Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008641.1 Hibiscus syriacus cultivar Beakdansim tig00111617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 241015
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
File 1 of 2
Found at i:2700 original size:23 final size:23
Alignment explanation
Indices: 2667--2722 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
2657 GCTCCTACAG
* *
2667 TGTTCATCTCAGTTGTCTCTCTT
1 TGTTCAACTCAGTTGTCTCTCCT
2690 TGTTCAACTCAGTTGTCTCTCCT
1 TGTTCAACTCAGTTGTCTCTCCT
*
2713 AGTTCAACTC
1 TGTTCAACTC
2723 GCTCATCAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.14, C:0.29, G:0.12, T:0.45
Consensus pattern (23 bp):
TGTTCAACTCAGTTGTCTCTCCT
Found at i:4511 original size:32 final size:32
Alignment explanation
Indices: 4392--4515 Score: 130
Period size: 31 Copynumber: 3.9 Consensus size: 32
4382 ATCCTCGACA
* * * *
4392 ACTGTCTATAGGTTCCGAAGAACTTAGGTAA-
1 ACTGTCCATATGTTCCGTAGAACATAGGTAAT
*
4423 ACTGTCCATATGTTCCTTAGAACATAGGT-AT
1 ACTGTCCATATGTTCCGTAGAACATAGGTAAT
*
4454 ACTGTCCATATG-TCTCG-AAAGACATAGGTAAT
1 ACTGTCCATATGTTC-CGTAGA-ACATAGGTAAT
* *
4486 TCTTTCCATATGTTCCGTAGAACATAGGTA
1 ACTGTCCATATGTTCCGTAGAACATAGGTA
4516 TACCCTCGAC
Statistics
Matches: 77, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
30 5 0.06
31 45 0.58
32 23 0.30
33 4 0.05
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32
Consensus pattern (32 bp):
ACTGTCCATATGTTCCGTAGAACATAGGTAAT
Found at i:11014 original size:31 final size:31
Alignment explanation
Indices: 10979--11037 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
10969 AGGTTAATTT
*
10979 TTAA-TTGAGATTTAAAAATTTATATAAAATA
1 TTAATTTG-GATTTAAAAATTTAGATAAAATA
* *
11010 TTAATTTGGATTTTAAATTTTAGATAAA
1 TTAATTTGGATTTAAAAATTTAGATAAA
11038 TACATTCTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 21 0.88
32 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (31 bp):
TTAATTTGGATTTAAAAATTTAGATAAAATA
Found at i:12399 original size:2 final size:2
Alignment explanation
Indices: 12392--12426 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
12382 ACTATCATTC
12392 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12427 TCATGTCAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:15961 original size:26 final size:25
Alignment explanation
Indices: 15932--15981 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
15922 CTTTACTTTT
15932 GAAAAATAACTTTTAAAAGTGTTGTA
1 GAAAAAT-ACTTTTAAAAGTGTTGTA
* * *
15958 GAAACATATTTTTACAAGTGTTGT
1 GAAAAATACTTTTAAAAGTGTTGT
15982 TCAAAAGTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.40, C:0.06, G:0.16, T:0.38
Consensus pattern (25 bp):
GAAAAATACTTTTAAAAGTGTTGTA
Found at i:17174 original size:45 final size:45
Alignment explanation
Indices: 17125--17211 Score: 149
Period size: 45 Copynumber: 1.9 Consensus size: 45
17115 GAACATCGAA
*
17125 TGCATTTTATGCATCGATGCACATA-CCATGCATCGATGCACTTAG
1 TGCATTTGATGCATCGATGCACA-AGCCATGCATCGATGCACTTAG
17170 TGCATTTGATGCATCGATGCACAAGCCATGCATCGATGCACT
1 TGCATTTGATGCATCGATGCACAAGCCATGCATCGATGCACT
17212 CTGGCTATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
44 1 0.03
45 39 0.98
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (45 bp):
TGCATTTGATGCATCGATGCACAAGCCATGCATCGATGCACTTAG
Found at i:26097 original size:40 final size:40
Alignment explanation
Indices: 26042--26163 Score: 217
Period size: 40 Copynumber: 3.0 Consensus size: 40
26032 TGCAGGTTTA
26042 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
26082 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
* * *
26122 TAATACACTTCGGTGCATATGGTGAGCACGACCTTATATG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
26162 TA
1 TA
26164 GCACTATGGT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (40 bp):
TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
Found at i:26363 original size:47 final size:45
Alignment explanation
Indices: 26268--26394 Score: 148
Period size: 47 Copynumber: 2.8 Consensus size: 45
26258 GTAACCATGC
* * *
26268 AAATAAGCTTATGAGCTTACGGAA-ATAATGGCAAGTATATAGGAA
1 AAATAAGCTTACGAGCTTATGGAATA-AATGGTAAGTATATAGGAA
* * * *
26313 AAATAAGCTTACAAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAA--TAAATGGTAAGTATATAGGAA
*
26360 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
26395 AGATTTTATA
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
45 32 0.46
47 37 0.53
48 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATAGGAA
Found at i:28209 original size:14 final size:15
Alignment explanation
Indices: 28185--28214 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
28175 TTTGATTTTG
28185 TTGTTTCTGGATTGT
1 TTGTTTCTGGATTGT
28200 TTGTTT-TGGATTGT
1 TTGTTTCTGGATTGT
28214 T
1 T
28215 AAATGTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.07, C:0.03, G:0.27, T:0.63
Consensus pattern (15 bp):
TTGTTTCTGGATTGT
Found at i:31624 original size:14 final size:15
Alignment explanation
Indices: 31600--31628 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
31590 TTCAAATGCC
31600 TTTTTGAGCATGTTT
1 TTTTTGAGCATGTTT
31615 TTTTTG-GCATGTTT
1 TTTTTGAGCATGTTT
31629 GAGCAAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.10, C:0.07, G:0.21, T:0.62
Consensus pattern (15 bp):
TTTTTGAGCATGTTT
Found at i:33621 original size:22 final size:22
Alignment explanation
Indices: 33570--33620 Score: 77
Period size: 21 Copynumber: 2.3 Consensus size: 22
33560 CTTGTATTGT
33570 CTTTATTTCACAGTTATTTTTTC
1 CTTT-TTTCACAGTTATTTTTTC
33593 CTTTTTTC-CAGTTATTTTTTC
1 CTTTTTTCACAGTTATTTTTTC
*
33614 TTTTTTT
1 CTTTTTT
33621 TTTCATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 19 0.70
22 4 0.15
23 4 0.15
ACGTcount: A:0.12, C:0.16, G:0.04, T:0.69
Consensus pattern (22 bp):
CTTTTTTCACAGTTATTTTTTC
Found at i:34090 original size:22 final size:23
Alignment explanation
Indices: 34026--34097 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 23
34016 TATGACATGT
* * *
34026 TTTTTGTCTACCTTTATGATACA
1 TTTTTATCTACCTTTATGGTATA
* *
34049 TTTTTATTTACTTTTATGGTATA
1 TTTTTATCTACCTTTATGGTATA
* *
34072 TTTTTCTCTACCTTT-TGGTATG
1 TTTTTATCTACCTTTATGGTATA
34094 TTTT
1 TTTT
34098 CGTTTGTTTG
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 10 0.25
23 30 0.75
ACGTcount: A:0.17, C:0.12, G:0.10, T:0.61
Consensus pattern (23 bp):
TTTTTATCTACCTTTATGGTATA
