Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008628.1 Hibiscus syriacus cultivar Beakdansim tig00111596_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 236829
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.33
Found at i:1165 original size:27 final size:26
Alignment explanation
Indices: 1117--1178 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
1107 ATTTTTTTTT
* *
1117 TATTTTT-TAAAAAATTATTTTTATA
1 TATTTTTAAAAAAAATTAGTTTTATA
*
1142 TATTTTTAAAAAAAATTAAGTTTTCTA
1 TATTTTTAAAAAAAATT-AGTTTTATA
1169 -ACTTTTTAAA
1 TA-TTTTTAAA
1179 TTTTACTTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 7 0.23
26 9 0.29
27 15 0.48
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (26 bp):
TATTTTTAAAAAAAATTAGTTTTATA
Found at i:2814 original size:7 final size:7
Alignment explanation
Indices: 2802--2826 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2792 TTAATTTTGT
2802 GGATTTA
1 GGATTTA
2809 GGATTTA
1 GGATTTA
2816 GGATTTA
1 GGATTTA
2823 GGAT
1 GGAT
2827 GAGTTTTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.32, T:0.40
Consensus pattern (7 bp):
GGATTTA
Found at i:3625 original size:19 final size:20
Alignment explanation
Indices: 3586--3626 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
3576 TTCAGAAAGG
*
3586 TTTTGATAAAATTATTATTA
1 TTTTGATAAAATTAATATTA
*
3606 TTTTGATAAATTTAAT-TTA
1 TTTTGATAAAATTAATATTA
3625 TT
1 TT
3627 ATCCAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTTGATAAAATTAATATTA
Found at i:23424 original size:18 final size:18
Alignment explanation
Indices: 23388--23424 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
23378 GAAAGTCATT
*
23388 TTAGTATCGATACCCTAG
1 TTAGTATCGATACCATAG
*
23406 TTAGTATCGATACTATAG
1 TTAGTATCGATACCATAG
23424 T
1 T
23425 ATGGAAGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (18 bp):
TTAGTATCGATACCATAG
Found at i:26871 original size:45 final size:45
Alignment explanation
Indices: 26803--26918 Score: 191
Period size: 45 Copynumber: 2.6 Consensus size: 45
26793 TAAATGATAA
* *
26803 ATTGG-AAAATAAGCTTACGAGCTTATGGAACAAATGGTAAGTAT
1 ATTGGTAAAATAAGCTTACTAGCTTATGGAACAAATGATAAGTAT
26847 ATTGGTAAAATAAGCTTACTAGCTTATGGAACAAATGATAAGTAT
1 ATTGGTAAAATAAGCTTACTAGCTTATGGAACAAATGATAAGTAT
26892 ATTGGTAAAATAAGCTTA-TAAGCTTAT
1 ATTGGTAAAATAAGCTTACT-AGCTTAT
26919 AGGATAAATA
Statistics
Matches: 68, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
44 6 0.09
45 62 0.91
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.31
Consensus pattern (45 bp):
ATTGGTAAAATAAGCTTACTAGCTTATGGAACAAATGATAAGTAT
Found at i:26913 original size:25 final size:25
Alignment explanation
Indices: 26840--26913 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
26830 GAACAAATGG
26840 TAAGTATATTGGTAAAATAAGCTTA
1 TAAGTATATTGGTAAAATAAGCTTA
* *
26865 CT-AGCT-TA-TGG-AACA-AA--TGA
1 -TAAG-TATATTGGTAAAATAAGCTTA
26885 TAAGTATATTGGTAAAATAAGCTTA
1 TAAGTATATTGGTAAAATAAGCTTA
26910 TAAG
1 TAAG
26914 CTTATAGGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 17
0.63 0.07 0.30
Matches are distributed among these distances:
19 2 0.06
20 6 0.17
21 3 0.08
22 5 0.14
23 5 0.14
24 3 0.08
25 10 0.28
26 2 0.06
ACGTcount: A:0.43, C:0.07, G:0.18, T:0.32
Consensus pattern (25 bp):
TAAGTATATTGGTAAAATAAGCTTA
Found at i:28734 original size:19 final size:19
Alignment explanation
Indices: 28710--28753 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
28700 TGCATAAATG
28710 GTATCGATACTGCAAGGGA
1 GTATCGATACTGCAAGGGA
*
28729 GTATCGATATTGCAAGGGA
1 GTATCGATACTGCAAGGGA
28748 GTATCG
1 GTATCG
28754 GTACCATAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.32, T:0.25
Consensus pattern (19 bp):
GTATCGATACTGCAAGGGA
Found at i:29219 original size:54 final size:53
Alignment explanation
Indices: 29132--29396 Score: 289
Period size: 54 Copynumber: 4.9 Consensus size: 53
29122 ACTATCGGCT
* * * *
29132 CTAAGTGTGTAACCCACGAAATTCATCATATGTTGATGAACGACCTTATAGGCA
1 CTAAGTGTGCAACCCAC-AAATTCATAATATGTTTATGAACGACCGTATAGGCA
* * * * * *
29186 CTAAGTGTGCAACCAACATAATTCATCACATGTTGATGAAGGATCGTATAGGCA
1 CTAAGTGTGCAACCCACA-AATTCATAATATGTTTATGAACGACCGTATAGGCA
* * * *
29240 CTAAGTGTGCAACCCACGAAATTCATAATGTGTTTATGGACAACCGTATCGGCA
1 CTAAGTGTGCAACCCAC-AAATTCATAATATGTTTATGAACGACCGTATAGGCA
* * *
29294 CTAAGTGTGCAACCCACAAAATTTATAATGTGTTTATGGACGACCGTATCA-GCA
1 CTAAGTGTGCAACCCAC-AAATTCATAATATGTTTATGAACGACCGTAT-AGGCA
* * *
29348 CTAGGTGTGCAACCCAAAGAATTCATAATATGTTTATGAACGACTGTAT
1 CTAAGTGTGCAACCCACA-AATTCATAATATGTTTATGAACGACCGTAT
29397 CGGTACTACG
Statistics
Matches: 181, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
53 2 0.01
54 178 0.98
55 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.28
Consensus pattern (53 bp):
CTAAGTGTGCAACCCACAAATTCATAATATGTTTATGAACGACCGTATAGGCA
Found at i:29397 original size:54 final size:55
Alignment explanation
Indices: 29124--29431 Score: 237
Period size: 54 Copynumber: 5.7 Consensus size: 55
29114 CTATGTGTAC
* * * * *
29124 TATC-GGCTCTAAGTGTGTAACCC-ACGAAATTCATCATATGTTGATGAACGACCT-
1 TATCAGGCACTAAGTGTGCAACCCAAAG-AATTCATAATATGTTTATGAACGA-CTG
* * * * *
29178 TAT-AGGCACTAAGTGTGCAA-CCAACATAATTCATCACATGTTGATGAAGGA-TCG
1 TATCAGGCACTAAGTGTGCAACCCAA-AGAATTCATAATATGTTTATGAACGACT-G
* * * * *
29232 TAT-AGGCACTAAGTGTGCAACCC-ACGAAATTCATAATGTGTTTATGGACAACCG
1 TATCAGGCACTAAGTGTGCAACCCAAAG-AATTCATAATATGTTTATGAACGACTG
* * * *
29286 TATC-GGCACTAAGTGTGCAACCCACAA-AATTTATAATGTGTTTATGGACGACCG
1 TATCAGGCACTAAGTGTGCAACCCA-AAGAATTCATAATATGTTTATGAACGACTG
*
29340 TATCA-GCACTAGGTGTGCAACCCAAAGAATTCATAATATGTTTATGAACGACTG
1 TATCAGGCACTAAGTGTGCAACCCAAAGAATTCATAATATGTTTATGAACGACTG
* * * * *
29394 TATC-GGTACTACGTGTTCATCTCAAAGAAATT-ATAATA
1 TATCAGGCACTAAGTGTGCAACCCAAAG-AATTCATAATA
29432 ATTTGAAAAT
Statistics
Matches: 210, Mismatches: 29, Indels: 30
0.78 0.11 0.11
Matches are distributed among these distances:
52 1 0.00
53 4 0.02
54 198 0.94
55 6 0.03
56 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (55 bp):
TATCAGGCACTAAGTGTGCAACCCAAAGAATTCATAATATGTTTATGAACGACTG
Found at i:37550 original size:54 final size:53
Alignment explanation
Indices: 37464--37737 Score: 287
Period size: 54 Copynumber: 5.1 Consensus size: 53
37454 GTACTATCGA
* * *
37464 CACTAAGTGTGAAACCCACGAATTCATCATATGTTGATGAAAGACCGTATAGG
1 CACTAAGTGTGCAACCCACGAATTCATAATATGTTGATGAACGACCGTATAGG
* ** * *
37517 CATTAAGTGTGCAAGTCACGCAATTCATTATATGTTGATGAACGATCGTATAGG
1 CACTAAGTGTGCAACCCACG-AATTCATAATATGTTGATGAACGACCGTATAGG
* * * * *
37571 CACTAAGTGTGCAACCCACATAATTCATAATGTGTTTATGGACGACCGTATCGG
1 CACTAAGTGTGCAACCCAC-GAATTCATAATATGTTGATGAACGACCGTATAGG
* * * * * * ** *
37625 CACTAAGTGTGCAACCCACATAATTCATAATGTATTTATGGATGACTATATCGG
1 CACTAAGTGTGCAACCCAC-GAATTCATAATATGTTGATGAACGACCGTATAGG
* * *
37679 CACTAAGTGTGCAACCCACGGAATTCATAATATGTTTATGAACGACTGTATCGG
1 CACTAAGTGTGCAACCCAC-GAATTCATAATATGTTGATGAACGACCGTATAGG
37733 CACTA
1 CACTA
37738 CGTATGCATC
Statistics
Matches: 191, Mismatches: 28, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
53 16 0.08
54 175 0.92
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (53 bp):
CACTAAGTGTGCAACCCACGAATTCATAATATGTTGATGAACGACCGTATAGG
Found at i:37632 original size:108 final size:106
Alignment explanation
Indices: 37456--37737 Score: 316
Period size: 108 Copynumber: 2.6 Consensus size: 106
37446 TACTATGTGT
* * * * * * *
37456 ACTAT-CGACACTAAGTGTGAAACCCACGAATTCATCATATGTTGATGAAAGACCGTATAGGCAT
1 ACTATACGGCACTAAGTGTGCAACCCACGAATTCATAATATGTTTATGAACGACCGTATCGGCAC
** * * *
37520 TAAGTGTGCAAGTCACGCAATTCATTATATGTTGATGAACG
66 TAAGTGTGCAACCCACACAATTCATAATATATTGATGAACG
* * *
37561 ATCGTATA-GGCACTAAGTGTGCAACCCACATAATTCATAATGTGTTTATGGACGACCGTATCGG
1 A-C-TATACGGCACTAAGTGTGCAACCCAC-GAATTCATAATATGTTTATGAACGACCGTATCGG
* * * * *
37625 CACTAAGTGTGCAACCCACATAATTCATAATGTATTTATGGATG
63 CACTAAGTGTGCAACCCACACAATTCATAATATATTGATGAACG
*
37669 ACTATATCGGCACTAAGTGTGCAACCCACGGAATTCATAATATGTTTATGAACGACTGTATCGGC
1 ACTATA-CGGCACTAAGTGTGCAACCCAC-GAATTCATAATATGTTTATGAACGACCGTATCGGC
37734 ACTA
64 ACTA
37738 CGTATGCATC
Statistics
Matches: 146, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
105 1 0.01
106 5 0.03
107 23 0.16
108 117 0.80
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (106 bp):
ACTATACGGCACTAAGTGTGCAACCCACGAATTCATAATATGTTTATGAACGACCGTATCGGCAC
TAAGTGTGCAACCCACACAATTCATAATATATTGATGAACG
Found at i:63099 original size:23 final size:23
Alignment explanation
Indices: 63039--63105 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
63029 TCAGGATAAT
* *
63039 TATGTGGCACTTCGATGCAAACC
1 TATGTGGCACTTCGGTGCAAAAC
63062 TATGTGGCACTTCGGTGCAAAAC
1 TATGTGGCACTTCGGTGCAAAAC
*
63085 TATGTGACACTTCGGTG-AAAA
1 TATGTGGCACTTCGGTGCAAAA
63106 TTACGAGCTG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 4 0.10
23 37 0.90
