0.35
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (85 bp):
AAACGACGCTAATTCTATTATTTATAGTGGCATTTTAGACACAAACGCCGCTAATTCTCTTATCT
TTAGTGGCGTTTTTGACCAC
Found at i:8928583 original size:43 final size:43
Alignment explanation
Indices: 8928365--8928632 Score: 206
Period size: 43 Copynumber: 6.3 Consensus size: 43
8928355 TTGAAAGAAG
* * * * * *
8928365 AAACGTCGCTAATTCTCTTATTTTTAGCGGCATTTT-TGGCCAC
1 AAACGCCGCTAATTTTATTATTTTTAGTGGCGTTTTAT-ACCAC
* * * * *
8928408 AAACGCCGCTAATTCTCTTATTTTTAGTGGTGTTTT-TGGCCAT
1 AAACGCCGCTAATTTTATTATTTTTAGTGGCGTTTTAT-ACCAC
* * * * * *
8928451 AAACGCCGCTAATTCTCTTGTTTATAGTGGCATTTTA-GCCAC
1 AAACGCCGCTAATTTTATTATTTTTAGTGGCGTTTTATACCAC
* * *
8928493 AAACGCCGCTAATTTTCTTATCTTTAGTGGCGTTTTTTACCAC
1 AAACGCCGCTAATTTTATTATTTTTAGTGGCGTTTTATACCAC
*
8928536 AAACGACGCTAATTTTATTATTTTTAGTGGCGTTTGTAATA-CA-
1 AAACGCCGCTAATTTTATTATTTTTAGTGGCGTTT-T-ATACCAC
* * * * * *
8928579 AAACGCCGCTATATATTATGATTTGTAGTAGCATTTT-TACGAC
1 AAACGCCGCTA-ATTTTATTATTTTTAGTGGCGTTTTATACCAC
8928622 AAACGCCGCTA
1 AAACGCCGCTA
8928633 TTTGCAAAAG
Statistics
Matches: 190, Mismatches: 28, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.01
42 36 0.19
43 128 0.67
44 22 0.12
45 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (43 bp):
AAACGCCGCTAATTTTATTATTTTTAGTGGCGTTTTATACCAC
Found at i:8931276 original size:36 final size:36
Alignment explanation
Indices: 8931228--8931315 Score: 133
Period size: 36 Copynumber: 2.5 Consensus size: 36
8931218 ATAAGTGAAT
* * *
8931228 AATG-TAACTAAATTCCACTTGAACATCAGTAGTAG
1 AATGTTAATTAAATTCCACTTGAACAGCAGCAGTAG
8931263 AATGTTAATTAAATTCCACTTGAACAGCAGCAGTAG
1 AATGTTAATTAAATTCCACTTGAACAGCAGCAGTAG
*
8931299 AATGTTGATTAAATTCC
1 AATGTTAATTAAATTCC
8931316 CAACCGTTCA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
35 4 0.08
36 44 0.92
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31
Consensus pattern (36 bp):
AATGTTAATTAAATTCCACTTGAACAGCAGCAGTAG
Found at i:8933908 original size:41 final size:41
Alignment explanation
Indices: 8933826--8934209 Score: 461
Period size: 41 Copynumber: 9.4 Consensus size: 41
8933816 TTTAAAAAAC
* * *
8933826 AAACGCCATTAAAGTACGAGTC--TAGCAGCATTTGTATAA
1 AAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAA
* * *
8933865 AAATGCCACTAATGTACGAGTCTATAGCGGCGTTTGTACAA
1 AAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAA
* * * *
8933906 AAACGCCACTAAAGTACAAGCCTATAGCAGCGTTTGTAAACA
1 AAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATA-A
* *
8933948 CAAACGCCACAAAATTACGA-TCTATAGCGGCGTTTGTATAA
1 -AAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAA
* *
8933989 AAACGCCGCTAAAATACGAGTCTATAGCGGCGTTTGTATAA
1 AAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAA
* * *
8934030 AAACGCCACTAAAGTACTACTCTATCGCGGCGTTTTGTATAA
1 AAACGCCACTAAAGTACGAGTCTATAGCGGCG-TTTGTATAA
8934072 AAACGCCACTAAAGT-CGAGTCTATAGCGGCGTTTGTATAA
1 AAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAA
* * * * * *
8934112 AAACGCTACTAAATTACTACTCTATCGCGGCGTTTTATATAA
1 AAACGCCACTAAAGTACGAGTCTATAGCGGCG-TTTGTATAA
* *
8934154 AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTATATAA
1 AAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAA
* *
8934195 AAACACCGCTAAAGT
1 AAACGCCACTAAAGT
8934210 TACCATTTTG
Statistics
Matches: 294, Mismatches: 43, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
39 19 0.06
40 38 0.13
41 144 0.49
42 77 0.26
43 16 0.05
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (41 bp):
AAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAA
Found at i:8933983 original size:83 final size:83
Alignment explanation
Indices: 8933826--8934212 Score: 464
Period size: 83 Copynumber: 4.7 Consensus size: 83
8933816 TTTAAAAAAC
* * * * * *
8933826 AAACGCCATTAAAGTACGAGTC--TAGCAGCATTTGTATAAAAATGCCACT-AATGTACGAGTCT
1 AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAT-TACGACTCT
*
8933888 ATAGCGGCG-TTTGTACAA
65 ATAGCGGCGTTTTGTATAA
* * * * * *
8933906 AAACGCCACTAAAGTACAAGCCTATAGCAGCGTTTGTAAACACAAACGCCACAAAATTACGA-TC
1 AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTGTATA-A-AAACGCCACTAAATTACGACTC
8933970 TATAGCGGCG-TTTGTATAA
64 TATAGCGGCGTTTTGTATAA
* * *
8933989 AAACGCCGCTAAAATACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTCTA
1 AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAATTACGACTCTA
*
8934054 TCGCGGCGTTTTGTATAA
66 TAGCGGCGTTTTGTATAA
* * *
8934072 AAACGCCACTAAAGT-CGAGTCTATAGCGGCGTTTGTATAAAAACGCTACTAAATTACTACTCTA
1 AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAATTACGACTCTA
* *
8934136 TCGCGGCGTTTTATATAA
66 TAGCGGCGTTTTGTATAA
* * *
8934154 AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTATATAAAAACACCGCTAAAGTTAC
1 AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAA-TTAC
8934213 CATTTTGTTG
Statistics
Matches: 270, Mismatches: 28, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
80 19 0.07
81 16 0.06
82 104 0.39
83 111 0.41
84 17 0.06
85 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (83 bp):
AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAATTACGACTCTA
TAGCGGCGTTTTGTATAA
Found at i:8934032 original size:124 final size:122
Alignment explanation
Indices: 8933821--8934198 Score: 422
Period size: 124 Copynumber: 3.1 Consensus size: 122
8933811 GACGTTTTAA
** * * * **
8933821 AAAACAAACGCCATTAAAGTACGAGTC--TAGCAGCATTTGTATAAAAATGCCACTAATGTACGA
1 AAAA-AAACGCCACAAAAGT-CGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAATACGA
* *
8933884 GTCTATAGCGGCGTTTGTACAAAAACGCCACTAAAGTACAAGCCTATAGCAGCGTTTGT
64 GTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAGTACAAGCCTATAGCGGCGTTTGT
* *
8933943 AAACACAAACGCCACAAAATTACGA-TCTATAGCGGCGTTTGTATAAAAACGCCGCTAAAATACG
1 AAA-A-AAACGCCACAAAAGT-CGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAATACG
* *
8934007 AGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAGTACTA-CTCTATCGCGGCGTTTTGT
63 AGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAGTACAAGC-CTATAGCGGCG-TTTGT
* * * * * *
8934068 ATAAAAACGCCACTAAAGTCGAGTCTATAGCGGCGTTTGTATAAAAACGCTACTAAATTACTACT
1 AAAAAAACGCCACAAAAGTCGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAATACGAGT
* * * * * *
8934133 CTATCGCGGCGTTTTATATAAAAACGCCACTAAAATACGAGTCTATAGCGGCGTTTAT
66 CTATAGCGGCG-TTTGTATAAAAACGCCACTAAAGTACAAGCCTATAGCGGCGTTTGT
*
8934191 ATAAAAAC
1 AAAAAAAC
8934199 ACCGCTAAAG
Statistics
Matches: 220, Mismatches: 28, Indels: 15
0.84 0.11 0.06
Matches are distributed among these distances:
122 8 0.04
123 91 0.41
124 114 0.52
125 7 0.03
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (122 bp):
AAAAAAACGCCACAAAAGTCGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAATACGAGT
CTATAGCGGCGTTTGTATAAAAACGCCACTAAAGTACAAGCCTATAGCGGCGTTTGT
Found at i:8934098 original size:165 final size:165
Alignment explanation
Indices: 8933826--8934209 Score: 499
Period size: 165 Copynumber: 2.3 Consensus size: 165