Found at i:34459 original size:14 final size:14
Alignment explanation
Indices: 34440--34474 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
34430 CGTCCGAGTT
34440 TTATTATAAATATA
1 TTATTATAAATATA
* *
34454 TTATTATAACTTTA
1 TTATTATAAATATA
34468 TTATTAT
1 TTATTAT
34475 TATTTATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (14 bp):
TTATTATAAATATA
Found at i:35682 original size:18 final size:17
Alignment explanation
Indices: 35651--35688 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
35641 ATTATAAGAC
*
35651 TAATTATAATATTAGTA
1 TAATTATAATATTAGGA
35668 TAATTATATATATTAGGA
1 TAATTATA-ATATTAGGA
35686 TAA
1 TAA
35689 CTTTATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (17 bp):
TAATTATAATATTAGGA
Found at i:48577 original size:21 final size:23
Alignment explanation
Indices: 48551--48601 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
48541 ATGTAATCGA
48551 TCCCCCCTTG-A-GGGAACCAAT
1 TCCCCCCTTGAAGGGGAACCAAT
* *
48572 TCCCCCTTTGAAGGGGAACCGAT
1 TCCCCCCTTGAAGGGGAACCAAT
48595 TCCCCCC
1 TCCCCCC
48602 CACAAGGGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 9 0.36
22 1 0.04
23 15 0.60
ACGTcount: A:0.20, C:0.41, G:0.20, T:0.20
Consensus pattern (23 bp):
TCCCCCCTTGAAGGGGAACCAAT
Found at i:56684 original size:35 final size:36
Alignment explanation
Indices: 56611--56687 Score: 104
Period size: 35 Copynumber: 2.2 Consensus size: 36
56601 TTCTCAAGCC
* * *
56611 AATCAAGCCTTCACAAAAGAGTAGTGAATCAATGCA
1 AATCAAGCCTTCACAAAAAAGTAGTGAAGCAATACA
56647 AATCAAGCCTTCA-AAAAAAGTAGTGAAGCAGA-ACA
1 AATCAAGCCTTCACAAAAAAGTAGTGAAGCA-ATACA
56682 AATCAA
1 AATCAA
56688 AAGTTCGATC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 23 0.62
36 14 0.38
ACGTcount: A:0.49, C:0.18, G:0.16, T:0.17
Consensus pattern (36 bp):
AATCAAGCCTTCACAAAAAAGTAGTGAAGCAATACA
Found at i:56884 original size:14 final size:14
Alignment explanation
Indices: 56843--56906 Score: 55
Period size: 14 Copynumber: 4.9 Consensus size: 14
56833 GTCCGAGTTG
* *
56843 TATTATAAATATAT
1 TATTATAATTTTAT
56857 TATTATAATTTTAT
1 TATTATAATTTTAT
*
56871 TATT-T--TATTAT
1 TATTATAATTTTAT
56882 TATTATAA-TTTAT
1 TATTATAATTTTAT
* *
56895 AAATATAATTTT
1 TATTATAATTTT
56907 GGTTACAAGC
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
11 9 0.22
12 1 0.03
13 11 0.28
14 19 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATTATAATTTTAT
Found at i:58243 original size:18 final size:17
Alignment explanation
Indices: 58212--58249 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
58202 ATTATAAGAC
*
58212 TAATTATAATATTAGTA
1 TAATTATAATATTAGGA
58229 TAATTATATATATTAGGA
1 TAATTATA-ATATTAGGA
58247 TAA
1 TAA
58250 CTTTATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (17 bp):
TAATTATAATATTAGGA
Found at i:60331 original size:16 final size:17
Alignment explanation
Indices: 60290--60331 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
60280 TCACGGAATG
60290 TAAGATTATCAGTGGGAA
1 TAAGATTATCAG-GGGAA
*
60308 TAAAATTATCA-GGGAA
1 TAAGATTATCAGGGGAA
*
60324 TAGGATTA
1 TAAGATTA
60332 CTGGGAATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 11 0.52
18 10 0.48
ACGTcount: A:0.43, C:0.05, G:0.24, T:0.29
Consensus pattern (17 bp):
TAAGATTATCAGGGGAA
Found at i:61713 original size:43 final size:43
Alignment explanation
Indices: 61647--61730 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
61637 TTGTTTACAT
* **
61647 AAATATTAAAATAATAATGATTCAATGTGATTAAAATTAAATA
1 AAATATTAAAATAAGAATGATTCAATAAGATTAAAATTAAATA
* * *
61690 AAATATTAAATTAAGAATTATTCAATAAGGTTAAAATTAAA
1 AAATATTAAAATAAGAATGATTCAATAAGATTAAAATTAAA
61731 ATTATTTATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35
Consensus pattern (43 bp):
AAATATTAAAATAAGAATGATTCAATAAGATTAAAATTAAATA
Found at i:62151 original size:32 final size:32
Alignment explanation
Indices: 62091--62183 Score: 93
Period size: 32 Copynumber: 2.9 Consensus size: 32
62081 ATTCACGAGA
* *
62091 GGGA-TTCGCCTGGAATGCATGGCAACACCGTT
1 GGGAGTTCG-CTGGAAAGCATGGCGACACCGTT
*
62123 GGGAG-TCGCTTGGAACAGC-TGGCGACACCTTT
1 GGGAGTTCGC-TGGAA-AGCATGGCGACACCGTT
* *
62155 GGGTGTTGGCTGGAAAGCATGGCGACACC
1 GGGAGTTCGCTGGAAAGCATGGCGACACC
62184 CTTTGGTATC
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
31 4 0.08
32 42 0.82
33 5 0.10
ACGTcount: A:0.20, C:0.24, G:0.35, T:0.20
Consensus pattern (32 bp):
GGGAGTTCGCTGGAAAGCATGGCGACACCGTT
Found at i:62201 original size:32 final size:30
Alignment explanation
Indices: 62100--62215 Score: 90
Period size: 32 Copynumber: 3.7 Consensus size: 30
62090 AGGGATTCGC
* * * *
62100 CTGGAATGCATGGCAACACCGTTGGGAGTCG
1 CTGGAAAGCATGGCGACACCTTTGGTA-TCG
* *
62131 CTTGGAACAGC-TGGCGACACCTTTGGGTGTTGG
1 C-TGGAA-AGCATGGCGACACCTTT-GGT-ATCG
62164 CTGGAAAGCATGGCGACACCCTTTGGTATCG
1 CTGGAAAGCATGGCGACA-CCTTTGGTATCG
* *
62195 CATGGAAGGGATGGCGACACC
1 C-TGGAAAGCATGGCGACACC
62216 AATTGTACAG
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
31 9 0.13
32 47 0.69
33 12 0.18
ACGTcount: A:0.22, C:0.23, G:0.34, T:0.21
Consensus pattern (30 bp):
CTGGAAAGCATGGCGACACCTTTGGTATCG
Found at i:64809 original size:21 final size:21
Alignment explanation
Indices: 64783--64844 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
64773 TGAAAGTCTC
*
64783 GACCTTT-ACCTCTTCCGACGA
1 GACCTTTCACCTC-CCCGACGA
*
64804 GACCTTTCACTTCCCCGACGA
1 GACCTTTCACCTCCCCGACGA
* *
64825 GACCTTTCACTTTCCCGACG
1 GACCTTTCACCTCCCCGACG
64845 TTCTTGCTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 33 0.89
22 4 0.11
ACGTcount: A:0.18, C:0.40, G:0.15, T:0.27
Consensus pattern (21 bp):
GACCTTTCACCTCCCCGACGA
Found at i:65538 original size:9 final size:8
Alignment explanation
Indices: 65526--65598 Score: 58
Period size: 9 Copynumber: 8.5 Consensus size: 8
65516 AAAAAATGAA
65526 AATAAAATT
1 AATAAAA-T
65535 AATAAAAT
1 AATAAAAT
65543 AA-AAAAT
1 AATAAAAT
65550 AATAAAAT
1 AATAAAAT
*
65558 AAAAATAAAT
1 -AATA-AAAT
* *
65568 AACAAAGTT
1 AATAAA-AT
65577 AATAATAAT
1 AATAA-AAT
65586 AATAATAAT
1 AATAA-AAT
65595 AATA
1 AATA
65599 TATAAAAAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
7 7 0.13
8 10 0.19
9 32 0.59
10 5 0.09
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.26
Consensus pattern (8 bp):
AATAAAAT
Found at i:65562 original size:42 final size:45
Alignment explanation
Indices: 65516--65609 Score: 108