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (23 bp):
TATGTGGCACTTCGGTGCAAAAC
Found at i:67694 original size:23 final size:23
Alignment explanation
Indices: 67664--67772 Score: 155
Period size: 23 Copynumber: 4.7 Consensus size: 23
67654 GACAATTATG
67664 TGGCACTTCGGTGCAAACCTATA
1 TGGCACTTCGGTGCAAACCTATA
* *
67687 TGACACTTCAGTGCAAACCTATA
1 TGGCACTTCGGTGCAAACCTATA
* *
67710 TGGCACTTCGGTGCAAACATATG
1 TGGCACTTCGGTGCAAACCTATA
** *
67733 TGGCACTTCGGTGCAAAATTATG
1 TGGCACTTCGGTGCAAACCTATA
67756 TGGCACTTCGGTGCAAA
1 TGGCACTTCGGTGCAAA
67773 TTACGAGCTA
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 78 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (23 bp):
TGGCACTTCGGTGCAAACCTATA
Found at i:68059 original size:27 final size:27
Alignment explanation
Indices: 68029--68081 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
68019 GCATTTCGTT
68029 ATATG-TAATATTATATGATT-TTGTATG
1 ATATGATAATATTA-AT-ATTCTTGTATG
68056 ATATGATAATATTAATATTCTTGTAT
1 ATATGATAATATTAATATTCTTGTAT
68082 TGTTAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 3 0.12
27 13 0.54
28 8 0.33
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.51
Consensus pattern (27 bp):
ATATGATAATATTAATATTCTTGTATG
Found at i:70254 original size:20 final size:20
Alignment explanation
Indices: 70229--70275 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
70219 TGTTTTTCAT
70229 ATTTTAAA-AGCTTTAAACAC
1 ATTTTAAACA-CTTTAAACAC
*
70249 ATTTTAAACACTTTAAACAT
1 ATTTTAAACACTTTAAACAC
70269 ATTTTAA
1 ATTTTAA
70276 GTAACTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.45, C:0.13, G:0.02, T:0.40
Consensus pattern (20 bp):
ATTTTAAACACTTTAAACAC
Found at i:72112 original size:32 final size:32
Alignment explanation
Indices: 72071--72169 Score: 99
Period size: 32 Copynumber: 3.1 Consensus size: 32
72061 ATGTCTTTAC
* *
72071 TGTACATTATCAAAATGCAATAATGATTCTAT
1 TGTACATTATCAGAATGCAATATTGATTCTAT
* ** * * *
72103 TGTAGATTATTTGAATACAATATTGGTTATAT
1 TGTACATTATCAGAATGCAATATTGATTCTAT
* * *
72135 TGTATATTATCAGAATGTAATATTGATTCTGT
1 TGTACATTATCAGAATGCAATATTGATTCTAT
72167 TGT
1 TGT
72170 GACTCATACA
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.44
Consensus pattern (32 bp):
TGTACATTATCAGAATGCAATATTGATTCTAT
Found at i:74930 original size:18 final size:18
Alignment explanation
Indices: 74907--74942 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
74897 GACTCAAGTC
74907 ATCATGTTTTACAATGGT
1 ATCATGTTTTACAATGGT
74925 ATCATGTTTTACAATGGT
1 ATCATGTTTTACAATGGT
74943 GTCAATGCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.44
Consensus pattern (18 bp):
ATCATGTTTTACAATGGT
Found at i:76894 original size:24 final size:23
Alignment explanation
Indices: 76839--76894 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 23
76829 AAAGATATAT
76839 TAAAATAAAATAAATAATAAAAA
1 TAAAATAAAATAAATAATAAAAA
*
76862 -AAGGA-AAAAT-AATAATAATAAA
1 TAA-AATAAAATAAATAATAA-AAA
76884 TAAATATAAAA
1 TAAA-ATAAAA
76895 GGGGGATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 9
0.70 0.05 0.24
Matches are distributed among these distances:
21 8 0.31
22 10 0.38
23 4 0.15
24 4 0.15
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (23 bp):
TAAAATAAAATAAATAATAAAAA
Found at i:79410 original size:19 final size:19
Alignment explanation
Indices: 79354--79427 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 19
79344 TCAGAGAGAA
79354 AAAAT-AAAATAAAATAAAAT
1 AAAATGAAAAT-AAAT-AAAT
79374 AAAAT-AAAATTTTAAATAAA-
1 AAAATGAAAA---TAAATAAAT
*
79394 ATAAATGGAAATAAATAAAT
1 A-AAATGAAAATAAATAAAT
79414 AAAATGAAAATAAA
1 AAAATGAAAATAAA
79428 ACGAAATGGG
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
19 20 0.43
20 11 0.24
21 7 0.15
22 7 0.15
23 1 0.02
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (19 bp):
AAAATGAAAATAAATAAAT
Found at i:79423 original size:6 final size:5
Alignment explanation
Indices: 79354--79428 Score: 75
Period size: 5 Copynumber: 14.8 Consensus size: 5
79344 TCAGAGAGAA
* *
79354 AAAAT AAAAT AAAAT AAAAT AAAAT AAAATTT TAAAT AAAAT -AAAT GGAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA--T AAAAT AAAAT AAAAT -AAAAT
79406 -AAAT -AAAT AAAAT GAAAAT AAAA
1 AAAAT AAAAT AAAAT -AAAAT AAAA
79429 CGAAATGGGT
Statistics
Matches: 62, Mismatches: 2, Indels: 12
0.82 0.03 0.16
Matches are distributed among these distances:
4 12 0.19
5 37 0.60
6 9 0.15
7 4 0.06
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:82384 original size:26 final size:26
Alignment explanation
Indices: 82328--82384 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
82318 AAAGATATAT
*
82328 TAAAATAAAATAAATAATAAAAAAGG
1 TAAAATAAAATAAATAATAAAAAAGA
* * *
82354 GAAAATAATAT-AATAATAAATAAATA
1 TAAAATAAAATAAATAATAAA-AAAGA
82380 TAAAA
1 TAAAA
82385 GGGGGATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (26 bp):
TAAAATAAAATAAATAATAAAAAAGA
Found at i:84235 original size:27 final size:27
Alignment explanation
Indices: 84184--84276 Score: 104
Period size: 27 Copynumber: 3.6 Consensus size: 27
84174 AATAAATTAT
* ** *
84184 ATATTTTTAAATGAAAATAAAAATAAA
1 ATATTTTTAAATTAAGTTAATAATAAA
84211 ATATTTTTAAATTAAGTTAATAATAAA
1 ATATTTTTAAATTAAGTTAATAATAAA
*
84238 ATATATTT-AA-TAAGTTAAT-ATAAA
1 ATATTTTTAAATTAAGTTAATAATAAA
84262 A-ATATTTTAAATTAA
1 ATAT-TTTTAAATTAA
84277 TATATATATA
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
23 2 0.04
24 9 0.16
25 11 0.19
26 5 0.09
27 30 0.53
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (27 bp):
ATATTTTTAAATTAAGTTAATAATAAA
Found at i:84286 original size:27 final size:26
Alignment explanation
Indices: 84208--84276 Score: 90
Period size: 25 Copynumber: 2.7 Consensus size: 26
84198 AAATAAAAAT
84208 AAAATATTTTTAAATTAAGTTAATA-A
1 AAAATA-TTTTAAATTAAGTTAATATA
84234 TAAAATATATTT-AA-TAAGTTAATATA
1 -AAAATAT-TTTAAATTAAGTTAATATA
84260 AAAATATTTTAAATTAA
1 AAAATATTTTAAATTAA
84277 TATATATATA
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
24 3 0.08
25 19 0.50
26 7 0.18
27 9 0.24
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (26 bp):
AAAATATTTTAAATTAAGTTAATATA
Found at i:84583 original size:39 final size:38
Alignment explanation
Indices: 84540--84650 Score: 118
Period size: 39 Copynumber: 2.9 Consensus size: 38
84530 AAAAAATAAA
84540 TTAGAATGTTA-ATGTGAAATAATTTAAGATATTAAGACT
1 TTAGAATGTTATA-GTGAAATAATTTAAGA-ATTAAGACT
* * * * *
84579 TTAGAACGTTATGGTGTCAA-AATTTAAGAAATTAGGATT
1 TTAGAATGTTATAGTG-AAATAATTTAAG-AATTAAGACT
*
84618 TTAGAATGTTATAGTGAAATAATTTGAGAATTA
1 TTAGAATGTTATAGTGAAATAATTTAAGAATTA
84651 TGAATAAAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
38 7 0.12
39 49 0.83
40 3 0.05
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (38 bp):
TTAGAATGTTATAGTGAAATAATTTAAGAATTAAGACT
Found at i:85082 original size:31 final size:31
Alignment explanation
Indices: 85044--85121 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
85034 ACGACGGTCG
* **
85044 AAGTGACCACATCTTAATTAAATAAAAATTA
1 AAGTGACCATATCTTAATTAAATAAAAACGA
*
85075 AAGTGACCATATCTTAATTAAATAAAGACGA
1 AAGTGACCATATCTTAATTAAATAAAAACGA
85106 AAGTGACCATATCTTA
1 AAGTGACCATATCTTA
85122 TATTTTTTGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.28
Consensus pattern (31 bp):
AAGTGACCATATCTTAATTAAATAAAAACGA
Found at i:87847 original size:22 final size:22
Alignment explanation
Indices: 87822--87875 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
87812 CAAAAATGGC
*
87822 ATCGATACCATAGTATGGTCGT
1 ATCGATACCATAGTATGGTAGT
*
87844 ATCGGTACCATAGTATGGTAGT
1 ATCGATACCATAGTATGGTAGT
87866 ATCGATACCA
1 ATCGATACCA
87876 GGCAACATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (22 bp):
ATCGATACCATAGTATGGTAGT
Found at i:88020 original size:34 final size:34
Alignment explanation
Indices: 87977--88047 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
87967 ACTATGGAGT
87977 CAGAAATGTTAAAATAGGTTGATATTGTTATAAA
1 CAGAAATGTTAAAATAGGTTGATATTGTTATAAA
88011 CAGAAATGTTAAAATAGGTTGATATTGTTATAAA
1 CAGAAATGTTAAAATAGGTTGATATTGTTATAAA
88045 CAG
1 CAG
88048 TTATCGATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.44, C:0.04, G:0.18, T:0.34
Consensus pattern (34 bp):
CAGAAATGTTAAAATAGGTTGATATTGTTATAAA
Found at i:90597 original size:32 final size:32
Alignment explanation
Indices: 90555--90647 Score: 123
Period size: 32 Copynumber: 2.9 Consensus size: 32
90545 ACTAGCAGCT
* * * * *
90555 TGTCATATTCAGATCATGCATAATAGTGTTAG
1 TGTCACATTCAGATAATGCACAATAGTGTCAA
* *
90587 TGTCACATTCAAATAATGCACAGTAGTGTCAA
1 TGTCACATTCAGATAATGCACAATAGTGTCAA
90619 TGTCACATTCAGATAATGCACAATAGTGT
1 TGTCACATTCAGATAATGCACAATAGTGT
90648 ATCATGTATC
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32
Consensus pattern (32 bp):
TGTCACATTCAGATAATGCACAATAGTGTCAA
Found at i:91592 original size:32 final size:32
Alignment explanation
Indices: 91511--91600 Score: 99
