genome.fa.s864.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000864.1 Hibiscus syriacus cultivar Beakdansim tig00001670_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191231

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3789--3868	39	2.3	31	71	28	88	25	22	10	42	1.84
3798--3876	39	2.0	39	100	0	158	25	22	10	41	1.85
4527--4637	29	3.7	29	73	11	98	53	4	17	25	1.62
4525--4642	61	1.9	62	96	1	220	51	4	19	24	1.64
4718--4786	3	23.7	3	83	5	79	28	0	5	65	1.16
4718--4785	26	2.6	26	85	0	100	27	0	5	66	1.15
11201--11268	35	1.9	35	100	0	136	35	27	8	27	1.87
12892--12958	23	2.9	22	78	14	73	64	10	2	22	1.39
16575--16643	18	3.7	18	79	7	75	18	17	31	31	1.94
16572--16648	38	2.0	38	90	5	120	23	18	28	29	1.97
22755--22914	62	2.5	62	82	7	164	31	19	20	28	1.97
22778--22914	62	2.2	63	84	7	172	33	20	18	27	1.96
23487--23559	18	3.9	18	84	7	101	20	20	31	27	1.97
23802--23828	2	13.5	2	100	0	54	48	0	0	51	1.00
25771--25851	40	2.2	36	79	16	87	32	7	4	55	1.49
26115--26166	23	2.2	24	82	3	61	42	13	7	36	1.73
31320--31352	3	11.0	3	100	0	66	0	33	0	66	0.92
32533--32621	46	1.9	46	86	0	124	35	15	20	28	1.93
34304--34343	18	2.2	19	86	4	55	47	0	2	50	1.14
34573--34698	60	2.1	59	88	4	182	31	4	11	52	1.58
36754--36812	29	2.0	29	100	0	118	49	13	13	23	1.78
48260--48317	16	3.6	16	77	9	55	39	20	22	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59118--59149	16	2.0	16	100	0	64	37	18	0	43	1.51
64341--64480	21	6.7	21	81	9	162	30	25	21	23	1.99
64361--64477	41	2.8	40	82	8	137	31	23	22	23	1.98
65274--65377	21	4.9	21	74	9	59	32	23	22	22	1.98
65289--65377	21	4.3	20	75	16	74	31	25	21	21	1.98
65286--65363	41	1.9	41	84	5	104	34	23	21	20	1.97
65392--65445	21	2.6	21	93	0	90	18	22	29	29	1.97
74379--74538	59	2.7	59	84	5	189	41	6	20	31	1.77
75086--75127	22	1.9	22	95	0	75	28	9	9	52	1.65
79338--79466	24	5.4	23	81	10	89	43	19	12	24	1.85
79355--79470	24	4.8	24	85	7	155	40	18	14	25	1.89
81925--81966	18	2.3	18	95	0	75	11	21	47	19	1.81
90134--90256	61	2.0	61	98	0	237	35	13	8	42	1.75
95347--95420	16	4.4	17	74	8	62	35	1	0	63	1.03
97312--97376	3	22.0	3	96	3	123	33	0	0	66	0.92
97465--97489	5	5.0	5	100	0	50	0	20	40	40	1.52
98637--98696	22	2.7	23	80	12	63	55	0	3	41	1.16
98826--98877	21	2.5	21	93	0	86	9	7	7	75	1.21
106784--107081	163	1.8	163	90	2	483	39	9	9	41	1.70
107696--107781	29	3.0	29	94	0	145	16	34	27	20	1.94
107870--107954	33	2.6	33	86	3	109	9	38	25	25	1.86
107882--107994	10	10.3	10	68	14	55	10	36	29	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107936--107968	14	2.4	14	94	0	57	6	30	39	24	1.79
107955--107992	20	1.9	20	100	0	76	10	28	36	23	1.88
108031--108088	29	2.0	29	89	0	89	22	27	36	13	1.92
116560--116636	31	2.5	31	84	0	91	22	18	7	51	1.71
120529--120563	2	17.5	2	100	0	70	51	0	48	0	1.00
120762--120807	24	1.9	25	82	8	60	52	2	0	45	1.13
120986--121049	27	2.3	26	80	17	67	48	0	3	48	1.17
120984--121050	25	2.6	25	76	23	75	49	0	2	47	1.16
120994--121044	19	2.7	19	72	6	50	54	0	3	41	1.19
121654--121772	45	2.6	45	85	2	157	36	15	8	40	1.77
122398--122438	15	2.7	16	81	11	50	48	29	0	21	1.50
126707--126766	30	2.0	30	96	0	111	13	18	30	38	1.89
130446--130581	68	2.0	68	92	0	227	50	8	5	36	1.56
131824--131869	21	2.2	21	88	3	67	26	0	0	73	0.83
133105--133698	257	2.4	240	79	14	662	42	17	11	28	1.84
139622--139657	17	2.1	17	89	0	54	38	2	0	58	1.13
140016--140241	120	1.9	120	93	3	393	51	5	2	40	1.38
140224--140264	22	1.9	22	90	5	66	65	4	0	29	1.13
141393--141456	36	1.9	33	81	15	78	20	20	31	28	1.97
147403--147439	18	2.1	18	100	0	74	32	35	5	27	1.79
164079--164435	173	2.1	172	97	1	678	36	12	10	40	1.78
187429--187615	2	99.0	2	73	11	126	37	0	62	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188959--189014	29	2.0	28	89	10	87	12	35	30	21	1.90
189161--189279	33	3.7	33	94	4	199	10	40	24	25	1.86
189248--189327	41	2.0	40	82	7	99	15	32	27	25	1.95
189248--189327	20	4.0	20	85	7	99	15	32	27	25	1.95
189271--189347	10	7.2	11	72	19	65	12	29	33	23	1.92
189244--189345	53	2.0	51	86	3	141	13	31	30	24	1.94
189244--189348	10	10.1	10	73	17	63	13	32	30	23	1.93
189397--189427	16	1.9	16	93	0	53	29	29	35	6	1.82

Tables:   1

The End!