Period size: 45 Copynumber: 2.2 Consensus size: 45
65506 GGACCTGACA
* *
65516 AAAAAATGAA-AATAAAATTAATAA-AATAA-AA-AATAATAAA-
1 AAAAAATAAATAACAAAATTAATAATAATAATAATAATAATAAAT
* *
65556 ATAAAAATAAATAACAAAGTTAATAATAATAATAATAATAATATAT
1 A-AAAAATAAATAACAAAATTAATAATAATAATAATAATAATAAAT
65602 AAAAAATA
1 AAAAAATA
65610 TTTTTCAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
40 1 0.02
41 8 0.18
42 12 0.27
43 5 0.11
44 2 0.05
45 15 0.34
46 1 0.02
ACGTcount: A:0.72, C:0.01, G:0.02, T:0.24
Consensus pattern (45 bp):
AAAAAATAAATAACAAAATTAATAATAATAATAATAATAATAAAT
Found at i:65568 original size:15 final size:14
Alignment explanation
Indices: 65515--65569 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 14
65505 TGGACCTGAC
65515 AAAAAAATGAAAATA
1 AAAAAAAT-AAAATA
**
65530 AAATTAATAAAATA
1 AAAAAAATAAAATA
65544 AAAAATAATAAAATA
1 AAAAA-AATAAAATA
65559 AAAATAAATAA
1 AAAA-AAATAA
65570 CAAAGTTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
14 9 0.26
15 24 0.71
16 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (14 bp):
AAAAAAATAAAATA
Found at i:65584 original size:3 final size:3
Alignment explanation
Indices: 65534--65603 Score: 51
Period size: 3 Copynumber: 24.0 Consensus size: 3
65524 AAAATAAAAT
* * *
65534 TAA TAA -AA TAA -AA -AA TAA TAA -AA TAA AAA TAAA TAA CAA -AGT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA-A
65576 TAA TAA TAA TAA TAA TAA TAA TATA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA
65604 AAAATATTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
2 9 0.16
3 39 0.71
4 7 0.13
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:65594 original size:15 final size:14
Alignment explanation
Indices: 65526--65609 Score: 59
Period size: 15 Copynumber: 5.9 Consensus size: 14
65516 AAAAAATGAA
65526 AATAAAATTAATAA-
1 AATAAAA-TAATAAT
65540 AATAAAA-AATAAT
1 AATAAAATAATAAT
*
65553 AA-AATAAAAATAAAT
1 AATAA-AATAAT-AAT
* *
65568 AACAAAGTTAATAAT
1 AATAAA-ATAATAAT
65583 AATAATAATAATAAT
1 AATAA-AATAATAAT
65598 ATATAAAA-AATA
1 A-ATAAAATAATA
65610 TTTTTCAAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
12 7 0.12
13 4 0.07
14 14 0.24
15 23 0.40
16 10 0.17
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.26
Consensus pattern (14 bp):
AATAAAATAATAAT
Found at i:65663 original size:36 final size:35
Alignment explanation
Indices: 65623--65987 Score: 185
Period size: 36 Copynumber: 10.4 Consensus size: 35
65613 TTCAAAAACC
*
65623 TATATAATATATATTTTCAAAAGTATTTTAAAATTA
1 TATATAATATATATTTTCAAAAGT-TTTTAAAACTA
* * * *
65659 TATATTATATATTTTTTTAAAA-TGTTTT-CAA--A
1 TATATAATATATATTTTCAAAAGT-TTTTAAAACTA
*
65691 -AT-T-ATATA-GTTTTCAAAAATGTTTTTAAAACTA
1 TATATAATATATATTTTC-AAAA-GTTTTTAAAACTA
* *
65724 TATACT-ATATA-ATTTTCAAAATGATTTCAAAA-T-
1 TATA-TAATATATATTTTCAAAA-GTTTTTAAAACTA
65757 TATATAATATATATGTTTTCAAAATGTTTTT-AAA--A
1 TATATAATATATA--TTTTCAAAA-GTTTTTAAAACTA
* *
65792 -A-CT-ATATATATTTTCAAAATGTTTTAAAAAC-A
1 TATATAATATATATTTTCAAAA-GTTTTTAAAACTA
*
65824 -ATATAATATATATTTTCAAAAATGTTTTAAAAACTA
1 TATATAATATATATTTTC-AAAA-GTTTTTAAAACTA
* * **
65860 TATATTATATTTATTTTCAAATTTTTTTTAAAAACTA
1 TATATAATATATATTTTCAAA-AGTTTTT-AAAACTA
* * * *
65897 TATAATATATAAATGTTTTCAAACATGTTTTCAAAACCA
1 TAT-ATA-ATATATATTTTCAAA-A-GTTTTTAAAACTA
* * * * *
65936 TATATTATATATGTTTTTAAAAATATTTTCAAACTA
1 TATATAATATATATTTTCAAAAGT-TTTTAAAACTA
65972 TATACTATATATATAT
1 TATA-TA-ATATATAT
65988 ATATGATAAA
Statistics
Matches: 261, Mismatches: 39, Indels: 56
0.73 0.11 0.16
Matches are distributed among these distances:
28 4 0.02
29 9 0.03
30 20 0.08
31 8 0.03
32 11 0.04
33 12 0.05
34 19 0.07
35 38 0.15
36 65 0.25
37 39 0.15
38 11 0.04
39 21 0.08
40 4 0.02
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (35 bp):
TATATAATATATATTTTCAAAAGTTTTTAAAACTA
Found at i:65695 original size:29 final size:29
Alignment explanation
Indices: 65662--65762 Score: 94
Period size: 29 Copynumber: 3.3 Consensus size: 29
65652 AAAATTATAT
*
65662 ATTATATATTTTTTTAAAATGTTTTCAAA
1 ATTATATATTTTTTAAAAATGTTTTCAAA
* * *
65691 ATTATATAGTTTTCAAAAATGTTTTTAAA
1 ATTATATATTTTTTAAAAATGTTTTCAAA
* *
65720 ACTATATACTATATAATTTTCAAAATGATTTCAAA
1 A-T-TATA-TAT-T--TTTTAAAAATGTTTTCAAA
65755 ATTATATA
1 ATTATATA
65763 ATATATATGT
Statistics
Matches: 57, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
29 26 0.46
30 1 0.02
31 4 0.07
32 4 0.07
33 5 0.09
34 1 0.02
35 16 0.28
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.48
Consensus pattern (29 bp):
ATTATATATTTTTTAAAAATGTTTTCAAA
Found at i:65753 original size:64 final size:63
Alignment explanation
Indices: 65630--65762 Score: 180
Period size: 64 Copynumber: 2.1 Consensus size: 63
65620 ACCTATATAA
* * * * *
65630 TATATATTTTCAAAAGTATTTTAAAATTATATATTATATATTTTTTTAAAATGTTTTCAAAAT
1 TATATATTTTCAAAAGTATTTTAAAACTATATACTATATATATTTTCAAAATGATTTCAAAAT
65693 TATATAGTTTTCAAAAATGT-TTTTAAAACTATATACTATATA-ATTTTCAAAATGATTTCAAAA
1 TATATA-TTTTC-AAAA-GTATTTTAAAACTATATACTATATATATTTTCAAAATGATTTCAAAA
65756 T
63 T
65757 TATATA
1 TATATA
65763 ATATATATGT
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
63 6 0.10
64 30 0.48
65 24 0.39
66 2 0.03
ACGTcount: A:0.43, C:0.05, G:0.04, T:0.48
Consensus pattern (63 bp):
TATATATTTTCAAAAGTATTTTAAAACTATATACTATATATATTTTCAAAATGATTTCAAAAT
Found at i:65798 original size:30 final size:29
Alignment explanation
Indices: 65764--65864 Score: 130
Period size: 30 Copynumber: 3.2 Consensus size: 29
65754 AATTATATAA
*
65764 TATATATGTTTTCAAAATGTTTTTAAAAAC
1 TATATATATTTTCAAAATG-TTTTAAAAAC
65794 TATATATATTTTCAAAATGTTTTAAAAAC
1 TATATATATTTTCAAAATGTTTTAAAAAC
65823 AATATAATATATATTTTCAAAAATGTTTTAAAAAC
1 ----T-ATATATATTTTC-AAAATGTTTTAAAAAC
65858 TATATAT
1 TATATAT
65865 TATATTTATT
Statistics
Matches: 64, Mismatches: 1, Indels: 12
0.83 0.01 0.16
Matches are distributed among these distances:
29 10 0.16
30 24 0.38
31 1 0.02
33 1 0.02
34 12 0.19
35 16 0.25
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.45
Consensus pattern (29 bp):
TATATATATTTTCAAAATGTTTTAAAAAC
Found at i:65798 original size:37 final size:36
Alignment explanation
Indices: 65693--65983 Score: 255
Period size: 35 Copynumber: 8.2 Consensus size: 36
65683 TTTTCAAAAT
* *
65693 TATATA-GTTTTCAAAAATGTTTTTAAAACTATATAC
1 TATATATGTTTTC-AAAATGTTTTAAAAACTATATAA
* * * *
65729 TATATA-ATTTTCAAAATGATTTCAAAATTATATAA
