genome.fa.s8630.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008630.1 Hibiscus syriacus cultivar Beakdansim tig00111599_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  385647

Tables:   1   

This is table  1  of  1  ( 105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14826--14879	24	2.3	23	81	15	65	79	1	16	1	0.91
14826--14879	6	9.0	6	76	15	58	79	1	16	1	0.91
23143--23228	13	7.2	12	72	22	58	29	3	37	30	1.74
23125--23229	36	2.9	36	95	1	185	28	4	36	30	1.78
27091--27158	35	1.9	36	87	3	102	30	2	33	32	1.73
32444--32475	13	2.5	13	95	5	57	68	0	15	15	1.21
33017--33067	19	2.6	20	87	3	68	45	5	13	35	1.68
37642--37925	139	2.0	142	88	8	423	31	16	24	27	1.96
41341--41395	23	2.3	25	84	6	78	60	12	18	9	1.58
47105--47159	23	2.3	25	81	6	69	61	10	18	9	1.54
52093--52161	7	10.7	7	79	20	64	1	13	8	76	1.07
52086--52161	32	2.4	31	89	8	118	1	14	7	76	1.07
52088--52160	6	11.7	6	80	8	83	1	13	6	78	1.02
52088--52163	25	3.0	24	85	9	98	1	13	7	77	1.04
52343--52371	13	2.3	13	94	5	51	68	0	17	13	1.20
56138--56180	18	2.4	18	100	0	86	37	27	9	25	1.87
60987--61033	10	4.4	11	78	10	53	2	6	8	82	0.90
62496--62549	16	3.1	17	81	10	65	14	18	0	66	1.25
69893--69940	19	2.5	19	77	16	53	4	16	4	75	1.12
69866--69939	35	2.2	33	83	13	96	5	16	4	74	1.16
74907--74972	6	10.7	6	83	6	87	0	15	4	80	0.87
74908--74975	25	2.7	25	97	0	127	0	14	5	79	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74905--74972	19	3.7	18	79	14	77	0	16	4	79	0.89
75155--75183	13	2.3	13	94	5	51	68	0	17	13	1.20
81985--82021	14	2.6	14	86	4	56	0	10	10	78	0.97
90459--90497	15	2.6	15	75	0	51	5	15	0	79	0.90
90542--90616	6	11.7	7	81	18	53	0	16	8	76	1.02
90538--90614	31	2.5	31	89	6	111	0	16	6	76	0.98
90535--90614	38	2.2	38	95	4	146	0	17	6	76	0.99
91370--91460	19	4.6	20	85	6	114	43	5	10	39	1.63
91370--91445	21	3.8	20	89	6	127	42	5	9	43	1.59
91370--91460	40	2.3	39	90	1	137	43	5	10	39	1.63
102768--102807	19	2.0	20	90	4	64	20	15	0	65	1.28
105716--105784	33	2.1	33	83	5	86	31	1	36	30	1.67
114263--114331	33	2.1	33	83	5	86	30	36	1	31	1.67
115555--115655	36	2.8	36	92	1	159	32	33	3	29	1.76
116037--116079	17	2.5	17	82	17	54	79	6	13	0	0.93
121270--121354	11	7.2	11	72	22	66	31	36	3	28	1.74
121268--121371	36	2.9	36	95	1	183	30	36	3	28	1.75
123006--123030	13	1.9	13	100	0	50	28	40	0	32	1.57
128176--128228	20	2.6	21	82	8	65	73	13	13	0	1.10
128173--128202	11	2.6	12	89	10	53	80	6	13	0	0.91
135126--135163	10	3.8	10	83	10	51	89	5	2	2	0.64
135124--135170	21	2.2	21	88	7	69	82	10	4	2	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139981--140027	14	3.1	15	75	12	51	72	6	19	2	1.17
145561--145629	33	2.1	33	83	5	86	31	1	36	30	1.67
151248--151316	33	2.1	33	83	5	86	31	1	36	30	1.67
159054--159091	16	2.2	18	86	9	53	2	10	2	84	0.83
159271--159322	26	1.9	28	85	14	74	57	0	26	15	1.38
181105--182429	664	2.0	659	95	3	2391	28	20	15	35	1.93