8933816 TTTAAAAAAC
* * * * * * *
8933826 AAACGCCATTAAAGTACGAGTC--TAGCAGCATTTGTATAAAAATGCCACTAATGTACGAGTCTA
1 AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAGTACGACTCTA
8933889 TAGCGGCGTTTGTACAAAAACGCCACTAAAGTACAAGCCTATAGCAGCGTTTGTAAACACAAACG
66 TAGCGGCGTTTGTACAAAAACGCCACTAAAGTACAAGCCTATAGCAGCGTTTGTAAA-A-AAACG
*
8933954 CCACAAAATTACGA-TCTATAGCGGCG-TTTGTATAA
129 CCACAAAATTACGACTCTATAGCGGCGTTTTATATAA
* *
8933989 AAACGCCGCTAAAATACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTCTA
1 AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAGTACGACTCTA
* * * * * *
8934054 TCGCGGCGTTTTGTATAAAAACGCCACTAAAGT-CGAGTCTATAGCGGCGTTTGTATAAAAACGC
66 TAGCGGCG-TTTGTACAAAAACGCCACTAAAGTACAAGCCTATAGCAGCGTTTGTAAAAAAACGC
* * * *
8934118 TACTAAATTACTACTCTATCGCGGCGTTTTATATAA
130 CACAAAATTACGACTCTATAGCGGCGTTTTATATAA
* * *
8934154 AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTATATAAAAACACCGCTAAAGT
1 AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAGT
8934210 TACCATTTTG
Statistics
Matches: 192, Mismatches: 24, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
163 35 0.18
164 12 0.06
165 122 0.64
166 23 0.12
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (165 bp):
AAACGCCACTAAAATACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTAAAGTACGACTCTA
TAGCGGCGTTTGTACAAAAACGCCACTAAAGTACAAGCCTATAGCAGCGTTTGTAAAAAAACGCC
ACAAAATTACGACTCTATAGCGGCGTTTTATATAA
Found at i:8934813 original size:16 final size:16
Alignment explanation
Indices: 8934792--8934837 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
8934782 TTCAAATATA
8934792 ATACTTAAACTAATTC
1 ATACTTAAACTAATTC
*
8934808 ATACTTAAA--AA-TA
1 ATACTTAAACTAATTC
8934821 ATACTTAAACTAATTC
1 ATACTTAAACTAATTC
8934837 A
1 A
8934838 ATACACCCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 10 0.40
14 2 0.08
15 2 0.08
16 11 0.44
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (16 bp):
ATACTTAAACTAATTC
Found at i:8934840 original size:17 final size:17
Alignment explanation
Indices: 8934791--8934841 Score: 67
Period size: 13 Copynumber: 3.3 Consensus size: 17
8934781 ATTCAAATAT
8934791 AATACTTAAACTAATTC
1 AATACTTAAACTAATTC
8934808 -ATACTTAAA--AA-T-
1 AATACTTAAACTAATTC
8934820 AATACTTAAACTAATTC
1 AATACTTAAACTAATTC
8934837 AATAC
1 AATAC
8934842 ACCCAAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
13 10 0.34
14 2 0.07
15 2 0.07
16 10 0.34
17 5 0.17
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (17 bp):
AATACTTAAACTAATTC
Found at i:8934852 original size:30 final size:29
Alignment explanation
Indices: 8934784--8934852 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
8934774 AACTCATATT
* *
8934784 CAAATATAATACTTAAACTAATTCATACT
1 CAAAAATAATACTTAAACTAATTCATACA
*
8934813 TAAAAATAATACTTAAACTAATTCAATACA
1 CAAAAATAATACTTAAACTAATTC-ATACA
**
8934843 CCCAAATAAT
1 CAAAAATAAT
8934853 TATTCAAATT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 22 0.67
30 11 0.33
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.30
Consensus pattern (29 bp):
CAAAAATAATACTTAAACTAATTCATACA
Found at i:8939719 original size:20 final size:20
Alignment explanation
Indices: 8939682--8939730 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
8939672 GTTTTCAAAT
*
8939682 TCGCAACGCGAATATGTAAA
1 TCGCAACACGAATATGTAAA
* * *
8939702 TCGTAACACGAATTTGTAAT
1 TCGCAACACGAATATGTAAA
8939722 TCGCAACAC
1 TCGCAACAC
8939731 ATAAATCAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.24
Consensus pattern (20 bp):
TCGCAACACGAATATGTAAA
Found at i:8939920 original size:22 final size:22
Alignment explanation
Indices: 8939895--8939937 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8939885 TCACTCTCTA
* *
8939895 CGACGACATCCGTCCCCATCTT
1 CGACGAAATACGTCCCCATCTT
*
8939917 CGACGAAATATGTCCCCATCT
1 CGACGAAATACGTCCCCATCT
8939938 CTGGCGAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.40, G:0.14, T:0.23
Consensus pattern (22 bp):
CGACGAAATACGTCCCCATCTT
Found at i:8941667 original size:18 final size:18
Alignment explanation
Indices: 8941646--8941694 Score: 98
Period size: 18 Copynumber: 2.7 Consensus size: 18
8941636 CCCCACTTTG
8941646 AGAGCCATCACCTCACCC
1 AGAGCCATCACCTCACCC
8941664 AGAGCCATCACCTCACCC
1 AGAGCCATCACCTCACCC
8941682 AGAGCCATCACCT
1 AGAGCCATCACCT
8941695 GATCGAGCCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.29, C:0.47, G:0.12, T:0.12
Consensus pattern (18 bp):
AGAGCCATCACCTCACCC
Found at i:8941941 original size:21 final size:21
Alignment explanation
Indices: 8941917--8941966 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
8941907 TGGTGCATGG
*
8941917 CGTGATGAGGTA-CGGTCTTTA
1 CGTGATGAGGTAGAGGT-TTTA
*
8941938 CGTGGTGAGGTAGAGGTTTTA
1 CGTGATGAGGTAGAGGTTTTA
*
8941959 CGCGATGA
1 CGTGATGA
8941967 CAATGGTGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.20, C:0.12, G:0.38, T:0.30
Consensus pattern (21 bp):
CGTGATGAGGTAGAGGTTTTA
Found at i:8942358 original size:21 final size:21
Alignment explanation
Indices: 8942307--8942425 Score: 98
Period size: 21 Copynumber: 5.7 Consensus size: 21
8942297 GAAGCACTTG
* * *
8942307 TCATCGTTTAAGAGGCCTCTC
1 TCATCCTTCAAGAGGCCCCTC
* *
8942328 -CTATCGTTCAAGAGGCCCCTA
1 TC-ATCCTTCAAGAGGCCCCTC
*
8942349 TCATCCTTCAAGAGGCCACTC
1 TCATCCTTCAAGAGGCCCCTC
* *
8942370 CCA-CCATTCAAGAGGCCCCTG
1 TCATCC-TTCAAGAGGCCCCTC
* *
8942391 TCATCGTTCAAGAGGTCCCTC
1 TCATCCTTCAAGAGGCCCCTC
* *
8942412 TCATCGTTCGAGAG
1 TCATCCTTCAAGAG
8942426 CCCGATTCAC
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
20 3 0.04
21 75 0.94
22 2 0.03
ACGTcount: A:0.22, C:0.34, G:0.19, T:0.25
Consensus pattern (21 bp):
TCATCCTTCAAGAGGCCCCTC
Found at i:8942380 original size:42 final size:42
Alignment explanation
Indices: 8942307--8942405 Score: 135
Period size: 42 Copynumber: 2.4 Consensus size: 42
8942297 GAAGCACTTG
* * * * *
8942307 TCATCGTTTAAGAGGCCTCTCCTATCGTTCAAGAGGCCCCTA
1 TCATCGTTCAAGAGGCCACTCCCACCATTCAAGAGGCCCCTA
* *
8942349 TCATCCTTCAAGAGGCCACTCCCACCATTCAAGAGGCCCCTG
1 TCATCGTTCAAGAGGCCACTCCCACCATTCAAGAGGCCCCTA
8942391 TCATCGTTCAAGAGG
1 TCATCGTTCAAGAGG
8942406 TCCCTCTCAT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.24
Consensus pattern (42 bp):
TCATCGTTCAAGAGGCCACTCCCACCATTCAAGAGGCCCCTA
Found at i:8943855 original size:64 final size:65
Alignment explanation
Indices: 8943773--8943908 Score: 202
Period size: 64 Copynumber: 2.1 Consensus size: 65
8943763 GAAATTGATG
*
8943773 TATTTGTAAAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGCTTGTTTAATT
1 TATTTGTAAAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGCATGTTTAATT
* * ***
8943838 TATTTGT-AAAAGTTGATTTGTTTAATTGATGTGTAAATAATTCTTATTTTTTGCATGTTTAATT
1 TATTTGTAAAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGCATGTTTAATT
*
8943902 GATTTGT
1 TATTTGT
8943909 TGTTTTAAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
64 57 0.89
65 7 0.11