Period size: 32 Copynumber: 2.8 Consensus size: 32
91501 TACTAGTAGT
*
91511 GTGTTGCATTCAGATAATGCACATCAGTGCCA
1 GTGTTGCATTCAGATAATGCACAACAGTGCCA
* * * * * *
91543 ATATTGTATTCAAATAATGCACAACAGTGTCG
1 GTGTTGCATTCAGATAATGCACAACAGTGCCA
* *
91575 GTGTTGCATTTAGATAATGCAAAACA
1 GTGTTGCATTCAGATAATGCACAACA
91601 ATGTTAAAGT
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (32 bp):
GTGTTGCATTCAGATAATGCACAACAGTGCCA
Found at i:93600 original size:19 final size:19
Alignment explanation
Indices: 93545--93603 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
93535 TCAAATCAGA
93545 TTAAAAATAT-TAT-ATATT
1 TTAAAAATATATATAATA-T
*
93563 TTAAATAATA-A-A-AAAAT
1 TTAAA-AATATATATAATAT
93580 TTAAAAATATATATAATAT
1 TTAAAAATATATATAATAT
93599 TTAAA
1 TTAAA
93604 TTTATTTAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
16 4 0.12
17 7 0.21
18 9 0.27
19 13 0.39
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
TTAAAAATATATATAATAT
Found at i:96250 original size:113 final size:113
Alignment explanation
Indices: 95487--96269 Score: 1148
Period size: 113 Copynumber: 7.0 Consensus size: 113
95477 TAGAGTCATT
* ** *
95487 CAAAAGGTTGAATAAGCTCTTCTTATTATGAAC-T-TTC-T-CTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
**** * * * * **
95548 TTATGAACTTTCTCTGTAAAGGTTGATCCATTAAGTGATGAATTCAAG
66 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
* * *
95596 CAAAA-GTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAATTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
**** * * * * **
95660 TTATGAACTCTTTTTGGAAAAGCTAATCCATCAAATGATGAATTCAAG
66 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
*
95708 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
95773 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
66 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
* * *
95821 TAAAAGGTTGAACAAATTCTTCTCATTGTGAACTTCTTCTTCCTTCTTCCGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
95886 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATAGATTTGAG
66 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
95934 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
95999 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
66 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
*
96047 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCCGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
*
96112 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATAGATTTGAG
66 TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
*
96160 TC-AAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCCGATGAGTTCTTCTC
1 -CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
** * *
96224 ATTATGAACTCGAACT-GACACTGTTGATCCATTAAATGATGGATTT
65 ATTATGAACTCGAACTGGA-AAAGTTGATCCATCAAGTGATGGATTT
96270 AAATCTTTGC
Statistics
Matches: 625, Mismatches: 42, Indels: 10
0.92 0.06 0.01
Matches are distributed among these distances:
108 25 0.04
109 6 0.01
110 3 0.00
111 1 0.00
112 68 0.11
113 521 0.83
114 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (113 bp):
CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTCGAACTGGAAAAGTTGATCCATCAAGTGATGGATTTGAG
Found at i:97350 original size:83 final size:83
Alignment explanation
Indices: 97202--97587 Score: 655
Period size: 83 Copynumber: 4.7 Consensus size: 83
97192 GGTTTCATAT
* * *
97202 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCCTCTTCCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCAAA
* *
97267 TTCAATAACTGGTTTTAC
66 TTCAATGATTGGTTTTAC
* *
97285 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATGATCACATTCATCTTTCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCAAA
97350 TTCAATGATTGGTTTTAC
66 TTCAATGATTGGTTTTAC
*
97368 CAAACCAGATCAGATAACTCAAAGAACACTTCTAGAAGATGCTATGAGCACATTCATCTTTCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCAAA
97433 TTCAATGATTGGTTTTAC
66 TTCAATGATTGGTTTTAC
* *
97451 CAAACCAGATCAGATAACTCAAATAACACTTCCAGAAGATGCTATAAGCACATTCATCTTTCAAA
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCAAA
97516 TTCAATGATTGGTTTTAC
66 TTCAATGATTGGTTTTAC
* * *
97534 CAAACCAGATCAGATAAATCAAAGAACACTTTCAGAAGATGCTATGAGTACATT
1 CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATT
97588 GCATTTGTTC
Statistics
Matches: 285, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 285 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.28
Consensus pattern (83 bp):
CAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCAAA
TTCAATGATTGGTTTTAC
Found at i:98750 original size:19 final size:18
Alignment explanation
Indices: 98726--98799 Score: 85
Period size: 18 Copynumber: 3.8 Consensus size: 18
98716 CTTGACCCCC
*
98726 CTTTTTTCTTTTTTTGTTCT
1 CTTTTTT-TTTCTTT-TTCT
98746 CTTTTTTTTTCTCTTTTTTCT
1 C-TTTTTTTT-TC-TTTTTCT
98767 CTTTTTTTTTCTTTTTCT
1 CTTTTTTTTTCTTTTTCT
*
98785 CCTTTTTTTTCTTTT
1 CTTTTTTTTTCTTTT
98800 CTTTTTCTCT
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
18 21 0.43
19 2 0.04
20 11 0.22
21 12 0.24
22 3 0.06
ACGTcount: A:0.00, C:0.18, G:0.01, T:0.81
Consensus pattern (18 bp):
CTTTTTTTTTCTTTTTCT
Found at i:98752 original size:12 final size:11
Alignment explanation
Indices: 98727--98810 Score: 90
Period size: 10 Copynumber: 8.0 Consensus size: 11
98717 TTGACCCCCC
98727 TTTTTTCT-TT
1 TTTTTTCTCTT
98737 TTTTGTTCTCTT
1 TTTT-TTCTCTT
*
98749 TTTTTT-TCTC
1 TTTTTTCTCTT
98759 TTTTTTCTCTT
1 TTTTTTCTCTT
98770 TTTTTT-TC-T
1 TTTTTTCTCTT
*
98779 TTTTCTC-CTT
1 TTTTTTCTCTT
98789 TTTTTTCT-TT
1 TTTTTTCTCTT
98799 TCTTTTTCTCTT
1 T-TTTTTCTCTT
98811 CAAGCATAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 14
0.77 0.05 0.17
Matches are distributed among these distances:
9 7 0.11
10 25 0.40
11 22 0.35
12 8 0.13
ACGTcount: A:0.00, C:0.18, G:0.01, T:0.81
Consensus pattern (11 bp):
TTTTTTCTCTT
Found at i:98753 original size:21 final size:20
Alignment explanation
Indices: 98726--98810 Score: 93
Period size: 21 Copynumber: 4.2 Consensus size: 20
98716 CTTGACCCCC
*
98726 CTTTTTTCTTT-TTTTGTTCT
1 CTTTTTT-TTTCTTTTTTTCT
98746 CTTTTTTTTTCTCTTTTTTCT
1 CTTTTTTTTTCT-TTTTTTCT
*
98767 CTTTTTTTTTCTTTTTCTC-
1 CTTTTTTTTTCTTTTTTTCT
*
98786 CTTTTTTTTCTTTTCTTTTTCT
1 CTTTTTTTT-TCTT-TTTTTCT
98808 CTT
1 CTT
98811 CAAGCATAAT
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
19 12 0.21
20 17 0.30
21 24 0.43
22 3 0.05
ACGTcount: A:0.00, C:0.19, G:0.01, T:0.80
Consensus pattern (20 bp):
CTTTTTTTTTCTTTTTTTCT
Found at i:98755 original size:18 final size:19
Alignment explanation
Indices: 98742--98810 Score: 77
Period size: 19 Copynumber: 3.4 Consensus size: 19
98732 TCTTTTTTTG
98742 TTCTCTTTTTTTTTCTCTTTT
1 TTCTC-TTTTTTTTCTC-TTT
98763 TTCTCTTTTTTTT-TCTTT
1 TTCTCTTTTTTTTCTCTTT
98781 TTCTCCTTTTTTTTCTTTTCTTT
1 TTCT-CTTTTTTTTC---TCTTT
98804 TTCTCTT
1 TTCTCTT
98811 CAAGCATAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
18 7 0.16
19 11 0.26
20 8 0.19
21 5 0.12
22 3 0.07
23 9 0.21
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (19 bp):
TTCTCTTTTTTTTCTCTTT
Found at i:98764 original size:9 final size:9
Alignment explanation
Indices: 98750--98799 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
98740 TGTTCTCTTT
98750 TTTTTTCTC
1 TTTTTTCTC
98759 TTTTTTCTC
1 TTTTTTCTC
*
98768 TTTTTT-TT
1 TTTTTTCTC
98776 TCTTTTTCTCC
1 T-TTTTTCT-C
*
98787 TTTTTTTTC
1 TTTTTTCTC
98796 TTTT
1 TTTT
98800 CTTTTTCTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
8 2 0.06
9 25 0.71
10 7 0.20
11 1 0.03
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTTCTC
Found at i:98796 original size:39 final size:43
Alignment explanation
Indices: 98726--98810 Score: 115
Period size: 41 Copynumber: 2.1 Consensus size: 43
98716 CTTGACCCCC
* *
98726 CTTTTTTCTTTTTTTGTTCTCTTTTTTTTTC-TCT-TTTTTCT
1 CTTTTTTCTTTCTTTGTTCTCCTTTTTTTTCTTCTCTTTTTCT
*
98767 CTTTTTT-TTTCTTT-TTCTCCTTTTTTTTCTTTTCTTTTTCT
1 CTTTTTTCTTTCTTTGTTCTCCTTTTTTTTCTTCTCTTTTTCT
98808 CTT
1 CTT
98811 CAAGCATAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
39 14 0.36
40 8 0.21
41 17 0.44
ACGTcount: A:0.00, C:0.19, G:0.01, T:0.80
Consensus pattern (43 bp):
CTTTTTTCTTTCTTTGTTCTCCTTTTTTTTCTTCTCTTTTTCT
Found at i:106025 original size:15 final size:15
Alignment explanation
Indices: 106002--106033 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
105992 TGAAATGAAT
106002 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
106017 AATGCATGTATGCAA
1 AATGAATGTATGCAA
106032 AA
1 AA
106034 ATGTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:111480 original size:3 final size:3
Alignment explanation
Indices: 111451--111532 Score: 110
Period size: 3 Copynumber: 26.7 Consensus size: 3
111441 TTGGGTTTTG
* * *
111451 TAA TAT TAA TAAA TAA TATA TAT TAA TAA TAA TAA TAA TAA TTA TAA
1 TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