1 TATATATGTTTTCAAAATGTTTTAAAAACTATATAA
65764 TATATATGTTTTCAAAATGTTTTTAAAAAC----T-A
1 TATATATGTTTTCAAAATG-TTTTAAAAACTATATAA
*
65796 TATATA--TTTTCAAAATGTTTTAAAAACAATATAA
1 TATATATGTTTTCAAAATGTTTTAAAAACTATATAA
*
65830 TATATA--TTTTCAAAAATGTTTTAAAAACTATATAT
1 TATATATGTTTTC-AAAATGTTTTAAAAACTATATAA
* * * *
65865 TATATTTATTTTCAAATTTTTTTTAAAAACTATATAA
1 TATATATGTTTTCAAA-ATGTTTTAAAAACTATATAA
* * *
65902 TATATAAATGTTTTCAAACATGTTTTCAAAACCATATAT
1 TATAT--ATGTTTTCAAA-ATGTTTTAAAAACTATATAA
* * * *
65941 TATATATGTTTTTAAAAATATTTT-CAAACTATATAC
1 TATATATG-TTTTCAAAATGTTTTAAAAACTATATAA
65977 TATATAT
1 TATATAT
65984 ATATATATGA
Statistics
Matches: 213, Mismatches: 28, Indels: 28
0.79 0.10 0.10
Matches are distributed among these distances:
29 10 0.05
30 11 0.05
32 7 0.03
33 2 0.01
34 12 0.06
35 51 0.24
36 41 0.19
37 43 0.20
38 7 0.03
39 29 0.14
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.46
Consensus pattern (36 bp):
TATATATGTTTTCAAAATGTTTTAAAAACTATATAA
Found at i:65862 original size:101 final size:102
Alignment explanation
Indices: 65624--65900 Score: 350
Period size: 101 Copynumber: 2.7 Consensus size: 102
65614 TCAAAAACCT
* * * * *
65624 ATATAATATATATTTTCAAAAGTATTTTAAAATTATATATTATATATTTTTTTAAAATG-TTTTC
1 ATATAATATATATTTTCAAAAATGTTTTAAAATTATATATTATATATATTTTCAAAATGTTTTTA
* *
65688 AAAA-T-TATATAGTTTTCAAAAATGTTTTTAAAACT
66 AAAACTATATATAGTTTTCAAAAATGTTTTAAAAACA
* * * *
65723 ATATACTATATAATTTTC-AAAATGATTTCAAAATTATATAATATATATGTTTTCAAAATGTTTT
1 ATATAATATAT-ATTTTCAAAAATG-TTTTAAAATTATATATTATATATATTTTCAAAATGTTTT
65787 TAAAAACTATATATA-TTTTC-AAAATGTTTTAAAAACA
64 TAAAAACTATATATAGTTTTCAAAAATGTTTTAAAAACA
* * * *
65824 ATATAATATATATTTTCAAAAATGTTTTAAAAACTATATATTATATTTATTTTCAAATTTTTTTT
1 ATATAATATATATTTTCAAAAATGTTTT-AAAATTATATATTATATATATTTTCAAAATGTTTTT
65889 AAAAACTATATA
65 AAAAACTATATA
65901 ATATATAAAT
Statistics
Matches: 153, Mismatches: 18, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
99 14 0.09
100 46 0.30
101 81 0.53
102 6 0.04
103 6 0.04
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.47
Consensus pattern (102 bp):
ATATAATATATATTTTCAAAAATGTTTTAAAATTATATATTATATATATTTTCAAAATGTTTTTA
AAAACTATATATAGTTTTCAAAAATGTTTTAAAAACA
Found at i:67478 original size:26 final size:26
Alignment explanation
Indices: 67442--67502 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
67432 CAGGAGTGAA
67442 TAAATTTTATACTAAGATAAATTTAT
1 TAAATTTTATACTAAGATAAATTTAT
67468 TAAATTTTATACTAAGATAAATTTAT
1 TAAATTTTATACTAAGATAAATTTAT
67494 TAAATTTTA
1 TAAATTTTA
67503 AAAATAACTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (26 bp):
TAAATTTTATACTAAGATAAATTTAT
Found at i:74109 original size:2 final size:2
Alignment explanation
Indices: 74102--74130 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
74092 ATGATGGTTG
74102 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
74131 GTGTGTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:75159 original size:72 final size:73
Alignment explanation
Indices: 75072--75220 Score: 282
Period size: 72 Copynumber: 2.1 Consensus size: 73
75062 TAATCCCTCA
*
75072 TAATTGATTGTAAAAGATTCGATTCGAATATAAAATAAAAATCAATCTTTGCATAAAATTAATCG
1 TAATTGATTGTAAAAGATTCGATTCGAATATAAAATAAAAATCAATCTTTGCATAAAATAAATCG
75137 TTATTTAG
66 TTATTTAG
75145 TAATTGA-TGTAAAAGATTCGATTCGAATATAAAATAAAAATCAATCTTTGCATAAAATAAATCG
1 TAATTGATTGTAAAAGATTCGATTCGAATATAAAATAAAAATCAATCTTTGCATAAAATAAATCG
75209 TTATTTAG
66 TTATTTAG
75217 TAAT
1 TAAT
75221 ATGCATCAAT
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
72 68 0.91
73 7 0.09
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.36
Consensus pattern (73 bp):
TAATTGATTGTAAAAGATTCGATTCGAATATAAAATAAAAATCAATCTTTGCATAAAATAAATCG
TTATTTAG
Found at i:77308 original size:3 final size:3
Alignment explanation
Indices: 77287--77341 Score: 58
Period size: 3 Copynumber: 17.7 Consensus size: 3
77277 TATGTAACAA
* *
77287 AAT AATT AAT AAC AAT AAT AAT AA- AAT AAAT AAT AAT AAT AAT ATT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT
77333 AAAT AAT AA
1 -AAT AAT AA
77342 AAAGAAGACC
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
2 2 0.05
3 34 0.77
4 8 0.18
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:77312 original size:24 final size:23
Alignment explanation
Indices: 77285--77339 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
77275 AATATGTAAC
77285 AAAATAATTAATAACAATAATAAT
1 AAAATAATTAATAACAATAAT-AT
* *
77309 AAAATAAATAATAATAATAATAT
1 AAAATAATTAATAACAATAATAT
*
77332 TAAATAAT
1 AAAATAAT
77340 AAAAAGAAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATTAATAACAATAATAT
Found at i:77323 original size:18 final size:19
Alignment explanation
Indices: 77287--77341 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
77277 TATGTAACAA
*
77287 AATAATTAAT-AACAATAAT
1 AATAA-TAATAAATAATAAT
77306 AATAA-AATAAATAATAAT
1 AATAATAATAAATAATAAT
*
77324 AATAATATTAAATAATAA
1 AATAATAATAAATAATAA
77342 AAAGAAGACC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 3 0.09
18 13 0.41
19 16 0.50
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AATAATAATAAATAATAAT
Found at i:77748 original size:134 final size:133
Alignment explanation
Indices: 77530--77886 Score: 498
Period size: 134 Copynumber: 2.7 Consensus size: 133
77520 TCGGATCGTT
* * * * * *
77530 TAAGAGTGACACGGTTCCTACGTGATGAGGAACTTTGGTCGGGGGATGACACGGCTCATACATGA
1 TAAGGGTGACACGGCTCCTACGTGATGAAGAA-TCTGGTCGGGGGATGACACGACTCATACGTGA
* * * * *
77595 TGAAGAATTCTGGGCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGCGGTGAGAACGACTGGT
65 TGAAGAGTTCTGGACATCTTTAGGAAGGGTGATAACTCAGTTCCTACACGATGAGAACGACTGGT
77660 TATC
130 TATC
* *
77664 TAGGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGGATGACACGACTCATACGTGA
1 TAAGGGTGACACGGCTCCTACGTGATGAAGA-ATCTGGTCGGGGGATGACACGACTCATACGTGA
* * * *
77729 TGAAGAGTTATGGATATCTTTAGGAAGGGTGATAACTCAGTTCCTACACGATGGGGACGACTGGT
65 TGAAGAGTTCTGGACATCTTTAGGAAGGGTGATAACTCAGTTCCTACACGATGAGAACGACTGGT
77794 TATC
130 TATC
* * *
77798 TAAGGGTGACACGACTCCTACGTGATAAAGACATCTGGTCGGGGGATGACACGACTAATACGTGA
1 TAAGGGTGACACGGCTCCTACGTGATGAAGA-ATCTGGTCGGGGGATGACACGACTCATACGTGA
*
77863 TGAAGAGTTCTGGCCATCTTTAGG
65 TGAAGAGTTCTGGACATCTTTAGG
77887 GATAATGATT
Statistics
Matches: 196, Mismatches: 26, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
134 195 0.99