ACGTcount: A:0.29, C:0.02, G:0.16, T:0.52
Consensus pattern (65 bp):
TATTTGTAAAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGCATGTTTAATT
Found at i:8944260 original size:18 final size:18
Alignment explanation
Indices: 8944237--8944272 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8944227 AAGCCGGTTG
*
8944237 TGATTGGGATTTTGATTT
1 TGATTGCGATTTTGATTT
8944255 TGATTGCGATTTTGATTT
1 TGATTGCGATTTTGATTT
8944273 CCTTTTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.25, T:0.56
Consensus pattern (18 bp):
TGATTGCGATTTTGATTT
Found at i:8947593 original size:20 final size:20
Alignment explanation
Indices: 8947565--8947612 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
8947555 AAAAATTTGT
*
8947565 GTTGTGAATTCAGAAA-TCGA
1 GTTGCGAATTCAGAAACT-GA
**
8947585 GTTGCGAATTTGGAAACTGA
1 GTTGCGAATTCAGAAACTGA
8947605 GTTGCGAA
1 GTTGCGAA
8947613 ATTGGAGTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.29
Consensus pattern (20 bp):
GTTGCGAATTCAGAAACTGA
Found at i:8947997 original size:2 final size:2
Alignment explanation
Indices: 8947990--8948041 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
8947980 TAAGGCACGC
8947990 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8948032 AT AT AT AT AT
1 AT AT AT AT AT
8948042 GATTTAGGGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8948215 original size:5 final size:5
Alignment explanation
Indices: 8948205--8948301 Score: 187
Period size: 5 Copynumber: 19.6 Consensus size: 5
8948195 TAGGTTTTAT
8948205 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
8948255 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TA-TA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TAT
8948302 CCACCAATTC
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
4 4 0.04
5 87 0.96
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:8948954 original size:22 final size:22
Alignment explanation
Indices: 8948929--8948970 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
8948919 ATCTAACAAA
*
8948929 TTTTTA-AATATTTTCTATAATT
1 TTTTTATAA-ATTTTATATAATT
8948951 TTTTTATAAATTTTATATAA
1 TTTTTATAAATTTTATATAA
8948971 GTTTACTCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTTTATAAATTTTATATAATT
Found at i:8954649 original size:13 final size:15
Alignment explanation
Indices: 8954623--8954664 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
8954613 GTTAATCAAT
8954623 AAATAAAGTAAATATC-
1 AAATAAA-T-AATATCA
8954639 AAAT-AATAATATCA
1 AAATAAATAATATCA
8954653 AAATAAATAATA
1 AAATAAATAATA
8954665 ATAATTACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.25
14 5 0.21
15 9 0.38
16 4 0.17
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (15 bp):
AAATAAATAATATCA
Found at i:8955126 original size:14 final size:16
Alignment explanation
Indices: 8955095--8955126 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8955085 AGAGCAAATA
8955095 AAAATATAATTATTAT
1 AAAATATAATTATTAT
8955111 AAAATAT-ATT-TTAT
1 AAAATATAATTATTAT
8955125 AA
1 AA
8955127 TAACTCACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAAATATAATTATTAT
Found at i:8959556 original size:16 final size:16
Alignment explanation
Indices: 8959530--8959567 Score: 67
Period size: 16 Copynumber: 2.3 Consensus size: 16
8959520 TCTACTAAAG
8959530 CATGATTGGGTAGATAT
1 CATG-TTGGGTAGATAT
8959547 CATGTTGGGTAGATAT
1 CATGTTGGGTAGATAT
8959563 CATGT
1 CATGT
8959568 GAATAAGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.26, C:0.08, G:0.29, T:0.37
Consensus pattern (16 bp):
CATGTTGGGTAGATAT
Found at i:8959759 original size:19 final size:21
Alignment explanation
Indices: 8959737--8959782 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
8959727 CACAAGGTGG
*
8959737 TCATAAAA-GCAGAAG-GCTT
1 TCATAAAATGCACAAGAGCTT
*
8959756 TCATAAAATGGACAAGAGCTT
1 TCATAAAATGCACAAGAGCTT
8959777 TCATAA
1 TCATAA
8959783 CAAGGAAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 8 0.35
20 5 0.22
21 10 0.43
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.24
Consensus pattern (21 bp):
TCATAAAATGCACAAGAGCTT
Found at i:8966030 original size:8 final size:8
Alignment explanation
Indices: 8966017--8966044 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
8966007 ATATTCTCCC
8966017 ATATGTAT
1 ATATGTAT
8966025 ATATGTAT
1 ATATGTAT
8966033 ATATGTAT
1 ATATGTAT
8966041 ATAT
1 ATAT
8966045 ATCTTCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (8 bp):
ATATGTAT
Found at i:8969568 original size:17 final size:17
Alignment explanation
Indices: 8969546--8969578 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8969536 AAGAAGAAGA
*
8969546 AAAAAATGAGTGAAAAT
1 AAAAAATGAATGAAAAT
8969563 AAAAAATGAATGAAAA
1 AAAAAATGAATGAAAA
8969579 AATGAGGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (17 bp):
AAAAAATGAATGAAAAT
Found at i:8970730 original size:55 final size:55
Alignment explanation
Indices: 8970579--8970996 Score: 598
Period size: 55 Copynumber: 7.7 Consensus size: 55
8970569 CGTTTGATGG
*
8970579 AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCATACGCGATT-TATGA
1 AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTAT-TGA
* *
8970634 AGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCATTGA
1 AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATTGA
* *
8970687 AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGACAGACGCGATTGTTGA
1 AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATTGA
* * *
8970742 AGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGGGCAGACACGATTGTTGA
1 AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATTGA
* * *
8970797 AGATTGCTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACACGATTGTTGA
1 AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATTGA
*
8970852 AGATTGCTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGA-TGA
1 AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATT-ATTGA
* * *
8970907 AGATTG-T-GGGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATTATTGA
1 AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATTGA
* * *
8970960 AGATTGTCCGAGT-TCTATACTCTCTAAAGAAAGAGGG
1 AGATTGTTCGAGTCT-TATACTCTCTGAAGAAATAGGG
8970997 AGCGAACCCG
Statistics
Matches: 334, Mismatches: 21, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.00
53 94 0.28
54 5 0.01
55 234 0.70
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (55 bp):
AGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTATTGA
Found at i:8981369 original size:30 final size:30
Alignment explanation
Indices: 8981333--8981400 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 30
8981323 AAAATTCTAA
8981333 AAAAATTGAA-ACGACCAAATTAAGATTTTT
1 AAAAATTGAAGA-GACCAAATTAAGATTTTT
* ***
8981363 AAAAATTTTAAGAGTTTAAATTAAGATTTTT
1 AAAAA-TTGAAGAGACCAAATTAAGATTTTT
8981394 AAAAATT
1 AAAAATT
8981401 TTAGAGGGGC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 7 0.22
31 24 0.75
32 1 0.03