111498 TAA TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
111533 TAAATAACAT
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
3 63 0.91
4 6 0.09
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:111836 original size:18 final size:18
Alignment explanation
Indices: 111814--111869 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
111804 ATCAAATCAG
111814 ATTTAAAAATATTATATA
1 ATTTAAAAATATTATATA
* * *
111832 TTTTAAATAATA-AAAATA
1 ATTTAAA-AATATTATATA
111850 ATTTAAAAATATTATATA
1 ATTTAAAAATATTATATA
111868 AT
1 AT
111870 ATTTAAATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
17 4 0.13
18 22 0.73
19 4 0.13
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTAAAAATATTATATA
Found at i:113739 original size:31 final size:31
Alignment explanation
Indices: 113690--113748 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
113680 GTAAAATTTG
* *
113690 AAAGTTTAGTGACCAAAGTATAAATTTTGGA
1 AAAGTTAAGGGACCAAAGTATAAATTTTGGA
* * *
113721 AAAGTTAAGGGACTAAAGTGTAATTTTT
1 AAAGTTAAGGGACCAAAGTATAAATTTT
113749 AAAACTTATG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.34
Consensus pattern (31 bp):
AAAGTTAAGGGACCAAAGTATAAATTTTGGA
Found at i:116228 original size:26 final size:26
Alignment explanation
Indices: 116192--116247 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
116182 CTTGTATATT
*
116192 TATGTAGCACTTTCGAGTGGAAGTGA
1 TATGTAGCACTTTCGAGTGCAAGTGA
*
116218 TATGTTGCACTTTCGAGTGCAAGTGA
1 TATGTAGCACTTTCGAGTGCAAGTGA
116244 TATG
1 TATG
116248 AGGCACTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (26 bp):
TATGTAGCACTTTCGAGTGCAAGTGA
Found at i:116253 original size:26 final size:26
Alignment explanation
Indices: 116198--116254 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
116188 TATTTATGTA
* **
116198 GCACTTTCGAGTGGAAGTGATATGTT
1 GCACTTTCGAGTGCAAGTGATATGAG
116224 GCACTTTCGAGTGCAAGTGATATGAG
1 GCACTTTCGAGTGCAAGTGATATGAG
116250 GCACT
1 GCACT
116255 ATAAGTGCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (26 bp):
GCACTTTCGAGTGCAAGTGATATGAG
Found at i:126820 original size:17 final size:18
Alignment explanation
Indices: 126786--126827 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
126776 ATTATGCACG
126786 AAATAAAATAAGAAT-AA
1 AAATAAAATAAGAATAAA
*
126803 AAATAAAATAA-AGGTAAA
1 AAATAAAATAAGA-ATAAA
126821 AAATAAA
1 AAATAAA
126828 TTTATTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 12 0.55
18 9 0.41
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (18 bp):
AAATAAAATAAGAATAAA
Found at i:133631 original size:54 final size:54
Alignment explanation
Indices: 133529--134466 Score: 1221
Period size: 54 Copynumber: 17.4 Consensus size: 54
133519 ACTAAGTGTA
* * * *
133529 GTATAGGCACTTTGTGTTCAA-CCAC-GAAATTCATCATTTGTTGATGAACCACC
1 GTATAGGCACTATGTGTGCAACCCACAG-AATTCATCATATGTTGATGAACGACC
*
133582 GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGAAC
1 GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
* * *
133636 GTATAGGCACTATATGTGCAACCCACAGAATTCATCATATATTGATGAACGATC
1 GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
* *
133690 GTACAGGCACTA--TGTGCAACCCACAGAATTCATCATATGTTGATAAACGACC
1 GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
* * *
133742 GTATTGGCACTATGTGTACAACCCACAGAATTCATCATATGTTGATGAACCACC
1 GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
* *
133796 GTATAGGCACCATGTGTACAACCCACAGAATTCATCATATGTTGATGAACGACC
1 GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
* * * * * *
133850 GTATAGGCACTATGTGTGCAACCCAAAAAATTCATCATATTTTTATAAACAACC
1 GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
* * * * *
133904 GTATAGACACTATGTGTGCAACCAACATAATTCATCATAGGTTGATGAATGACC
1 GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
* * * *
133958 GTATAGGCACTATGTGTGCAA-CCAAATAATTCATCATATGTTTATGAACGATC
1 GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
* *
134011 GTATAGGCATTATGTGTGCAACCCACGGAATTCATCATATGTTGATGAACGACC
1 GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
** *
134065 GTATAGGCACTATGTGTGCAACCCA-AGGAATTCATCATATGTTGATGAATAATC
1 GTATAGGCACTATGTGTGCAACCCACA-GAATTCATCATATGTTGATGAACGACC
* * * * *
134119 ATATAGGAACTATGTGTGCAACCCACGGAATTGATCATATGTTAATGAACGACC
1 GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
* * *
134173 GTAT-GGACACTATGTGTGCAACCTACAGAATTCATCATATATTGATAAACGACC
1 GTATAGG-CACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
* *
134227 GTATAGACACTATGTGTGCAACTCAC-GAAATTCATCATATGTTGATGAACGACC
1 GTATAGGCACTATGTGTGCAACCCACAG-AATTCATCATATGTTGATGAACGACC
* * ** * *
134281 GTATAGGCACTTTGTGTGCAACTCATGGAATTGATCATATGTTGATGAACGACT
1 GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
* *
134335 GTATAGGCACTATATGTGCAACCCA-TGTAATTCATCATATGTTGATGAACGACC
1 GTATAGGCACTATGTGTGCAACCCACAG-AATTCATCATATGTTGATGAACGACC
* * * * *
134389 ATATAGGCATTATGTGTGCAACCCAC-GAAATTCATCATATATTGATGAACAATC
1 GTATAGGCACTATGTGTGCAACCCACAG-AATTCATCATATGTTGATGAACGACC
*
134443 GTATAGGCACTAAGTGTGCAACCC
1 GTATAGGCACTATGTGTGCAACCC
134467 CTTTTAAATG
Statistics
Matches: 774, Mismatches: 98, Indels: 25
0.86 0.11 0.03
Matches are distributed among these distances:
52 47 0.06
53 69 0.09
54 655 0.85
55 3 0.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28
Consensus pattern (54 bp):
GTATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACC
Found at i:133782 original size:27 final size:28
Alignment explanation
Indices: 133706--133837 Score: 68
Period size: 27 Copynumber: 4.9 Consensus size: 28
133696 GCACTATGTG
133706 CAACCCACAGAATTCATCATATGTTGATA
1 CAACCCACAGAATTCATCATATG-TGATA
* * *
133735 -AA-CGACCGTATTGGCA-C-TATGTG-TA
1 CAACCCACAGAATT--CATCATATGTGATA
133760 CAACCCACAGAATTCATCATATGTTGAT-
1 CAACCCACAGAATTCATCATATG-TGATA
* * * * *
133788 GAA-CCACCGTA-T-AGGCACCATGTG-TA
1 CAACCCACAGAATTCA-TCA-TATGTGATA
133814 CAACCCACAGAATTCATCATATGT
1 CAACCCACAGAATTCATCATATGT
133838 TGATGAACGA
Statistics
Matches: 73, Mismatches: 16, Indels: 30
0.61 0.13 0.25
Matches are distributed among these distances:
25 6 0.08
26 12 0.16
27 41 0.56
28 10 0.14
29 4 0.05
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (28 bp):
CAACCCACAGAATTCATCATATGTGATA
Found at i:143538 original size:18 final size:18
Alignment explanation
Indices: 143515--143563 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
143505 GCTATACAAG
143515 TGTGACTATTCTAAGACT
1 TGTGACTATTCTAAGACT
*
143533 TGTGACTATTGTAAGACT
1 TGTGACTATTCTAAGACT
*
143551 TGTGCCTATTCTA
1 TGTGACTATTCTA
143564 GATATAAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.41
Consensus pattern (18 bp):
TGTGACTATTCTAAGACT
Found at i:143984 original size:77 final size:79
Alignment explanation
Indices: 143857--144009 Score: 188
Period size: 77 Copynumber: 2.0 Consensus size: 79
143847 ATATAGTAAG
* * *
143857 TAAACATTGAAAGAATGTGATTTTGATTACAAATCATTTAATTGATATTTAATTCGGAA-TAATT
1 TAAAAATTGAAAGAATGTAATTTAGATTACAAATCATTTAATTGATATTTAATT-GGAATTAATT
143921 AAATAAGATTTTAAA
65 AAATAAGATTTTAAA
* * * *
143936 TAAAAATT-AAAGATTGTAATTTAGATTATAATTC-TTTAA-TGTATATTTAATTTGAATTAATT
1 TAAAAATTGAAAGAATGTAATTTAGATTACAAATCATTTAATTG-ATATTTAATTGGAATTAATT
*
143998 AAATAATATTTT
65 AAATAAGATTTT
144010 TTATTAATTC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
76 5 0.08
77 31 0.48
78 21 0.33
79 7 0.11
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (79 bp):
TAAAAATTGAAAGAATGTAATTTAGATTACAAATCATTTAATTGATATTTAATTGGAATTAATTA
AATAAGATTTTAAA
Found at i:144313 original size:35 final size:35
Alignment explanation
Indices: 144263--144332 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
144253 CCATTATAAG
*
144263 TATTCGCATCCTTTCCTACCGATTTTGATTTTTCC
1 TATTCGCATCATTTCCTACCGATTTTGATTTTTCC
* *
144298 TATTCGCATCATTTCCTCCCGATTTTGGTTTTTCC
1 TATTCGCATCATTTCCTACCGATTTTGATTTTTCC
144333 GTACTTTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.13, C:0.29, G:0.10, T:0.49
Consensus pattern (35 bp):
TATTCGCATCATTTCCTACCGATTTTGATTTTTCC
Found at i:145017 original size:2 final size:2
Alignment explanation
Indices: 145012--145044 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
145002 GATGTCAGAA
145012 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
145045 GATTTTCTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:148196 original size:15 final size:16
Alignment explanation
Indices: 148176--148206 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
148166 ACTTTTAAGT
148176 AATATTAAT-AGTATA
1 AATATTAATGAGTATA
148191 AATATTAATGAGTATA
1 AATATTAATGAGTATA
148207 TTAACATTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
AATATTAATGAGTATA
Found at i:148494 original size:54 final size:54
Alignment explanation
Indices: 148432--148830 Score: 435
Period size: 54 Copynumber: 7.4 Consensus size: 54
148422 CTAAGTGTAC
* * *
148432 TATAGGCACTATGTGTGCAACCTACATAATTCATCATATGTTAATGAACGACCG
