Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01008625.1 Hibiscus syriacus cultivar Beakdansim tig00111588_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 166303
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


File 2 of 2

Found at i:156330 original size:22 final size:22

Alignment explanation


    Indices: 156305--156349  Score: 56
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     156295 TTAGTAATAT

                                   
     156305 TTTTATCA-TAATTACTAATTTA
          1 TTTTA-CATTAATTACTAATTTA

                     *    *       
     156327 TTTTACATTTATTATTAATTTA
          1 TTTTACATTAATTACTAATTTA

             
     156349 T
          1 T

     156350 CGATTCCAAG


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  21    2  0.10
  22   18  0.90

ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60


Consensus pattern (22 bp):   
TTTTACATTAATTACTAATTTA

Done.