ACGTcount: A:0.50, C:0.04, G:0.09, T:0.37
Consensus pattern (30 bp):
AAAAATTGAAGAGACCAAATTAAGATTTTT
Found at i:8988537 original size:6 final size:6
Alignment explanation
Indices: 8988528--8988558 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
8988518 CATATATGCC
8988528 TACATA TACATA TACATA TACATA TACATA T
1 TACATA TACATA TACATA TACATA TACATA T
8988559 CATCATCATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.35
Consensus pattern (6 bp):
TACATA
Found at i:8988955 original size:23 final size:23
Alignment explanation
Indices: 8988895--8988990 Score: 102
Period size: 23 Copynumber: 4.2 Consensus size: 23
8988885 CACCGAAGTT
* * *
8988895 CCGCGTAGAAATATCTCAAAGGA
1 CCGCGTAGAAATGTCCCGAAGGA
* * * *
8988918 CCACATAGTATTGTCCCGAAGGA
1 CCGCGTAGAAATGTCCCGAAGGA
8988941 CCGCGTAGAAATGTCCCGAAGGA
1 CCGCGTAGAAATGTCCCGAAGGA
* * *
8988964 CCACGTAGAATTGTCCTGAAGGA
1 CCGCGTAGAAATGTCCCGAAGGA
8988987 CCGC
1 CCGC
8988991 ATATAACCCT
Statistics
Matches: 58, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.31, C:0.26, G:0.25, T:0.18
Consensus pattern (23 bp):
CCGCGTAGAAATGTCCCGAAGGA
Found at i:8988963 original size:46 final size:46
Alignment explanation
Indices: 8988895--8988990 Score: 138
Period size: 46 Copynumber: 2.1 Consensus size: 46
8988885 CACCGAAGTT
* *
8988895 CCGCGTAGAAATATCTCAAAGGACCACATAGTATTGTCCCGAAGGA
1 CCGCGTAGAAATATCCCAAAGGACCACATAGAATTGTCCCGAAGGA
* * * *
8988941 CCGCGTAGAAATGTCCCGAAGGACCACGTAGAATTGTCCTGAAGGA
1 CCGCGTAGAAATATCCCAAAGGACCACATAGAATTGTCCCGAAGGA
8988987 CCGC
1 CCGC
8988991 ATATAACCCT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.31, C:0.26, G:0.25, T:0.18
Consensus pattern (46 bp):
CCGCGTAGAAATATCCCAAAGGACCACATAGAATTGTCCCGAAGGA
Found at i:8989232 original size:45 final size:45
Alignment explanation
Indices: 8989181--8989278 Score: 108
Period size: 45 Copynumber: 2.2 Consensus size: 45
8989171 ATATCCTAGT
* * *
8989181 CACATAGTTTATATCACATGT-TCATATAATCACTTAGATCAATAC
1 CACATAGCTCATATCACAT-TCTCATATAATCACATAGATCAATAC
* * * *
8989226 CACATAGCTCATATCATATTCTCATGTAATCACATAGGTCAATAT
1 CACATAGCTCATATCACATTCTCATATAATCACATAGATCAATAC
*
8989271 CATATAGC
1 CACATAGC
8989279 AGAGAATATA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 1 0.02
45 43 0.98
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (45 bp):
CACATAGCTCATATCACATTCTCATATAATCACATAGATCAATAC
Found at i:8993587 original size:23 final size:23
Alignment explanation
Indices: 8993561--8993641 Score: 81
Period size: 23 Copynumber: 3.5 Consensus size: 23
8993551 TATCCCAAAA
*
8993561 GACCACATAGTATTGTCCCGAAG
1 GACCACATAGAATTGTCCCGAAG
* * * * *
8993584 GACCGCGTAGAAATATCCCTAAG
1 GACCACATAGAATTGTCCCGAAG
* *
8993607 GACCACATGGAATTGTCCTGAAG
1 GACCACATAGAATTGTCCCGAAG
*
8993630 GACCGCATAGAA
1 GACCACATAGAA
8993642 CCCTCGACTC
Statistics
Matches: 43, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.33, C:0.25, G:0.23, T:0.19
Consensus pattern (23 bp):
GACCACATAGAATTGTCCCGAAG
Found at i:8993599 original size:46 final size:46
Alignment explanation
Indices: 8993532--8993641 Score: 150
Period size: 46 Copynumber: 2.4 Consensus size: 46
8993522 ATAAATTGCA
*
8993532 CCGAAGTG-CCGCGTAGAAATATCCCAAAAGACCACATAGTATTGTC
1 CCGAAG-GACCGCGTAGAAATATCCCAAAAGACCACATAGAATTGTC
* * *
8993578 CCGAAGGACCGCGTAGAAATATCCCTAAGGACCACATGGAATTGTC
1 CCGAAGGACCGCGTAGAAATATCCCAAAAGACCACATAGAATTGTC
* *
8993624 CTGAAGGACCGCATAGAA
1 CCGAAGGACCGCGTAGAA
8993642 CCCTCGACTC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
45 1 0.02
46 56 0.98
ACGTcount: A:0.35, C:0.25, G:0.23, T:0.17
Consensus pattern (46 bp):
CCGAAGGACCGCGTAGAAATATCCCAAAAGACCACATAGAATTGTC
Found at i:8993877 original size:45 final size:45
Alignment explanation
Indices: 8993826--8993913 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
8993816 ATATCCTTGT
* *
8993826 CACATAGTTTATATCACATGT-TCATATAATCACTTAGGTCAATGC
1 CACATAGCTTATATCACAT-TCTCATATAATCACATAGGTCAATGC
* *
8993871 CACATAGCTTATATCATATTCTCATGTAATCACATAGGTCAAT
1 CACATAGCTTATATCACATTCTCATATAATCACATAGGTCAAT
8993914 ATCATATAGC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 1 0.03
45 37 0.97
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.35
Consensus pattern (45 bp):
CACATAGCTTATATCACATTCTCATATAATCACATAGGTCAATGC
Found at i:8993923 original size:45 final size:45
Alignment explanation
Indices: 8993826--8993923 Score: 117
Period size: 45 Copynumber: 2.2 Consensus size: 45
8993816 ATATCCTTGT
* * *
8993826 CACATAGTTTATATCACATGTTCATATAATCACTTAGGTCAATGC
1 CACATAGCTTATATCACATGTTCATATAATCACATAGGTCAATAC
* * *
8993871 CACATAGCTTATATCATAT-TCTCATGTAATCACATAGGTCAATAT
1 CACATAGCTTATATCACATGT-TCATATAATCACATAGGTCAATAC
*
8993916 CATATAGC
1 CACATAGC
8993924 AAGGAATATA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 1 0.02
45 44 0.98
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (45 bp):
CACATAGCTTATATCACATGTTCATATAATCACATAGGTCAATAC
Found at i:8995746 original size:35 final size:35
Alignment explanation
Indices: 8995700--8995803 Score: 169
Period size: 35 Copynumber: 3.1 Consensus size: 35
8995690 ATGTTCTAGC
8995700 AACTCTCTATATTCTGTTAATATTAATGCTTAACA
1 AACTCTCTATATTCTGTTAATATTAATGCTTAACA
* *
8995735 AACTCACTATATTATGTTAATATTAATGCTTAACA
1 AACTCTCTATATTCTGTTAATATTAATGCTTAACA
8995770 AACTCTCTATATTC---TAATATTAATGCTTAACA
1 AACTCTCTATATTCTGTTAATATTAATGCTTAACA
8995802 AA
1 AA
8995804 TATGAATGCA
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
32 20 0.31
35 45 0.69
ACGTcount: A:0.38, C:0.16, G:0.05, T:0.40
Consensus pattern (35 bp):
AACTCTCTATATTCTGTTAATATTAATGCTTAACA
Found at i:8999781 original size:39 final size:39
Alignment explanation
Indices: 8999731--8999823 Score: 152
Period size: 39 Copynumber: 2.4 Consensus size: 39
8999721 GGGAATTGAT
*
8999731 GAGTCTCTTGGGAGTTAGTGTGTTTTATTGTGAATTTAA
1 GAGTCTCTTGGGAGTTAGAGTGTTTTATTGTGAATTTAA
*
8999770 GAGTCTTTTGGGAGTTAGAGTGTTTTATTGTGAATTTAA
1 GAGTCTCTTGGGAGTTAGAGTGTTTTATTGTGAATTTAA
*
8999809 GAGT-TCTTGGAAGTT
1 GAGTCTCTTGGGAGTT
8999824 GGAGAGTCTT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
38 9 0.18
39 41 0.82
ACGTcount: A:0.22, C:0.04, G:0.29, T:0.45
Consensus pattern (39 bp):
GAGTCTCTTGGGAGTTAGAGTGTTTTATTGTGAATTTAA
Found at i:9001136 original size:4 final size:4
Alignment explanation
Indices: 9001127--9001152 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
9001117 CGATATCAAA
9001127 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
9001153 TATATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:9001247 original size:119 final size:118
Alignment explanation
Indices: 9001034--9001257 Score: 265
Period size: 119 Copynumber: 1.9 Consensus size: 118
9001024 AATATTAATT
* * * *
9001034 TATATATATTTATAAATAAAATATTTATTTATTTAGAAATATCAGAAAAGGACTTCTAGGTACCT
1 TATATATATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAAGAACATCCAGGTACCT
* *
9001099 TAAGACAGCTCTTTTCTTCGATATCAAAAAATAAATAAATAAATAAATAAATAA