1 TATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACCG
* * * * *
148486 TATAGGCACTATGTGTGTAACTCAC-GAAATTCAACATATGTTGATGAATGACTG
1 TATAGGCACTATGTGTGCAACCCACAG-AATTCATCATATGTTGATGAACGACCG
* * * *
148540 TATAGTCACTATGTGTGAAACCCACGGAATTCATAATATGTTGATGAACGACCG
1 TATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACCG
* * * * *
148594 TATAAGAACAATGTGTGCAACCCACAGAAGTCATCATATGTTGATGAAC-ATCG
1 TATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACCG
* * * * * *
148647 ATATAGGCATTATGTATGCAACCCAAATAATTCATCATATTTTGGTGAACGACCG
1 -TATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACCG
* *
148702 TATTGGTACTATGTGTGCAACCCAC-GAAATTCATCATATGTTGATGAACGACCG
1 TATAGGCACTATGTGTGCAACCCACAG-AATTCATCATATGTTGATGAACGACCG
* * * * * * *
148756 TATAGGCATTATGTTTGCAACCCATAGAATTCATTATATATTGATGAACAATCG
1 TATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACCG
* * *
148810 TATAAGCAATAAGTGTGCAAC
1 TATAGGCACTATGTGTGCAAC
148831 TCCTTTTAAA
Statistics
Matches: 283, Mismatches: 56, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
53 3 0.01
54 275 0.97
55 5 0.02
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (54 bp):
TATAGGCACTATGTGTGCAACCCACAGAATTCATCATATGTTGATGAACGACCG
Found at i:148906 original size:49 final size:49
Alignment explanation
Indices: 148840--148936 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 49
148830 CTCCTTTTAA
* * *
148840 ATGCGTAATGGTGCATTTTGGGTAGAAAGGGGCCACTAATGCAAGTTAG
1 ATGCCTAACGGTGCATTTTGGATAGAAAGGGGCCACTAATGCAAGTTAG
* * *
148889 ATGCCTAACGGTGCATTTTTGATAGAAAGGTGCCCCTAATGCAAGTTA
1 ATGCCTAACGGTGCATTTTGGATAGAAAGGGGCCACTAATGCAAGTTA
148937 TATGAAGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (49 bp):
ATGCCTAACGGTGCATTTTGGATAGAAAGGGGCCACTAATGCAAGTTAG
Found at i:148953 original size:49 final size:49
Alignment explanation
Indices: 148851--148954 Score: 118
Period size: 49 Copynumber: 2.1 Consensus size: 49
148841 TGCGTAATGG
* *** **
148851 TGCATTTTGGGTAGAAAGGGGCCACTAATGCAAGTTAGATGCCTAACGG
1 TGCATTTTGGATAGAAAGGGGCCACTAATGCAAGTTAGATGAAGAACAA
* * * *
148900 TGCATTTTTGATAGAAAGGTGCCCCTAATGCAAGTTATATGAAGAACAA
1 TGCATTTTGGATAGAAAGGGGCCACTAATGCAAGTTAGATGAAGAACAA
148949 TGCATT
1 TGCATT
148955 ATCGGCTTGA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (49 bp):
TGCATTTTGGATAGAAAGGGGCCACTAATGCAAGTTAGATGAAGAACAA
Found at i:153894 original size:40 final size:40
Alignment explanation
Indices: 153783--153925 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
153773 GCGATCAGTC
*
153783 GTGCCCACCATATGCA-TCGAAGTGC-TTACACATAAGGTT
1 GTGCCCACCATATGCACT-GAAGTGCACTACACATAAGGTT
* * *
153822 TTTCCCACCATA-GCACCGAAGTGCACTACACATAAGGTT
1 GTGCCCACCATATGCACTGAAGTGCACTACACATAAGGTT
* * *
153861 GTGCCCACCATATCCACTGAAGTGCAGTACACATAAGGTC
1 GTGCCCACCATATGCACTGAAGTGCACTACACATAAGGTT
* *
153901 GTGCCCACTATATGCATTGAAGTGC
1 GTGCCCACCATATGCACTGAAGTGC
153926 TTAACAAATA
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 10 0.11
39 33 0.38
40 45 0.51
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
GTGCCCACCATATGCACTGAAGTGCACTACACATAAGGTT
Found at i:160080 original size:20 final size:20
Alignment explanation
Indices: 160043--160081 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
160033 TTTCTAGCAC
* *
160043 ATGCAACTATATGCTCCTAA
1 ATGCAACTACATGATCCTAA
*
160063 ATGCATCTACATGATCCTA
1 ATGCAACTACATGATCCTA
160082 TATGAGCTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.26, G:0.10, T:0.31
Consensus pattern (20 bp):
ATGCAACTACATGATCCTAA
Found at i:168005 original size:20 final size:20
Alignment explanation
Indices: 167968--168006 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
167958 TTTCCACCAC
* *
167968 ATGCAACTATATGCTCCTAA
1 ATGCAACTACATGATCCTAA
*
167988 ATGCATCTACATGATCCTA
1 ATGCAACTACATGATCCTA
168007 TATGAGCTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.26, G:0.10, T:0.31
Consensus pattern (20 bp):
ATGCAACTACATGATCCTAA
Found at i:170106 original size:39 final size:40
Alignment explanation
Indices: 169979--170134 Score: 228
Period size: 40 Copynumber: 4.0 Consensus size: 40
169969 ACTGTAGTGC
* * *
169979 TTACACATAAGGTCGCGCCCACCATATGCACCAAAGTTTA
1 TTACACATAAGGTCGTGCCTACCATATGCACCAAAGTGTA
*
170019 TTACACATAAGGTCGTG-CTCACCATATACACCAAAGTGTA
1 TTACACATAAGGTCGTGCCT-ACCATATGCACCAAAGTGTA
*
170059 TTACACATAAGGTCGTGCCTACCATATGCA-CTAAGTGTA
1 TTACACATAAGGTCGTGCCTACCATATGCACCAAAGTGTA
*
170098 TTACACATAAGGTCATGCCTACCATATGCA-CAAAGTG
1 TTACACATAAGGTCGTGCCTACCATATGCACCAAAGTG
170135 CTTAATCGAT
Statistics
Matches: 106, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 44 0.42
40 60 0.57
41 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (40 bp):
TTACACATAAGGTCGTGCCTACCATATGCACCAAAGTGTA
Found at i:173182 original size:23 final size:23
Alignment explanation
Indices: 173156--173206 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
173146 TACATTGGAG
173156 TGCCTTACTTTAACTTGTAATAA
1 TGCCTTACTTTAACTTGTAATAA
173179 TGCCTTACTTTAACTTGTAATAA
1 TGCCTTACTTTAACTTGTAATAA
173202 TGCCT
1 TGCCT
173207 CACTAGGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (23 bp):
TGCCTTACTTTAACTTGTAATAA
Found at i:176998 original size:24 final size:24
Alignment explanation
Indices: 176971--177085 Score: 169
Period size: 24 Copynumber: 4.8 Consensus size: 24
176961 TCGATTTGAT
*
176971 TTCTGATCTGATACTTGATATGGA
1 TTCTGATCTGATACTTGACATGGA
176995 TTCTGATCTGATA-TCTGACATGGA
1 TTCTGATCTGATACT-TGACATGGA
*
177019 TTCTGATCTGATACTTGACTTGGA
1 TTCTGATCTGATACTTGACATGGA
*
177043 TTCTGATCTGATACTTGACCTGGA
1 TTCTGATCTGATACTTGACATGGA
* *
177067 TTTTGATATGATACTTGAC
1 TTCTGATCTGATACTTGAC
177086 GTGAATTATG
Statistics
Matches: 84, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
23 1 0.01
24 82 0.98
25 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (24 bp):
TTCTGATCTGATACTTGACATGGA
Found at i:177097 original size:24 final size:24
Alignment explanation
Indices: 176974--177102 Score: 134
Period size: 24 Copynumber: 5.4 Consensus size: 24
176964 ATTTGATTTC
** *
176974 TGATCTGATACTTGATATGGATTC
1 TGATCTGATACTTGACCTGGATTA
* *
176998 TGATCTGATA-TCTGACATGGATTC
1 TGATCTGATACT-TGACCTGGATTA
* *
177022 TGATCTGATACTTGACTTGGATTC
1 TGATCTGATACTTGACCTGGATTA
*
177046 TGATCTGATACTTGACCTGGATTT
1 TGATCTGATACTTGACCTGGATTA
* * *
177070 TGATATGATACTTGACGTGAATTA
1 TGATCTGATACTTGACCTGGATTA
*
177094 TGATTTGAT
1 TGATCTGAT
177103 TTTTGATATA
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
23 1 0.01
24 92 0.98
25 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (24 bp):
TGATCTGATACTTGACCTGGATTA
Found at i:181366 original size:18 final size:18
Alignment explanation
Indices: 181343--181380 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
181333 CCTTTAATTT
181343 GTTGATTTGATCGCACAC
1 GTTGATTTGATCGCACAC
*
181361 GTTGATTTGATCGCAGAC
1 GTTGATTTGATCGCACAC
181379 GT
1 GT
181381 GTAAAGCACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.34
Consensus pattern (18 bp):
GTTGATTTGATCGCACAC
Found at i:184264 original size:37 final size:37
Alignment explanation
Indices: 184220--184378 Score: 159
Period size: 37 Copynumber: 4.4 Consensus size: 37
184210 TAATATAATG
*
184220 TAGTTTTTGAAAATATTTTTTGAAAACGTATAATATA
1 TAGTTTTTGAAAATATTTTTTGAAAACATATAATATA
**
184257 TAGTTTTTAGAAAA-CGTTTTTGAAAACATATAATATA
1 TAGTTTTT-GAAAATATTTTTTGAAAACATATAATATA
* *
184294 TAGTTTTTAAAAAT-TGGTTTTTGAAAATATAT-A-ATA
1 TAGTTTTTGAAAATAT--TTTTTGAAAACATATAATATA
** *
184330 T-GTTTTTGAAAATATTTGTTAAAAAACATATATTATA
1 TAGTTTTTGAAAATATTT-TTTGAAAACATATAATATA
*
184367 TA-ATTTTGAAAA
1 TAGTTTTTGAAAA
184379 CATAGTTTTA
Statistics
Matches: 101, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
34 2 0.02
35 21 0.21
36 9 0.09
37 50 0.50
38 19 0.19
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.45
Consensus pattern (37 bp):
TAGTTTTTGAAAATATTTTTTGAAAACATATAATATA
Found at i:184392 original size:37 final size:36
Alignment explanation
Indices: 184274--184392 Score: 89
Period size: 37 Copynumber: 3.2 Consensus size: 36
184264 TAGAAAACGT
* * * * *
184274 TTTTGAAAACATATAATATATAGTTTTTAAAAATTGG
1 TTTTAAAAACATATATTATATAATTTTGAAAAA-TAG
** * ** *
184311 TTTTTGAAA-ATATATAATATGTTTTTG-AAAATAT
1 TTTTAAAAACATATATTATATAATTTTGAAAAATAG
184345 TTGTTAAAAAACATATATTATATAATTTTGAAAACATAG
1 TT-TT-AAAAACATATATTATATAATTTTGAAAA-ATAG
184384 TTTTAAAAA
1 TTTTAAAAA
184393 TCGATTTTTG
Statistics
Matches: 62, Mismatches: 15, Indels: 10
0.71 0.17 0.11
Matches are distributed among these distances:
34 3 0.05
35 6 0.10
36 16 0.26
37 27 0.44
38 5 0.08
39 5 0.08
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.44
Consensus pattern (36 bp):
TTTTAAAAACATATATTATATAATTTTGAAAAATAG
Found at i:184494 original size:13 final size:12
Alignment explanation
