Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008620.1 Hibiscus syriacus cultivar Beakdansim tig00111582_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13158977
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 53 of 64
Found at i:10748031 original size:2 final size:2
Alignment explanation
Indices: 10748024--10748049 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10748014 AATATTAAAA
10748024 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
10748050 TAAATTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10756640 original size:92 final size:90
Alignment explanation
Indices: 10756483--10756661 Score: 225
Period size: 92 Copynumber: 2.0 Consensus size: 90
10756473 AACTCTAACC
** * * * *
10756483 TTTTTATTAATTTTTGAATTATTATACGACCTTGTGGTAACCCAATATGGGGTATGATCTACATT
1 TTTTTATTAATTTTTGAATTATTATACGACCTTGCAGTAACCCAATACGGGGTACGACCCACATT
*
10756548 ATTA-TGGTTTGGACTCTATTAATCT
66 ATTACT-GTATGGACTCTATTAATCT
* * * *
10756573 TTTTTATTAATTTTTTTGAATTATTATACGACCTTGCAGTGACCCGATCCGGGGTACGACCCGCA
1 TTTTTATTAA--TTTTTGAATTATTATACGACCTTGCAGTAACCCAATACGGGGTACGACCCACA
10756638 TTATTACTGTATGGACTCTATTAA
64 TTATTACTGTATGGACTCTATTAA
10756662 CACTAACTTT
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
90 10 0.13
92 64 0.85
93 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (90 bp):
TTTTTATTAATTTTTGAATTATTATACGACCTTGCAGTAACCCAATACGGGGTACGACCCACATT
ATTACTGTATGGACTCTATTAATCT
Found at i:10759328 original size:2 final size:2
Alignment explanation
Indices: 10759321--10759369 Score: 66
Period size: 2 Copynumber: 25.5 Consensus size: 2
10759311 ATATTTATGA
*
10759321 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT -T TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
10759361 AT AC AT AT A
1 AT AT AT AT A
10759370 CACATAAATA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
1 2 0.05
2 40 0.95
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10759615 original size:923 final size:920
Alignment explanation
Indices: 10757829--10759674 Score: 3489
Period size: 923 Copynumber: 2.0 Consensus size: 920
10757819 TTCTTTCGTT
*
10757829 CCCAAATTTTAGGTGTGGTCAAATTGTTAGGGTTTTACTAGATGGGAATGTGCGTTAATTTCAAA
1 CCCAAATTTTAGGTGTGGTCAAATTGTTAGGGTTTTACTAAATGGGAATGTGCGTTAATTTCAAA
*
10757894 ATTACTGAAAGTAACTTTCTTATACGTCAAGACAGTCACTTCACGATAATTTTAAAATGAACGAA
66 ATTACTGAAAGTAACTTTCTTATACGTCAAGACAGTCACTTCACAATAATTTTAAAATGAACGAA
10757959 TGTTACCTTAGTCAAATTATTTCGATTTGGAGTCAAGAAATGCTCATGGGATATCATACATATTA
131 TGTTACCTTAGTCAAATTATTTCGATTTGGAGTCAAGAAATGCTCATGGGATATCATACATATTA
10758024 TTTGAAATTAACAATCTAAATGTATACACTAAATCACATAAAGATAAATAAAAACATCGAATAGA
196 TTTGAAATTAACAATCTAAATGTATACACTAAATCACATAAAGATAAATAAAAACATCGAATAGA
10758089 AACATATATGAAAAGAATATATACAAATGACGTATTAATAGATGCATATATGTATAAAAAAGGCT
261 AACATATATGAAAAGAATATATACAAATGACGTATTAATAGATGCATATATGTATAAAAAAGGCT
10758154 AAAAACATATTATGTATATATAAAGTCTCAAATATATTAATTACCTATGTATGTATATTATATGG
326 AAAAACATATTATGTATATATAAAGTCTCAAATATATTAATTACCTATGTATGTATATTATATGG
10758219 TATACGCATGCAATATGATAGAAAATATACATATAAATATATTTGCTACATATATGTAAATACAT
391 TATACGCATGCAATATGATAGAAAATATACATATAAATATATTTGCTACATATATGTAAATACAT
10758284 GAAAACATAACTATGGGAATAAAAAATATAACTTATATTTTTATATAATATATATATGTGTGTGT
456 GAAAACATAACTATGGGAATAAAAAATATAACTTATATTTTTATATAATATATATATGTGTGTGT
10758349 GCATACTTTATATTTTTACGCAAATGTTTATTTACACAATATTTATGAATATATATATATATATA
521 GCATACTTTATATTTTTACGCAAATGTTTATTTACACAATATTTATGAATATATATATATATATA
10758414 TTAATAAAACCCTATTTTTATATACTTAATATACACATAAATAAATAATAATTAATATTACAATC
586 TTAATAAAA--CTATTTTTATATAC-TAATATACACATAAATAAATAATAATTAATATTACAATC
10758479 TAAAGACATATAAATATAATTTTAAAAGGGGCTTGTAACAAATCTAATCAGGATAACAGGGACTA
648 TAAAGACATATAAATATAATTTTAAAAGGGGCTTGTAACAAATCTAATCAGGATAACAGGGACTA
10758544 AATATGCAAACTTATAAACATGATAGACTAAGACATAAATTAAATAAATTAATTATGCTTGGCAA
713 AATATGCAAACTTATAAACATGATAGACTAAGACATAAATTAAATAAATTAATTATGCTTGGCAA
10758609 ATAAGGATTAAATCATAATAAGGGCATCAATGTACAACGAGTGACTAAAATGTGAGATTTACATA
778 ATAAGGATTAAATCATAATAAGGGCATCAATGTACAACGAGTGACTAAAATGTGAGATTTACATA
* *
10758674 ATATCATGGTTATAGTTAAACATTAATAAAAATGGCATATCACATGGAATGGTGACTTAAATGTA
843 ATATCATGGTTATAGTTAAACATTAATAAAAATGACATATCACACGGAATGGTGACTTAAATGTA
*
10758739 TATATTGAAAATA
908 CATATTGAAAATA
*
10758752 CCCAAATTTTAGGTGTGGTCAAATTGTTAGGGTTTTACTAAATGGGAATGTGCTTTAATTTCAAA
1 CCCAAATTTTAGGTGTGGTCAAATTGTTAGGGTTTTACTAAATGGGAATGTGCGTTAATTTCAAA
*
10758817 ATTACTGAAAGTAACTTTTTTATACGTCAAGACAGTCACTTCACAATAATTTTAAAATGAACGAA
66 ATTACTGAAAGTAACTTTCTTATACGTCAAGACAGTCACTTCACAATAATTTTAAAATGAACGAA
*
10758882 TGTTATCTTAGTCAAATTATTTCGATTTGGAGTCAAGAAATGCTCATGGGATATCATACATATTA
131 TGTTACCTTAGTCAAATTATTTCGATTTGGAGTCAAGAAATGCTCATGGGATATCATACATATTA
*
10758947 TTTGAAATTAACAATCTAAATGTATACACTAAATCACATAAAGATAAATAAAAACATCTAATAGA
196 TTTGAAATTAACAATCTAAATGTATACACTAAATCACATAAAGATAAATAAAAACATCGAATAGA
*
10759012 AACATATATGAAAATAATATATACAAATGACGTATTAATAGATGCATATATGTATAAAAAAGGCT
261 AACATATATGAAAAGAATATATACAAATGACGTATTAATAGATGCATATATGTATAAAAAAGGCT
10759077 AAAAACATATTATGTATATATAAAGTCTCAAATATATTAATTACCTATGTATGTATATTATATGG
326 AAAAACATATTATGTATATATAAAGTCTCAAATATATTAATTACCTATGTATGTATATTATATGG
10759142 TATACGCATGCAATATGATAGAAAATATACATATAAATATATTTGCTACATATATGTAAATACAT
391 TATACGCATGCAATATGATAGAAAATATACATATAAATATATTTGCTACATATATGTAAATACAT
*
10759207 GAAAACATAACTATGGGAATAAAAAAATATAACTTATATTTTTATATAATATATATGTGTGTGTG
456 GAAAACATAACTATGGGAAT-AAAAAATATAACTTATATTTTTATATAATATATATATGTGTGTG
*
10759272 TGCATACTTTATATTTTTACGCAATTGTTTATTTACACAATATTTATGAATATATATATATATAT
520 TGCATACTTTATATTTTTACGCAAATGTTTATTTACACAATATTTATGAATATATATATATATAT
*
10759337 ATATATATATAA-TATATTTTATATA-TACATATACACATAAATAAATAATAATTAATATTACAA
585 AT-TA-ATAAAACTAT-TTTTATATACTA-ATATACACATAAATAAATAATAATTAATATTACAA
10759400 TCTAAAGACATATAAATATAATTTTAAAAGGGGCTTGTAACAAATCTAATCAGGATAACAGGGAC
646 TCTAAAGACATATAAATATAATTTTAAAAGGGGCTTGTAACAAATCTAATCAGGATAACAGGGAC
10759465 TAAATATGCAAACTTATAAACATGATAGACTAAGACATAAATTAAATAAATTAATTATGCTTGGC
711 TAAATATGCAAACTTATAAACATGATAGACTAAGACATAAATTAAATAAATTAATTATGCTTGGC
10759530 AAATAAGGATTAAATCATAATAAGGGCATCAATGTACAACGAGTGACTAAAATGTGAGATTTACA
776 AAATAAGGATTAAATCATAATAAGGGCATCAATGTACAACGAGTGACTAAAATGTGAGATTTACA
10759595 TAATATCATGGTTATAGTTAAACATTAATAAAAATGACATATCACACGGAATGGTGACTTAAATG
841 TAATATCATGGTTATAGTTAAACATTAATAAAAATGACATATCACACGGAATGGTGACTTAAATG
10759660 TACATATTGAAAATA
906 TACATATTGAAAATA
10759675 AAAGCTCAAA
Statistics
Matches: 905, Mismatches: 13, Indels: 10
0.98 0.01 0.01
Matches are distributed among these distances:
922 2 0.00
923 778 0.86
924 118 0.13
925 2 0.00
926 5 0.01
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (920 bp):
CCCAAATTTTAGGTGTGGTCAAATTGTTAGGGTTTTACTAAATGGGAATGTGCGTTAATTTCAAA
ATTACTGAAAGTAACTTTCTTATACGTCAAGACAGTCACTTCACAATAATTTTAAAATGAACGAA
TGTTACCTTAGTCAAATTATTTCGATTTGGAGTCAAGAAATGCTCATGGGATATCATACATATTA
TTTGAAATTAACAATCTAAATGTATACACTAAATCACATAAAGATAAATAAAAACATCGAATAGA
AACATATATGAAAAGAATATATACAAATGACGTATTAATAGATGCATATATGTATAAAAAAGGCT
AAAAACATATTATGTATATATAAAGTCTCAAATATATTAATTACCTATGTATGTATATTATATGG
TATACGCATGCAATATGATAGAAAATATACATATAAATATATTTGCTACATATATGTAAATACAT
GAAAACATAACTATGGGAATAAAAAATATAACTTATATTTTTATATAATATATATATGTGTGTGT
GCATACTTTATATTTTTACGCAAATGTTTATTTACACAATATTTATGAATATATATATATATATA
TTAATAAAACTATTTTTATATACTAATATACACATAAATAAATAATAATTAATATTACAATCTAA
AGACATATAAATATAATTTTAAAAGGGGCTTGTAACAAATCTAATCAGGATAACAGGGACTAAAT
ATGCAAACTTATAAACATGATAGACTAAGACATAAATTAAATAAATTAATTATGCTTGGCAAATA
AGGATTAAATCATAATAAGGGCATCAATGTACAACGAGTGACTAAAATGTGAGATTTACATAATA
TCATGGTTATAGTTAAACATTAATAAAAATGACATATCACACGGAATGGTGACTTAAATGTACAT
ATTGAAAATA
Found at i:10761064 original size:64 final size:65
Alignment explanation
Indices: 10760909--10761067 Score: 200
Period size: 64 Copynumber: 2.5 Consensus size: 65
10760899 AATTAAATTG
* * *
10760909 AACATCGAATGCATTTCATGCATCGATACA-CATACCATCACCGATGCACTGAGGATTTTATGAA
1 AACATCGAATGCATTTGATGCATCGATGCACCATACCATCACCGATGCACTCAGGATTTTATGAA
* * * *
10760973 AACATCGAATGCATTTGATGCATCGATGCACCA-GCCATACATCGATGCACTCTGGCTATTT-TG
1 AACATCGAATGCATTTGATGCATCGATGCACCATACCAT-CACCGATGCACTCAGGAT-TTTATG
10761036 -A
64 AA
*
10761037 AACATCGAATGCACTTGATGCATCGATGCAC
1 AACATCGAATGCATTTGATGCATCGATGCAC
10761068 TCTTAGTGCA
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
64 63 0.75
65 18 0.21
66 3 0.04
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (65 bp):
AACATCGAATGCATTTGATGCATCGATGCACCATACCATCACCGATGCACTCAGGATTTTATGAA
Found at i:10761067 original size:17 final size:19
Alignment explanation
Indices: 10761039--10761087 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
10761029 TATTTTGAAA
10761039 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
10761057 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
10761076 CACCGATGCACT
1 CATCGATGCACT
10761088 AAGGGTCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:10769582 original size:65 final size:63
Alignment explanation
Indices: 10769513--10769672 Score: 205
Period size: 65 Copynumber: 2.5 Consensus size: 63
10769503 AATTAAATTG
* *
10769513 AACATTGAATGCATTTCATGCATCGATGCACATACCATGCACCGATGCACTGAGGAT-TTTATGA
1 AACATCGAATGCATTTGATGCATCGATGCACA-ACCATGCACCGATGCACTGAGGATATTT-TG-
10769577 A
63 A
* * ** *
10769578 AACATCGAATGCATTTGATGCATCGATGCACCAGCCATGCATCGATGCACTTTGGCTATTTTGA
1 AACATCGAATGCATTTGATGCATCGATGCA-CAACCATGCACCGATGCACTGAGGATATTTTGA
*
10769642 AACATCGAATGCACTTGATGCATCGATGCAC
1 AACATCGAATGCATTTGATGCATCGATGCAC
10769673 TCTTAGTGCA
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
63 1 0.01
64 30 0.35
65 49 0.58
66 5 0.06
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (63 bp):
AACATCGAATGCATTTGATGCATCGATGCACAACCATGCACCGATGCACTGAGGATATTTTGA
Found at i:10769672 original size:17 final size:19
Alignment explanation
Indices: 10769644--10769692 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
10769634 TATTTTGAAA
10769644 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
10769662 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
10769681 CACCGATGCACT
1 CATCGATGCACT
10769693 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:10770894 original size:34 final size:35
Alignment explanation
Indices: 10770825--10770902 Score: 97
Period size: 34 Copynumber: 2.2 Consensus size: 35
10770815 ATTTTCACAA
* *
10770825 ATATACTATATATATTTATTTTTCAAACCACATATT
1 ATATA-TATATATATATATTATTCAAACCACATATT
10770861 ATATATATATATATATA-TATTCAAA-CACTATATT
1 ATATATATATATATATATTATTCAAACCAC-ATATT
*
10770895 CTATATAT
1 ATATATAT
10770903 TTCAAAACTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 3 0.08
34 19 0.50
35 11 0.29
36 5 0.13
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (35 bp):
ATATATATATATATATATTATTCAAACCACATATT
Found at i:10770902 original size:24 final size:22
Alignment explanation
