Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008636.1 Hibiscus syriacus cultivar Beakdansim tig00111609_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90336

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3820--4349
175
3.0
177
97
1
1003
41
19
17
22
1.91
7339--7383
2
22.5
2
100
0
90
48
0
0
51
1.00
12387--12427
19
2.2
19
100
0
82
53
4
14
26
1.61
13700--13741
22
2.0
21
85
4
57
47
2
0
50
1.14
19982--20019
11
3.5
11
83
16
53
39
0
0
60
0.97
20089--20121
7
4.7
7
96
0
57
48
0
0
51
1.00
21403--21589
65
2.9
65
83
3
225
30
18
14
35
1.92
23108--23175
6
11.3
6
98
0
127
35
14
33
16
1.89
27387--27488
44
2.3
44
93
0
168
30
20
18
30
1.97
27402--27472
23
3.2
23
64
22
60
29
19
21
29
1.98
27976--28010
12
2.8
12
91
4
52
37
8
5
48
1.58
29450--29493
20
2.2
20
84
8
54
18
2
20
59
1.49
30097--30285
65
2.9
65
88
1
236
30
20
16
32
1.94
32393--32434
22
1.9
22
95
0
75
11
19
40
28
1.87
35052--35132
21
3.8
22
76
9
69
16
23
34
25
1.95
35053--35134
20
3.9
21
78
10
69
15
24
32
26
1.95
38917--38956
21
1.9
21
85
10
55
35
10
2
52
1.48
42693--42761
18
3.5
18
73
24
59
39
18
21
20
1.93
44374--44483
57
1.9
57
87
7
161
39
2
19
39
1.66
44559--44635
23
3.5
22
81
15
95
18
15
29
36
1.92
44636--44684
24
2.0
24
84
0
62
28
22
20
28
1.98
45758--45827
31
2.3
31
84
0
86
31
7
14
47
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48216--48271
18
3.3
18
68
27
59
66
5
0
28
1.14
48748--48789
21
1.9
22
85
9
59
52
4
0
42
1.22
50136--50240
21
5.1
21
63
4
61
20
19
23
36
1.95
50140--50240
41
2.5
41
91
0
157
21
19
22
35
1.96
50229--50281
22
2.4
22
87
0
79
18
13
26
41
1.87
50374--50413
19
2.1
19
100
0
80
32
37
15
15
1.88
50910--50946
6
6.2
6
100
0
74
0
16
48
35
1.46
51046--51098
22
2.4
22
93
0
97
37
28
16
16
1.91
59785--59845
27
2.3
27
97
0
113
44
13
13
29
1.81
63664--63724
27
2.3
27
97
0
113
44
13
13
29
1.81
64347--64374
13
2.2
13
100
0
56
32
21
14
32
1.93
65309--65352
2
22.0
2
100
0
88
50
0
0
50
1.00
69731--69824
29
3.2
28
75
11
89
35
18
3
43
1.66
70020--70206
60
3.1
59
83
7
184
40
4
23
32
1.74
70046--70132
29
2.9
30
69
10
79
43
5
19
31
1.74
72527--72582
27
2.1
27
100
0
112
21
10
32
35
1.88
75871--75925
9
5.9
9
82
4
65
74
3
3
18
1.11
78058--79008
106
9.0
106
92
1
1434
23
18
24
33
1.97
90152--90189
20
1.9
20
84
10
51
65
2
7
23
1.32
90202--90226
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!