135 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (133 bp):
TAAGGGTGACACGGCTCCTACGTGATGAAGAATCTGGTCGGGGGATGACACGACTCATACGTGAT
GAAGAGTTCTGGACATCTTTAGGAAGGGTGATAACTCAGTTCCTACACGATGAGAACGACTGGTT
ATC
Found at i:77943 original size:28 final size:28
Alignment explanation
Indices: 77895--77984 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
77885 GGGATAATGA
** * **
77895 TTTCAAAAGAAACCGACTCAAAGATAAG
1 TTTCAAAAGAAATAGAATCAAAGATTTG
77923 TTTCAAAAGAAATAGAATCAAAGATTTG
1 TTTCAAAAGAAATAGAATCAAAGATTTG
77951 TTTCAAGAA-AAATA-AACTCAAAGATTTG
1 TTTCAA-AAGAAATAGAA-TCAAAGATTTG
77979 TTTCAA
1 TTTCAA
77985 GAAAAACAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 2 0.04
28 51 0.93
29 2 0.04
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.27
Consensus pattern (28 bp):
TTTCAAAAGAAATAGAATCAAAGATTTG
Found at i:77985 original size:28 final size:28
Alignment explanation
Indices: 77910--78003 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
77900 AAAGAAACCG
**
77910 ACTCAAAGATAAGTTTCAA-AAGAAATAGA
1 ACTCAAAGATTTGTTTCAAGAA-AAATA-A
77939 A-TCAAAGATTTGTTTCAAGAAAAATAA
1 ACTCAAAGATTTGTTTCAAGAAAAATAA
*
77966 ACTCAAAGATTTGTTTCAAGAAAAACAA
1 ACTCAAAGATTTGTTTCAAGAAAAATAA
77994 ACTCAAAGAT
1 ACTCAAAGAT
78004 GATGTGTTTT
Statistics
Matches: 60, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
27 2 0.03
28 55 0.92
29 3 0.05
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.24
Consensus pattern (28 bp):
ACTCAAAGATTTGTTTCAAGAAAAATAA
Found at i:78352 original size:32 final size:33
Alignment explanation
Indices: 78305--78374 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 33
78295 CAAAGTTTGG
* *
78305 TGTTTCGAGAGAAACAAACTCAAAGATGTT-TT
1 TGTTTCAAGAAAAACAAACTCAAAGATGTTGTT
*
78337 TGTTTCAAGAAAAACAAACTCAAAGATTTTGTT
1 TGTTTCAAGAAAAACAAACTCAAAGATGTTGTT
78370 TGTTT
1 TGTTT
78375 ATTTTTCAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 27 0.79
33 7 0.21
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (33 bp):
TGTTTCAAGAAAAACAAACTCAAAGATGTTGTT
Found at i:78476 original size:65 final size:63
Alignment explanation
Indices: 78406--78544 Score: 206
Period size: 65 Copynumber: 2.2 Consensus size: 63
78396 CAAAGATGGT
78406 AAATTTTGTTTCCAAAGAAACAGACTCAAAGATTTTTCTTAAAAGAAACTGTCTCAAAAGAGACA
1 AAATTTTGTTTCCAAAGAAACAGACTCAAAGATTTTTC--AAAAGAAACTGTCTCAAAAGAGACA
* * * * *
78471 AAATTTTGTTTCCAAAGAAACATATTCAATGATTTTTCAAAAGAAATTGTCTCAAGAGAGACA
1 AAATTTTGTTTCCAAAGAAACAGACTCAAAGATTTTTCAAAAGAAACTGTCTCAAAAGAGACA
*
78534 AAACTTTGTTT
1 AAATTTTGTTT
78545 TTTCAGAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
63 33 0.49
65 35 0.51
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (63 bp):
AAATTTTGTTTCCAAAGAAACAGACTCAAAGATTTTTCAAAAGAAACTGTCTCAAAAGAGACA
Found at i:78553 original size:63 final size:64
Alignment explanation
Indices: 78410--78544 Score: 200
Period size: 63 Copynumber: 2.1 Consensus size: 64
78400 GATGGTAAAT
*
78410 TTTGTTTCCAAAGAAACAGACTCAAAGATTTTTCTTAAAAGAAACTGTCTCAAAAGAGACAAAAT
1 TTTGTTTCCAAAGAAACAGACTCAAAGATTTTTC-TAAAAGAAACTGTCTCAAAAGAGACAAAAC
* * * * *
78475 TTTGTTTCCAAAGAAACATATTCAATGATTTTTC-AAAAGAAATTGTCTCAAGAGAGACAAAAC
1 TTTGTTTCCAAAGAAACAGACTCAAAGATTTTTCTAAAAGAAACTGTCTCAAAAGAGACAAAAC
78538 TTTGTTT
1 TTTGTTT
78545 TTTCAGAAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
63 33 0.52
65 31 0.48
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (64 bp):
TTTGTTTCCAAAGAAACAGACTCAAAGATTTTTCTAAAAGAAACTGTCTCAAAAGAGACAAAAC
Found at i:78686 original size:32 final size:32
Alignment explanation
Indices: 78641--78766 Score: 98
Period size: 32 Copynumber: 3.9 Consensus size: 32
78631 GGGATAAAAC
*
78641 CTTGTTTCCAGAGAAACAAACTCAAAGATGAT
1 CTTGTTTCAAGAGAAACAAACTCAAAGATGAT
* * **
78673 CTTGTTTTAAGAGAAA-ATATCTCAAGAGTCAAAAT
1 CTTGTTTCAAGAGAAACA-AACTCAA-AG--ATGAT
* *
78708 -TCT-TTTCAAGGGAAAC-AACTCAAAGATGGT
1 CT-TGTTTCAAGAGAAACAAACTCAAAGATGAT
* *
78738 TTTATTTCAAGAGAAACAAACTCAAAGAT
1 CTTGTTTCAAGAGAAACAAACTCAAAGAT
78767 TTTATATTTC
Statistics
Matches: 73, Mismatches: 12, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
30 3 0.04
31 14 0.19
32 33 0.45
33 8 0.11
34 11 0.15
35 4 0.05
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (32 bp):
CTTGTTTCAAGAGAAACAAACTCAAAGATGAT
Found at i:78793 original size:31 final size:31
Alignment explanation
Indices: 78711--78785 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 31
78701 TCAAAATTCT
*
78711 TTTCAAGGGAAAC-AACTCAAAGATGGTTTTA
1 TTTCAAGAGAAACAAACTCAAAGAT-GTTTTA
78742 TTTCAAGAGAAACAAACTCAAAGAT-TTTATA
1 TTTCAAGAGAAACAAACTCAAAGATGTTT-TA
*
78773 TTTCTAGAGAAAC
1 TTTCAAGAGAAAC
78786 TGCCTCAAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
30 3 0.08
31 26 0.65
32 11 0.28
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (31 bp):
TTTCAAGAGAAACAAACTCAAAGATGTTTTA
Found at i:79154 original size:30 final size:31
Alignment explanation
Indices: 79101--79158 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
79091 TTTTTTCATT
**
79101 TTGTTTCAAGTGAAACAGACTCAAAGATCCC
1 TTGTTTCAAAAGAAACAGACTCAAAGATCCC
79132 TTGTTTCAAAAGAAAC-GACTCAAAGAT
1 TTGTTTCAAAAGAAACAGACTCAAAGAT
79159 GATGTTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (31 bp):
TTGTTTCAAAAGAAACAGACTCAAAGATCCC
Found at i:79316 original size:36 final size:35
Alignment explanation
Indices: 79200--79305 Score: 151
Period size: 36 Copynumber: 3.0 Consensus size: 35
79190 TTTGGAAAAA
*
79200 TGTCTCAAGTGAGACAACATTTGTTTTTAGAGAAAT
1 TGTCTCAAGCGAGACAA-ATTTGTTTTTAGAGAAAT
* *
79236 TGTCTCAAACGAGACAAAAATTGTTTTTAGAGAAAT
1 TGTCTCAAGCGAGAC-AAATTTGTTTTTAGAGAAAT
79272 TGTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAA
1 TGTCTCAAGCGAGACAAA-TTTGTTTTTAGAGAAA
79306 ACGATCTCAA
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
35 9 0.14
36 52 0.83
37 2 0.03
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (35 bp):
TGTCTCAAGCGAGACAAATTTGTTTTTAGAGAAAT
Found at i:79331 original size:36 final size:36
Alignment explanation
Indices: 79196--79333 Score: 127
Period size: 36 Copynumber: 3.8 Consensus size: 36
79186 ACAATTTGGA
* *
79196 AAAATGTCTCAAGTGAGAC-AACATTTGTTTTTAGAG
1 AAAACGTCTCAAGCGAGACAAAC-TTTGTTTTTAGAG
** * **
79232 AAATTGTCTCAAACGAGACAAAAATTGTTTTTAGAG
1 AAAACGTCTCAAGCGAGACAAACTTTGTTTTTAGAG
** *
79268 AAATTGTCTCAAGCGAGACAAAGTTTGTTTTT-GAG
1 AAAACGTCTCAAGCGAGACAAACTTTGTTTTTAGAG