Indices: 10770864--10770923 Score: 77
Period size: 22 Copynumber: 2.6 Consensus size: 22
10770854 ACATATTATA
10770864 TATATATATATATATATTCAAACAC
1 TATATAT-TATATAT-TTCAAA-AC
10770889 TATAT-TCTATATATTTCAAAAC
1 TATATAT-TATATATTTCAAAAC
10770911 TATATATTATATA
1 TATATATTATATA
10770924 CATATTTTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
22 13 0.39
23 7 0.21
24 8 0.24
25 5 0.15
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (22 bp):
TATATATTATATATTTCAAAAC
Found at i:10770972 original size:15 final size:17
Alignment explanation
Indices: 10770938--10770977 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
10770928 TTTTTCAAAC
*
10770938 TATATATATAGTATATA
1 TATATATATACTATATA
10770955 TATATATA-ACTATA-A
1 TATATATATACTATATA
10770970 TAT-TATAT
1 TATATATAT
10770978 TATAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 4 0.19
15 4 0.19
16 5 0.24
17 8 0.38
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (17 bp):
TATATATATACTATATA
Found at i:10770997 original size:15 final size:15
Alignment explanation
Indices: 10770979--10771024 Score: 58
Period size: 16 Copynumber: 3.1 Consensus size: 15
10770969 ATATTATATT
10770979 ATAAAATAAACCAAA
1 ATAAAATAAACCAAA
*
10770994 ATAAAATAAAACAAAA
1 ATAAAAT-AAACCAAA
*
10771010 ATAAACTAAA-CAAA
1 ATAAAATAAACCAAA
10771024 A
1 A
10771025 GGAAACTCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 4 0.15
15 10 0.37
16 13 0.48
ACGTcount: A:0.76, C:0.11, G:0.00, T:0.13
Consensus pattern (15 bp):
ATAAAATAAACCAAA
Found at i:10773290 original size:18 final size:19
Alignment explanation
Indices: 10773267--10773309 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
10773257 TTGACCGTTG
10773267 AATTTTAC-CAAAAAGTCA
1 AATTTTACTCAAAAAGTCA
*
10773285 AATTTT-CTGAAAAAGTCA
1 AATTTTACTCAAAAAGTCA
*
10773303 TATTTTA
1 AATTTTA
10773310 TGTTTTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (19 bp):
AATTTTACTCAAAAAGTCA
Found at i:10777421 original size:16 final size:17
Alignment explanation
Indices: 10777388--10777426 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
10777378 GGTCTTCATT
10777388 TTAATTTGAAATAATTTA
1 TTAATTTG-AATAATTTA
*
10777406 TTAATTTG-ATAGTTTA
1 TTAATTTGAATAATTTA
10777422 TTAAT
1 TTAAT
10777427 AATTTTTGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 12 0.60
18 8 0.40
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (17 bp):
TTAATTTGAATAATTTA
Found at i:10777837 original size:37 final size:37
Alignment explanation
Indices: 10777786--10778040 Score: 325
Period size: 37 Copynumber: 7.1 Consensus size: 37
10777776 TATATATAAA
*
10777786 ATTTTGAAAACATATATAATATATAGTTTTTGAAAAT
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
*
10777823 GTTTTGAAAACATATATATAATATATAGTTTTT-AAAAT
1 ATTTTG-AAA-ATATATATAATATATAGTTTTTGAAAAT
**
10777861 ATTTTGAAAATATATAT-ATATATAGTTTTAAAAAAT
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
10777897 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
*
10777934 A---T-----TATATAT-ATATATAGTTTTTGAAAAC
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
* *
10777962 ATTTTGAAAAAATATATAATATATAGGTTTTGAAAAT
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
* * *
10777999 ATTTTGAAAATGTATATATTATATAGTTTTTAAAAAT
1 ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
10778036 ATTTT
1 ATTTT
10778041 ATATATTATA
Statistics
Matches: 190, Mismatches: 15, Indels: 26
0.82 0.06 0.11
Matches are distributed among these distances:
28 19 0.10
29 7 0.04
31 1 0.01
34 1 0.01
35 12 0.06
36 36 0.19
37 80 0.42
38 13 0.07
39 21 0.11
ACGTcount: A:0.45, C:0.01, G:0.08, T:0.45
Consensus pattern (37 bp):
ATTTTGAAAATATATATAATATATAGTTTTTGAAAAT
Found at i:10777927 original size:26 final size:28
Alignment explanation
Indices: 10777898--10777960 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
10777888 TTAAAAAATA
10777898 TTTTGAAAATA-TATATA-ATATATAGT
1 TTTTGAAAATATTATATATATATATAGT
10777924 TTTTGAAAATATTATATATATATATAGT
1 TTTTGAAAATATTATATATATATATAGT
10777952 TTTTGAAAA
1 TTTTGAAAA
10777961 CATTTTGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 11 0.31
27 6 0.17
28 18 0.51
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (28 bp):
TTTTGAAAATATTATATATATATATAGT
Found at i:10777948 original size:65 final size:65
Alignment explanation
Indices: 10777871--10778001 Score: 217
Period size: 65 Copynumber: 2.0 Consensus size: 65
10777861 ATTTTGAAAA
* * *
10777871 TATATATATATATAGTTTTAAAAAATATTTTGAAAATATATATAATATATAGTTTTTGAAAATAT
1 TATATATATATATAGTTTTAAAAAACATTTTGAAAAAATATATAATATATAGGTTTTGAAAATAT
**
10777936 TATATATATATATAGTTTTTGAAAACATTTTGAAAAAATATATAATATATAGGTTTTGAAAATAT
1 TATATATATATATAGTTTTAAAAAACATTTTGAAAAAATATATAATATATAGGTTTTGAAAATAT
10778001 T
1 T
10778002 TTGAAAATGT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.47, C:0.01, G:0.08, T:0.45
Consensus pattern (65 bp):
TATATATATATATAGTTTTAAAAAACATTTTGAAAAAATATATAATATATAGGTTTTGAAAATAT
Found at i:10777977 original size:30 final size:28
Alignment explanation
Indices: 10777898--10777979 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 28
10777888 TTAAAAAATA
* *
10777898 TTTTGAAAATA-TAT-ATAATATATAGT
1 TTTTGAAAACATTATAAAAATATATAGT
* * *
10777924 TTTTGAAAATATTATATATATATATAGT
1 TTTTGAAAACATTATAAAAATATATAGT
*
10777952 TTTTGAAAACATTTTGAAAAAATATATA
1 TTTTGAAAACATTAT--AAAAATATATA
10777980 ATATATAGGT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 11 0.24
27 3 0.07
28 22 0.49
30 9 0.20
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.45
Consensus pattern (28 bp):
TTTTGAAAACATTATAAAAATATATAGT
Found at i:10778004 original size:102 final size:100
Alignment explanation
Indices: 10777824--10778052 Score: 329
Period size: 102 Copynumber: 2.3 Consensus size: 100
10777814 TTTGAAAATG
* * *
10777824 TTTTGAAAACA-TATATATAATATATAGTTTTTAAAATATTTTGAAAATATATATATATATAGTT
1 TTTTGAAAATATTATATAT-ATATATAGTTTTTAAAACATTTTGAAAAAATATATATATATAGTT
10777888 TTAAAAAATATTTTGAAAATATATATAATATATAGT
65 TTAAAAAATATTTTGAAAATATATATAATATATAGT
10777924 TTTTGAAAATATTATATATATATATAGTTTTTGAAAACATTTTGAAAAAATATATAATATATAGG
1 TTTTGAAAATATTATATATATATATAGTTTTT-AAAACATTTTGAAAAAATATAT-ATATATA-G
* * *
10777989 TTTT-GAAAATATTTTGAAAATGTATATATTATATAGT
63 TTTTAAAAAATATTTTGAAAATATATATAATATATAGT
* *
10778026 TTTTAAAAATATTTTATATAT-TATAGT
1 TTTTGAAAATATTATATATATATATAGT
10778053 ATATTATTTG
Statistics
Matches: 117, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
100 23 0.20
101 33 0.28
102 56 0.48
103 5 0.04
ACGTcount: A:0.45, C:0.01, G:0.07, T:0.46
Consensus pattern (100 bp):
TTTTGAAAATATTATATATATATATAGTTTTTAAAACATTTTGAAAAAATATATATATATAGTTT
TAAAAAATATTTTGAAAATATATATAATATATAGT
Found at i:10778060 original size:22 final size:22
Alignment explanation
Indices: 10778042--10778088 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
10778032 AAATATTTTA
*
10778042 TATATTATAGTATATTATTTGT
1 TATATTATAGTAAATTATTTGT
* *
10778064 TATATTATTGTAAATTATTTAT
1 TATATTATAGTAAATTATTTGT
10778086 TAT
1 TAT
10778089 TTTCATTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (22 bp):
TATATTATAGTAAATTATTTGT
Found at i:10778161 original size:13 final size:13
Alignment explanation
Indices: 10778145--10778182 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
10778135 CCAAATAGGG
10778145 AGTCCAAGATCCA
1 AGTCCAAGATCCA
* *
10778158 AGTCCAAGGTTCA
1 AGTCCAAGATCCA
10778171 AGTCCAA-ATCCA
1 AGTCCAAGATCCA
10778183 GAGGGGATGA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
12 3 0.14
13 18 0.86
ACGTcount: A:0.37, C:0.29, G:0.16, T:0.18
Consensus pattern (13 bp):
AGTCCAAGATCCA
Found at i:10781273 original size:19 final size:19
Alignment explanation
Indices: 10781240--10781290 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
10781230 GATCCTCATT
* *
10781240 TTAATTTGA-AATAATTTA
1 TTAATTTAATAATAATATA
10781258 TTAATTTAATAATAATATA
1 TTAATTTAATAATAATATA
*
10781277 TTAATTTATTAATA
1 TTAATTTAATAATA
10781291 CCTTTTGAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 8 0.28
19 21 0.72
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
TTAATTTAATAATAATATA
Found at i:10783084 original size:26 final size:25
Alignment explanation
Indices: 10783055--10783105 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
10783045 CACCAAGAAG
10783055 AGAGAATTATAAAGGAA-TTTCTATTA
1 AGAG-ATTATAAAGGAACTTT-TATTA
* *
10783081 AGAGTTTATAAATGAACTTTTATTA
1 AGAGATTATAAAGGAACTTTTATTA
10783106 TAAAAAGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.43, C:0.04, G:0.14, T:0.39
Consensus pattern (25 bp):
AGAGATTATAAAGGAACTTTTATTA
Found at i:10783530 original size:64 final size:63
Alignment explanation
Indices: 10783448--10783604 Score: 181
Period size: 64 Copynumber: 2.5 Consensus size: 63
10783438 TTCAGTGTGT
* * *
10783448 ATCGATGCACAGGAAGTGCATCGATGCACCCATTAAAAATGGAAACATCAAATGCAATTAGTGC
1 ATCGATGCATAGGAAGTGCATCGATGCACCCATT-AAAATGAAAACATCAAAGGCAATTAGTGC
* * ** * *
10783512 ATCGATGCATAAGG-AGTGCATCGATGCACCCCCTTAAAATGAAAACATCGAAGGTGATTTGTGT
1 ATCGATGCAT-AGGAAGTGCATCGATGCA-CCCATTAAAATGAAAACATCAAAGGCAATTAGTGC
* *
10783576 ATCGATGCATGGGTAGTGCATCGATGCAC
1 ATCGATGCATAGGAAGTGCATCGATGCAC
10783605 ATGTTAAAGA
Statistics
Matches: 80, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
63 3 0.04
64 69 0.86
65 8 0.10
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.23
Consensus pattern (63 bp):
ATCGATGCATAGGAAGTGCATCGATGCACCCATTAAAATGAAAACATCAAAGGCAATTAGTGC
Found at i:10783637 original size:20 final size:22
Alignment explanation
Indices: 10783592--10783649 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 22
10783582 GCATGGGTAG
10783592 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TGTT-AAGAA
10783616 TGCATCGATGCACTG-T-AGAA
1 TGCATCGATGCACTGTTAAGAA
*
10783636 TGTATCGATGCACT
1 TGCATCGATGCACT
10783650 TCAAGGGGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 17 0.52
22 1 0.03
23 2 0.06
24 13 0.39
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:10784862 original size:245 final size:242
Alignment explanation
Indices: 10784435--10784918 Score: 905
Period size: 245 Copynumber: 2.0 Consensus size: 242
10784425 CGAACATATA
10784435 AGATAAGCTAGATGGGAAAGATACATATGCTTAAATAAAATGATATATGGGTTGTATGATAGAAA
1 AGATAAGCTAGATGGGAAAGATACATATGCTTAAATAAAATGATATATGGGTTGTATGATAGAAA
*
10784500 TCTAAGGAGTCATATTAGAAAGTTATAGGTATTATATGAACTGAATTAGGTAAATAGATTAGATT
66 TCTAAGGAGTCATATTAGAAAGTTATAGATATTATATGAACTGAATTAGGTAAATAGATTAGATT
10784565 AGTATATAAATGAAATAATAAAAGTGATATATGTTTATAAGTATGACAGAGGTGATATGATCTAG
131 AGTATATAAATGAAATAATAAAAGTGATATATGTTTATAAGTATGACAGAGGTGATATGATCTAG
10784630 GTGAATATCATAGAATAAGGTGTAAGCTATATGATATAATATAAATG
196 GTGAATATCATAGAATAAGGTGTAAGCTATATGATATAATATAAATG
10784677 AGATAAGCTAGATGGGAAAGATACATATGCTTAAATAAAATTATGATATATGGGTTGTATGATAG
1 AGATAAGCTAGATGGGAAAGATACATATGCTTAAAT-AAA--ATGATATATGGGTTGTATGATAG
*