Indices: 184459--184498 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
184449 ATTATATAGT
184459 TTTTATTA-TTA
1 TTTTATTATTTA
184470 TATTTATTATTTA
1 T-TTTATTATTTA
184483 TTTTATTGATTTA
1 TTTTATT-ATTTA
184496 TTT
1 TTT
184499 CAGGTCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 1 0.04
12 13 0.50
13 12 0.46
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (12 bp):
TTTTATTATTTA
Found at i:185636 original size:19 final size:20
Alignment explanation
Indices: 185609--185648 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
185599 AAATTGATCC
185609 TTTAAA-TTTTTATTTATTT
1 TTTAAATTTTTTATTTATTT
* *
185628 TTTAGATTTTTTATTTCTTT
1 TTTAAATTTTTTATTTATTT
185648 T
1 T
185649 AAAATTTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75
Consensus pattern (20 bp):
TTTAAATTTTTTATTTATTT
Found at i:200635 original size:149 final size:148
Alignment explanation
Indices: 200360--200653 Score: 525
Period size: 149 Copynumber: 2.0 Consensus size: 148
200350 AAATACTCAA
* *
200360 TTCAGTTTCTAAAATAGTTGGCTCGAAATTTTTTCAATTTGAGTTTATAAAATTTAAATCAAGTC
1 TTCAGTTTATAAAATAGTTGACTCGAAATTTTTTCAATTTGAGTTTATAAAATTTAAATCAAGTC
* *
200425 GAATTGAATTGAATTTTCGAGTTTCTTTTTAAATTTAATTATAAATATTTATCATATTATAATAT
66 GAATTGAATTGAATTTTCGAGTTTCTTTTTAAATTTAATTATAAATATTTATAATACTATAATAT
200490 TATTTGATTCTAATTCAG
131 TATTTGATTCTAATTCAG
* *
200508 TTCAGTTTATAAAATAGTTGACTCGAATTTTTTTTCGATTTGAGTTTATAAAATTTAAATCAAGT
1 TTCAGTTTATAAAATAGTTGACTCGAA-ATTTTTTCAATTTGAGTTTATAAAATTTAAATCAAGT
200573 CGAATTGAATTGAATTTTCGAGTTTCTTTTTAAATTTAATTATAAATATTTATAATACTATAATA
65 CGAATTGAATTGAATTTTCGAGTTTCTTTTTAAATTTAATTATAAATATTTATAATACTATAATA
200638 TTATTTGATTCTAATT
130 TTATTTGATTCTAATT
200654 TAAATACTTT
Statistics
Matches: 139, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
148 25 0.18
149 114 0.82
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.48
Consensus pattern (148 bp):
TTCAGTTTATAAAATAGTTGACTCGAAATTTTTTCAATTTGAGTTTATAAAATTTAAATCAAGTC
GAATTGAATTGAATTTTCGAGTTTCTTTTTAAATTTAATTATAAATATTTATAATACTATAATAT
TATTTGATTCTAATTCAG
Found at i:201936 original size:37 final size:37
Alignment explanation
Indices: 201841--201950 Score: 114
Period size: 37 Copynumber: 3.0 Consensus size: 37
201831 AGTTTTTGGT
* * * *
201841 CAACCCGACCCAAAATTTATACATCCTCCACCCGACC
1 CAACCCGACCCAAAAATTATATATCTTCCACCCAACC
* * * * *
201878 CGACCCAACTCGAAAATTATATATCTTCCACCTAACC
1 CAACCCGACCCAAAAATTATATATCTTCCACCCAACC
*
201915 CAACCCGACCCAAAAAATATATAT-TCTCCACCCAAC
1 CAACCCGACCCAAAAATTATATATCT-TCCACCCAAC
201951 TCTGACCCGA
Statistics
Matches: 57, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
36 1 0.02
37 56 0.98
ACGTcount: A:0.36, C:0.40, G:0.05, T:0.19
Consensus pattern (37 bp):
CAACCCGACCCAAAAATTATATATCTTCCACCCAACC
Found at i:208143 original size:40 final size:40
Alignment explanation
Indices: 208088--208170 Score: 148
Period size: 40 Copynumber: 2.1 Consensus size: 40
208078 TTATTCCCTC
*
208088 TGCCAAAACCATGTTCGTTAGTCTTGATATTGTATACCTT
1 TGCCAAAACCATGTTCGTTAGTCCTGATATTGTATACCTT
*
208128 TGCCAAAATCATGTTCGTTAGTCCTGATATTGTATACCTT
1 TGCCAAAACCATGTTCGTTAGTCCTGATATTGTATACCTT
208168 TGC
1 TGC
208171 AAGCATACAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (40 bp):
TGCCAAAACCATGTTCGTTAGTCCTGATATTGTATACCTT
Found at i:214865 original size:15 final size:15
Alignment explanation
Indices: 214845--214875 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
214835 TTGATTTCTC
214845 TTCATAATTAACATA
1 TTCATAATTAACATA
214860 TTCATAATTAACATA
1 TTCATAATTAACATA
214875 T
1 T
214876 ACACTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (15 bp):
TTCATAATTAACATA
Found at i:217211 original size:31 final size:31
Alignment explanation
Indices: 217133--217247 Score: 101
Period size: 31 Copynumber: 3.7 Consensus size: 31
217123 ATTTTTATCA
* * * * * *
217133 TAACTTTGAAAAATATATCTCATTTTTATTT
1 TAACTTTTAAAAATATATTTTATTATAATTG
* *
217164 TAAC--TTAAAAACATATTTTATTCTAATATG
1 TAACTTTTAAAAATATATTTTATTATAAT-TG
*
217194 -AACTTTTAAAAATATATTTTATTATCATTG
1 TAACTTTTAAAAATATATTTTATTATAATTG
*
217224 TACCTTTTAAAAATATAATTTTAT
1 TAACTTTTAAAAATAT-ATTTTAT
217248 CTTAATTTAT
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
29 20 0.29
30 3 0.04
31 38 0.56
32 7 0.10
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.49
Consensus pattern (31 bp):
TAACTTTTAAAAATATATTTTATTATAATTG
Found at i:217333 original size:31 final size:32
Alignment explanation
Indices: 217295--217361 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
217285 ATTTTAAAGA
*
217295 TTTTTAAAA-TAAAATAAAAATAAAATATATT
1 TTTTTAAAATTAAAATAAAAATAAAATATAAT
* *
217326 TTTTTAAAATTTAAGATATAAATAAAATATAAT
1 TTTTTAAAA-TTAAAATAAAAATAAAATATAAT
217359 TTT
1 TTT
217362 AAGTTAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 9 0.29
33 22 0.71
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (32 bp):
TTTTTAAAATTAAAATAAAAATAAAATATAAT
Found at i:217339 original size:38 final size:40
Alignment explanation
Indices: 217273--217357 Score: 104
Period size: 40 Copynumber: 2.1 Consensus size: 40
217263 ATATTGTAAG
217273 AATAAAATATATATTTTAAAGATTTTTAAAATA-AAATAAA
1 AATAAAATATATATTTTAAAGA-TTTTAAAATATAAATAAA
* *
217313 AATAAAATATATTTTTTTAAA-A-TTTAAGATATAAATAAA
1 AATAAAATATA-TATTTTAAAGATTTTAAAATATAAATAAA
217352 ATATAA
1 A-ATAA
217358 TTTTAAGTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
38 8 0.20
39 8 0.20
40 16 0.40
41 8 0.20
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (40 bp):
AATAAAATATATATTTTAAAGATTTTAAAATATAAATAAA
Found at i:221894 original size:54 final size:55
Alignment explanation
Indices: 221750--221918 Score: 234
Period size: 54 Copynumber: 3.1 Consensus size: 55
221740 GACACTAAGG
* *
221750 GTGCAAAAACTTAAGAAATCCATACTAAGTGTATGAATTT-TGGTATGGGCACTTTGT
1 GTGC-AAAAC-TAAGAAATCCATACTAAGTGTATGAATTTCT-GTATGGGAACTATGT
* *
221807 GTGCAAAACTAAGAAATTCATACCAAGTGTATGAATTTCTGTATGGGAACTATGT
1 GTGCAAAACTAAGAAATCCATACTAAGTGTATGAATTTCTGTATGGGAACTATGT
* * *
221862 GTGC-AAACTAAGAAATCCATACTAACTGTATGAATTTCTGTATGGGAAATATAT
1 GTGCAAAACTAAGAAATCCATACTAAGTGTATGAATTTCTGTATGGGAACTATGT
221916 GTG
1 GTG
221919 AAATTATCAG
Statistics
Matches: 102, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
54 48 0.47
55 44 0.43
56 6 0.06
57 4 0.04
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (55 bp):
GTGCAAAACTAAGAAATCCATACTAAGTGTATGAATTTCTGTATGGGAACTATGT
Found at i:222338 original size:81 final size:82
Alignment explanation
Indices: 222190--222669 Score: 514
Period size: 81 Copynumber: 5.9 Consensus size: 82
222180 CTTTGAGGCC
** * * * *
222190 TAGCTGTGCATTTGATAGAAATGTGTCAATTATGCTAGTTAGACGAACAATTAAAGACCGTTGAG
1 TAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAG
*
222255 TAAAAGAAATAAATAACA
66 TAAAAG-AATAAATGACA
* * *
222273 TAG-T-TGCATTTGGTAGAAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCATTTAG
1 TAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAG
*
222336 T-AAA-AAT-AATGGTC-
66 TAAAAGAATAAAT-GACA
* * *
222350 TAGCTATGCATTTGGCAGAAAGCTGTCAATTATGCCAGTTAG-TCGAACGATTAAACACCGTTGA
1 TAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGAT-GAACGATTAAAGACCGTTGA
* * *
222414 GTAAAAG-ATAATTGGCC
65 GTAAAAGAATAAATGACA
* * * * * * *
222431 TAGCTGTGCATTTGGCAGAAAGGTGTCAATTATTCTAGTTAGATAAATGGTTAAAGACCGCTAAG
1 TAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAG
* * *
222496 TAAAA-TATAAATGTCC
66 TAAAAGAATAAATGACA
* * * **
222512 TAGCTGTGCATTTGGCAGAAATGTGTCAATTATGCTAGTTAGATGAACGGTTAAAGGTCGTTGAG
1 TAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAG
222577 TAAAAG-ATAAATGACA
66 TAAAAGAATAAATGACA
* * * * *
222593 TAGTTGTGCATTTTGCAGAAATGTGTCAATTATTCCAGTTAGATGAACGATTAAAGGACTGTTGA
1 TAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAA-GACCGTTGA
222658 GTAAAAG-ATAAA
65 GTAAAAGAATAAA
222670 GGAATTATTT
Statistics
Matches: 339, Mismatches: 46, Indels: 25
0.83 0.11 0.06
Matches are distributed among these distances:
77 6 0.02
78 6 0.02
79 53 0.16
80 10 0.03
81 241 0.71
82 20 0.06
83 3 0.01
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (82 bp):
TAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGATTAAAGACCGTTGAG
TAAAAGAATAAATGACA
Found at i:227351 original size:53 final size:55
Alignment explanation
Indices: 227250--227397 Score: 205
Period size: 53 Copynumber: 2.7 Consensus size: 55
227240 ATGGCACTAA
** *
227250 GTGTGCAAAAACATAAGAAATTCATACTAAGTGTATGAATTTTGGTATGGGCA-CTTT
1 GTGTGC-AAAAC-TAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCAGC-AT
227307 GTGTGCAAAACTAAGAAATTCATACT-A-TGTATGAATTTCCGTATGGGCAGCAT
1 GTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCAGCAT
*
227360 GTGTGC-AAACTAAGAAATCCATACTAAGTGTATGAATT
1 GTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATT
227398 GTTGTATGAG
Statistics
Matches: 84, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