66 TAAGACAGCTCATTTCTTCAATATC-AAAAATAAATAAATAAATAAATAAATAA
** * **
9001153 TATATA-ATTTATAAAATAGGATATTTATTTATTTAAAAATATCAGAAAATGAACATCCAGTTGT
1 TATATATATTTAT-AAATAAAATATTTATTTATTTAAAAATATCAGAAAA-GAACATCCAGGTAC
* * *
9001217 TTTAAGACTG-TCATTTCTT-AATATTGAAAAATAAATAAATA
64 CTTAAGACAGCTCATTTCTTCAATA-TCAAAAATAAATAAATA
9001258 TTAAAACACG
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
118 24 0.27
119 48 0.55
120 16 0.18
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (118 bp):
TATATATATTTATAAATAAAATATTTATTTATTTAAAAATATCAGAAAAGAACATCCAGGTACCT
TAAGACAGCTCATTTCTTCAATATCAAAAATAAATAAATAAATAAATAAATAA
Found at i:9002733 original size:3 final size:3
Alignment explanation
Indices: 9002727--9002796 Score: 81
Period size: 3 Copynumber: 22.7 Consensus size: 3
9002717 ATTATTTTTT
9002727 TAA TAA TAA TAA T-A TATA TAA TAA TATA TATA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TA-A TAA TAA TAA TAA TAA
*
9002774 TAA TAA TTA TAA T-A TAAA TAA TA
1 TAA TAA TAA TAA TAA T-AA TAA TA
9002797 TTCAAATGAA
Statistics
Matches: 60, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
2 4 0.07
3 44 0.73
4 12 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:9003096 original size:17 final size:17
Alignment explanation
Indices: 9003074--9003124 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
9003064 ATTGAACAAG
9003074 TTCTTCTCATTATGAAC
1 TTCTTCTCATTATGAAC
* *
9003091 TTCTTCTTCA-GATG-AG
1 TTCTTC-TCATTATGAAC
9003107 TTCTTCTCATTATGAAC
1 TTCTTCTCATTATGAAC
9003124 T
1 T
9003125 CTCTCTGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
15 3 0.11
16 10 0.37
17 11 0.41
18 3 0.11
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.47
Consensus pattern (17 bp):
TTCTTCTCATTATGAAC
Found at i:9003260 original size:113 final size:113
Alignment explanation
Indices: 9003059--9003949 Score: 1199
Period size: 113 Copynumber: 7.9 Consensus size: 113
9003049 AGAATCATGC
*
9003059 AAAAGATTGAACAAGTTCTTCTCATTATGAA------CTT-CTTCTTCAGATGAGTTCTTCTCAT
1 AAAAG-TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * * *
9003117 TATGAACTCTCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCGAGCA
65 TATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAACA
*
9003166 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * * *
9003231 ATGAACTCGAC-CTGGCAATGCTGATCCATCGAATGATGAATTCAAGCG
66 ATGAACTC-TCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAACA
*
9003279 AAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* ** *
9003344 ATGAACTCTTTCACTGGGGATGCTGATCCATCAAATGATGAATTCAAACA
66 ATGAACTC--TCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAACA
* * * *
9003394 AAAAGTTGACCAAATTCTTCTCATTATGAATTTATTCTTCCTTCTTCAGATGAGTTCTTTTCATT
1 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * ** *
9003459 ATGAACTTTTTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCA
66 ATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAACA
* * * * * *
9003507 AAAGGTTGAACAAGTTTTTCTCATTATGAACTTTTTCTTCCTTCTTTAGATGAGTTCTTCTTATT
1 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * ** *
9003572 ATGAACTATTTCACTGGGGATGCTGATCCATCAAATGATGAATTCAAACA
66 ATGAAC--TCTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAACA
* *
9003622 AAAGGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* *
9003687 ATGAACTATCTCTGGAAAAGCTGATCCATCAAGTGATGAATTCAAACA
66 ATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAACA
*
9003735 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* *
9003800 ATGAACTATCTCTGGAAAAGCTGATCCATCAATTGATGAATTCAAAC-
66 ATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAACA
*
9003847 AAAAGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* *
9003912 ATGAACT-TCTTCTGGAAAAACTGATCCATCAAGTGATG
66 ATGAACTCTC-TCTGGAAAAGCTGATCCATCAAATGATG
9003950 GATTTGAATC
Statistics
Matches: 701, Mismatches: 70, Indels: 21
0.89 0.09 0.03
Matches are distributed among these distances:
106 24 0.03
107 5 0.01
111 2 0.00
112 99 0.14
113 372 0.53
114 2 0.00
115 197 0.28
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.37
Consensus pattern (113 bp):
AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTCTCTCTGGAAAAGCTGATCCATCAAATGATGAATTCAAACA
Found at i:9003386 original size:228 final size:226
Alignment explanation
Indices: 9003044--9003949 Score: 1239
Period size: 228 Copynumber: 4.0 Consensus size: 226
9003034 ATCTCCTTCT
* *
9003044 GTGATAGAA-TCATGCAAAAGATTGAACAAGTTCTTCTCATTATGAA------CTT-CTTCTTCA
1 GTGAT-GAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* * * * * *
9003101 GATGAGTTCTTCTCATTATGAACTC--TCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCGAG
65 GATGAGTTCTTCTCATTATGAACTCTTTCACTGGAAAAGCTGATCCATCAAATGATGAATTCAAA
* *
9003164 CAAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCA
130 CAAAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
9003229 TTATGAACTCGACCTGGCAATGCTGATCCATCGAA
195 TTATGAACT--ACCTGGAAAAGCTGATCCATC-AA
9003264 -TGATGAATTCAAGCGAAAA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
1 GTGATGAATTCAAGC-AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
** *
9003327 GATGAGTTCTTCTCATTATGAACTCTTTCACTGGGGATGCTGATCCATCAAATGATGAATTCAAA
65 GATGAGTTCTTCTCATTATGAACTCTTTCACTGGAAAAGCTGATCCATCAAATGATGAATTCAAA
* * *
9003392 CAAAAAGTTGACCAAATTCTTCTCATTATGAATTTATTCTTCCTTCTTCAGATGAGTTCTTTTCA
130 CAAAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCA
**
9003457 TTATGAACTTTTTCTGGAAAAGCTGATCCATCAA
195 TTATGAAC--TACCTGGAAAAGCTGATCCATCAA
* ** * * *
9003491 GTGATGGATTTGAGCAAAAGGTTGAACAAGTTTTTCTCATTATGAACTTTTTCTTCCTTCTTTAG
1 GTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
* * ** *
9003556 ATGAGTTCTTCTTATTATGAACTATTTCACTGGGGATGCTGATCCATCAAATGATGAATTCAAAC
66 ATGAGTTCTTCTCATTATGAACTCTTTCACTGGAAAAGCTGATCCATCAAATGATGAATTCAAAC
*
9003621 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCAT
131 AAAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCAT
9003686 TATGAACTATCTCTGGAAAAGCTGATCCATCAA
196 TATGAACTA-C-CTGGAAAAGCTGATCCATCAA
* *
9003719 GTGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
1 GTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
* * *
9003784 ATGAGTTCTTCTCATTATGAA--CTATCTCTGGAAAAGCTGATCCATCAATTGATGAATTCAAAC
66 ATGAGTTCTTCTCATTATGAACTCTTTCACTGGAAAAGCTGATCCATCAAATGATGAATTCAAAC
* *
9003847 -AAAAGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
131 AAAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
9003911 TATGAACTTCTTCTGGAAAAACTGATCCATCAA
196 TATGAACTAC--CTGGAAAAGCTGATCCATCAA
9003944 GTGATG
1 GTGATG
9003950 GATTTGAATC
Statistics
Matches: 613, Mismatches: 55, Indels: 31
0.88 0.08 0.04
Matches are distributed among these distances:
218 3 0.00
219 34 0.06
220 4 0.01
224 1 0.00
225 99 0.16
226 69 0.11
227 6 0.01
228 396 0.65
230 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.37
Consensus pattern (226 bp):
GTGATGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAG
ATGAGTTCTTCTCATTATGAACTCTTTCACTGGAAAAGCTGATCCATCAAATGATGAATTCAAAC
AAAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTACCTGGAAAAGCTGATCCATCAA
Found at i:9003575 original size:341 final size:340
Alignment explanation
Indices: 9003059--9003918 Score: 1247
Period size: 341 Copynumber: 2.5 Consensus size: 340
9003049 AGAATCATGC
*
9003059 AAAAGATTGAACAAGTTCTTCTCATTATG-A---A--CTT-CTTCTTCAGATGAGTTCTTCTCAT
1 AAAAG-TTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
9003117 TATGAACTCTCTCTGGAAAAGTTGATCCATCGAGTGATGAATTCGAGCAAAAAGTTGAACAAATT
65 TATGAACTATCTCTGGAAAAGCTGATCCATCAAGTGATGAATTCGAGC-AAAAGTTGAACAAATT
* *
9003182 CTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACT-CGAC-CTG
129 CTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTACGACACTG
* * *
9003245 GCAATGCTGATCCATCGAATGATGAATTCAAGCGAAAA-GTTGAACAAGTTCTTCTCATTATGAA
194 GCAATGCTGATCCATCAAATGATGAATTCAAAC-AAAAGGTTGAACAAATTCTTCTCATTATGAA
* * ** *
9003309 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCACTGGGGATGCTGATCCA
258 CTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA--CTATCACTGGAAAAGCTGATCCA
9003374 TCAAATGATGAATTCAAACA
321 TCAAATGATGAATTCAAACA
* * *
9003394 AAAAGTTGACCAAATTCTTCTCATTATGAATTTATTCTTCCTTCTTCAGATGAGTTCTTTTCATT
1 AAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * * * * *
9003459 ATGAACTTTTTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGTTT
66 ATGAACTATCTCTGGAAAAGCTGATCCATCAAGTGATGAATTCGAGCAAAA-GTTGAACAAATTC
* * ***
9003524 TTCTCATTATGAACTTTTTCTTCCTTCTTTAGATGAGTTCTTCTTATTATGAACTATTTCACTGG
130 TTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTACGACACTGG
**
9003589 GGATGCTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACT
195 CAATGCTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACT
*
9003654 TATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTATCTCTGGAAAAGCTGATCCATCAA
260 TATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTATCACTGGAAAAGCTGATCCATCAA
*
9003719 GTGATGAATTCAAACA
325 ATGATGAATTCAAACA
* *
9003735 AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
1 AAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
9003800 ATGAACTATCTCTGGAAAAGCTGATCCATCAATTGATGAATTCAAACAAAAGTTGAACAAATTCT
66 ATGAACTATCTCTGGAAAAGCTGATCCATCAAGTGATGAATTCGAGCAAAAGTTGAACAAATTCT
9003865 TCTCATTATGAA-TTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
131 TCTCATTATGAACTTT-TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
9003919 TCTTCTGGAA
Statistics
Matches: 467, Mismatches: 46, Indels: 19
0.88 0.09 0.04
Matches are distributed among these distances:
334 21 0.04
335 6 0.01
338 1 0.00
339 3 0.01
340 67 0.14
341 268 0.57
342 5 0.01
343 96 0.21
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.37
Consensus pattern (340 bp):
AAAAGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTATCTCTGGAAAAGCTGATCCATCAAGTGATGAATTCGAGCAAAAGTTGAACAAATTCT
TCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTACGACACTGGC
AATGCTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTT
ATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTATCACTGGAAAAGCTGATCCATCAAA
TGATGAATTCAAACA
Found at i:9004381 original size:22 final size:22
Alignment explanation
Indices: 9004356--9004410 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
9004346 GATAAAGCTT
* *
9004356 TCATCTTTGAAAAGAGAATTTG
1 TCATCTTTGAAAAGAGAATCTA
* *
9004378 TCATCTTTAAAAAGGGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
9004400 TCATCTTTGAA
1 TCATCTTTGAA
9004411 GAGTGTAGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:9004872 original size:54 final size:55
Alignment explanation
Indices: 9004777--9004882 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
9004767 AGAATAACTA
* *
9004777 GTTCGTAAAACATATTGACAACACATTCTTCATCTCATGTGGTTTCAGCTCAAAT
1 GTTCGTAAAACATATTGACAACACATTCTCCATCTCATGTGGCTTCAGCTCAAAT
* * * *
9004832 GTTCGTAAAGCAT-TTGACAACACATTCATCCTTTTC-TGTGGCTTCTGCTCA
1 GTTCGTAAAACATATTGACAACACATTC-TCCATCTCATGTGGCTTCAGCTCA
9004883 GATTTCTCAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 27 0.61
55 17 0.39
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (55 bp):
GTTCGTAAAACATATTGACAACACATTCTCCATCTCATGTGGCTTCAGCTCAAAT
Found at i:9007158 original size:114 final size:114
Alignment explanation
Indices: 9006958--9007177 Score: 395
Period size: 114 Copynumber: 1.9 Consensus size: 114
9006948 GATCATGCAG
* *
9006958 TTCATCTTTCAATTCCAATGATTGGTTCTGGGGTTCCTACCGAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCCTACCAAACCAGATCAGATAACTCAAAGA
9007023 ACACTTCCAGAAGATGCTATTGGATCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGGATCTCCTTATTTCTACTATGAGCAAA
* *
9007072 TTCATCTTTCAAATCCAATGATTGGTTTTGGGGTTCCTACCAAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCCTACCAAACCAGATCAGATAACTCAAAGA
*
9007137 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTA
66 ACACTTCCAGAAGATGCTATTGGATCTCCTTATTTCTACTA
9007178 AGAGAACGTG
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
114 101 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTCCTACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGGATCTCCTTATTTCTACTATGAGCAAA
Found at i:9009371 original size:27 final size:27
Alignment explanation
Indices: 9009341--9009393 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
9009331 CCCTTCTTCT
*
9009341 TTTTCCCTTTTT-TTCTTTTTTCTTTCA
1 TTTTCCCTTTTTCATC-TTTTTCTTTCA
*
9009368 TTTTTCCTTTTTCATCTTTTTCTTTC
1 TTTTCCCTTTTTCATCTTTTTCTTTC
9009394 TTTCTTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.74
Consensus pattern (27 bp):
TTTTCCCTTTTTCATCTTTTTCTTTCA
Found at i:9014368 original size:20 final size:21
Alignment explanation
Indices: 9014345--9014383 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
9014335 TTAATACCTG
9014345 AATAAAATA-ATAAAAATATT
1 AATAAAATATATAAAAATATT
9014365 AATAAAATATATAAAAATA
1 AATAAAATATATAAAAATA
9014384 ATAAGTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (21 bp):
AATAAAATATATAAAAATATT
Found at i:9016514 original size:3 final size:3
Alignment explanation
Indices: 9016508--9016592 Score: 102
Period size: 3 Copynumber: 27.7 Consensus size: 3
9016498 ATTATTTTTT
9016508 TAA TAA TAA TAA TAA TAA TAA TAA T-A TATA TATA TATA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TA-A TAA TAA TAA
* *
9016555 TAA TAA TAA TAA TAA TAA TTA TTA TAA T-A TAAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TA
9016593 TTCAAATGAA
Statistics
Matches: 76, Mismatches: 2, Indels: 8
0.88 0.02 0.09
Matches are distributed among these distances:
2 4 0.05
3 59 0.78
4 13 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:9018818 original size:215 final size:216
Alignment explanation
Indices: 9018367--9018845 Score: 836
Period size: 215 Copynumber: 2.2 Consensus size: 216
9018357 AACAAATATG
*
9018367 AAATATGAAATTACAAATTAAAATTTAAATAAATTAAACAACACAAATTGATGAGGGGTCAAATC
