genome.fa.s8637.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008637.1 Hibiscus syriacus cultivar Beakdansim tig00111610_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80779

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15126--15150	11	2.3	11	100	0	50	16	52	16	16	1.76
18443--18474	15	2.1	16	94	5	57	6	25	18	50	1.70
19225--19257	16	2.1	16	94	0	57	33	27	6	33	1.81
26122--26310	65	2.9	65	93	1	319	34	21	5	38	1.76
26524--26600	36	2.1	36	90	0	118	35	10	32	22	1.88
28128--28176	23	2.1	23	85	7	64	53	0	0	46	1.00
30514--30555	22	1.9	22	85	9	59	45	4	4	45	1.45
34491--34548	23	2.6	23	94	5	102	39	3	12	44	1.58
34566--34594	13	2.1	14	93	6	51	58	0	0	41	0.98
37587--37627	8	5.2	8	82	5	57	34	0	29	36	1.58
37695--38425	126	5.8	126	99	0	1408	22	25	19	31	1.98
38812--38911	33	3.0	34	83	2	139	39	3	4	54	1.35
39437--39542	21	5.0	21	91	5	160	21	21	36	19	1.95
39437--39569	63	2.1	63	80	8	146	22	20	36	20	1.95
39549--39596	21	2.3	21	85	0	60	22	12	39	25	1.89
41316--41423	34	3.2	33	80	6	110	61	3	0	35	1.14
41355--41421	33	2.1	32	85	2	89	62	5	0	31	1.19
46238--46264	2	13.5	2	100	0	54	0	48	0	51	1.00
47892--47926	13	2.8	13	91	4	54	57	0	0	42	0.99
48508--49090	128	4.6	128	97	0	1107	22	24	19	33	1.97
49478--49577	33	3.0	34	83	2	139	39	3	4	54	1.35
50003--50084	21	3.9	21	90	3	112	21	23	37	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49997--50090	21	4.5	21	86	5	111	21	25	36	17	1.94
50094--50141	21	2.3	21	85	0	60	22	12	39	25	1.89
51864--51941	33	2.4	32	83	10	97	60	1	0	38	1.05
51925--51971	16	2.8	18	78	15	64	65	4	0	29	1.11
51899--51971	33	2.2	34	85	9	98	64	4	0	31	1.12
53959--54005	21	2.2	21	96	0	85	61	0	0	38	0.96
56071--56105	18	1.9	19	88	11	56	45	2	0	51	1.16
56947--57015	19	3.6	19	80	7	70	31	5	8	53	1.55
56969--57027	17	3.3	17	81	9	64	27	3	8	61	1.41
56969--57027	19	3.3	17	81	13	57	27	3	8	61	1.41
57026--57058	17	1.9	17	93	0	57	18	3	12	66	1.36
57564--57625	29	2.1	30	82	8	74	43	4	17	33	1.71
68702--68753	15	3.6	14	82	12	70	30	1	0	67	1.02
68839--68908	33	2.1	33	81	7	79	25	0	8	65	1.21
73347--73677	75	4.4	75	82	4	375	42	13	11	32	1.81
73347--73670	148	2.2	150	82	4	395	42	13	11	31	1.81
73652--73723	23	3.1	23	81	0	90	37	13	15	33	1.87
73766--74040	153	1.8	151	87	4	410	42	10	7	38	1.69
74243--74925	225	3.0	224	82	4	743	33	12	13	40	1.82
79123--79177	13	4.2	13	92	2	92	40	0	9	50	1.34

Tables:   1

The End!