* **
79303 AAAACGATCTCAAGTGAGATTAACTTTGTTT
1 AAAACG-TCTCAAGCGAGACAAACTTTGTTT
79334 AATGTGAAAC
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
35 7 0.08
36 77 0.90
37 2 0.02
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (36 bp):
AAAACGTCTCAAGCGAGACAAACTTTGTTTTTAGAG
Found at i:79474 original size:106 final size:102
Alignment explanation
Indices: 79272--79480 Score: 239
Period size: 106 Copynumber: 2.0 Consensus size: 102
79262 TTAGAGAAAT
* *
79272 TGTCTCAAGCGAGACAAAGTTTGTTTTTGAGAAAACGATCTCAAGTGAGATTAACTTTGTTTAAT
1 TGTCTCAAACGAGACAAAGTTTGTTTTTGAGAAAACAATCTCAAGTGAGATTAACTTTGTTTAAT
* *
79337 GTGAAACAAATTCGAAATTTGTATTCACAAAGGAAAAA
66 GTGAAACAAATTCAAAATTTATATT-ACAAAGGAAAAA
*
79375 TGTCTCAAACGAGACGAAA-TTTG-TTTTGAAAGAAATAACAATCTCAAGTGAGATTAAATTTTG
1 TGTCTCAAACGAGAC-AAAGTTTGTTTTTG--AG-AA-AACAATCTCAAGTGAGATT-AACTTTG
*
79438 TTTCAA-GTGAATCAAATTCAAAAAATTTATA-T-CAAAGGAAAAA
60 TTT-AATGTGAAACAAATTC--AAAATTTATATTACAAAGGAAAAA
79481 AAATGTCTGA
Statistics
Matches: 91, Mismatches: 6, Indels: 15
0.81 0.05 0.13
Matches are distributed among these distances:
102 5 0.05
103 18 0.20
104 5 0.05
105 2 0.02
106 29 0.32
107 21 0.23
108 3 0.03
109 8 0.09
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (102 bp):
TGTCTCAAACGAGACAAAGTTTGTTTTTGAGAAAACAATCTCAAGTGAGATTAACTTTGTTTAAT
GTGAAACAAATTCAAAATTTATATTACAAAGGAAAAA
Found at i:79507 original size:109 final size:105
Alignment explanation
Indices: 79272--79519 Score: 260
Period size: 109 Copynumber: 2.3 Consensus size: 105
79262 TTAGAGAAAT
* *
79272 TGTCTCAAGCGAGACAAAGTTTGTTTTTG--AG-AA-AACGATCTCAAGTGAGATTAACTTTGTT
1 TGTCTCAAGCGAGACGAAGTTTG-TTTTGAAAGAAATAACAATCTCAAGTGAGATTAACTTTGTT
* *
79333 TAATGTGAAACAAATTCGAAATTTGTATTCACAAAGGAAAAA
65 TAATGTGAAACAAATTCAAAATTTATATT-ACAAAGGAAAAA
* * *
79375 TGTCTCAAACGAGACGAAATTTGTTTTGAAAGAAATAACAATCTCAAGTGAGATTAAATTTTGTT
1 TGTCTCAAGCGAGACGAAGTTTGTTTTGAAAGAAATAACAATCTCAAGTGAGATT-AACTTTGTT
*
79440 TCAA-GTGAATCAAATTCAAAAAATTTATA-T-CAAAGGAAAAAAAA
65 T-AATGTGAAACAAATTC--AAAATTTATATTACAAAGG---AAAAA
* *
79484 TGTCTGAAGCAAGACGAAGTTTGTTTT-AACAGAAAT
1 TGTCTCAAGCGAGACGAAGTTTGTTTTGAA-AGAAAT
79520 TGTCTTAAAT
Statistics
Matches: 121, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
102 5 0.04
103 20 0.17
104 2 0.02
105 2 0.02
106 24 0.20
107 21 0.17
108 5 0.04
109 42 0.35
ACGTcount: A:0.42, C:0.11, G:0.17, T:0.30
Consensus pattern (105 bp):
TGTCTCAAGCGAGACGAAGTTTGTTTTGAAAGAAATAACAATCTCAAGTGAGATTAACTTTGTTT
AATGTGAAACAAATTCAAAATTTATATTACAAAGGAAAAA
Found at i:79693 original size:153 final size:155
Alignment explanation
Indices: 79478--79756 Score: 418
Period size: 153 Copynumber: 1.8 Consensus size: 155
79468 ATCAAAGGAA
* * * * * *
79478 AAAAAATGTCTGAAGCAAGACGAAGTTTGTTTTAACAGAAATTGTCTTAAATGAGACAAAATTTG
1 AAAAAATGTCTCAAGCAAGACAAAATTTGCTTTAACAGAAATTGTCTCAAACGAGACAAAATTTG
*
79543 -TTTTAAAATTCTCAAAATTTATGG-GAAATGTCTCAAGCGAGAAAGAATTTTGTTTCAAGTACA
66 TTTTTAAAATTCTCAAAATTTATGGAAAAATGTCTCAAGCGAGAAAGAATTTTGTTTCAAGTACA
79606 ACAAATTTAAATTTGTATCTTAGAG
131 ACAAATTTAAATTTGTATCTTAGAG
* * * * *
79631 AAAAAATGTCTCAAGCTAGTCAAAATTTGCTTTGATAGAAATTGTCTCAAGCGAGACAAAATTTG
1 AAAAAATGTCTCAAGCAAGACAAAATTTGCTTTAACAGAAATTGTCTCAAACGAGACAAAATTTG
* *
79696 TTTTTAAAATTCTCAAAATTTGTGGAAAAATGTCTCAAGCGAGACAGAATTTTGTTTCAAG
66 TTTTTAAAATTCTCAAAATTTATGGAAAAATGTCTCAAGCGAGAAAGAATTTTGTTTCAAG
79757 AAAAACACCC
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
153 54 0.49
154 23 0.21
155 33 0.30
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.33
Consensus pattern (155 bp):
AAAAAATGTCTCAAGCAAGACAAAATTTGCTTTAACAGAAATTGTCTCAAACGAGACAAAATTTG
TTTTTAAAATTCTCAAAATTTATGGAAAAATGTCTCAAGCGAGAAAGAATTTTGTTTCAAGTACA
ACAAATTTAAATTTGTATCTTAGAG
Found at i:80028 original size:4 final size:4
Alignment explanation
Indices: 80019--83706 Score: 6400
Period size: 4 Copynumber: 923.2 Consensus size: 4
80009 TAATGCAAAT
80019 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80067 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80115 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80163 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80211 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80259 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80307 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80355 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80403 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80451 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80499 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80547 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80595 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80643 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80691 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80739 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80787 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80835 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80883 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80931 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
80979 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81027 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81075 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81123 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81171 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81219 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81267 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81315 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
81363 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGCA TGCA TGCA TGCA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * * *
81411 TGTA TGCA TGCA TGCA TGCA TGCA TGTA TGTA TGTA TGCA TGCA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81459 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81507 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * *
81555 TGTA TGTA TGCA TGCA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TTGGA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -TGTA
* * * * * * * * *
81604 AGGA -GAA TGGT- TGCGA GAGCA -GTC T-TCA CTCTA T-CA T-TGA T-TCA
1 TGTA TGTA T-GTA TG-TA -TGTA TGTA TGT-A -TGTA TGTA TGT-A TGT-A
* * ** * *
