genome.fa.s8632.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008632.1 Hibiscus syriacus cultivar Beakdansim tig00111602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74520

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4203--4244	15	2.8	16	82	13	54	35	0	2	61	1.09
9572--9610	15	2.5	15	83	4	51	46	5	2	46	1.38
16844--17063	114	1.9	114	88	1	334	36	16	25	20	1.94
19598--19628	16	1.9	16	93	0	53	41	6	16	35	1.74
19629--19671	15	2.8	15	92	3	68	55	0	2	41	1.12
20838--20869	2	15.5	2	93	6	55	46	3	0	50	1.17
21503--21538	15	2.4	15	90	0	54	41	2	0	55	1.14
22406--22829	221	1.9	221	85	5	581	39	5	6	48	1.52
27525--27609	44	1.9	45	90	2	136	30	10	17	41	1.83
27830--27930	29	3.4	29	86	2	130	33	3	23	38	1.74
28938--29005	14	5.2	13	77	7	57	39	30	1	27	1.66
29786--29854	3	23.7	3	80	16	83	36	0	0	63	0.94
29785--29836	16	3.1	16	89	10	70	38	0	0	61	0.96
29787--29851	13	5.0	13	82	14	64	36	0	0	63	0.95
29793--29859	16	4.1	17	84	11	79	34	0	0	65	0.93
30911--30942	13	2.5	13	95	5	57	31	0	0	68	0.90
30911--30942	6	5.2	6	92	7	55	31	0	0	68	0.90
34827--35909	106	10.3	106	90	3	1609	33	25	18	23	1.96
35578--35878	94	3.1	95	84	10	417	34	25	17	22	1.96
35983--36250	80	3.3	80	75	6	277	29	25	21	23	1.99
35983--36247	83	3.3	82	76	6	288	29	25	21	23	1.99
36862--36909	3	16.3	3	83	12	64	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36867--36912	16	2.8	16	86	3	65	30	0	0	69	0.89
37963--37994	13	2.5	13	95	5	57	31	0	0	68	0.90
37963--37994	6	5.2	6	92	7	55	31	0	0	68	0.90
42917--42950	16	2.1	16	94	0	59	32	26	8	32	1.87
52356--52398	21	2.0	21	86	0	59	32	25	23	18	1.97
52426--52463	20	1.9	20	88	0	58	23	34	31	10	1.89
52941--53261	103	3.1	103	95	0	579	26	12	23	37	1.91
53277--53363	23	3.8	23	92	0	138	19	27	26	26	1.99
59026--59247	110	2.0	110	100	0	444	45	5	21	27	1.73
59587--59624	20	1.9	20	88	0	58	23	34	31	10	1.89
60106--60425	103	3.1	103	96	0	597	25	13	24	36	1.92
60442--60493	23	2.3	23	89	0	77	21	30	25	23	1.99
60441--60504	23	2.8	23	76	4	67	21	26	23	28	1.99
64375--64421	23	2.0	23	95	0	85	40	10	4	44	1.59
64897--65033	72	1.9	72	81	4	166	39	10	13	36	1.79
64950--65131	98	1.9	95	86	5	258	39	12	14	34	1.84
65068--65206	75	1.9	75	92	0	233	41	9	15	33	1.79
65106--65303	97	2.0	97	85	2	263	40	12	12	35	1.80
64875--65449	172	3.4	173	84	3	682	40	11	12	35	1.79
65204--65377	74	2.4	74	81	0	204	41	12	10	35	1.77
65352--65400	23	2.1	23	88	0	71	38	18	12	30	1.87
68703--68787	33	2.5	34	84	7	120	12	11	35	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68741--68817	40	2.0	40	94	2	138	12	10	36	40	1.78
68782--68844	28	2.2	28	83	5	74	14	9	31	44	1.77
69032--69057	5	5.2	5	100	0	52	0	19	57	23	1.40
69445--69478	17	2.0	17	88	0	50	23	29	5	41	1.78

Tables:   1

The End!