10784742 AAATCTAAGGAGTCGTATTAGAAAGTTATAGATATTATATGAACTGAATTAGGTAAATAGATTAG
63 AAATCTAAGGAGTCATATTAGAAAGTTATAGATATTATATGAACTGAATTAGGTAAATAGATTAG
*
10784807 ATTAGTATATAAATGAAATAATAGAAGTGATATATGTTTATAAGTATGACAGAGGTGATATGATC
128 ATTAGTATATAAATGAAATAATAAAAGTGATATATGTTTATAAGTATGACAGAGGTGATATGATC
*
10784872 TAGGTGAATATCATAGAATAAGGTGTAAGTTATATGATATAATATAA
193 TAGGTGAATATCATAGAATAAGGTGTAAGCTATATGATATAATATAA
10784919 GTTATTTTAT
Statistics
Matches: 235, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
242 36 0.15
243 3 0.01
245 196 0.83
ACGTcount: A:0.43, C:0.04, G:0.21, T:0.32
Consensus pattern (242 bp):
AGATAAGCTAGATGGGAAAGATACATATGCTTAAATAAAATGATATATGGGTTGTATGATAGAAA
TCTAAGGAGTCATATTAGAAAGTTATAGATATTATATGAACTGAATTAGGTAAATAGATTAGATT
AGTATATAAATGAAATAATAAAAGTGATATATGTTTATAAGTATGACAGAGGTGATATGATCTAG
GTGAATATCATAGAATAAGGTGTAAGCTATATGATATAATATAAATG
Found at i:10785019 original size:2 final size:2
Alignment explanation
Indices: 10785012--10785045 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
10785002 AGGAAAGATG
10785012 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10785046 GATAAGACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10785470 original size:23 final size:23
Alignment explanation
Indices: 10785437--10785504 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
10785427 AACCTTATAT
10785437 GGCACTTCGGTGCATTTCTACGC
1 GGCACTTCGGTGCATTTCTACGC
* *
10785460 GGCACTACGGTGCATTTCTACGT
1 GGCACTTCGGTGCATTTCTACGC
* *
10785483 GGCACTTCGATGCATTTATACG
1 GGCACTTCGGTGCATTTCTACG
10785505 AGTTGTGGTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.18, C:0.26, G:0.25, T:0.31
Consensus pattern (23 bp):
GGCACTTCGGTGCATTTCTACGC
Found at i:10785693 original size:28 final size:28
Alignment explanation
Indices: 10785640--10785693 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
10785630 TATGAATGGT
* * *
10785640 ATTATATGATTTATATGATGATATGTGG
1 ATTATATGATTTAAATGATCAAATGTGG
10785668 ATTATATGA-TTAAATGAGTCAAATGT
1 ATTATATGATTTAAATGA-TCAAATGT
10785694 TGGTTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.37, C:0.02, G:0.19, T:0.43
Consensus pattern (28 bp):
ATTATATGATTTAAATGATCAAATGTGG
Found at i:10787636 original size:36 final size:36
Alignment explanation
Indices: 10787596--10787674 Score: 133
Period size: 36 Copynumber: 2.2 Consensus size: 36
10787586 TCGATTGGTC
* *
10787596 TACCTAATTGACCAATCATTTCCATTAATGTATATT
1 TACCTAATTAACCAATCATTTCCATTAATGCATATT
10787632 TACCTAATTAACCAATCATTTCCATTAATGCATATT
1 TACCTAATTAACCAATCATTTCCATTAATGCATATT
10787668 TA-CTAAT
1 TACCTAAT
10787675 CCCTAAATTG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 5 0.12
36 36 0.88
ACGTcount: A:0.35, C:0.20, G:0.04, T:0.41
Consensus pattern (36 bp):
TACCTAATTAACCAATCATTTCCATTAATGCATATT
Found at i:10796196 original size:36 final size:38
Alignment explanation
Indices: 10796148--10796219 Score: 112
Period size: 36 Copynumber: 1.9 Consensus size: 38
10796138 CAAAAACTTA
*
10796148 TCTCACTTGAGATTGTTTTTCTT-AAA-ACAAATTTCG
1 TCTCACTTGAGATAGTTTTTCTTGAAACACAAATTTCG
*
10796184 TCTCGCTTGAGATAGTTTTTCTTGAAACACAAATTT
1 TCTCACTTGAGATAGTTTTTCTTGAAACACAAATTT
10796220 TAAGATCGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 21 0.66
37 3 0.09
38 8 0.25
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.43
Consensus pattern (38 bp):
TCTCACTTGAGATAGTTTTTCTTGAAACACAAATTTCG
Found at i:10796218 original size:102 final size:100
Alignment explanation
Indices: 10796036--10796585 Score: 617
Period size: 102 Copynumber: 5.4 Consensus size: 100
10796026 AGCAAAGATC
* * *
10796036 AAATCTTATCTCACTTGAGATTGTTTTTCTTCAAAAAAAAATTTAGTCTCGCTTGAGACAATTTC
1 AAAT-TTATCTCACTTGAGATTGTTTTTCTT--AAAACAAATTTCGTCTCGCTTGAGAC-ATTTT
*
10796101 CCTTGAAACACAAATTTTAAGATCGTTTCACTCAAAACAA
62 CCTTGAAACACAAATTTTAA-ATCGTTTCACTCGAAACAA
* * *
10796141 AAACTTATCTCACTTGAGATTGTTTTTCTTAAAACAAATTTCGTCTCGCTTGAGATAGTTTTTCT
1 AAATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAATTTCGTCTCGCTTGAGACA-TTTTCCT
10796206 TGAAACACAAATTTTAAGATCGTTTCACTCGAAACAA
65 TGAAACACAAATTTTAA-ATCGTTTCACTCGAAACAA
* * * * *
10796243 AAATTTATCTCACTTGAGTTTATTTTTCTTAAAACCAATTTCGTCTCGCTTAAGACAATTTCCTT
1 AAATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAATTTCGTCTCGCTTGAGACATTTTCCTT
* *
10796308 GAAACATAAATTTTGAAATAGTTTCACTCGAAACAA
66 GAAACACAAATTTT-AAATCGTTTCACTCGAAACAA
* * *
10796344 ACATTTATCTCACTTGAGATTG-TTTTCTTAAAAC-AATTAT-GTCTCGCTAGAGATATTTTCCC
1 AAATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAATT-TCGTCTCGCTTGAGACATTTT-CC
* **
10796406 CTGAAACACAAATTTTAAATTTTTTTCACTCGAAAC-A
64 TTGAAACACAAATTTTAAA-TCGTTTCACTCGAAACAA
* * * ** * *
10796443 AAATTTATTTCATTTGAGATTATTTTTTCTT-AAA-ATTTTTTGTCTCGCTTGAGACAGTTTCCC
1 AAATTTATCTCACTTGAGATT-GTTTTTCTTAAAACAAATTTCGTCTCGCTTGAGACA-TTTTCC
* * *
10796506 TTGAAACACCAATTTTGAAATTGTTTCACTCGAAACCA
64 TTGAAACACAAATTTT-AAATCGTTTCACTCGAAACAA
* * * * *
10796544 AATTTTATCTCACATGAGATAGCTTTTCTTGAAACAAATTTC
1 AAATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAATTTC
10796586 TTTTCGTCCA
Statistics
Matches: 381, Mismatches: 50, Indels: 31
0.82 0.11 0.07
Matches are distributed among these distances:
99 42 0.11
100 99 0.26
101 90 0.24
102 121 0.32
104 26 0.07
105 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.39
Consensus pattern (100 bp):
AAATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAATTTCGTCTCGCTTGAGACATTTTCCTT
GAAACACAAATTTTAAATCGTTTCACTCGAAACAA
Found at i:10797389 original size:27 final size:27
Alignment explanation
Indices: 10797330--10797417 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
10797320 GATGAAAAAG
* *
10797330 AAAAAATGAGAAAATTGAAAATTGAAAG-
1 AAAAAA-GAGAAAATTGAAAAAT-AGAGT
10797358 AAAAAAGA-AGAAATTGAATAAA-AGAGT
1 AAAAAAGAGA-AAATTGAA-AAATAGAGT
*
10797385 GAAAAAGAGAAAATTGAAAAATAGAGT
1 AAAAAAGAGAAAATTGAAAAATAGAGT
10797412 AAAAAA
1 AAAAAA
10797418 AAATAAATAA
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
26 7 0.14
27 35 0.69
28 9 0.18
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.15
Consensus pattern (27 bp):
AAAAAAGAGAAAATTGAAAAATAGAGT
Found at i:10800280 original size:36 final size:36
Alignment explanation
Indices: 10800212--10800280 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
10800202 CCTTTTTATA
* *
10800212 TTATTTTATTTTGTTTTATTATTTTACTTTTTTCCT
1 TTATTTTATTTTATTTTATTAATTTACTTTTTTCCT
* *
10800248 TTATTTTGTTTTATTTT-TTAATTTCCTCTTTTT
1 TTATTTTATTTTATTTTATTAATTTACT-TTTTT
10800281 TGAGATTAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 8 0.29
36 20 0.71
ACGTcount: A:0.13, C:0.09, G:0.03, T:0.75
Consensus pattern (36 bp):
TTATTTTATTTTATTTTATTAATTTACTTTTTTCCT
Found at i:10806113 original size:17 final size:18
Alignment explanation
Indices: 10806081--10806115 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
10806071 TGACCGGTCA
10806081 CGACCCGACCCGTTGACC
1 CGACCCGACCCGTTGACC
*
10806099 CGACCCGA-TCGTTGACC
1 CGACCCGACCCGTTGACC
10806116 GTTGACCGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.46, G:0.23, T:0.14
Consensus pattern (18 bp):
CGACCCGACCCGTTGACC
Found at i:10806173 original size:29 final size:29
Alignment explanation
Indices: 10806131--10806216 Score: 136
Period size: 29 Copynumber: 3.0 Consensus size: 29
10806121 CCGGTGTTAT
*
10806131 TCTGGTAAATAATTTGGTTTTAGTGCTAA
1 TCTGGTAAATAATTCGGTTTTAGTGCTAA
*
10806160 TCTGGTAAATAATTCGGTTTTGGTGCTAA
1 TCTGGTAAATAATTCGGTTTTAGTGCTAA
* *
10806189 TCTGGTAAATAATTCAGTTTTTGTGCTA
1 TCTGGTAAATAATTCGGTTTTAGTGCTA
10806217 TTCTAGTGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (29 bp):
TCTGGTAAATAATTCGGTTTTAGTGCTAA
Found at i:10806277 original size:29 final size:29
Alignment explanation
Indices: 10806210--10806277 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
10806200 ATTCAGTTTT
* * *
10806210 TGTGCTATTCTAGTGATTAATTTAAAATG
1 TGTGCTATTTTAGTAATTAATTTAAAAAG
* * *
10806239 GGTGCTATTTTGGTAATTATTTTAAAAAG
1 TGTGCTATTTTAGTAATTAATTTAAAAAG
10806268 TGTGCTATTT
1 TGTGCTATTT
10806278 GTGTAAAATG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.47
Consensus pattern (29 bp):
TGTGCTATTTTAGTAATTAATTTAAAAAG
Found at i:10811154 original size:569 final size:569
Alignment explanation
Indices: 10810069--10811207 Score: 2116
Period size: 569 Copynumber: 2.0 Consensus size: 569
10810059 AAGAGGAAAG
*
10810069 AAAGGATTTTAAAATCGACACAACTCTTTTGGCTGAACCAAGACAAAACTTGATAGTCTCACTTC
1 AAAGGATGTTAAAATCGACACAACTCTTTTGGCTGAACCAAGACAAAACTTGATAGTCTCACTTC
*
10810134 AAGAATACAGAGATGTGTTCGCTTGGTCATATCAAAAGATGTCAGGACTAGACACAGATATAGTA
66 AAGAATACAAAGATGTGTTCGCTTGGTCATATCAAAAGATGTCAGGACTAGACACAGATATAGTA
*
10810199 GTCCATGAACTACCTATCAAACTAGAATGCAAACCCGTGCAACAAAAGCTAAGGAGAATGCGACT
131 GTCCATGAACTACCTATCAAACTAGAATGCAAACCCATGCAACAAAAGCTAAGGAGAATGCGACT
*
10810264 TGAGATGCTCCTTAAGATTAAAGAAGAAGTCAAGAAGCAATTCGATGCTGGTTTCCTTCAACTGG
196 TGAGATGCTCCTTAAGATCAAAGAAGAAGTCAAGAAGCAATTCGATGCTGGTTTCCTTCAACTGG
10810329 CCAAGTATCTGGAGTGGGTGGCCAACATAGTGTCGGTTCCAAAGAAAGACGGAAAAGTGCGCATG
261 CCAAGTATCTGGAGTGGGTGGCCAACATAGTGTCGGTTCCAAAGAAAGACGGAAAAGTGCGCATG
*
10810394 TGTGTTGATTATCGGGACCTTAACAAGGTAAGCCCTAAAGATAACTTTCCTCTGCCGCACAGAGA
326 TGTGTTGATTATCGGGACCTTAACAAGGTAAGCCCTAAAGATAAATTTCCTCTGCCGCACAGAGA
* *
10810459 CACTTTGGTGGATAATACAACCGGGAACACATTCTTCTCGTTCATGGACGGATTCTCAGGGCATA
391 CACTTTGGTGGACAATACAACCGGGAACACATTCTTCTCGTTCATGGACAGATTCTCAGGGCATA
10810524 ACCAGATTAAGATGCATCCTGAAGACATAGAAAAGACCACATTCATCACGATGTAAGGAACCTTC
456 ACCAGATTAAGATGCATCCTGAAGACATAGAAAAGACCACATTCATCACGATGTAAGGAACCTTC
*
10810589 TGCTACAAAGTGATGTCCTTCGGGTTGAGGAATACTGGGGCAACATATT
521 TGCTACAAAGTGATGTCCTTCGGGTTGAGGAATACTGGGGAAACATATT
*
10810638 AAAGGATGTTAAAATCGACACAACTCTTTTGGCTGAAGCAAGACAAAACTTGATAGTCTCACTTC
1 AAAGGATGTTAAAATCGACACAACTCTTTTGGCTGAACCAAGACAAAACTTGATAGTCTCACTTC
*
10810703 AAGAATACAAAGATGTGTTCGCTTGGTCATATCAAGAGATGTCAGGACTAGACACAGATATAGTA
66 AAGAATACAAAGATGTGTTCGCTTGGTCATATCAAAAGATGTCAGGACTAGACACAGATATAGTA
10810768 GTCCATGAACTACCTATCAAACTAGAATGCAAACCCATGCAACAAAAGCTAAGGAGAATGCGACT
131 GTCCATGAACTACCTATCAAACTAGAATGCAAACCCATGCAACAAAAGCTAAGGAGAATGCGACT
10810833 TGAGATGCTCCTTAAGATCAAAGAAGAAGTCAAGAAGCAATTCGATGCTGGTTTCCTTCAACTGG
196 TGAGATGCTCCTTAAGATCAAAGAAGAAGTCAAGAAGCAATTCGATGCTGGTTTCCTTCAACTGG
* * * *
10810898 CCAAGTATCTGGAGTGGGTGTCCAACATAGTGTCGGTTTCAAAGAAAGACGGGAAAGTGTGCATG
261 CCAAGTATCTGGAGTGGGTGGCCAACATAGTGTCGGTTCCAAAGAAAGACGGAAAAGTGCGCATG
10810963 TGTGTTGATTATCGGGACCTTAACAAGGTAAGCCCTAAAGATAAATTTCCTCTGCCGCACAGAGA
326 TGTGTTGATTATCGGGACCTTAACAAGGTAAGCCCTAAAGATAAATTTCCTCTGCCGCACAGAGA
* *
10811028 CACTTTGGTGGACAATACAATCGGGAACACATTCTTCTCGTTCATGGACAGATTCTCAGGGTATA
391 CACTTTGGTGGACAATACAACCGGGAACACATTCTTCTCGTTCATGGACAGATTCTCAGGGCATA
* *
10811093 ACCAGATTAAGATGCATCCTGAAGACATGGAAAAGACCACATTCATCACGATGTGAGGAACCTTC
456 ACCAGATTAAGATGCATCCTGAAGACATAGAAAAGACCACATTCATCACGATGTAAGGAACCTTC