186273--186379	53	2.0	53	98	0	205	24	21	17	36	1.95
194388--194433	18	2.5	19	82	13	60	34	15	6	43	1.72
198424--198466	20	2.2	20	87	4	61	41	4	13	39	1.66
199339--199393	27	2.0	27	85	0	74	58	9	5	27	1.51
199743--199812	18	3.6	19	80	16	81	2	18	4	74	1.11
199762--199808	12	4.2	11	81	10	51	0	21	2	76	0.89
205178--205228	19	2.6	20	90	3	77	43	5	15	35	1.71
213699--213783	43	2.0	43	100	0	170	27	18	25	28	1.98
218503--218546	18	2.5	18	89	10	65	36	6	13	43	1.71
220050--220088	19	2.0	20	95	5	71	82	0	12	5	0.83
223764--223793	13	2.3	13	94	0	51	90	6	3	0	0.56
223775--223851	25	3.0	25	77	17	86	77	9	10	2	1.07
223788--223832	14	3.4	14	70	17	51	82	4	8	4	0.94
223805--223844	17	2.4	17	87	8	55	80	7	10	2	1.00
228123--228162	15	2.6	16	84	8	55	15	10	5	70	1.32
229280--229359	35	2.2	37	91	4	128	31	37	3	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230185--230235	19	2.6	20	90	3	77	43	5	15	35	1.71
231144--231203	30	2.0	31	83	3	77	55	10	8	26	1.61
235560--235621	22	2.9	22	79	11	74	12	22	37	27	1.91
243432--243486	14	3.9	14	75	17	51	80	1	18	0	0.81
243434--243491	19	3.1	18	76	16	64	79	1	18	0	0.82
243432--243488	11	5.5	10	79	20	55	80	1	17	0	0.79
243436--243491	10	5.8	10	76	23	50	78	1	19	0	0.84
249800--249851	5	9.8	5	80	15	52	1	21	1	75	1.00
249796--249851	8	6.8	8	78	13	60	1	21	1	75	0.99
249796--249836	13	3.2	13	83	16	59	0	21	0	78	0.76
249796--249829	18	1.9	17	94	5	59	0	20	0	79	0.73
250572--250622	19	2.6	20	90	3	77	43	5	15	35	1.71
251532--251591	30	2.0	31	83	3	77	55	10	8	26	1.61
253723--253769	26	1.9	23	87	12	67	76	8	14	0	1.01
253726--253768	17	2.3	20	80	15	56	76	6	16	0	0.99
258167--258234	18	3.9	16	81	11	73	38	10	11	39	1.76
258167--258234	17	3.9	18	81	11	70	38	10	11	39	1.76
260088--260151	2	32.5	2	96	3	121	50	0	0	50	1.00
263013--263068	5	10.6	5	80	14	51	1	16	1	80	0.88
263020--263068	17	2.9	18	80	17	52	2	16	2	79	0.92
263391--263429	20	1.9	21	84	5	53	33	0	38	28	1.57
265325--265351	10	2.7	10	100	0	54	92	7	0	0	0.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273514--273580	29	2.3	29	92	0	107	19	5	13	61	1.52
280401--280437	19	1.9	19	89	10	58	0	21	2	75	0.92
280391--280441	23	2.2	23	82	6	59	0	21	1	76	0.88
285317--285374	13	4.7	12	76	23	50	0	20	1	77	0.86
290234--290292	13	4.8	12	77	22	52	0	20	1	77	0.85
290233--290292	32	1.9	31	83	16	79	0	21	1	76	0.87
290237--290293	19	3.0	19	74	23	57	0	19	3	77	0.92
290239--290292	10	5.2	10	77	4	54	0	18	1	79	0.82
294471--294519	4	12.8	4	79	12	50	2	18	0	79	0.83
294469--294519	13	4.0	13	85	9	70	1	19	0	78	0.85
294508--294559	24	2.1	25	89	3	79	11	11	15	61	1.57
299007--299055	14	3.6	14	75	8	57	2	20	2	75	1.00
311089--311160	34	2.2	32	83	11	85	8	15	4	72	1.24
323575--324132	275	2.0	275	95	0	990	32	23	14	29	1.94
326460--326529	34	2.1	34	100	0	140	22	22	20	34	1.97
366915--366944	13	2.4	13	94	5	53	26	30	0	43	1.55
384732--384802	17	4.2	16	75	15	63	39	12	9	38	1.77

Tables:   1

The End!