52 18 0.21
53 28 0.33
54 12 0.14
55 15 0.18
56 5 0.06
57 6 0.07
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (55 bp):
GTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCAGCAT
Found at i:227836 original size:81 final size:80
Alignment explanation
Indices: 227690--228113 Score: 486
Period size: 81 Copynumber: 5.3 Consensus size: 80
227680 CCTTTGAGGC
* * * *
227690 CTAGGTGTGCATTTGGCAGAAAAGTGTCAATTATGCCAGTTAGATGATC-GTTTAAACACCGTTG
1 CTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAG-TTAAAGACCGTTG
227754 AGTAAAAGATAAATGG
65 AGTAAAAGATAAATGG
* * * ***
227770 CATAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGTCAGTCAGATGAACAGTTAGAGATTATTG
1 C-TAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAAGACCGTTG
*
227835 AGTAAAAGATAAGTGG
65 AGTAAAAGATAAATGG
* * * *
227851 TCTAGCTGTGTATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGATCGTTG
1 -CTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAAGACCGTTG
*
227916 AGTAAAAGATAACTGG
65 AGTAAAAGATAAATGG
* * *
227932 CCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTGTGCCAATTAGATGAACGGTTAAAGACCGTTG
1 -CTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAAGACCGTTG
227997 AGTAAAAGATAAATGG
65 AGTAAAAGATAAATGG
* * * *
228013 CTGGCCTCGTTGTGCATTTGGCAAAAATGTGTTAATTATGCCAGTTAGATG-A-A--TAAAGA-C
1 CTAG---C--TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAAGACC
228073 GTTGAGTAAAAG--AAATGG
61 GTTGAGTAAAAGATAAATGG
*
228091 CCTCGCTGTGCATTTGGCAGAAA
1 -CTAGCTGTGCATTTGGCAGAAA
228114 TGTAGTTAGA
Statistics
Matches: 299, Mismatches: 36, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
74 16 0.05
76 1 0.00
78 6 0.02
79 3 0.01
80 17 0.06
81 216 0.72
82 2 0.01
83 1 0.00
84 1 0.00
85 36 0.12
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (80 bp):
CTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAAGACCGTTGA
GTAAAAGATAAATGG
Found at i:227980 original size:162 final size:158
Alignment explanation
Indices: 227690--228272 Score: 566
Period size: 162 Copynumber: 3.7 Consensus size: 158
227680 CCTTTGAGGC
* * * * *
227690 CTAGGTGTGCATTTGGCAGAAAAGTGTCAATTATGCCAGTTAGATGATCGTTTAAACACCGTTGA
1 CTAGCTGTGTATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACG-TTAAAGA-CGTTGA
* * *
227755 GTAAAAGATAAATGGCATAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGTCAGTCAGATGAAC
64 GTAAAAGAT-AATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAATCAGATGAAC
* ** *
227820 AGTTAGAGATTATTGAGTAAAAGATAAGTGG
128 AGTTAAAGACCATTGAGTAAAAGATAAATGG
227851 TCTAGCTGTGTATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGATCGTTG
1 -CTAGCTGTGTATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAAC-GTTAAAGA-CGTTG
* *
227916 AGTAAAAGATAACTGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTGTGCCAATTAGATGAA
63 AGTAAAAGATAA-TGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAATCAGATGAA
* *
227981 CGGTTAAAGACCGTTGAGTAAAAGATAAATGG
127 CAGTTAAAGACCATTGAGTAAAAGATAAATGG
* * *
228013 CTGGCCTCGTTGTGCATTTGGCAAAAATGTGTTAATTATGCCAGTTAGATGAA---TAAAGACGT
1 CTAG-CT-G-TGT--ATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGTTAAAGACGT
* *
228075 TGAGTAAAAGA-AATGGCCTCGCTGTGCATTTGGCAGAAA--TGT-AGTTA-G---A--A-A-G-
61 TGAGTAAAAGATAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAATCAGATGA
*
228127 ---GTTAAAGA-CGTTGAGTAAAAGATAAA---
126 ACAGTTAAAGACCATTGAGTAAAAGATAAATGG
* *
228153 -TAGCTATGTATTTGGCAGAAATATGTCAATTATGCCAGTTAGATAGATGAACAGTTAAAGACCG
1 CTAGCTGTGTATTTGGCAGAAATGTGTCAATTATGCCAG-T---TAGATGAAC-GTTAAAGA-CG
* * * * *
228217 TTGAGTAAAAGATAAATGACCTAGCTGTGCATTTGGAAAAAAAGTGTCAATCATGC
60 TTGAGTAAAAGAT-AATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGC
228273 AAGTTAGATG
Statistics
Matches: 364, Mismatches: 34, Indels: 58
0.80 0.07 0.13
Matches are distributed among these distances:
134 26 0.07
135 1 0.00
136 3 0.01
138 10 0.03
139 2 0.01
142 6 0.02
143 32 0.09
144 8 0.02
145 24 0.07
147 3 0.01
148 4 0.01
149 2 0.01
150 1 0.00
152 1 0.00
155 1 0.00
156 3 0.01
157 3 0.01
159 25 0.07
160 2 0.01
161 19 0.05
162 147 0.40
163 2 0.01
164 3 0.01
166 36 0.10
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (158 bp):
CTAGCTGTGTATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAACGTTAAAGACGTTGAGT
AAAAGATAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAATCAGATGAACAGT
TAAAGACCATTGAGTAAAAGATAAATGG
Found at i:228278 original size:85 final size:79
Alignment explanation
Indices: 228127--228281 Score: 195
Period size: 85 Copynumber: 1.9 Consensus size: 79
228117 AGTTAGAAAG
* * * * *
228127 GTTAAAGACGTTGAGTAAAAGATAAATAGCTATGTATTTGGCAGAAATATGTCAATTATGCCAGT
1 GTTAAAGACGTTGAGTAAAAGATAAATACCTATGTATTTGGCAAAAAAATGTCAATCATGCAAGT
228192 TAGATAGATGAACA
66 TAGATAGATGAACA
228206 GTTAAAGACCGTTGAGTAAAAGATAAATGACCTAGCTGTGCATTTGG-AAAAAAAGTGTCAATCA
1 GTTAAAGA-CGTTGAGTAAAAGATAAAT-ACCTA--TGT--ATTTGGCAAAAAAA-TGTCAATCA
228270 TGCAAGTTAGAT
59 TGCAAGTTAGAT
228282 GAAAGGTTAA
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
79 8 0.12
80 19 0.30
81 4 0.06
83 3 0.05
84 5 0.08
85 25 0.39
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (79 bp):
GTTAAAGACGTTGAGTAAAAGATAAATACCTATGTATTTGGCAAAAAAATGTCAATCATGCAAGT
TAGATAGATGAACA
Found at i:231361 original size:8 final size:8
Alignment explanation
Indices: 231346--231386 Score: 64
Period size: 8 Copynumber: 5.1 Consensus size: 8
231336 ACCGCCCGGT
231346 TGAACCAG
1 TGAACCAG
*
231354 TAAACCAG
1 TGAACCAG
*
231362 TGAATCAG
1 TGAACCAG
231370 TGAACCAG
1 TGAACCAG
231378 TGAACCAG
1 TGAACCAG
231386 T
1 T
231387 ACCTCCACCG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (8 bp):
TGAACCAG
Found at i:232246 original size:20 final size:20
Alignment explanation
Indices: 232223--232265 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
232213 AACGCGATCC
232223 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
232243 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
232263 CCA
1 CCA
232266 ATCGCAACGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:232291 original size:21 final size:20
Alignment explanation
Indices: 232265--232359 Score: 66
Period size: 20 Copynumber: 4.7 Consensus size: 20
232255 ATCAGTTTCC
232265 AATCGCAACGCGATTCTTGAA
1 AATCGCAACGCGATT-TTGAA
* * **
232286 AATCGCGATGCGATAGT-ACA
1 AATCGCAACGCGATTTTGA-A
* ** *
232306 ATTCGCATTGCGATTTTCCAA
1 AATCGCAACGCGATTTT-GAA
* *
232327 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGATTTTGAA
232347 AATCGCAACGCGA
1 AATCGCAACGCGA
232360 ACACAAATCG
Statistics
Matches: 56, Mismatches: 15, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
19 1 0.02
20 29 0.52
21 25 0.45
22 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (20 bp):
AATCGCAACGCGATTTTGAA
Found at i:232389 original size:20 final size:20
Alignment explanation
Indices: 232326--232515 Score: 210
Period size: 20 Copynumber: 9.7 Consensus size: 20
232316 CGATTTTCCA
* ** *
232326 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
*
232346 AAATCGCAACGCG-AACAC--
1 AAATCGCAACGCGTATC-CGT
232364 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
232384 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
232404 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
232424 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
232444 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
232464 -AATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
232483 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
232503 AAATCGCAACGCG
1 AAATCGCAACGCG
232516 ATATTTAAAG
Statistics
Matches: 143, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
18 15 0.10
19 16 0.11
20 111 0.78
21 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:232537 original size:59 final size:58
Alignment explanation
Indices: 232364--232515 Score: 180
Period size: 59 Copynumber: 2.6 Consensus size: 58
232354 ACGCGAACAC
* * * ***
232364 AAATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGTAAATCGCAACGCGT-ATGGGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGTAT-CGT-AAGCGCAACG-ATAATACAT
* * *
232424 AAATCGCAATGCGTATCCGTATATCGCAACGCGTATCCGTAATCGCAACGATAATACAT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGTAT-CGTAAGCGCAACGATAATACAT
232483 AAATCGCAACGCGTATCCGTAAATCGCAACGCG
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCG
232516 ATATTTAAAG
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
58 1 0.01
59 44 0.54
60 37 0.45
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (58 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGCGTATCGTAAGCGCAACGATAATACAT
Found at i:232687 original size:21 final size:22
Alignment explanation
Indices: 232661--232714 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
232651 CTCTCTACGG
232661 CGAAGAAATCCGT-CCCATCTC