10811158 TGCTACAAAGTGATGTCCTTCGGGTTGAGGAATACTGGGGAAACATATT
521 TGCTACAAAGTGATGTCCTTCGGGTTGAGGAATACTGGGGAAACATATT
10811207 A
1 A
10811208 GAGAGCTATG
Statistics
Matches: 552, Mismatches: 18, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
569 552 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (569 bp):
AAAGGATGTTAAAATCGACACAACTCTTTTGGCTGAACCAAGACAAAACTTGATAGTCTCACTTC
AAGAATACAAAGATGTGTTCGCTTGGTCATATCAAAAGATGTCAGGACTAGACACAGATATAGTA
GTCCATGAACTACCTATCAAACTAGAATGCAAACCCATGCAACAAAAGCTAAGGAGAATGCGACT
TGAGATGCTCCTTAAGATCAAAGAAGAAGTCAAGAAGCAATTCGATGCTGGTTTCCTTCAACTGG
CCAAGTATCTGGAGTGGGTGGCCAACATAGTGTCGGTTCCAAAGAAAGACGGAAAAGTGCGCATG
TGTGTTGATTATCGGGACCTTAACAAGGTAAGCCCTAAAGATAAATTTCCTCTGCCGCACAGAGA
CACTTTGGTGGACAATACAACCGGGAACACATTCTTCTCGTTCATGGACAGATTCTCAGGGCATA
ACCAGATTAAGATGCATCCTGAAGACATAGAAAAGACCACATTCATCACGATGTAAGGAACCTTC
TGCTACAAAGTGATGTCCTTCGGGTTGAGGAATACTGGGGAAACATATT
Found at i:10814008 original size:6 final size:6
Alignment explanation
Indices: 10813987--10814045 Score: 50
Period size: 6 Copynumber: 9.5 Consensus size: 6
10813977 CTAAATTGAA
* *
10813987 AAAAAT AAAAAG --AAAG AAAAAGG AAAAAGAG AAAAAAG AAAGAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAA-G -AAAA-AG -AAAAAG AAAAAG AAAAAG
10814037 AAAAAG AAA
1 AAAAAG AAA
10814046 GAATGTGGGT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
4 4 0.09
6 27 0.60
7 3 0.07
8 10 0.22
9 1 0.02
ACGTcount: A:0.80, C:0.00, G:0.19, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:10814012 original size:11 final size:10
Alignment explanation
Indices: 10813993--10814048 Score: 52
Period size: 9 Copynumber: 6.2 Consensus size: 10
10813983 TGAAAAAAAT
10813993 AAAAAGAAAG
1 AAAAAGAAAG
10814003 AAAAAG---G
1 AAAAAGAAAG
*
10814010 AAAAAGAGA-
1 AAAAAGAAAG
10814019 AAAAAGAAAG
1 AAAAAGAAAG
*
10814029 -AGAA-AAAG
1 AAAAAGAAAG
10814037 AAAAAGAAAG
1 AAAAAGAAAG
10814047 AA
1 AA
10814049 TGTGGGTTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
7 7 0.19
8 4 0.11
9 14 0.38
10 12 0.32
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:10814013 original size:22 final size:21
Alignment explanation
Indices: 10813987--10814048 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 21
10813977 CTAAATTGAA
10813987 AAAAATAAAAAGAAAGAAAAAGG
1 AAAAA-AAAAAGAAAGAAAAA-G
* *
10814010 AAAAAGAGAAA-AAAGAAAGAG
1 AAAAA-AAAAAGAAAGAAAAAG
10814031 AAAAAGAAAAAGAAAGAA
1 AAAAA-AAAAAGAAAGAA
10814049 TGTGGGTTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 11 0.32
22 14 0.41
23 9 0.26
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAAGAAAGAAAAAG
Found at i:10814019 original size:19 final size:20
Alignment explanation
Indices: 10813993--10814045 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
10813983 TGAAAAAAAT
10813993 AAAA-AGAAAGAAAAAG-GA
1 AAAAGAGAAAGAAAAAGAGA
*
10814011 AAAAGAGAAAAAAGAAAGAGA
1 AAAAGAGAAAGAA-AAAGAGA
*
10814032 AAAAGAAAAAGAAA
1 AAAAGAGAAAGAAA
10814046 GAATGTGGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 4 0.14
19 7 0.24
20 5 0.17
21 13 0.45
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (20 bp):
AAAAGAGAAAGAAAAAGAGA
Found at i:10814022 original size:26 final size:27
Alignment explanation
Indices: 10813993--10814043 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
10813983 TGAAAAAAAT
*
10813993 AAAAAGAAAGA-AAAAGGAAAAAGAGA
1 AAAAAGAAAGAGAAAAAGAAAAAGAGA
10814019 AAAAAGAAAGAGAAAAAGAAAAAGA
1 AAAAAGAAAGAGAAAAAGAAAAAGA
10814044 AAGAATGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (27 bp):
AAAAAGAAAGAGAAAAAGAAAAAGAGA
Found at i:10815645 original size:29 final size:30
Alignment explanation
Indices: 10815612--10815668 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
10815602 GGTTGTAAAT
10815612 TTTAATATTT-TATATTTTAATC-CTATTAC
1 TTTAAT-TTTATATATTTTAATCACTATTAC
* *
10815641 TTTAATTTTATATGTTTTAGTCACTATT
1 TTTAATTTTATATATTTTAATCACTATT
10815669 TAATTGCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 3 0.12
29 16 0.67
30 5 0.21
ACGTcount: A:0.28, C:0.09, G:0.04, T:0.60
Consensus pattern (30 bp):
TTTAATTTTATATATTTTAATCACTATTAC
Found at i:10815774 original size:2 final size:2
Alignment explanation
Indices: 10815757--10815790 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
10815747 TATATTATTC
* *
10815757 AT AT AA AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10815791 TTGTTTAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:10815973 original size:16 final size:18
Alignment explanation
Indices: 10815952--10815988 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
10815942 TCTTAGGAAA
10815952 ATTTA-TTATTTTT-AAT
1 ATTTATTTATTTTTCAAT
10815968 ATTTATTTATTTTTCAAT
1 ATTTATTTATTTTTCAAT
10815986 ATT
1 ATT
10815989 AAGAAATGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 8 0.42
18 6 0.32
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTTATTTATTTTTCAAT
Found at i:10816147 original size:120 final size:118
Alignment explanation
Indices: 10815963--10816180 Score: 267
Period size: 120 Copynumber: 1.8 Consensus size: 118
10815953 TTTATTATTT
* * * * * **
10815963 TTAATATTTATTTATTTTTCAATATTAAGAAATGACAGTCTTAAAGTAATTGGATGTTCATTTTC
1 TTAATATTTATTTATTTTTCAATATTAAGAAAAGACAGTCTTAAAGCAACTAGAAGCCCATTTTC
* * *
10816028 TGATATTTTTAAATAAATGAATAT-TTTTTATTATTTTTAGATAAATATTTTA
66 TGATATTTCTAAATAAATAAATATCTTCTTATTATTTTTAGATAAATATTTTA
* * * *
10816080 TTAATATTTATTTATTTATTTTAATATTAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGCCCTTT
1 TTAATATTTATTTA-TT-TTTCAATATTAAGAAAAGA-CAGTCTTAAAGCAACTAGAAGCCCATT
*
10816145 TTCTGATATTTCTAAGTAAATAAATATCTTCTTATT
63 TTCTGATATTTCTAAATAAATAAATATCTTCTTATT
10816181 TAAAAATATA
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
117 14 0.17
118 2 0.02
119 17 0.21
120 42 0.51
121 7 0.09
ACGTcount: A:0.35, C:0.08, G:0.09, T:0.48
Consensus pattern (118 bp):
TTAATATTTATTTATTTTTCAATATTAAGAAAAGACAGTCTTAAAGCAACTAGAAGCCCATTTTC
TGATATTTCTAAATAAATAAATATCTTCTTATTATTTTTAGATAAATATTTTA
Found at i:10821942 original size:73 final size:73
Alignment explanation
Indices: 10821779--10822089 Score: 401
Period size: 73 Copynumber: 4.2 Consensus size: 73
10821769 CTATTTCCAA
* * * * * * *
10821779 CATCCGTAAGCCCTGCAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGACCTACAGAGCATGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGA--TCTT--A
*
10821844 AACCCTCAGGGT
62 AAGCCTCAGGGT
* * *
10821856 CATCTGTAAGACCTACAGAGCATGATGTTCTCAAAAAGTCTTCAGGATCTTTTTGATCTTAAAGC
1 CATCTGTAAGACCTACAGAGCATGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATCTTAAAGC
10821921 CTCAGGGT
66 CTCAGGGT
* ** *
10821929 CATCTGTAAGACCTACAGTGCATGATACTTTCAAAAAGCCTTCATGAGCTTTTTGATCTTAAAGC
1 CATCTGTAAGACCTACAGAGCATGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATCTTAAAGC
10821994 CTCAGGGT
66 CTCAGGGT
*
10822002 CATCTATAAGACCTACA-ATGCATGATGTTTTCAAAAAGCCTTCCA-GAGCTTTTTGATCTTAAA
1 CATCTGTAAGACCTACAGA-GCATGATGTTTTCAAAAAGCCTT-CAGGAGCTTTTTGATCTTAAA
10822065 GCCTCAGGGT
64 GCCTCAGGGT
*
10822075 CATCTGTAAGCCCTA
1 CATCTGTAAGACCTA
10822090 TAGTGCAAGA
Statistics
Matches: 208, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
73 156 0.75
74 2 0.01
75 3 0.01
77 47 0.23
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (73 bp):
CATCTGTAAGACCTACAGAGCATGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATCTTAAAGC
CTCAGGGT
Found at i:10822359 original size:112 final size:116
Alignment explanation
Indices: 10822157--10822591 Score: 382
Period size: 112 Copynumber: 3.6 Consensus size: 116
10822147 CAATATTTCC
* *
10822157 AGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGGAAAAGTTCATAATGAGAAGAACTT
1 AGAA-AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAAAAGTTCATAATGAGAAGAACTT
* * * * * *
10822222 GTTCAACCTTTT-CTTCAAATTTAT-C-AA-CTGATGGAT-CAGCGTTGCCAA
65 GTTCAACCTTTTGCTT-GACTCTATACAAAGCAGATAGATACAACGTTGCCAA
* *
10822270 AGAAAGTTCATAATGAGAAGAATTTATCTGAAGAGGAAGAAAAAGTTCATAATGAGAAGAGCTTG
1 AGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAAAAGTTCATAATGAGAAGAACTTG
* * * * *
10822335 TTCAACCTTTTGCATGACTCTATCACAGAAGGAGATAGATCAACACCAACTTTTCCAG
66 TTCAACCTTTTGCTTGACTCTAT-ACA-AAGCAGATAGAT----A-CAACGTTGCCAA
* *
10822393 AGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAA-AAGGAAGTTCATAATGAAGAACAACT
1 AGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAA-AAAGTTCATAATG-AGAAGAACT
* * * * *
10822457 TGTTCAACCTTTTGCTTGACTCCATTTCCAAAAAG-AGATAGAGCAACAGAGCTATTTCC-A
64 TGTTCAACCTTTTGCTTGACT-C-TAT--ACAAAGCAGATAGA--TACA-A-C-GTTGCCAA
* * * * *
10822517 GGTGAAGTTCATAATGAGAAGAACTCATCTGAAGATGAAGAAAAAGTTCATAATGATAAGAACTT
1 AG-AAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAAAAGTTCATAATGAGAAGAACTT
10822582 GTTCAACCTT
65 GTTCAACCTT
10822592 GCATTGATTC
Statistics
Matches: 266, Mismatches: 32, Indels: 37
0.79 0.10 0.11
Matches are distributed among these distances:
112 73 0.27
113 6 0.02
114 1 0.00
116 2 0.01
117 6 0.02
122 4 0.02
123 59 0.22
124 47 0.18
125 58 0.22
126 7 0.03
127 3 0.01
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.26
Consensus pattern (116 bp):
AGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAAAAGTTCATAATGAGAAGAACTTG
TTCAACCTTTTGCTTGACTCTATACAAAGCAGATAGATACAACGTTGCCAA
Found at i:10822537 original size:125 final size:123
Alignment explanation
Indices: 10822270--10822591 Score: 427
Period size: 125 Copynumber: 2.6 Consensus size: 123
10822260 GCGTTGCCAA
* *
10822270 AGAAAGTTCATAATGAGAAGAATTTATCTGAAGAGGAAGAAAAAGTTCATAATGAGAAGAGCTTG
1 AGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAAAAGTTCATAATGAGAAGAACTTG
* * *
10822335 TTCAACCTTTTGCATGACTCTATCACAGAAGGAGATAGATCAACACCAACTTTTCCAG
66 TTCAACCTTTTGCATGACTCTATCACAAAAAGAGATAGAGCAACACCAACTTTTCCAG
* *
10822393 AGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAA-AAGGAAGTTCATAATGAAGAACAACT
1 AGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAA-AAAGTTCATAATG-AGAAGAACT
* * * *
10822457 TGTTCAACCTTTTGCTTGACTCCATTTC-CAAAAAGAGATAGAGCAACA-GAGCTATTTCCAG
64 TGTTCAACCTTTTGCATGACT-C-TATCACAAAAAGAGATAGAGCAACACCAACT-TTTCCAG
* * * *
10822518 -GTGAAGTTCATAATGAGAAGAACTCATCTGAAGATGAAGAAAAAGTTCATAATGATAAGAACTT
1 AG-AAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAAAAGTTCATAATGAGAAGAACTT
10822582 GTTCAACCTT
65 GTTCAACCTT
10822592 GCATTGATTC
Statistics
Matches: 175, Mismatches: 17, Indels: 13
0.85 0.08 0.06
Matches are distributed among these distances:
122 2 0.01
123 49 0.28
124 49 0.28
125 70 0.40
126 5 0.03
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.25
Consensus pattern (123 bp):
AGAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAAAAGTTCATAATGAGAAGAACTTG
TTCAACCTTTTGCATGACTCTATCACAAAAAGAGATAGAGCAACACCAACTTTTCCAG
Found at i:10822759 original size:139 final size:138
Alignment explanation
Indices: 10822510--10822865 Score: 448