81648 -GTT TGTC TACA TTTCCA -CTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGT--A TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81696 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81744 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81792 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
81840 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TTGGA AGGA -GAA TGGT-
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -TGTA TGTA TGTA T-GTA
* * * * * * * * **
81888 TGCGA GAGCA -GTC T-TCA CTCTA T-CA T-TGA T-TCA -GTT TGTC TACA
1 TG-TA -TGTA TGTA TGT-A -TGTA TGTA TGT-A TGT-A TGTA TGTA TGTA
* *
81932 TTTCCA -CTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGT--A TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
81981 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82029 TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82075 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82123 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82171 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82219 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82267 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82315 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82363 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82411 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82459 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82507 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82555 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82603 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82651 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82699 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82747 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82795 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82843 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82891 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82939 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
82987 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
83035 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
83083 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
83131 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA --TA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
83177 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGCA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * * * * * *
83225 TGCA TGTA TGCA TGTA TGCA TGCA TGCA TGCA TGCA TGCA TGCA TGCA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* *
83273 TGCA TGCA TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
83319 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
83367 TGTA TG-A TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
83414 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
83462 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
83510 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
83558 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGCA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * * * * *
83606 TGCA TGCA TGCA TGTA TGTA TGTA TGCA TGCA TGCA TGCA TGCA TGCA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
83654 TGCA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
83702 TGTA T
1 TGTA T
83707 TGGAAGGAGA
Statistics
Matches: 3584, Mismatches: 61, Indels: 78
0.96 0.02 0.02
Matches are distributed among these distances:
2 6 0.00
3 19 0.01
4 3537 0.99
5 16 0.00
6 6 0.00
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (4 bp):
TGTA
Found at i:84731 original size:2 final size:2
Alignment explanation
Indices: 84719--84777 Score: 109
Period size: 2 Copynumber: 29.5 Consensus size: 2
84709 AGCTTTATTT
*
84719 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
84761 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
84778 TCTAGGTATA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:88489 original size:3 final size:3
Alignment explanation
Indices: 88475--88512 Score: 51
Period size: 3 Copynumber: 12.3 Consensus size: 3
88465 TATGTAAGAA
88475 AAT AATT AAT AAT AAT AAT AAT AA- AAT AAAT AAT AAT A
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT A
88513 TTATTAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 2 0.06
3 24 0.75
4 6 0.19
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:94791 original size:86 final size:86
Alignment explanation
Indices: 94626--94791 Score: 197
Period size: 86 Copynumber: 1.9 Consensus size: 86
94616 CATATCGGAT
* ** **
94626 CGTACTAAAAGATACCTAGTGCGAGTCAGTACTAAAGGATACCTAGTGCTGATGGTGGGAACAAC
1 CGTACTAAAAGATACCTAGTGCGAGTCAGTACTAAAGAATACCTAGTGCTGATGACGAAAACAAC
* *
94691 CTTATGTGTCATATTCGAGAC
66 CTCACGTGTCATATTCGAGAC
* * * * **
94712 CGTACTAAATGATATCTAGTGCGGGTTAGTACTAAAGAATACCTAGTGCTGATGACGAAAATGAC
1 CGTACTAAAAGATACCTAGTGCGAGTCAGTACTAAAGAATACCTAGTGCTGATGACGAAAACAAC
* *
94777 CTCCCGTGTTATATT
66 CTCACGTGTCATATT
94792 GGTTTAGCAT
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
86 65 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (86 bp):
CGTACTAAAAGATACCTAGTGCGAGTCAGTACTAAAGAATACCTAGTGCTGATGACGAAAACAAC
CTCACGTGTCATATTCGAGAC
Found at i:100133 original size:43 final size:43
Alignment explanation
Indices: 100085--100170 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
100075 CTAGAGATAG
*
100085 AACATACATTGAGAACCCCAGCATACAACTTGATTAGGGAGCA
1 AACATACATTGAGAACCCCAGCATACAACTTGATTAGAGAGCA
* *
100128 AACATACATTGAGAATCCCGGCATACAACTTGATTAGAGAGCA
1 AACATACATTGAGAACCCCAGCATACAACTTGATTAGAGAGCA
100171 CAAAGTGCCA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.20
Consensus pattern (43 bp):
AACATACATTGAGAACCCCAGCATACAACTTGATTAGAGAGCA
Found at i:106670 original size:2 final size:2
Alignment explanation
Indices: 106665--106692 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
106655 TTTTTAACAT
106665 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
106693 GCATCCCTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:106898 original size:81 final size:81
Alignment explanation
Indices: 106776--106981 Score: 229
Period size: 81 Copynumber: 2.5 Consensus size: 81
106766 TATTTAGCTT
* * * *
106776 TTCATTTAACTTA-CATATTTGACAC-TTTCCTGTAAAATGCACAGCTAATCCATTATTCTTTTA
