genome.fa.s8629.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008629.1 Hibiscus syriacus cultivar Beakdansim tig00111598_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  200978

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5870--5902	16	2.1	16	94	0	57	33	27	6	33	1.81
10147--10193	19	2.4	19	79	10	51	27	12	8	51	1.69
10762--10827	20	3.1	21	80	10	64	28	18	16	36	1.93
10839--10907	20	3.5	20	75	20	72	27	13	26	33	1.93
11000--11050	26	2.0	26	92	0	84	31	25	5	37	1.80
16429--16496	20	3.4	20	70	8	66	22	17	27	32	1.96
16405--16496	40	2.3	40	86	0	121	21	18	27	32	1.97
39274--39360	31	2.8	31	92	0	129	36	22	19	20	1.95
44024--44155	63	2.1	63	84	2	167	25	19	18	36	1.95
56145--56251	41	2.7	39	82	2	124	24	24	23	28	2.00
56145--56258	39	2.8	41	84	2	142	23	24	23	28	2.00
60264--60289	12	2.2	12	100	0	52	15	19	7	57	1.62
60873--60906	2	17.0	2	100	0	68	50	0	0	50	1.00
61069--61120	13	4.0	13	84	0	59	36	17	19	26	1.94
61644--61752	55	2.0	55	98	0	209	36	19	14	29	1.91
72674--72712	20	2.0	20	84	0	51	58	2	2	35	1.25
72752--72795	18	2.3	19	80	15	54	52	0	0	47	1.00
72770--72813	23	2.0	23	86	8	65	52	0	0	47	1.00
72981--73035	27	2.1	26	83	16	69	52	0	0	47	1.00
72985--73044	18	3.2	18	71	17	50	58	0	0	41	0.98
73095--73134	11	3.6	11	83	10	55	57	0	0	42	0.98
73095--73144	21	2.3	21	86	10	66	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74322--74412	29	3.1	29	73	6	83	39	5	18	36	1.74
74320--74411	31	3.1	29	74	7	78	40	5	19	34	1.75
75944--75996	24	2.2	24	82	0	61	39	18	15	26	1.90
76709--76884	29	6.2	29	79	5	180	50	15	3	29	1.62
76706--76883	58	3.1	57	81	9	211	50	15	3	30	1.62
77503--77876	188	2.0	186	96	2	696	30	18	11	39	1.86
83315--83398	24	3.5	24	95	0	141	42	19	11	26	1.85
83315--83410	48	2.0	48	87	0	138	45	17	11	25	1.82
84037--84111	28	2.8	26	84	8	80	54	5	4	36	1.42
84063--84165	28	3.8	28	77	8	88	54	8	5	31	1.55
84096--84165	26	2.7	26	76	10	72	57	10	7	25	1.57
87807--87851	14	3.4	13	82	14	56	46	0	13	40	1.43
92623--92660	20	1.9	20	88	0	58	39	15	10	34	1.82
93209--93261	19	2.8	20	82	5	65	50	5	13	30	1.64
104913--104951	21	1.9	20	84	5	51	28	15	17	38	1.91
128869--128947	3	26.0	3	97	2	149	0	32	0	67	0.91
130413--130438	9	2.9	9	100	0	52	34	11	23	30	1.90
131185--131226	21	2.0	21	95	0	75	19	21	23	35	1.96
131341--131366	3	8.7	3	100	0	52	34	30	0	34	1.58
131365--131399	3	11.7	3	100	0	70	34	0	0	65	0.93
131507--131559	22	2.3	23	80	6	63	41	35	16	5	1.73
144250--144334	1	85.0	1	75	0	53	84	0	7	8	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144243--144324	16	5.0	16	83	15	105	84	0	8	7	0.79
144243--144334	29	3.0	29	74	20	87	83	0	7	8	0.80
145586--145956	135	2.7	135	86	4	482	32	22	14	29	1.94
146182--146206	3	8.3	3	100	0	50	32	0	0	68	0.90
148599--148627	2	14.5	2	100	0	58	48	0	0	51	1.00
149693--149820	31	4.2	31	95	2	224	39	2	14	43	1.58
150717--150764	22	2.3	20	75	10	51	33	8	12	45	1.72
151096--151168	23	3.2	23	88	0	110	39	20	4	35	1.72
150673--152329	469	3.5	471	91	4	2599	40	10	7	41	1.67
151582--151644	23	2.7	23	90	0	90	38	19	4	38	1.73
153735--154116	191	2.0	190	96	3	714	31	19	22	25	1.98
154864--155444	297	2.0	296	92	3	972	34	16	14	34	1.89
155141--156229	180	6.0	183	91	4	1752	33	16	14	35	1.89
156178--156279	50	2.0	51	98	1	197	24	21	9	44	1.82
157505--157563	3	19.7	3	78	0	55	22	32	6	38	1.80
157506--157558	15	3.7	15	80	14	67	20	33	7	37	1.81
158997--159760	200	3.8	200	93	1	1271	31	18	14	36	1.91
159982--160042	19	3.3	18	88	2	59	52	11	1	34	1.47
159994--160042	19	2.6	19	96	0	89	55	10	2	32	1.45
161833--161898	33	2.0	33	90	0	105	22	48	0	28	1.51
161932--161996	21	3.1	21	93	0	103	16	30	10	41	1.83
163457--163503	20	2.4	19	79	10	58	19	17	10	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163304--163715	181	2.3	181	87	2	583	26	16	13	42	1.86
164637--164714	31	2.5	30	81	6	93	34	11	15	38	1.83
166414--166459	20	2.3	20	100	0	92	39	4	13	43	1.63
168228--168267	20	2.0	21	85	5	55	27	17	20	35	1.95
171424--171650	119	1.9	121	86	5	327	46	13	16	23	1.82
172827--173135	97	3.2	97	87	3	415	26	22	14	35	1.93
172824--173135	49	6.4	47	80	7	308	26	22	14	36	1.93
178740--179081	49	7.0	48	80	4	319	27	23	14	34	1.94
178740--179081	98	3.5	98	80	2	384	27	23	14	34	1.94
179491--179524	17	2.1	16	89	10	52	41	17	0	41	1.50
181152--181716	138	4.1	138	82	3	618	26	15	27	30	1.96
181736--181810	36	2.1	34	87	9	105	38	14	17	29	1.89
181774--181972	65	3.0	65	85	2	245	41	14	17	27	1.88
182268--182387	36	3.4	35	72	7	107	40	15	14	30	1.86
183893--184028	45	3.0	44	80	3	146	34	18	13	33	1.90
184983--185034	14	3.5	15	78	21	65	0	23	5	71	1.07
184985--185054	7	9.9	7	70	14	54	0	24	4	71	1.04
185010--185056	20	2.3	20	85	10	60	0	23	2	74	0.93
184975--185044	28	2.6	26	80	14	88	0	22	4	72	1.01
187566--187592	12	2.2	12	100	0	54	62	14	7	14	1.51
188890--188948	16	3.7	16	82	8	66	38	6	22	32	1.80
197167--197208	17	2.4	18	92	4	68	21	7	0	71	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197249--197304	15	3.7	16	79	11	64	25	3	0	71	1.02
197249--197302	20	2.8	20	75	10	60	24	3	0	72	1.01

Tables:   1

The End!