Period size: 139 Copynumber: 2.6 Consensus size: 138
10822500 CAACAGAGCT
** * *
10822510 ATTTCCAGGTGAAGTTCATAATGAGAAGAACTCATCTGAAGATGAAGAAA-AAGTTCATAATGAT
1 ATTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAA-AAAGAAGTTCATAATGAG
* * * * * *
10822574 AAGAACTTGTTCAACCTTGCATTGATTCATCTCCTATGGAATTGAATGAA-AGAAGAACCTCATT
65 AAGAATTTGTTCAACCTTACATTAATTCATCACATATGGAATTGAATCAACA-AA-AACCTCATT
* *
10822638 TGAGGATCAAT
128 TGAAGATCAAC
* * *
10822649 ATTTTCAG-AGAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAAAAGAAGTTCATAATAAG
1 ATTTCCAGAAG-AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAAAGAAGTTCATAATGAG
* * ** *
10822713 AAGAATTTGTTCAACCTTACCTTAATTCATCACATATGGAGTTGAATCAACAAATCCCTCTTTTG
65 AAGAATTTGTTCAACCTTACATTAATTCATCACATATGGAATTGAATCAACAAAAACCTCATTTG
*
10822778 AAGATCAGC
130 AAGATCAAC
* *
10822787 ATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAAAAGAAGTTCATAATGAGA
1 ATTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAAAGAAGTTCATAATGAGA
10822852 AGAATTTGTTCAAC
66 AGAATTTGTTCAAC
10822866 TTTTTGCTAG
Statistics
Matches: 189, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
138 89 0.47
139 99 0.52
140 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (138 bp):
ATTTCCAGAAGAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAAAGAAGTTCATAATGAGA
AGAATTTGTTCAACCTTACATTAATTCATCACATATGGAATTGAATCAACAAAAACCTCATTTGA
AGATCAAC
Found at i:10823155 original size:39 final size:40
Alignment explanation
Indices: 10823095--10823174 Score: 126
Period size: 39 Copynumber: 2.0 Consensus size: 40
10823085 AATTTTTACC
*
10823095 CGAGCAGCCCCCTCCACGCATCATTTCCAGCAGCTTCCAG
1 CGAGCAGCCCCCTCCACGCATCAGTTCCAGCAGCTTCCAG
* *
10823135 CGAGCAG-CCCCTCCATGCATCAGTTGCAGCAGCTTCCAG
1 CGAGCAGCCCCCTCCACGCATCAGTTCCAGCAGCTTCCAG
10823174 C
1 C
10823175 ATTGCCAGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
39 30 0.81
40 7 0.19
ACGTcount: A:0.20, C:0.42, G:0.20, T:0.17
Consensus pattern (40 bp):
CGAGCAGCCCCCTCCACGCATCAGTTCCAGCAGCTTCCAG
Found at i:10824322 original size:29 final size:30
Alignment explanation
Indices: 10824289--10824345 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
10824279 GGTTGTAAAT
10824289 TTTAATATTT-TATATTTTAATC-CTATTAC
1 TTTAAT-TTTATATATTTTAATCACTATTAC
* *
10824318 TTTAATTTTATATGTTTTAGTCACTATT
1 TTTAATTTTATATATTTTAATCACTATT
10824346 TAATTGCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 3 0.12
29 16 0.67
30 5 0.21
ACGTcount: A:0.28, C:0.09, G:0.04, T:0.60
Consensus pattern (30 bp):
TTTAATTTTATATATTTTAATCACTATTAC
Found at i:10824447 original size:2 final size:2
Alignment explanation
Indices: 10824434--10824467 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
10824424 TATATTTTTC
*
10824434 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10824468 TTGTTTAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:10824867 original size:120 final size:118
Alignment explanation
Indices: 10824640--10824868 Score: 275
Period size: 120 Copynumber: 1.9 Consensus size: 118
10824630 ATTATTATTT
* *
10824640 TTAATATTTATTTATTTTTCAATATTAAGAAAGGACAGTCTTAAAGTAACTGAATGTCCATTTTA
1 TTAATATTTATTTATTTTTCAATATTAAGAAAGGACAGTCTTAAAGCAACTGAATGCCCATTTTA
* * ** *
10824705 TGATATTTTTAAATAAATAAATATTTTTTTATTATTTTTAGATAAATGTTTTA
66 TGATATTTTTAAATAAATAAATATTTATTTATAAAATATAGATAAATGTTTTA
* * * *
10824758 TTAATATTTATTTATTTTTTTAATATTAAGAAAAGTG-CTGTCTTAAAGCACCTAGAA-GCCCTT
1 TTAATATTTATTTA-TTTTTCAATATTAAG-AAAG-GACAGTCTTAAAGCAACT-GAATGCCCAT
* *
10824821 TTTCTGATATTTTTAAGTAAATAAATATCTTATTTA-AAAATATAGATA
62 TTTATGATATTTTTAAATAAATAAATAT-TTATTTATAAAATATAGATA
10824869 TTAATATATT
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
118 14 0.15
119 14 0.15
120 55 0.59
121 10 0.11
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.47
Consensus pattern (118 bp):
TTAATATTTATTTATTTTTCAATATTAAGAAAGGACAGTCTTAAAGCAACTGAATGCCCATTTTA
TGATATTTTTAAATAAATAAATATTTATTTATAAAATATAGATAAATGTTTTA
Found at i:10827028 original size:27 final size:27
Alignment explanation
Indices: 10826997--10827065 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
10826987 CAACACACAA
*
10826997 AAACACAT-AAGAAATCACACGAAGAGG
1 AAACAC-TCAAGAAATAACACGAAGAGG
10827024 AAACACTCAAGAAATAACACGAAGAGG
1 AAACACTCAAGAAATAACACGAAGAGG
**
10827051 AAATGCTCAAGAAAT
1 AAACACTCAAGAAAT
10827066 CAAAGCATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.03
27 37 0.97
ACGTcount: A:0.55, C:0.17, G:0.17, T:0.10
Consensus pattern (27 bp):
AAACACTCAAGAAATAACACGAAGAGG
Found at i:10828032 original size:26 final size:29
Alignment explanation
Indices: 10827989--10828062 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 29
10827979 TCCTTCAAAA
* *
10827989 TTTTATTTTCTATTTTTTTGTTCGTTTC-TGT
1 TTTTATTTTC-A--TTTTTGTTCATTCCATGT
*
10828020 TTTT-TTTT-ATTTTAGTTCATTCCATGT
1 TTTTATTTTCATTTTTGTTCATTCCATGT
10828047 TTTTATTTTCATTTTT
1 TTTTATTTTCATTTTT
10828063 ATCTTATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
26 11 0.31
27 7 0.19
28 5 0.14
29 5 0.14
30 4 0.11
31 4 0.11
ACGTcount: A:0.11, C:0.09, G:0.07, T:0.73
Consensus pattern (29 bp):
TTTTATTTTCATTTTTGTTCATTCCATGT
Found at i:10828102 original size:21 final size:21
Alignment explanation
Indices: 10828052--10828104 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 21
10828042 CATGTTTTTA
*
10828052 TTTTCATTT-TTATCTTATTT
1 TTTTCATTTATTATCTTACTT
** *
10828072 TTTTGTTTTATTATTTTACTT
1 TTTTCATTTATTATCTTACTT
*
10828093 TTTTCCTTTATT
1 TTTTCATTTATT
10828105 GTGTTTTATT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.75
Consensus pattern (21 bp):
TTTTCATTTATTATCTTACTT
Found at i:10833935 original size:23 final size:22
Alignment explanation
Indices: 10833861--10833938 Score: 95
Period size: 21 Copynumber: 3.5 Consensus size: 22
10833851 CACCTAATAA
10833861 TGCATCGATGCATCCTTGAATG
1 TGCATCGATGCATCCTTGAATG
* * *
10833883 TGCATCGATACA-CCATGAAGG
1 TGCATCGATGCATCCTTGAATG
*
10833904 TGCACCGATGCATGCCTTGAATG
1 TGCATCGATGCAT-CCTTGAATG
*
10833927 TGAATCGATGCA
1 TGCATCGATGCA
10833939 CAAGGTCATG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
21 17 0.38
22 11 0.24
23 17 0.38
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCATCCTTGAATG
Found at i:10835966 original size:25 final size:24
Alignment explanation
Indices: 10835921--10835970 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 24
10835911 ATTTGGATGC
10835921 TTGGTTGATTTAACTTATTATATAT
1 TTGGTTGATTTAACTTATTAT-TAT
10835946 TTGGTTTGATTTTAACTTTATTATT
1 TTGG-TTGA-TTTAAC-TTATTATT
10835971 TTGAGCTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 4 0.18
26 4 0.18
27 7 0.32
28 7 0.32
ACGTcount: A:0.24, C:0.04, G:0.12, T:0.60
Consensus pattern (24 bp):
TTGGTTGATTTAACTTATTATTAT
Found at i:10836113 original size:2 final size:2
Alignment explanation
Indices: 10836106--10836136 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10836096 TAGCAGCTTA
10836106 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10836137 GCAAAACCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10836744 original size:64 final size:65
Alignment explanation
Indices: 10836632--10836756 Score: 191
Period size: 64 Copynumber: 1.9 Consensus size: 65
10836622 GAATGCATTT
*
10836632 CATGCATCGATGCACTAAGGATTTTATGAAAACATCGAATGCATTTGATGCATCGATGCACCGGC
1 CATGCATCGATGCACTAAGGATTTTATGAAAACATCGAATGCACTTGATGCATCGATGCACCGGC
** *
10836697 CATGCATCGATGCACTCTGGCTATTT-TG-AAACATCGAATGCACTTGATGCATCGATGCAC
1 CATGCATCGATGCACTAAGGAT-TTTATGAAAACATCGAATGCACTTGATGCATCGATGCAC
10836757 TCTTAGTGCA
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
64 31 0.56
65 21 0.38
66 3 0.05
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (65 bp):
CATGCATCGATGCACTAAGGATTTTATGAAAACATCGAATGCACTTGATGCATCGATGCACCGGC
Found at i:10836756 original size:17 final size:19
Alignment explanation
Indices: 10836728--10836776 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
10836718 TATTTTGAAA
10836728 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
10836746 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
10836765 CACCGATGCACT
1 CATCGATGCACT
10836777 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:10838379 original size:29 final size:29
Alignment explanation
Indices: 10838319--10838379 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
10838309 TGTCCTTTTC
** * *
10838319 TTTTATTTTGATTTGGTCTCACTATTTTA
1 TTTTATTTCAATTTGGTCCCACTATTTAA
10838348 TTTTATTTCAATTTGGTCACCACT-TTTAA
1 TTTTATTTCAATTTGGTC-CCACTATTTAA
10838377 TTT
1 TTT
10838380 GTTATTACTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 23 0.85
30 4 0.15
ACGTcount: A:0.20, C:0.13, G:0.08, T:0.59
Consensus pattern (29 bp):
TTTTATTTCAATTTGGTCCCACTATTTAA
Found at i:10840568 original size:11 final size:11
Alignment explanation
Indices: 10840552--10840579 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
10840542 AAGGAATAAC
10840552 AATAATAAAAA
1 AATAATAAAAA
10840563 AATAATAAAAA
1 AATAATAAAAA
10840574 AATAAT
1 AATAAT
10840580 TTAATATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
AATAATAAAAA
Found at i:10844329 original size:13 final size:13
Alignment explanation
Indices: 10844311--10844335 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10844301 AGAGTGAATA
10844311 TAAGGATGGGAGT
1 TAAGGATGGGAGT
10844324 TAAGGATGGGAG
1 TAAGGATGGGAG
10844336 GACTGGTGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.48, T:0.20
Consensus pattern (13 bp):
TAAGGATGGGAGT
Found at i:10846623 original size:21 final size:21
Alignment explanation
Indices: 10846597--10846649 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
10846587 CATAACAGGG
10846597 GGTATCGATACCCCTTCAAAA
1 GGTATCGATACCCCTTCAAAA
*
10846618 GGTATC-AGTACCCCTTCAAAG
1 GGTATCGA-TACCCCTTCAAAA
10846639 GGTATCGATAC
1 GGTATCGATAC
10846650 TTCCTTTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 1 0.03
21 27 0.93
22 1 0.03
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (21 bp):
GGTATCGATACCCCTTCAAAA
Found at i:10846812 original size:22 final size:22
Alignment explanation
Indices: 10846787--10846831 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
10846777 AATGTTTGAG
*
10846787 CAGTCATAGGGGTATTGATACC
1 CAGTCATAGGGGTATCGATACC
10846809 CAGTCATAGGGGTATCGATACC
1 CAGTCATAGGGGTATCGATACC
10846831 C
1 C
10846832 TGGTATGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (22 bp):
CAGTCATAGGGGTATCGATACC
Found at i:10847105 original size:21 final size:19
Alignment explanation
Indices: 10847081--10847137 Score: 80
Period size: 21 Copynumber: 2.9 Consensus size: 19
10847071 ATGTTTAATG
10847081 AAAAAGATACCAATTGTTT
1 AAAAAGATACCAATTGTTT
10847100 ACAAAAGGATACCAATTG-TT
1 A-AAAA-GATACCAATTGTTT
*
10847120 AAAAATATACCAATTGTT
1 AAAAAGATACCAATTGTT
10847138 GGAAAATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
18 10 0.29
19 6 0.18
20 7 0.21
