Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008631.1 Hibiscus syriacus cultivar Beakdansim tig00111600_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  181520

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19936--19965
13
2.4
13
94
5
53
26
30
0
43
1.55
36869--36901
14
2.4
14
90
10
50
0
21
0
78
0.75
38525--38576
19
2.6
21
90
6
81
46
7
13
32
1.72
47731--47762
10
3.0
11
90
9
57
0
15
0
84
0.63
47718--47781
16
3.5
20
71
28
61
6
14
3
76
1.10
47737--47797
28
2.3
25
72
8
59
3
16
3
77
1.04
48503--48554
19
2.6
21
90
6
81
46
7
13
32
1.72
60067--60125
30
2.0
29
84
15
77
8
15
3
72
1.21
60066--60136
30
2.3
30
77
15
74
7
16
4
71
1.24
61747--61788
2
21.5
2
95
4
77
50
0
0
50
1.00
64696--64753
8
7.4
8
81
11
57
0
18
1
79
0.82
64699--64753
11
4.7
11
76
10
56
0
20
1
78
0.85
64696--64750
19
2.9
18
84
10
74
0
20
1
78
0.85
64710--64754
16
2.8
16
90
10
65
0
20
4
75
0.97
65021--65060
19
2.0
20
86
13
57
67
0
10
22
1.20
66360--66397
2
19.5
2
94
5
69
50
0
0
50
1.00
83013--83042
13
2.4
13
94
5
53
26
30
0
43
1.55
90769--90797
13
2.3
13
94
5
51
48
0
31
20
1.50
95188--95240
24
2.2
24
100
0
106
35
22
15
26
1.93
95952--96002
19
2.6
19
87
3
75
47
3
13
35
1.62
95952--95994
20
2.2
20
91
4
70
48
2
11
37
1.52
105525--105576
19
2.6
20
90
6
79
44
5
13
36
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108455--108484
13
2.4
13
94
5
53
26
30
0
43
1.55
110901--110962
7
8.0
7
74
25
54
82
11
6
0
0.84
110902--110963
8
7.8
8
79
13
74
83
9
6
0
0.79
110901--110963
15
4.0
15
78
17
74
82
11
6
0
0.83
110901--110974
33
2.2
32
86
9
96
79
12
8
0
0.92
110937--110974
20
1.9
20
88
0
58
78
10
10
0
0.95
117770--117820
20
2.6
20
90
3
77
35
15
5
43
1.71
121950--121995
20
2.3
20
85
3
58
36
15
8
39
1.78
125829--125858
13
2.4
13
94
5
53
26
30
0
43
1.55
131038--131101
25
2.4
26
82
7
67
65
0
17
17
1.27
131061--131101
15
3.0
14
76
16
50
65
0
17
17
1.27
132307--132336
15
1.9
16
93
6
53
56
0
26
16
1.40
140455--140494
15
2.9
15
85
14
59
65
0
17
17
1.28
141038--141074
19
1.9
19
89
10
58
45
5
10
37
1.62
142659--142699
21
2.0
21
86
9
59
46
4
9
39
1.58
143726--143777
15
3.6
15
82
12
56
63
0
23
13
1.29
144295--144346
19
2.6
21
87
6
72
44
7
13
34
1.72
144927--144981
24
2.2
25
83
3
67
58
0
16
25
1.38
144958--144997
19
2.0
20
90
4
64
62
0
17
20
1.33
150703--150787
11
7.2
11
72
22
66
31
36
3
28
1.74
150700--150804
36
2.9
36
95
1
185
30
36
4
28
1.78
152648--152707
22
3.2
18
78
19
68
1
16
3
78
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
152644--152708
18
3.5
19
80
15
57
1
18
4
75
1.05
155293--155338
23
2.0
23
83
8
58
36
6
8
47
1.60
156953--156997
8
5.5
8
87
12
65
77
2
20
0
0.87
156952--157011
25
2.3
27
80
13
81
80
1
18
0
0.80
156952--157010
16
3.5
17
84
11
68
79
1
18
0
0.81
156952--157013
8
7.4
8
82
7
61
80
1
17
0
0.79
156952--157013
17
3.7
16
74
18
54
80
1
17
0
0.79
156952--157015
26
2.5
26
77
22
73
79
1
18
0
0.81
164861--164906
23
2.0
23
83
8
58
36
6
8
47
1.60
172037--172080
15
3.1
15
87
9
65
63
2
20
13
1.40
172048--172093
20
2.3
20
85
10
60
60
0
23
15
1.34
172840--172890
19
2.6
20
90
3
77
43
5
15
35
1.71
174868--174896
15
2.0
15
93
6
51
75
3
20
0
0.94
180738--180780
20
2.2
20
87
4
61
34
9
6
48
1.62
181351--181400
16
3.1
16
72
16
50
20
18
0
62
1.34

Tables:   1

The End!