genome.fa.s8623.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008623.1 Hibiscus syriacus cultivar Beakdansim tig00111586_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78635

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3055--3103	5	9.8	5	88	0	62	4	38	36	20	1.72
3101--3177	6	13.2	6	82	5	86	6	16	45	31	1.73
3105--3173	23	3.0	22	76	18	68	7	17	46	28	1.75
8966--9009	5	8.8	5	89	0	61	4	38	38	18	1.71
9007--9137	6	22.2	6	89	2	176	4	16	47	31	1.67
15235--15269	15	2.3	15	100	0	70	14	22	34	28	1.93
22097--22146	15	3.3	15	97	0	91	16	24	32	28	1.96
23965--24008	5	8.8	5	87	0	52	9	40	34	15	1.79
24006--24102	6	16.2	6	91	0	140	5	17	48	28	1.68
29982--30045	6	10.7	6	93	0	101	4	15	50	29	1.65
32201--32296	32	3.2	28	79	10	75	41	12	25	20	1.87
36635--36662	2	14.0	2	100	0	56	50	0	0	50	1.00
39501--39549	2	24.5	2	100	0	98	48	0	0	51	1.00
46494--46538	22	2.1	22	91	4	74	24	24	24	26	2.00
51327--51461	20	6.7	20	80	7	121	33	24	17	24	1.96
51324--51455	61	2.2	61	87	0	183	35	24	16	23	1.95
51935--51993	20	3.0	20	87	0	73	16	18	22	42	1.89
52130--52184	25	2.2	24	78	15	58	20	9	18	52	1.71
53310--53354	18	2.5	18	88	0	72	26	44	15	13	1.83
53836--53881	20	2.3	20	84	0	56	39	26	19	15	1.91
53853--53890	20	2.0	20	89	5	60	31	23	26	18	1.97
53891--53948	14	3.9	14	79	16	71	48	24	17	10	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53875--53965	32	2.8	33	93	3	157	47	20	18	13	1.82
53977--54041	18	3.8	18	75	19	75	12	20	21	46	1.83
54026--54081	20	2.8	19	84	7	67	16	23	23	37	1.93
53977--54041	33	2.0	33	91	8	107	12	20	21	46	1.83
55953--55988	14	2.6	14	90	0	54	30	0	22	47	1.52
56071--56109	20	2.0	20	89	0	60	48	30	10	10	1.70
56115--56165	19	2.7	19	100	0	102	45	17	21	15	1.86
56886--56939	24	2.2	24	90	0	81	22	16	20	40	1.91
59408--59534	33	3.8	33	87	4	193	42	18	22	15	1.89
59409--59541	66	2.0	66	95	0	239	41	18	22	17	1.90
59549--59605	14	3.7	14	75	20	60	8	24	22	43	1.81
59534--59623	33	2.7	33	94	0	153	13	22	21	43	1.87
59563--59623	19	3.5	19	72	21	69	11	22	21	44	1.84
59729--59765	14	2.6	14	91	0	65	45	24	0	29	1.53
63292--63448	19	8.7	19	74	15	111	44	20	22	12	1.85
63315--63399	33	2.6	33	90	3	136	38	22	25	12	1.90
63384--63453	19	3.7	19	96	0	122	47	21	20	11	1.81
63315--63448	33	3.9	33	84	6	135	43	21	23	11	1.86
63449--63513	19	3.5	19	85	2	87	10	15	24	49	1.76
64027--64079	20	2.7	20	93	0	88	26	20	28	24	1.99
64088--64141	20	2.7	20	97	0	99	25	18	24	31	1.97
64028--64144	61	1.9	61	85	0	162	23	17	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64028--64162	61	2.2	61	81	2	155	22	20	24	32	1.98
67351--67389	20	2.0	20	94	0	69	23	30	25	20	1.98
68161--68320	64	2.5	62	80	7	171	31	18	23	26	1.97
68308--68363	19	2.7	21	89	10	80	28	21	23	26	1.99
76261--76298	20	1.9	20	89	10	60	44	26	15	13	1.83
76348--77539	198	6.1	197	85	5	1540	42	15	14	27	1.86
76347--77539	396	3.0	395	91	3	1815	42	15	14	27	1.86
77385--77916	284	1.9	280	91	5	874	37	18	13	30	1.89

Tables:   1

The End!