21 11 0.32
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (19 bp):
AAAAAGATACCAATTGTTT
Found at i:10847129 original size:18 final size:18
Alignment explanation
Indices: 10847081--10847137 Score: 78
Period size: 18 Copynumber: 3.0 Consensus size: 18
10847071 ATGTTTAATG
10847081 AAAAAGATACCAATTGTTT
1 AAAAAGATACCAATTG-TT
10847100 ACAAAAGGATACCAATTGTT
1 A-AAAA-GATACCAATTGTT
*
10847120 AAAAATATACCAATTGTT
1 AAAAAGATACCAATTGTT
10847138 GGAAAATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 12 0.34
19 5 0.14
20 7 0.20
21 11 0.31
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (18 bp):
AAAAAGATACCAATTGTT
Found at i:10847143 original size:19 final size:18
Alignment explanation
Indices: 10847081--10847147 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 18
10847071 ATGTTTAATG
*
10847081 AAAAAGATACCAATTGTTT
1 AAAAATATACCAATTG-TT
*
10847100 ACAAAAGGATACCAATTGTT
1 A-AAAA-TATACCAATTGTT
10847120 AAAAATATACCAATTGTT
1 AAAAATATACCAATTGTT
*
10847138 GGAAAATATA
1 -AAAAATATA
10847148 TGAAAATGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
18 12 0.28
19 13 0.30
20 7 0.16
21 11 0.26
ACGTcount: A:0.49, C:0.10, G:0.12, T:0.28
Consensus pattern (18 bp):
AAAAATATACCAATTGTT
Found at i:10847973 original size:22 final size:21
Alignment explanation
Indices: 10847933--10847973 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
10847923 AATTTGAGCC
*
10847933 TTCATGGGGTATTGATACCCA
1 TTCATGGGGTATCGATACCCA
*
10847954 TTCATAGGGGTATCGGTACC
1 TTCAT-GGGGTATCGATACC
10847974 TCTTAATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.32
Consensus pattern (21 bp):
TTCATGGGGTATCGATACCCA
Found at i:10848216 original size:21 final size:19
Alignment explanation
Indices: 10848187--10848243 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 19
10848177 ATGTTTAATG
10848187 AAAAAGATACCAATTGTTT
1 AAAAAGATACCAATTGTTT
*
10848206 ACAAAATGATATCAATTG-TT
1 A-AAAA-GATACCAATTGTTT
*
10848226 AAAAAAATACCAATTGTT
1 AAAAAGATACCAATTGTT
10848244 ACCAATTGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
18 9 0.28
19 6 0.19
20 7 0.22
21 10 0.31
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.32
Consensus pattern (19 bp):
AAAAAGATACCAATTGTTT
Found at i:10848239 original size:18 final size:18
Alignment explanation
Indices: 10848187--10848244 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 18
10848177 ATGTTTAATG
10848187 AAAAAGATACCAATTGTTT
1 AAAAAGATACCAATTG-TT
*
10848206 ACAAAATGATATCAATTGTT
1 A-AAAA-GATACCAATTGTT
*
10848226 AAAAAAATACCAATTGTT
1 AAAAAGATACCAATTGTT
10848244 A
1 A
10848245 CCAATTGTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 12 0.35
19 5 0.15
20 7 0.21
21 10 0.29
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.31
Consensus pattern (18 bp):
AAAAAGATACCAATTGTT
Found at i:10855262 original size:23 final size:23
Alignment explanation
Indices: 10855232--10855293 Score: 124
Period size: 23 Copynumber: 2.7 Consensus size: 23
10855222 CCCCCCTTGA
10855232 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCCTTTGAAG
10855255 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCCTTTGAAG
10855278 GGGAACCGATTCCCCC
1 GGGAACCGATTCCCCC
10855294 CACAGGGGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.21, C:0.34, G:0.26, T:0.19
Consensus pattern (23 bp):
GGGAACCGATTCCCCCTTTGAAG
Found at i:10855302 original size:21 final size:20
Alignment explanation
Indices: 10855232--10855315 Score: 69
Period size: 23 Copynumber: 3.9 Consensus size: 20
10855222 CCCCCCTTGA
*
10855232 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCC---CAAG
*
10855255 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCC---CAAG
10855278 GGGAACCGATTCCCCCCACAG
1 GGGAACCGATTCCCCCCA-AG
* *
10855299 GGGAATCGATACCCCCC
1 GGGAACCGATTCCCCCC
10855316 TGGGGTTCTG
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
20 1 0.02
21 17 0.30
23 39 0.68
ACGTcount: A:0.23, C:0.36, G:0.25, T:0.17
Consensus pattern (20 bp):
GGGAACCGATTCCCCCCAAG
Found at i:10860072 original size:22 final size:22
Alignment explanation
Indices: 10860019--10860072 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
10860009 TATAATTTAA
*
10860019 TATCAGTACCCATGCATAGGAG
1 TATCGGTACCCATGCATAGGAG
* * * *
10860041 TATTGATACCCATTCATAGGGG
1 TATCGGTACCCATGCATAGGAG
10860063 TATCGGTACC
1 TATCGGTACC
10860073 TCTTAATATT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (22 bp):
TATCGGTACCCATGCATAGGAG
Found at i:10863261 original size:34 final size:32
Alignment explanation
Indices: 10863217--10863280 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 32
10863207 GGAGCCTTGG
*
10863217 GGTATTGATACCCAGGCAGGGGTATCGGTACCTA
1 GGTATGGATACCCA--CAGGGGTATCGGTACCTA
*
10863251 GGTATGGATACCCATAGGGGTATCGGTACC
1 GGTATGGATACCCACAGGGGTATCGGTACC
10863281 CTTTTTGCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 15 0.54
34 13 0.46
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.23
Consensus pattern (32 bp):
GGTATGGATACCCACAGGGGTATCGGTACCTA
Found at i:10863280 original size:18 final size:17
Alignment explanation
Indices: 10863234--10863282 Score: 52
Period size: 18 Copynumber: 3.0 Consensus size: 17
10863224 ATACCCAGGC
10863234 AGGGGTATCGGTA-CCT
1 AGGGGTATCGGTACCCT
10863250 A--GGTAT-GGATACCCAT
1 AGGGGTATCGG-TACCC-T
10863266 AGGGGTATCGGTACCCT
1 AGGGGTATCGGTACCCT
10863283 TTTTGCATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 11
0.71 0.00 0.29
Matches are distributed among these distances:
13 2 0.07
14 7 0.26
15 2 0.07
16 3 0.11
17 1 0.04
18 10 0.37
19 2 0.07
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.24
Consensus pattern (17 bp):
AGGGGTATCGGTACCCT
Found at i:10863548 original size:2 final size:2
Alignment explanation
Indices: 10863539--10863664 Score: 58
Period size: 2 Copynumber: 66.5 Consensus size: 2
10863529 ATAAAACAAT
* *
10863539 TA TA -A TA TA TA TA TA TA TA TA TA -A TA TG TA TA TA TA -A TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * ** *
10863578 TA CA T- TA TA CTA -A TG CA TA CG T- TA TA AA TA -A GTA TA TA CT-
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA
*
10863618 TA T- TA TA TA TA TA CT- TT TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10863659 TA -A TA T
1 TA TA TA T
10863665 GTATGATGAA
Statistics
Matches: 93, Mismatches: 16, Indels: 30
0.67 0.12 0.22
Matches are distributed among these distances:
1 11 0.12
2 77 0.83
3 5 0.05
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (2 bp):
TA
Found at i:10865679 original size:65 final size:64
Alignment explanation
Indices: 10865481--10865690 Score: 214
Period size: 65 Copynumber: 3.2 Consensus size: 64
10865471 TGCACTAAGA
* * * *
10865481 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCC-AGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATATCCTAG-GTGCATCGATGCATGGTTG
* * *
10865545 GGGCATCGATGCATCAAATACATTCGATGTTTTC-ATAAAATCCTCA-GTGCATCGATGCATGGT
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCAAT-ATATCCT-AGGTGCATCGATGCATGGT
10865608 AT-
63 -TG
* * *
10865610 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTATTCTATGGTGCATCGATGCATGGATT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATATCCTA-GGTGCATCGATGCATGG-TT
10865674 G
64 G
* *
10865675 GTGCACCGGTGCATCA
1 GTGCATCGATGCATCA
10865691 CTTTGAAAAA
Statistics
Matches: 120, Mismatches: 16, Indels: 19
0.77 0.10 0.12
Matches are distributed among these distances:
62 1 0.01
63 7 0.06
64 46 0.38
65 64 0.53
66 1 0.01
67 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAATATATCCTAGGTGCATCGATGCATGGTTG
Found at i:10873765 original size:18 final size:19
Alignment explanation
Indices: 10873742--10873799 Score: 73
Period size: 21 Copynumber: 3.0 Consensus size: 19
10873732 CAACAATTGG
10873742 TAACAATTGGTAT-TTTTT
1 TAACAATTGGTATCTTTTT
*
10873760 TAACAATTGATATCATTTTGT
1 TAACAATTGGTATC-TTTT-T
*
10873781 AAACAATTGGTATCTTTTT
1 TAACAATTGGTATCTTTTT
10873800 CATTAAACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 12 0.35
19 1 0.03
20 8 0.24
21 13 0.38
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.50
Consensus pattern (19 bp):
TAACAATTGGTATCTTTTT
Found at i:10874869 original size:18 final size:19
Alignment explanation
Indices: 10874836--10874896 Score: 70
Period size: 18 Copynumber: 3.2 Consensus size: 19
10874826 AACATTTTCA
*
10874836 TATATTTTCCAACAATTGG
1 TATATTTTCTAACAATTGG
10874855 TATATTTT-TAACAATTGG
1 TATATTTTCTAACAATTGG
* *
10874873 TATCCTTTTGTAAACAATTGG
1 TAT-ATTTTCT-AACAATTGG
10874894 TAT
1 TAT
10874897 CGTTTTCATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
18 12 0.32
19 12 0.32
20 1 0.03
21 12 0.32
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.46
Consensus pattern (19 bp):
TATATTTTCTAACAATTGG
Found at i:10874890 original size:21 final size:19
Alignment explanation
Indices: 10874846--10874902 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 19
10874836 TATATTTTCC
10874846 AACAATTGGTAT-ATTTTT
1 AACAATTGGTATCATTTTT
*
10874864 AACAATTGGTATCCTTTTGT
1 AACAATTGGTATCATTTT-T
*
10874884 AAACAATTGGTATCGTTTT
1 -AACAATTGGTATCATTTT
10874903 CATTAAACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 12 0.35
19 4 0.12
20 1 0.03
21 17 0.50
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (19 bp):
AACAATTGGTATCATTTTT
Found at i:10875336 original size:21 final size:21
Alignment explanation
Indices: 10875312--10875365 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
10875302 AACAAAGGAA
10875312 GTACCGATACCCTTTGAAGGG
1 GTACCGATACCCTTTGAAGGG
* *
10875333 GTACTGATACCTTTTGAAGGG
1 GTACCGATACCCTTTGAAGGG
*
10875354 GTATCGATACCC
1 GTACCGATACCC
10875366 CCTGTTATGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (21 bp):
GTACCGATACCCTTTGAAGGG
Found at i:10877637 original size:13 final size:13
Alignment explanation
Indices: 10877619--10877643 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10877609 TCCACCAGTC
10877619 CTCCCATCCTTAA
1 CTCCCATCCTTAA
10877632 CTCCCATCCTTA
1 CTCCCATCCTTA
10877644 TATTCACTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.48, G:0.00, T:0.32
Consensus pattern (13 bp):
CTCCCATCCTTAA
Found at i:10881385 original size:10 final size:10
Alignment explanation
Indices: 10881370--10881395 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
10881360 AACATATTAA
10881370 ATTATTTTTT
1 ATTATTTTTT
10881380 ATTATTTTTT
1 ATTATTTTTT
10881390 ATTATT
1 ATTATT
10881396 GTTATTCCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (10 bp):
ATTATTTTTT
Found at i:10885235 original size:18 final size:17
Alignment explanation
Indices: 10885181--10885229 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
10885171 TTGGACCCTT
* *
10885181 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
10885199 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
10885217 AGTGCATTCGATG
1 AGTGCA-TCGATG