1 AAATATGAAATTACAAA-TAAAATTTAAATAAATTAAACAACACAAATTGATGAGGGATCAAATC
*
9018432 GAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCATTTAAAA
65 GAAATAATTTTAAATTGTGAGGTAGAAATTAATACAAAAAAGTACTAAATTATACCCATTTAAAA
*
9018497 AGTTATGGGCCAATTAAAAAAATATAAATAAGTAATAAGTATGAGCCAATTTCAGATGAAAATAT
130 AGTTATGGGCCAAATAAAAAAATATAAATAAGTAATAAGTATGAGCCAATTTCAGATGAAAATAT
9018562 AATTTTAAGGACTAAATTGAAC
195 AATTTTAAGGACTAAATTGAAC
* *
9018584 AAATATGAAATTACAAATAAACATTTAAATAAATTAAACAATACACATTGATGAGGGATCAAATC
1 AAATATGAAATTACAAATAAA-ATTTAAATAAATTAAACAACACAAATTGATGAGGGATCAAATC
* *
9018649 GAAATAATTTTAAATTGTGAGGTAGAAATTAATAC-AAAAAGTATTATATTATACCCATTTAAAA
65 GAAATAATTTTAAATTGTGAGGTAGAAATTAATACAAAAAAGTACTAAATTATACCCATTTAAAA
* *
9018713 AGTTATGGGCCAAAT-AAAAAATATAAATAAGTAATAAGTATGAGCCAATTTCAGATGCAACTAT
130 AGTTATGGGCCAAATAAAAAAATATAAATAAGTAATAAGTATGAGCCAATTTCAGATGAAAATAT
9018777 AATTTTAAGGACTAAATTGAAC
195 AATTTTAAGGACTAAATTGAAC
9018799 AAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACAAA
1 AAATATGAAATTACAAAT-AAAATTTAAATAAATTAAACAACACAAA
9018846 GGGATCAAAT
Statistics
Matches: 249, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
215 110 0.44
216 48 0.19
217 91 0.37
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (216 bp):
AAATATGAAATTACAAATAAAATTTAAATAAATTAAACAACACAAATTGATGAGGGATCAAATCG
AAATAATTTTAAATTGTGAGGTAGAAATTAATACAAAAAAGTACTAAATTATACCCATTTAAAAA
GTTATGGGCCAAATAAAAAAATATAAATAAGTAATAAGTATGAGCCAATTTCAGATGAAAATATA
ATTTTAAGGACTAAATTGAAC
Found at i:9018956 original size:2 final size:2
Alignment explanation
Indices: 9018940--9019084 Score: 106
Period size: 2 Copynumber: 73.0 Consensus size: 2
9018930 CTAAAACAAC
9018940 TA TA -A TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
9018980 AA GTA TA TA TA T- TA TA TA TA TA AA CTA TA TA GTT TA TA TT TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA
* * *
9019022 AA T- TA T- TA TA TA CTA TA TA CA AA CTA TA TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
* *
9019063 TA T- TA TG TA TA AA CTA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA
9019085 CCATGTATAA
Statistics
Matches: 113, Mismatches: 17, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
1 7 0.06
2 99 0.88
3 7 0.06
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.46
Consensus pattern (2 bp):
TA
Found at i:9018960 original size:11 final size:11
Alignment explanation
Indices: 9018944--9019084 Score: 85
Period size: 11 Copynumber: 12.5 Consensus size: 11
9018934 AACAACTATA
9018944 ATATATAATAT
1 ATATATAATAT
9018955 ATATAT-ATAT
1 ATATATAATAT
9018965 ATATAT-ATAT
1 ATATATAATAT
9018975 ATATA-AAGTAT
1 ATATATAA-TAT
*
9018986 ATATATTATAT
1 ATATATAATAT
9018997 ATATA-AACTAT
1 ATATATAA-TAT
* *
9019008 ATAGTTTATATTT
1 ATA-TATA-ATAT
* *
9019021 AAATTATTATAT
1 ATA-TATAATAT
*
9019033 ACTATATACAAACT
1 A-TATATA-ATA-T
*
9019047 ATATATTATAT
1 ATATATAATAT
*
9019058 ATATATATTAT
1 ATATATAATAT
*
9019069 GTATA-AACTAT
1 ATATATAA-TAT
9019080 ATATA
1 ATATA
9019085 CCATGTATAA
Statistics
Matches: 100, Mismatches: 19, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
10 22 0.22
11 49 0.49
12 11 0.11
13 15 0.15
14 3 0.03
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (11 bp):
ATATATAATAT
Found at i:9019090 original size:20 final size:20
Alignment explanation
Indices: 9019057--9019104 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
9019047 ATATATTATA
**
9019057 TATATATATTATGTATAAAC
1 TATATATACCATGTATAAAC
9019077 TATATATACCATGTATAAAC
1 TATATATACCATGTATAAAC
9019097 TATA-ATAC
1 TATATATAC
9019105 TATATAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 4 0.15
20 22 0.85
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (20 bp):
TATATATACCATGTATAAAC
Found at i:9019182 original size:11 final size:11
Alignment explanation
Indices: 9019154--9019206 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 11
9019144 TACATAGTTT
9019154 ATTA-ATATAA
1 ATTATATATAA
9019164 ATTATATAGT--
1 ATTATATA-TAA
9019174 -TTATATATAA
1 ATTATATATAA
*
9019184 ATTATATATGA
1 ATTATATATAA
*
9019195 ATTATTTATAA
1 ATTATATATAA
9019206 A
1 A
9019207 CTAAACAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
8 1 0.03
9 7 0.20
10 4 0.11
11 22 0.63
12 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (11 bp):
ATTATATATAA
Found at i:9019192 original size:22 final size:22
Alignment explanation
Indices: 9019136--9019191 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
9019126 ATTGAACTAT
* *
9019136 ATATAAACTACATAGTTTATTA
1 ATATAAATTATATAGTTTATTA
9019158 ATATAAATTATATAGTTTA-T-
1 ATATAAATTATATAGTTTATTA
9019178 ATATAAATTATATA
1 ATATAAATTATATA
9019192 TGAATTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 14 0.44
21 1 0.03
22 17 0.53
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.45
Consensus pattern (22 bp):
ATATAAATTATATAGTTTATTA
Found at i:9019199 original size:22 final size:20
Alignment explanation
Indices: 9019133--9019303 Score: 68
Period size: 22 Copynumber: 8.4 Consensus size: 20
9019123 ACTATTGAAC
* * *
9019133 TATATATAAACTACATAGTT
1 TATATATAAATTATATAGAT
*
9019153 TATTAATATAAATTATATAGTT
1 TA-T-ATATAAATTATATAGAT
9019175 TATATATAAATTATATATGAAT
1 TATATATAAATTATATA-G-AT
* * * *
9019197 TATTTATAAACTAAACA-AT
1 TATATATAAATTATATAGAT
*
9019216 T-TATAT---TTATATATTAT
1 TATATATAAATTATATA-GAT
* *
9019233 GTATAATTATAAATAATATATA-
1 -TAT-A-TATAAATTATATAGAT
* *
9019255 T-TGTATAAATTATATAGTT
1 TATATATAAATTATATAGAT
* *
9019274 TATTAATATAAACTATATAGTT
1 TA-T-ATATAAATTATATAGAT
9019296 TATATATA
1 TATATATA
9019304 TATAATATGG
Statistics
Matches: 116, Mismatches: 18, Indels: 34
0.69 0.11 0.20
Matches are distributed among these distances:
15 4 0.03
17 2 0.02
18 17 0.15
19 5 0.04
20 23 0.20
21 9 0.08
22 48 0.41
23 2 0.02
24 6 0.05
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (20 bp):
TATATATAAATTATATAGAT
Found at i:9019487 original size:9 final size:9
Alignment explanation
Indices: 9019475--9019520 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
9019465 GAAATATATG
9019475 TATAAACTA
1 TATAAACTA
9019484 TATAAACTA
1 TATAAACTA
*
9019493 TAT---TTA
1 TATAAACTA
9019499 TATAAACTA
1 TATAAACTA
*
9019508 TGTAAACTA
1 TATAAACTA
9019517 TATA
1 TATA
9019521 GTTTACATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
6 5 0.17
9 25 0.83
ACGTcount: A:0.50, C:0.09, G:0.02, T:0.39
Consensus pattern (9 bp):
TATAAACTA
Found at i:9019495 original size:24 final size:24
Alignment explanation
Indices: 9019468--9019520 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
9019458 TACATATGAA
*
9019468 ATATATGTATAAACTATATAAACT
1 ATATATATATAAACTATATAAACT
* *
9019492 ATATTTATATAAACTATGTAAACT
1 ATATATATATAAACTATATAAACT
9019516 ATATA
1 ATATA
9019521 GTTTACATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.08, G:0.04, T:0.40
Consensus pattern (24 bp):
ATATATATATAAACTATATAAACT
