genome.fa.s8638.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008638.1 Hibiscus syriacus cultivar Beakdansim tig00111612_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80355

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7180--7228	13	3.8	13	97	0	89	14	40	10	34	1.79
7917--7950	16	2.1	16	88	5	50	47	0	5	47	1.26
11462--11503	21	2.0	21	100	0	84	23	19	28	28	1.98
15247--15293	23	2.0	23	100	0	94	29	21	40	8	1.83
27429--27470	23	2.0	20	82	17	50	38	2	4	54	1.34
28260--28292	17	1.9	17	100	0	66	27	12	18	42	1.85
29850--29895	2	23.5	2	95	4	85	47	0	0	52	1.00
33013--33055	18	2.4	18	92	3	70	58	11	13	16	1.64
36145--36233	21	4.3	20	78	4	97	40	17	22	19	1.91
36142--36233	41	2.2	41	96	0	166	41	17	21	19	1.90
36164--36298	41	3.3	41	79	6	114	38	20	20	20	1.94
36268--36320	20	2.7	20	93	0	88	28	28	18	24	1.98
36507--36550	22	2.0	22	95	0	79	20	45	15	18	1.85
36809--36846	20	1.9	20	88	0	58	13	15	21	50	1.78
38162--38206	18	2.5	18	77	0	54	28	42	13	15	1.85
38580--38624	17	2.6	17	86	6	56	4	2	22	71	1.15
38678--38728	20	2.6	19	81	6	59	37	23	23	15	1.93
38678--38741	18	3.4	19	79	8	69	37	23	23	15	1.93
38687--38741	20	2.8	20	81	5	69	38	21	23	16	1.93
38715--38804	32	2.8	32	96	1	162	46	23	18	11	1.81
38695--38809	14	6.6	19	69	23	74	42	23	21	12	1.86
38821--38909	14	5.8	14	75	19	88	8	17	25	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38816--38965	32	4.5	32	87	9	212	11	20	24	44	1.83
38816--38964	18	8.9	18	73	17	126	11	20	24	44	1.84
38835--38965	50	2.6	51	73	19	130	12	20	23	43	1.85
40959--41012	14	3.5	14	77	22	63	48	20	20	11	1.80
40940--41017	33	2.4	33	91	0	120	42	21	23	12	1.87
41439--41473	14	2.6	14	90	4	54	31	0	22	45	1.53
42937--42961	12	2.1	12	100	0	50	72	0	28	0	0.86
45235--45327	33	2.8	33	96	1	170	43	18	24	13	1.87
45331--45402	19	4.1	18	73	20	71	13	20	19	45	1.84
45509--45545	14	2.6	14	86	0	56	45	24	2	27	1.66
49008--49106	33	3.0	33	89	1	144	39	26	23	11	1.88
48983--49167	19	10.1	19	74	14	156	43	22	21	12	1.86
48983--49167	33	5.1	38	79	10	129	43	22	21	12	1.86
49163--49207	19	2.4	19	92	0	72	8	15	26	48	1.74
49756--49849	20	4.7	20	77	2	80	23	17	24	35	1.95
49838--49933	41	2.3	41	98	0	147	18	23	17	39	1.92
49838--49930	20	4.6	20	78	4	96	18	24	18	38	1.92
53896--53999	28	3.6	28	78	14	77	46	10	2	40	1.53
53896--54001	31	3.6	30	82	8	103	45	10	2	41	1.53
54083--54173	30	3.0	29	80	7	92	43	7	7	40	1.62
54348--54374	11	2.5	11	100	0	54	55	11	0	33	1.35
56238--56298	16	3.8	16	79	12	63	55	16	9	18	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56255--56304	16	3.1	16	78	18	59	58	18	6	18	1.59
63746--63788	2	21.5	2	100	0	86	51	0	0	48	1.00
66900--66962	29	2.1	30	85	5	83	39	6	19	34	1.77
71696--71837	59	2.4	59	84	4	178	32	19	18	30	1.95
74453--74511	31	1.9	30	86	3	82	18	13	15	52	1.74
74774--74816	13	3.2	12	84	15	50	53	2	0	44	1.13
77392--77425	2	17.5	2	93	6	61	50	0	0	50	1.00
78123--78160	19	2.0	19	100	0	76	26	42	15	15	1.87

Tables:   1

The End!