10885230 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:10885338 original size:64 final size:64
Alignment explanation
Indices: 10885202--10885339 Score: 165
Period size: 64 Copynumber: 2.2 Consensus size: 64
10885192 GCACTAAGAG
* * ***
10885202 TGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGCCTG
1 TGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGGCAAA
* *
10885266 TGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGATGCAT-G-AA
1 TGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGCCACAGTGCATCGATGCATGGCAA
10885328 A
64 A
10885329 TGCATTCGATG
1 TGCA-TCGATG
10885340 TTCAATTTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
63 4 0.06
64 34 0.53
65 23 0.36
66 3 0.05
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (64 bp):
TGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGGCAAA
Found at i:10885827 original size:2 final size:2
Alignment explanation
Indices: 10885820--10885915 Score: 192
Period size: 2 Copynumber: 48.0 Consensus size: 2
10885810 AAGGTTTTGC
10885820 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10885862 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10885904 TA TA TA TA TA TA
1 TA TA TA TA TA TA
10885916 GATTAAGCTG
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 94 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10886086 original size:25 final size:24
Alignment explanation
Indices: 10886054--10886103 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 24
10886044 TTAAGCTCAA
10886054 AATAATAAAGTTAAAATCAAACCAAAT
1 AATAAT-AAGTT-AAATC-AACCAAAT
10886081 ATATAATAAGTTAAATCAACCAA
1 A-ATAATAAGTTAAATCAACCAA
10886104 GCATCCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 6 0.27
26 5 0.23
27 6 0.27
28 5 0.23
ACGTcount: A:0.60, C:0.12, G:0.04, T:0.24
Consensus pattern (24 bp):
AATAATAAGTTAAATCAACCAAAT
Found at i:10886521 original size:21 final size:21
Alignment explanation
Indices: 10886497--10886540 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
10886487 GTGCCAGAGG
* *
10886497 AGGAGGAGCACGAGAAGATCT
1 AGGAGCAGCACGAGAAGAACT
* *
10886518 AGGAGCAGCTCGTGAAGAACT
1 AGGAGCAGCACGAGAAGAACT
10886539 AG
1 AG
10886541 CTCCCGAAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.36, T:0.11
Consensus pattern (21 bp):
AGGAGCAGCACGAGAAGAACT
Found at i:10888147 original size:21 final size:22
Alignment explanation
Indices: 10888092--10888169 Score: 95
Period size: 21 Copynumber: 3.5 Consensus size: 22
10888082 CATGACCTTG
*
10888092 TGCATCGATTCACATTCAAGGCA
1 TGCATCGATGCACATTCAAGG-A
* * *
10888115 TGCATCGGTGCACCTTCATGG-
1 TGCATCGATGCACATTCAAGGA
*
10888136 TGTATCGATGCACATTCAAGGA
1 TGCATCGATGCACATTCAAGGA
10888158 TGCATCGATGCA
1 TGCATCGATGCA
10888170 TTATTAGGTG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
21 17 0.38
22 11 0.24
23 17 0.38
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (22 bp):
TGCATCGATGCACATTCAAGGA
Found at i:10888189 original size:42 final size:43
Alignment explanation
Indices: 10888102--10888189 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 43
10888092 TGCATCGATT
* *
10888102 CACATTCAAGGCATGCATCGGTGCACCTTCATGGTGTATCGATG
1 CACATTCAAGGCATGCATCGATGCA-CTTCATGGTGTATCAATG
10888146 CACATTCAAGG-ATGCATCGATGCA-TT-ATTAGGTGTATCAATG
1 CACATTCAAGGCATGCATCGATGCACTTCA-T-GGTGTATCAATG
10888188 CA
1 CA
10888190 TTAAGCACAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
40 1 0.03
41 3 0.08
42 13 0.32
43 12 0.30
44 11 0.28
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (43 bp):
CACATTCAAGGCATGCATCGATGCACTTCATGGTGTATCAATG
Found at i:10890825 original size:22 final size:21
Alignment explanation
Indices: 10890783--10890822 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10890773 GAGTCTATTT
*
10890783 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
10890804 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
10890823 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:10892789 original size:17 final size:18
Alignment explanation
Indices: 10892767--10892802 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
10892757 GTGCACTAAG
10892767 AGTGCA-TCGATGCTTCA
1 AGTGCATTCGATGCTTCA
*
10892784 AGTGCATTCGATGTTTCA
1 AGTGCATTCGATGCTTCA
10892802 A
1 A
10892803 AATAGCCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (18 bp):
AGTGCATTCGATGCTTCA
Found at i:10896171 original size:21 final size:22
Alignment explanation
Indices: 10896129--10896177 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
10896119 TCAAATCTTT
*
10896129 CTTTTTCAAAATCTTTAATTTTG
1 CTTTTTCAAAATC-TCAATTTTG
*
10896152 GTTTTTCAAAATC-CAATTTTG
1 CTTTTTCAAAATCTCAATTTTG
10896173 CTTTT
1 CTTTT
10896178 AAAAGAAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 11 0.48
23 12 0.52
ACGTcount: A:0.24, C:0.14, G:0.06, T:0.55
Consensus pattern (22 bp):
CTTTTTCAAAATCTCAATTTTG
Found at i:10896703 original size:23 final size:23
Alignment explanation
Indices: 10896671--10896715 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
10896661 AATGTCAACA
* * *
10896671 TCTTCTTCTTCTTGTTTTTCTTT
1 TCTTCATCTTCTTCTTGTTCTTT
10896694 TCTTCATCTTCTTCTTGTTCTT
1 TCTTCATCTTCTTCTTGTTCTT
10896716 CCTCCTTTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.02, C:0.24, G:0.04, T:0.69
Consensus pattern (23 bp):
TCTTCATCTTCTTCTTGTTCTTT
Found at i:10898475 original size:2 final size:2
Alignment explanation
Indices: 10898464--10898562 Score: 68
Period size: 2 Copynumber: 51.5 Consensus size: 2
10898454 AGTATAAAAC
* *
10898464 AT AT -T AT AT AT AT AT AT AT AT AT AT AT A- AA AGT AT AA AGT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT
* * *
10898506 A- AGT AT AT AT AT GT AT AA AT AT AT -T A- AT AT AA AT -T AT -T
1 AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
10898544 AA AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
10898563 AATACATTAA
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
1 7 0.09
2 66 0.87
3 3 0.04
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (2 bp):
AT
Found at i:10898528 original size:53 final size:50
Alignment explanation
Indices: 10898430--10898536 Score: 135
Period size: 53 Copynumber: 2.1 Consensus size: 50
10898420 TGTGTGTACT
*
10898430 TATATATATAAAGTATAAAGTATAAGTATAAAACATATTATATATATATATA
1 TATATATATAAAGTATAAAGTATAAGTATAAAACATATTAAATATAT-TA-A
* * *
10898482 TATATATATAAAAGTATAAAGTATAAGTAT-ATATATGTATAAATATATTAA
1 TATATATAT-AAAGTATAAAGTATAAGTATAAAACATAT-TAAATATATTAA
10898533 TATA
1 TATA
10898537 AATTATTAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
51 5 0.10
52 16 0.33
53 28 0.57
ACGTcount: A:0.53, C:0.01, G:0.07, T:0.39
Consensus pattern (50 bp):
TATATATATAAAGTATAAAGTATAAGTATAAAACATATTAAATATATTAA
Found at i:10898642 original size:32 final size:31
Alignment explanation
Indices: 10898521--10898648 Score: 109
Period size: 32 Copynumber: 4.0 Consensus size: 31
10898511 TATATATGTA
10898521 TAAATATAT-TAATATAAATTATTAAA-TAT
1 TAAATATATATAATATAAATTATTAAAGTAT
* * * *
10898550 ATATATATATATAAATACATTAATAAATTGAAGTAT
1 -TAAATATATAT-AAT--ATAAAT-TATTAAAGTAT
* * *
10898586 TGAAGTATATAT-ATAAAAAGTATTAAAGTAT
1 T-AAATATATATAATATAAATTATTAAAGTAT
10898617 TAAATATATATAAATATAAATTATTAAAGTAT
1 TAAATATATAT-AATATAAATTATTAAAGTAT
10898649 ATATAAATAA
Statistics
Matches: 75, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
30 17 0.23
31 11 0.15
32 23 0.31
34 7 0.09
35 6 0.08
36 11 0.15
ACGTcount: A:0.54, C:0.01, G:0.05, T:0.40
Consensus pattern (31 bp):
TAAATATATATAATATAAATTATTAAAGTAT
Found at i:10898655 original size:25 final size:25
Alignment explanation
Indices: 10898596--10898657 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 25
10898586 TGAAGTATAT
*
10898596 ATATAAAAAGTATTAAAGTATTAAAT
1 ATATATAAA-TATTAAAGTATTAAAT
*
10898622 ATATATAAATA-TAAATTATTAAAGT
1 ATATATAAATATTAAAGTATTAAA-T
10898647 ATATATAAATA
1 ATATATAAATA
10898658 AATTATAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 11 0.33
25 14 0.42
26 8 0.24
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (25 bp):
ATATATAAATATTAAAGTATTAAAT
Found at i:10898658 original size:23 final size:24
Alignment explanation
Indices: 10898521--10898669 Score: 93
Period size: 24 Copynumber: 6.2 Consensus size: 24
10898511 TATATATGTA
10898521 TAAATATAT-T-AATATAAATTAT
1 TAAATATATATAAATATAAATTAT
*
10898543 TAAATATATATATATATATAA--A-
1 TAAATATATATAAATATA-AATTAT
* * *
10898565 TACAT-TA-ATAAAT-TGAAGTAT
1 TAAATATATATAAATATAAATTAT
*
10898586 TGAAGTATATATATAAAAAGTATTAAAGTAT
1 T-AA--ATATATAT--AAA-TA-TAAATTAT
10898617 TAAATATATATAAATATAAATTAT
1 TAAATATATATAAATATAAATTAT
10898641 TAAAGTATATAT-AA-ATAAATTAT
1 TAAA-TATATATAAATATAAATTAT
*
10898664 AAAATA
1 TAAATA
10898670 CATAGGATCA
Statistics
Matches: 102, Mismatches: 8, Indels: 34
0.71 0.06 0.24
Matches are distributed among these distances:
18 2 0.02
19 1 0.01
20 6 0.06
21 3 0.03
22 16 0.16
23 14 0.14
24 20 0.20
25 13 0.13
26 5 0.05
28 11 0.11
29 1 0.01
30 2 0.02
31 8 0.08
ACGTcount: A:0.56, C:0.01, G:0.05, T:0.39
Consensus pattern (24 bp):
TAAATATATATAAATATAAATTAT
Found at i:10899481 original size:83 final size:83
Alignment explanation
Indices: 10899333--10899489 Score: 196
Period size: 83 Copynumber: 1.9 Consensus size: 83
10899323 CCTAACCCTA
* * * * *
10899333 AATCTTAAATCCCAAACATTTTTCATCTCCTATTCCTCTTCTTTAAATGAGACTCTTCTTCTTCC
1 AATCTCAAATCCCAAACATTTTTCATCTCCTATTCCCCCTCTCTAAATGAGACTCTTCCTCTT-C
10899398 CCTTT-TTCTATTTCCCAT
65 CCTTTCTTCTATTTCCCAT
*
10899416 AATCTCAAATCCCAAACATTATTT-ATCTCTTATTCCCCCTCTCT-AATCGAGACTCTTCC-CTT
1 AATCTCAAATCCCAAACATT-TTTCATCTCCTATTCCCCCTCTCTAAAT-GAGACTCTTCCTC-T
10899478 TCCCTTTCTTCT
63 TCCCTTTCTTCT
10899490 TCTTCTGTTC
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
82 10 0.16
83 51 0.80
84 3 0.05
ACGTcount: A:0.22, C:0.32, G:0.03, T:0.43
Consensus pattern (83 bp):
AATCTCAAATCCCAAACATTTTTCATCTCCTATTCCCCCTCTCTAAATGAGACTCTTCCTCTTCC
CTTTCTTCTATTTCCCAT
Found at i:10901014 original size:33 final size:33
Alignment explanation
Indices: 10900972--10901037 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
10900962 AGGAATTAAA
10900972 AGATATTCTCTTGTGTTTGATTATTTGGATAGG
1 AGATATTCTCTTGTGTTTGATTATTTGGATAGG
10901005 AGATATTCTCTTGTGTTTGATTATTTGGATAGG
1 AGATATTCTCTTGTGTTTGATTATTTGGATAGG
10901038 TGTTCTAAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.48
Consensus pattern (33 bp):
AGATATTCTCTTGTGTTTGATTATTTGGATAGG
Found at i:10902654 original size:22 final size:23
Alignment explanation
Indices: 10902626--10902669 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
10902616 GTTTAACTTT
*
10902626 CAAATCA-AAATTTTTATTTTTC
1 CAAATCATAAATTTTGATTTTTC
*
10902648 CAAATCATTAATTTTGATTTTT
1 CAAATCATAAATTTTGATTTTT
10902670 GAAAGCTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.52
Consensus pattern (23 bp):
CAAATCATAAATTTTGATTTTTC