Found at i:9019552 original size:33 final size:33
Alignment explanation
Indices: 9019515--9019588 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 33
9019505 CTATGTAAAC
* *
9019515 TATATAGTTTACATA-TGACCTATATATA-TAGTT
1 TATATAGTTTA-ATAGTGAACTATATAAACTA-TT
*
9019548 TATATAGTTTATTAGTGAACTATATAAACTATT
1 TATATAGTTTAATAGTGAACTATATAAACTATT
9019581 TATATAGT
1 TATATAGT
9019589 ATCTATATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
32 2 0.06
33 32 0.89
34 2 0.06
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.46
Consensus pattern (33 bp):
TATATAGTTTAATAGTGAACTATATAAACTATT
Found at i:9019654 original size:7 final size:7
Alignment explanation
Indices: 9019642--9019689 Score: 53
Period size: 7 Copynumber: 6.7 Consensus size: 7
9019632 TAGTTTATGT
9019642 TTATATA
1 TTATATA
9019649 TTATATA
1 TTATATA
9019656 TTATATA
1 TTATATA
*
9019663 -TATAAA
1 TTATATA
*
9019669 CTATATA
1 TTATATA
9019676 GTATATATA
1 -T-TATATA
9019685 TTATA
1 TTATA
9019690 ATTTACATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
6 5 0.14
7 23 0.66
8 1 0.03
9 6 0.17
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (7 bp):
TTATATA
Found at i:9019767 original size:27 final size:26
Alignment explanation
Indices: 9019706--9019762 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
9019696 ATATGAACTA
*
9019706 TATATAAAAACTATATAAACTATAGTT
1 TATATATAAACTATAT-AACTATAGTT
9019733 TATATATAAACTATAT-ACTATAGTT
1 TATATATAAACTATATAACTATAGTT
*
9019758 GATAT
1 TATAT
9019763 TTATATAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 13 0.46
27 15 0.54
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.40
Consensus pattern (26 bp):
TATATATAAACTATATAACTATAGTT
Found at i:9019825 original size:331 final size:331
Alignment explanation
Indices: 9019436--9020141 Score: 720
Period size: 331 Copynumber: 2.1 Consensus size: 331
9019426 TACTATATGT
* * * * * *
9019436 AAACTATATATACTATATAGTTTACATATGAAATATATGTATAAACTATATAAACTATA-TTTAT
1 AAACTATATAAATTATATAGTTGATATATGAACTATA-GT-TAAACTATATAAACTATAGTTGAT
* *** *
9019500 ATAAAC-TATGTAAACTATATAGTTTACATATGACCTATATATATAGTTTATATAGTTTA-TTAG
64 ATAAACATATG--AAC--TATAGTTTACATATGAACTATATATATAAACTATATAGTTTACATA-
* *
9019563 TGAACTATATA-A-ACTA-TTTATATAGT-ATCTATATATAAACTATGGTT-TATA-T-T-TA-T
124 TGAACTATATATATA-TAGTTTAT-TAGTGAAC--TATATAAACTAT--TTATATAGTATACACT
* * *
9019619 ATACTACAT-A-CTATAGTTTATGTTTATATATTATATA-T-TA-T-ATATATAAACTATATAGT
183 ATA-TACATAAGCTATAGTTTATATTTATATACTACATACTATAGTGATATATAAACTATATA-T
**
9019678 ATATATATTATAATTTACATATGAACTATAT-ATA-AA-AACTATATAAACTATAGTTTATATAT
246 -TATATA-TATAAACTACATAT--ACTATATAATATAATAAC-ATATAAACTATA---TATA-A-
* * *
9019740 AAACTATATACTATAGTTGATATTTATATAG
301 AAACTATATACTATAGTTAACATTAATATAG
*
9019771 AAACTATATAAATTATATAGTTGATATATGAACTATAGTT-TAC-ATATAAACTATAGTTGATAT
1 AAACTATATAAATTATATAGTTGATATATGAACTATAGTTAAACTATATAAACTATAGTTGATAT
** *
9019834 TTACATATGAACTATAGTTTACATATGAACTATATATATAAACTATATAGTTTACATATGAATTA
66 AAACATATGAACTATAGTTTACATATGAACTATATATATAAACTATATAGTTTACATATGAACTA
*
9019899 TATATATATAGTTTATTAGTGAACTATATAAACTATTTATATAGTATACACTATATATATAAGCT
131 TATATATATAGTTTATTAGTGAACTATATAAACTATTTATATAGTATACACTATATACATAAGCT
* *
9019964 ATAGTTTATATTTATATACTACATACTATAGTTGATATTTATACTATATATTATATATATAAACT
196 ATAGTTTATATTTATATACTACATACTATAG-TGATATATAAACTATATATTATATATATAAACT
* * *
9020029 ATATATACTATATAATATAATTTACATATGAACTATATATAAAAACTATATACTATAGTTAACAT
260 ACATATACTATATAATATAA-TAACATATAAACTATATATAAAAACTATATACTATAGTTAACAT
*
9020094 TAATATAT
324 TAATATAG
9020102 AAACTATATAAATTATATAGTTGATATATGAACTATAGTT
1 AAACTATATAAATTATATAGTTGATATATGAACTATAGTT
9020142 GTAACCCCCT
Statistics
Matches: 316, Mismatches: 32, Indels: 50
0.79 0.08 0.13
Matches are distributed among these distances:
327 2 0.01
328 4 0.01
329 61 0.19
330 10 0.03
331 95 0.30
332 16 0.05
333 40 0.13
334 6 0.02
335 47 0.15
336 17 0.05
337 4 0.01
338 14 0.04
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (331 bp):
AAACTATATAAATTATATAGTTGATATATGAACTATAGTTAAACTATATAAACTATAGTTGATAT
AAACATATGAACTATAGTTTACATATGAACTATATATATAAACTATATAGTTTACATATGAACTA
TATATATATAGTTTATTAGTGAACTATATAAACTATTTATATAGTATACACTATATACATAAGCT
ATAGTTTATATTTATATACTACATACTATAGTGATATATAAACTATATATTATATATATAAACTA
CATATACTATATAATATAATAACATATAAACTATATATAAAAACTATATACTATAGTTAACATTA
ATATAG
Found at i:9019856 original size:18 final size:18
Alignment explanation
Indices: 9019786--9019867 Score: 83
Period size: 18 Copynumber: 4.2 Consensus size: 18
9019776 ATATAAATTA
* *
9019786 TATAGTTGATATATGAAC
1 TATAGTTTACATATGAAC
*
9019804 TATAGTTTACATATAAAC
1 TATAGTTTACATATGAAC
9019822 TATAGTTGATATTTACATATGAAC
1 TATA---G---TTTACATATGAAC
9019846 TATAGTTTACATATGAAC
1 TATAGTTTACATATGAAC
9019864 TATA
1 TATA
9019868 TATATAAACT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
18 36 0.67
21 2 0.04
24 16 0.30
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (18 bp):
TATAGTTTACATATGAAC
Found at i:9019878 original size:31 final size:32
Alignment explanation
Indices: 9019838--9019906 Score: 104
Period size: 33 Copynumber: 2.2 Consensus size: 32
9019828 TGATATTTAC
*
9019838 ATATGAAC-TATAGTTTACATATGAACTATAT
1 ATATAAACATATAGTTTACATATGAACTATAT
*
9019869 ATATAAACTATATAGTTTACATATGAATTATAT
1 ATATAAAC-ATATAGTTTACATATGAACTATAT
9019902 ATATA
1 ATATA
9019907 TAGTTTATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
31 7 0.21
33 27 0.79
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (32 bp):
ATATAAACATATAGTTTACATATGAACTATAT
Found at i:9019921 original size:26 final size:26
Alignment explanation
Indices: 9019877--9019928 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
9019867 ATATATAAAC
*
9019877 TATATAGTTTACATATGAATTATATA
1 TATATAGTTTACATATGAACTATATA
*
9019903 TATATAGTTTA-TTAGTGAACTATATA
1 TATATAGTTTACATA-TGAACTATATA
9019929 AACTATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (26 bp):
TATATAGTTTACATATGAACTATATA
Found at i:9019951 original size:18 final size:18
Alignment explanation
Indices: 9019925--9019959 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9019915 TAGTGAACTA
*
9019925 TATAAACTATTTATATAG
1 TATAAACTATATATATAG
*
9019943 TATACACTATATATATA
1 TATAAACTATATATATA
9019960 AGCTATAGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.43
Consensus pattern (18 bp):
TATAAACTATATATATAG
Found at i:9027059 original size:24 final size:25
Alignment explanation
Indices: 9027006--9027074 Score: 74
Period size: 24 Copynumber: 2.8 Consensus size: 25
9026996 TACGAACTAG
*
9027006 AGTTTACATATAAACTATAGT-TGAT
1 AGTTTACATATGAACTATA-TATGAT
9027031 A-TTTACATATGAACTATATAT-AT
1 AGTTTACATATGAACTATATATGAT
*
9027054 AGTTTA-TTAGTGAACTATATA
1 AGTTTACATA-TGAACTATATA
9027075 AACTATTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
23 6 0.15
24 32 0.82
25 1 0.03
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (25 bp):
AGTTTACATATGAACTATATATGAT
Done.