1 CGAAGAAATCCGTCCCCATCTC
**
232682 CGAAGATTTCCGTCCCCATCTC
1 CGAAGAAATCCGTCCCCATCTC
**
232704 CGGCGAAATCC
1 CGAAGAAATCC
232715 CTCACAACCA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.24, C:0.39, G:0.17, T:0.20
Consensus pattern (22 bp):
CGAAGAAATCCGTCCCCATCTC
Found at i:232932 original size:33 final size:33
Alignment explanation
Indices: 232893--232963 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
232883 TTCACTTAGA
232893 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
232926 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
232959 TTTCA
1 TTTCA
232964 AGTTAGTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.11, C:0.24, G:0.17, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:233103 original size:14 final size:14
Alignment explanation
Indices: 233084--233138 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
233074 AGAATGACTG
233084 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
*
233098 TCGCAACGCGAAATGGAAA
1 TCGCAA--CGAGA--G-AA
233117 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
233131 TCGCAACG
1 TCGCAACG
233139 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 16 0.47
15 1 0.03
16 4 0.12
17 4 0.12
18 1 0.03
19 8 0.24
ACGTcount: A:0.40, C:0.24, G:0.27, T:0.09
Consensus pattern (14 bp):
TCGCAACGAGAGAA
Found at i:233151 original size:33 final size:33
Alignment explanation
Indices: 233084--233154 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
233074 AGAATGACTG
***
233084 TCGCAACGAGAGAATCGCAACGCGAAATGGAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
233117 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
233150 TCGCA
1 TCGCA
233155 TTGCGATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.42, C:0.25, G:0.24, T:0.08
Consensus pattern (33 bp):
TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
Found at i:233172 original size:19 final size:19
Alignment explanation
Indices: 233150--233247 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
233140 GAAACCAAAA
*
233150 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
233169 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
233183 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
233202 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
233216 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
233235 TCGCGTTGCGATT
1 TCGCGTTGCGATT
233248 CTCCGTTGCG
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:233191 original size:14 final size:14
Alignment explanation
Indices: 233172--233260 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
233162 TTTCATTTCG
233172 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
233186 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
233205 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
233219 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
233236 CGCGTTGCGATTCTC-
1 --CGTTGCGATTCTCT
233251 CGTTGCGATT
1 CGTTGCGATT
233261 TTCATTTCAA
Statistics
Matches: 63, Mismatches: 2, Indels: 21
0.73 0.02 0.24
Matches are distributed among these distances:
13 10 0.16
14 18 0.29
15 1 0.02
16 7 0.11
17 8 0.13
18 1 0.02
19 18 0.29
ACGTcount: A:0.09, C:0.26, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:233197 original size:33 final size:33
Alignment explanation
Indices: 233155--233268 Score: 203
Period size: 33 Copynumber: 3.5 Consensus size: 33
233145 CAAAATCGCA
233155 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
233188 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
233221 TTGCGATTGTCATCTCGCGTTGCGATTCTC-CG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
233253 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
233269 AACCAAAAGA
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
32 16 0.21
33 61 0.79
ACGTcount: A:0.10, C:0.25, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:235131 original size:90 final size:93
Alignment explanation
Indices: 234942--235311 Score: 647
Period size: 90 Copynumber: 4.1 Consensus size: 93
234932 TAGATTGCTT
234942 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
235007 TTTG-CTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
235034 AGT--ATTTGTTCGGTTGCTGCCAATTCTGCT-AACTGTGT-TTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
235094 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
235122 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGGTG--A-AGT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACT-GTGAAATAGT
235184 ATTTGTCTTTGTTTTGTCTTTT-GTTGAA
65 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
235212 AGTAAATTTGTTCGG--GCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
235275 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
235303 AGTAAATTT
1 AGTAAATTT
235312 ATCCATTCAA
Statistics
Matches: 267, Mismatches: 0, Indels: 23
0.92 0.00 0.08
Matches are distributed among these distances:
87 9 0.03
88 83 0.31
89 9 0.03
90 101 0.38
91 47 0.18
92 15 0.06
93 3 0.01
ACGTcount: A:0.21, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:235395 original size:19 final size:19
Alignment explanation
Indices: 235355--235483 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
235345 TAGTTTACTT
* *
235355 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
235375 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
235394 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
235413 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
235427 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
235446 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
235460 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
235479 TCGCA
1 TCGCA
235484 TTGCGATTTC
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 46 0.51
20 13 0.14
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:235434 original size:33 final size:32
Alignment explanation
Indices: 235391--235483 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 32
235381 CGCGAAACCA
**
235391 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
235423 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
235456 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
235484 TTGCGATTTC
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.04
33 55 0.96
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:235481 original size:52 final size:52
Alignment explanation
Indices: 235355--235483 Score: 140
Period size: 52 Copynumber: 2.5 Consensus size: 52
235345 TAGTTTACTT
**
235355 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
* * *
235407 T-G-AAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-A
*
235460 TCGCAACGCGAAAC-CAAAATCGCA
1 TCGCAACACGAAACACAAAATCGCA
235484 TTGCGATTTC
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 42 0.68
53 3 0.05
54 6 0.10
55 2 0.03
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (52 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
Found at i:235519 original size:14 final size:14
Alignment explanation
Indices: 235500--235556 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
235490 TTTCATTTCG
235500 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
235514 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
235531 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
235547 CGTTGCGATT
1 CGTTGCGATT
235557 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:235531 original size:33 final size:33
Alignment explanation
Indices: 235484--235575 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
235474 CAAAATCGCA
*
235484 TTGCGA-TTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
235516 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
235549 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
235576 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 6 0.11
33 50 0.89
ACGTcount: A:0.11, C:0.21, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:235540 original size:19 final size:19
Alignment explanation
Indices: 235479--235612 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
235469 GAAACCAAAA
*
235479 TCGCATTGCGA-TTTCATT
1 TCGCGTTGCGATTTTCATT
235497 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
235513 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
235530 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
235546 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
235563 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
235582 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
235602 TCGTGTTGCGA
1 TCGCGTTGCGA
235613 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 20
0.76 0.08 0.16
Matches are distributed among these distances:
14 15 0.16
16 11 0.12
17 11 0.12
18 10 0.11
19 36 0.38
20 12 0.13
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Done.