Found at i:10904956 original size:13 final size:13
Alignment explanation
Indices: 10904940--10904983 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
10904930 TAAAATTATT
10904940 TTAAAGATTATAA
1 TTAAAGATTATAA
**
10904953 TTAAATTTTATAA
1 TTAAAGATTATAA
*
10904966 TATAAGGATTATAA
1 T-TAAAGATTATAA
10904980 TTAA
1 TTAA
10904984 CATAGAATAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (13 bp):
TTAAAGATTATAA
Found at i:10910437 original size:2 final size:2
Alignment explanation
Indices: 10910430--10910472 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
10910420 ATCCAAAATA
10910430 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10910472 A
1 A
10910473 CAACAGTCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10913086 original size:46 final size:44
Alignment explanation
Indices: 10912995--10913093 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 44
10912985 ATAGGTAGGC
* * *
10912995 TAAATTAATTTTTTTTATTGAGTTCGAATGTCATATTAGTTTTTT
1 TAAATTTA-TTTTTTTATTGAATTCGAATGTCAAATTAGTTTTTT
*
10913040 TAAGTTTATTTTTTTATTGAATTCGAATGTCAAATTAGTTTTTTTT
1 TAAATTTATTTTTTTATTGAATTCGAATGTCAAATTAG--TTTTTT
10913086 TAAATTTA
1 TAAATTTA
10913094 GGAGCATATT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
44 28 0.60
45 6 0.13
46 13 0.28
ACGTcount: A:0.28, C:0.04, G:0.10, T:0.58
Consensus pattern (44 bp):
TAAATTTATTTTTTTATTGAATTCGAATGTCAAATTAGTTTTTT
Found at i:10913638 original size:16 final size:16
Alignment explanation
Indices: 10913606--10913651 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
10913596 GTAAAATAAA
*
10913606 TTTT-AATTTCATATT
1 TTTTAAATTTTATATT
10913621 TTTTAAATTTTAT-TT
1 TTTTAAATTTTATATT
10913636 TTTATAAGATTTTATA
1 TTT-TAA-ATTTTATA
10913652 ATATTTACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 9 0.35
16 10 0.38
17 7 0.27
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (16 bp):
TTTTAAATTTTATATT
Found at i:10916237 original size:17 final size:18
Alignment explanation
Indices: 10916215--10916248 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10916205 TCAACCATAC
*
10916215 TTTTTATTTTTA-AATTT
1 TTTTTATCTTTACAATTT
10916232 TTTTTATCTTTACAATT
1 TTTTTATCTTTACAATT
10916249 GAGACCCTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTATCTTTACAATTT
Found at i:10916292 original size:43 final size:43
Alignment explanation
Indices: 10916232--10916899 Score: 458
Period size: 44 Copynumber: 15.9 Consensus size: 43
10916222 TTTTAAATTT
* * *
10916232 TTTTTATCTTTACAATTGAGACCCTTAATTTTTGTAATCTCAC
1 TTTTTACCTTTATAATTGAGACCCTTAATTTTTTTAATCTCAC
* * *
10916275 TATTTACCTTTATAATTGATA-CCTCTAATTTTTTTTAATCTTAC
1 TTTTTACCTTTATAATTGAGACCCT-TAA-TTTTTTTAATCTCAC
* * * * *
10916319 TTTTTACATTTATAATTGAAACCCTTAATTTTGTTATTC-CAT
1 TTTTTACCTTTATAATTGAGACCCTTAATTTTTTTAATCTCAC
* * * * *
10916361 TTTTTACCTTTATAATTGAGGCCCCTAACTTTTTTCATCTCAT
1 TTTTTACCTTTATAATTGAGACCCTTAATTTTTTTAATCTCAC
* * * *
10916404 TTTTTACTTTTTATAGTTGATG--CCTCTAATTTTTTCAATATCAC
1 TTTTTAC-CTTTATAATTGA-GACCCT-TAATTTTTTTAATCTCAC
* * * * *
10916448 TTTCTACCTTTATGATTGA-A-GCTGCT-ATTTTTTTATTATCAC
1 TTTTTACCTTTATAATTGAGACCCT--TAATTTTTTTAATCTCAC
*
10916490 TTTTTACCTTTATAATTGAGACCCCTAA-----TT--T-T---
1 TTTTTACCTTTATAATTGAGACCCTTAATTTTTTTAATCTCAC
* * *
10916522 TTTTTACCTTTATAATTGAGACCCCT-ATTTTTTTAATTTTTAC
1 TTTTTACCTTTATAATTGAGACCCTTAATTTTTTTAA-TCTCAC
* ** * *
10916565 TTTCTAGTTTTAAAATTGAAGGCCC-TAATTTTTTTAATCTCAC
1 TTTTTACCTTTATAATTG-AGACCCTTAATTTTTTTAATCTCAC
* * *
10916608 TTTTTACC--T-T--TTGAGGCCCCTAATTTTTTTCAATTTCAC
1 TTTTTACCTTTATAATTGAGACCCTTAATTTTTTT-AATCTCAC
* * * * *
10916647 TTTCTACCTTTATAATTGAAACCCATAATTTTTTTCGATCTCGC
1 TTTTTACCTTTATAATTGAGACCCTTAATTTTTTT-AATCTCAC
* ** *
10916691 CTTTTACCTTTATAATTGA-AGTCTCTAATTTTTTTTAATATCAC
1 TTTTTACCTTTATAATTGAGACCCT-TAA-TTTTTTTAATCTCAC
** * *
10916735 TTTTTATATTTATAATTGAGGCCCTTAATTTTTTCAATCTCAC
1 TTTTTACCTTTATAATTGAGACCCTTAATTTTTTTAATCTCAC
** *
10916778 TTTTTACCTTTATAATTGAGGTCCATAA-TTTTTTAATCTCA-
1 TTTTTACCTTTATAATTGAGACCCTTAATTTTTTTAATCTCAC
* *
10916819 TTTTCTACCTTTATAATTAAG-CCCCTAATTTTTTTAATCTCAC
1 TTTT-TACCTTTATAATTGAGACCCTTAATTTTTTTAATCTCAC
* * * ** *
10916862 TTTTTAGCTTTACAATTGAGGCCCCCAATTTTTCTAAT
1 TTTTTACCTTTATAATTGAGACCCTTAATTTTTTTAAT
10916900 TCAACCTTTT
Statistics
Matches: 497, Mismatches: 88, Indels: 80
0.75 0.13 0.12
Matches are distributed among these distances:
31 1 0.00
32 26 0.05
35 1 0.00
36 3 0.01
37 6 0.01
38 15 0.03
39 15 0.03
40 1 0.00
41 11 0.02
42 123 0.25
43 136 0.27
44 146 0.29
45 13 0.03
ACGTcount: A:0.25, C:0.18, G:0.06, T:0.51
Consensus pattern (43 bp):
TTTTTACCTTTATAATTGAGACCCTTAATTTTTTTAATCTCAC
Found at i:10916407 original size:42 final size:42
Alignment explanation
Indices: 10916232--10916978 Score: 491
Period size: 43 Copynumber: 17.7 Consensus size: 42
10916222 TTTTAAATTT
* * * *
10916232 TTTTTATCTTTACAATTGAGACCCTTAATTTTTGTAATCTCAC
1 TTTTTACCTTTATAATTGAGGCCCCTAATTTTT-TAATCTCAC
* ** * *
10916275 TATTTACCTTTATAATTGATACCTCTAATTTTTTTTAATCTTAC
1 TTTTTACCTTTATAATTGAGGCCCCTAA--TTTTTTAATCTCAC
* ** * * *
10916319 TTTTTACATTTATAATTGAAACCCTTAATTTTGTTATTC-CAT
1 TTTTTACCTTTATAATTGAGGCCCCTAATTTT-TTAATCTCAC
* *
10916361 TTTTTACCTTTATAATTGAGGCCCCTAACTTTTTTCATCTCAT
1 TTTTTACCTTTATAATTGAGGCCCCTAA-TTTTTTAATCTCAC
* * * * *
10916404 TTTTTACTTTTTATAGTTGATGCCTCTAATTTTTTCAATATCAC
1 TTTTTAC-CTTTATAATTGAGGCCCCTAATTTTTT-AATCTCAC
* * * ** * * *
10916448 TTTCTACCTTTATGATTGAAGCTGCTATTTTTTTATTATCAC
1 TTTTTACCTTTATAATTGAGGCCCCTAATTTTTTAATCTCAC
*
10916490 TTTTTACCTTTATAATTGAGACCCCTAA----TT--T-T---
1 TTTTTACCTTTATAATTGAGGCCCCTAATTTTTTAATCTCAC
* * * *
10916522 TTTTTACCTTTATAATTGAGACCCCTATTTTTTTAATTTTTAC
1 TTTTTACCTTTATAATTGAGGCCCCTAATTTTTTAA-TCTCAC
* ** *
10916565 TTTCTAGTTTTAAAATTGAAGG-CCCTAATTTTTTTAATCTCAC
1 TTTTTACCTTTATAATTG-AGGCCCCTAA-TTTTTTAATCTCAC
*
10916608 TTTTTACC--T-T--TTGAGGCCCCTAATTTTTTTCAATTTCAC
1 TTTTTACCTTTATAATTGAGGCCCCTAA-TTTTTT-AATCTCAC
* ** * * *
10916647 TTTCTACCTTTATAATTGAAACCCATAATTTTTTTCGATCTCGC
1 TTTTTACCTTTATAATTGAGGCCCCTAA-TTTTTT-AATCTCAC
* * * * *
10916691 CTTTTACCTTTATAATTGAAGTCTCTAATTTTTTTTAATATCAC
1 TTTTTACCTTTATAATTGAGGCCCCTAA--TTTTTTAATCTCAC
** *
10916735 TTTTTATATTTATAATTGAGGCCCTTAATTTTTTCAATCTCAC
1 TTTTTACCTTTATAATTGAGGCCCCTAATTTTTT-AATCTCAC
* *
10916778 TTTTTACCTTTATAATTGAGGTCCATAATTTTTTAATCTCA-
1 TTTTTACCTTTATAATTGAGGCCCCTAATTTTTTAATCTCAC
*
10916819 TTTTCTACCTTTATAATT-AAGCCCCTAATTTTTTTAATCTCAC
1 TTTT-TACCTTTATAATTGAGGCCCCTAA-TTTTTTAATCTCAC
* * *
10916862 TTTTTAGCTTTACAATTGAGGCCCCCAATTTTTCTAAT-TCAAC
1 TTTTTACCTTTATAATTGAGGCCCCTAATTTTT-TAATCTC-AC
* * * *
10916905 CTTTTA-CTTTCATAACTT-ACGCTCCC-AATTCTTCTAATC-CAA
1 TTTTTACCTTT-ATAA-TTGAGGC-CCCTAATT-TTTTAATCTCAC
*
10916947 TCTTTTACTTTTATAACTT-AGGCCCCTAATTT
1 T-TTTTACCTTTATAA-TTGAGGCCCCTAATTT
10916979 AATCATTTTT
Statistics
Matches: 560, Mismatches: 101, Indels: 87
0.75 0.14 0.12
Matches are distributed among these distances:
32 27 0.05
35 1 0.00
36 3 0.01
37 3 0.01
38 18 0.03
39 15 0.03
40 1 0.00
41 13 0.02
42 128 0.23
43 189 0.34
44 150 0.27
45 12 0.02
ACGTcount: A:0.25, C:0.19, G:0.06, T:0.50
Consensus pattern (42 bp):
TTTTTACCTTTATAATTGAGGCCCCTAATTTTTTAATCTCAC
Found at i:10916527 original size:32 final size:31
Alignment explanation
Indices: 10916490--10916555 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 31
10916480 TTATTATCAC
10916490 TTTTTACCTTTATAATTGAGACCCCTAATTTT
1 TTTTTACCTTTATAATTGAGACCCCT-ATTTT
10916522 TTTTTACCTTTATAATTGAGACCCCTATTTT
1 TTTTTACCTTTATAATTGAGACCCCTATTTT
10916553 TTT
1 TTT
10916556 AATTTTTACT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 8 0.24
32 26 0.76
ACGTcount: A:0.23, C:0.18, G:0.06, T:0.53
Consensus pattern (31 bp):
TTTTTACCTTTATAATTGAGACCCCTATTTT
Found at i:10919845 original size:16 final size:16
Alignment explanation
Indices: 10919824--10919861 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
10919814 TTTGCAGGTA
*
10919824 TTTATTTTATG-ATGTG
1 TTTATTTCATGTAT-TG
10919840 TTTATTTCATGTATTG
1 TTTATTTCATGTATTG
10919856 TTTATT
1 TTTATT
10919862 CATTGTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 18 0.90
17 2 0.10
ACGTcount: A:0.18, C:0.03, G:0.13, T:0.66
Consensus pattern (16 bp):
TTTATTTCATGTATTG
Found at i:10923716 original size:23 final size:22
Alignment explanation
Indices: 10923689--10923737 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
10923679 GTCGGAGTGT
* *
10923689 GGCGGAGGATGGCTGACGGCGGC
1 GGCGGAGG-TGGCGGACGACGGC
10923712 GGC-G-GGTGGCGGACGACGGC
1 GGCGGAGGTGGCGGACGACGGC
10923732 GGCGGA
1 GGCGGA
10923738 CAACTAGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
20 15 0.68
21 3 0.14
22 1 0.05
23 3 0.14
ACGTcount: A:0.12, C:0.22, G:0.59, T:0.06
Consensus pattern (22 bp):
GGCGGAGGTGGCGGACGACGGC
Found at i:10923721 original size:20 final size:20
Alignment explanation
Indices: 10923698--10923736 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10923688 TGGCGGAGGA
* *
10923698 TGGCTGACGGCGGCGGCGGG
1 TGGCGGACGACGGCGGCGGG
10923718 TGGCGGACGACGGCGGCGG
1 TGGCGGACGACGGCGGCGG
10923737 ACAACTAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.08, C:0.26, G:0.59, T:0.08
Consensus pattern (20 bp):
TGGCGGACGACGGCGGCGGG
Found at i:10925112 original size:14 final size:14
Alignment explanation
Indices: 10925093--10925140 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
10925083 GAGAAATGTT
10925093 TCTTTATTCTTTTC
1 TCTTTATTCTTTTC
***
10925107 TCTTTAAAATTTTC
1 TCTTTATTCTTTTC
10925121 -CTTTTATTCTTTTC
1 TC-TTTATTCTTTTC
10925135 TCTTTA
1 TCTTTA
10925141 AAATTTTTCA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
13 1 0.04
14 24 0.92
15 1 0.04
ACGTcount: A:0.15, C:0.19, G:0.00, T:0.67
Consensus pattern (14 bp):
TCTTTATTCTTTTC
Found at i:10925147 original size:14 final size:14
Alignment explanation
Indices: 10925102--10925164 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
10925092 TTCTTTATTC
10925102 TTTTCTCTTTAAAA
1 TTTTCTCTTTAAAA
***
10925116 TTTTC-CTTTTATTC
1 TTTTCTC-TTTAAAA
10925130 TTTTCTCTTTAAAA
1 TTTTCTCTTTAAAA
*
10925144 TTTTTCATTTTTAAAA
1 -TTTTC-TCTTTAAAA
10925160 TTTTC
1 TTTTC
10925165 CGATGCAGTA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
13 1 0.03
14 18 0.47
15 11 0.29
16 8 0.21
ACGTcount: A:0.22, C:0.14, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTTCTCTTTAAAA
Found at i:10931491 original size:20 final size:19
Alignment explanation
Indices: 10931468--10931514 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
10931458 CGATATACCA
10931468 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
10931488 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
*
10931508 GATAAAA
1 GGTAAAA
10931515 CGTTACCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 3 0.12
ACGTcount: A:0.57, C:0.11, G:0.15, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Done.