1 TTCATTTAAC-TAGCATAATTGACACATTT-CTGTCAATTGCACAGCTAAGCCATTATTCTTTTA
* * *
106839 TTCAATAGTGTTTAACCG
64 CTCAACAGTATTTAACCG
* * * *
106857 TTCATCTAACTAGCATAATTGACACATTTCTGTCAATTGCACAGTTAGGCCTTTATTCTTTTACT
1 TTCATTTAACTAGCATAATTGACACATTTCTGTCAATTGCACAGCTAAGCCATTATTCTTTTACT
*
106922 CAACGGTATTTAACCG
66 CAACAGTATTTAACCG
* * *
106938 TTCATTTAACT-GACATAAATGACACATTTCTGCCATTTGCACAG
1 TTCATTTAACTAG-CATAATTGACACATTTCTGTCAATTGCACAG
106982 TTAGGCCTCA
Statistics
Matches: 106, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
80 3 0.03
81 100 0.94
82 3 0.03
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (81 bp):
TTCATTTAACTAGCATAATTGACACATTTCTGTCAATTGCACAGCTAAGCCATTATTCTTTTACT
CAACAGTATTTAACCG
Found at i:106982 original size:81 final size:81
Alignment explanation
Indices: 106828--106989 Score: 236
Period size: 81 Copynumber: 2.0 Consensus size: 81
106818 AGCTAATCCA
* * * * *
106828 TTATTCTTTTATTCAATAGTGTTTAACCGTTCATCTAACTAGCATAATTGACACATTTCTGTCAA
1 TTATTCTTTTACTCAACAGTATTTAACCGTTCATCTAACTAGCATAAATGACACATTTCTGCCAA
106893 TTGCACAGTTAGGCCT
66 TTGCACAGTTAGGCCT
* *
106909 TTATTCTTTTACTCAACGGTATTTAACCGTTCATTTAACT-GACATAAATGACACATTTCTGCCA
1 TTATTCTTTTACTCAACAGTATTTAACCGTTCATCTAACTAG-CATAAATGACACATTTCTGCCA
*
106973 TTTGCACAGTTAGGCCT
65 ATTGCACAGTTAGGCCT
106990 CAAAATAGAG
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 71 0.99
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.40
Consensus pattern (81 bp):
TTATTCTTTTACTCAACAGTATTTAACCGTTCATCTAACTAGCATAAATGACACATTTCTGCCAA
TTGCACAGTTAGGCCT
Found at i:109501 original size:33 final size:33
Alignment explanation
Indices: 109458--109534 Score: 113
Period size: 33 Copynumber: 2.4 Consensus size: 33
109448 TTAAACTTTG
* *
109458 TTTC-ATTTATCGAACTTGGAAGTTTTTAAGTA
1 TTTCAATTTATCGAACTTGGAAGTATTTAAATA
*
109490 TTTGAATTTATCGAACTTGGAAGTATTTAAATA
1 TTTCAATTTATCGAACTTGGAAGTATTTAAATA
109523 TTTCAA-TTATCG
1 TTTCAATTTATCG
109535 TAAACTTTGG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 9 0.22
33 31 0.77
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.45
Consensus pattern (33 bp):
TTTCAATTTATCGAACTTGGAAGTATTTAAATA
Found at i:109863 original size:68 final size:68
Alignment explanation
Indices: 109754--110096 Score: 530
Period size: 68 Copynumber: 5.0 Consensus size: 68
109744 TGCATGTCTA
* * *
109754 CCTCAAAAGCACTTAGCCTTTCATCTATCTGGCATAAATGACATC-TTTCTGTCAAATCCACA-T
1 CCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAAATGACA-CATTTCTGTCAAATGCACAGT
109817 ATAGG
65 -TAGG
*
109822 CCTCAAAGGCACTTAGCCTTTCATCTAAGC-GGCATAAATGACACCTTTCTGTCAAATGCACAGT
1 CCTCAAAGGCACTTAGCCTTTCATCTAA-CTGGCATAAATGACACATTTCTGTCAAATGCACAGT
109886 TAGG
65 TAGG
***
109890 CCTCAAAGGCACTTAGCCTTTCATCTAACCAACATAAATGACACATTTCTGTCAAATGCACAGTT
1 CCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAAATGACACATTTCTGTCAAATGCACAGTT
109955 AGG
66 AGG
* * *
109958 CTTTAAAGGCACTTAACCTTTCATCTAACTGGCATAAATGACACATTTCTGTCAAATGCACAGTT
1 CCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAAATGACACATTTCTGTCAAATGCACAGTT
110023 AGG
66 AGG
* *
110026 CCTCAAAGGCACTTAACCTTTCATCTAACTGGCATAAATGACACATTTCTATCAAATGCACAGTT
1 CCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAAATGACACATTTCTGTCAAATGCACAGTT
110091 AGG
66 AGG
110094 CCT
1 CCT
110097 TAAATATTTT
Statistics
Matches: 256, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
67 2 0.01
68 252 0.98
69 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.29
Consensus pattern (68 bp):
CCTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAAATGACACATTTCTGTCAAATGCACAGTT
AGG
Found at i:110518 original size:59 final size:59
Alignment explanation
Indices: 110443--111212 Score: 1119
Period size: 59 Copynumber: 13.1 Consensus size: 59
110433 ATATATATTT
* * * * * * *
110443 CCTATACGAAAATTCATACACTTAGGATGAATTTCTTATCATTTTAGCACAC-ATGGTAC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGA-AGTGC
* * * * * *
110502 CCCATTTGAAAATTCATACACTTAGTATGAATTCCTTCCCATGTTAGCACACGAATTGC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
* * *
110561 CCTATATGGAAATTCACACACTTAGTATGAATTCCTTCCCATGTTAGCACACGAAGTGC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
* * *
110620 CCTATATGAAAATTCATACACTTAGTATGAATTCCTTCCCATGTTAGCACACGAAGTGC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
* * * *
110679 CCTATATGGAAATTCACACACTTAGTATGAATTCCTTCTCATGGTAGCACAAGAAGTGC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
*
110738 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCAAACGAAGTGC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
* *
110797 CCTATATGGAAATTCCTACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
* ** *
110856 CCTATATAGAAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACACGAAGTGC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
*
110915 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAACACACGAAGTGC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
* *
110974 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCGTGTTAGTACACGAAGTGC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
** *
111033 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACACGAAGTGC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
* * **
111092 TCTATATGGAAATTCATACACTTAGTATGAATTTCTTTTCATGTTAGCACACGACTTGC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
* * ** *
111151 CCTATATGGAAATCCATACACTTAGTATGAATTTATTAACATTTTAGCACACGAAGTGC
1 CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
111210 CCT
1 CCT
111213 TTTTGTAATT
Statistics
Matches: 646, Mismatches: 64, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
59 645 1.00
60 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (59 bp):
CCTATATGGAAATTCATACACTTAGTATGAATTTCTTCTCATGTTAGCACACGAAGTGC
Found at i:122061 original size:95 final size:94
Alignment explanation
Indices: 121962--122146 Score: 257
Period size: 94 Copynumber: 2.0 Consensus size: 94
121952 ACTTTTATGC
** * *
121962 TATGGTACCGATACCCCCTTTTGGTATCGATA-CAAATTTTAGGTTCGATG-TTGCATGGTATCG
1 TATGGTACCGATA-CCCCTTCCGGTATCGATACCAAA-TTTAGATTCGATGATT-CATGCTATCG
* *
122025 ATACCCTTACCATGGTATGGATACTACCATGT
63 ATACCCTTACCATGGTATCGAAACTACCATGT
* *
122057 TATGGTATCGATACCCCTTCCGGTATCGATACCAAATTTAGATTCGATGATTCTTGCTATCGATA
1 TATGGTACCGATACCCCTTCCGGTATCGATACCAAATTTAGATTCGATGATTCATGCTATCGATA
122122 CCCTTACCATGGTATCGAAACTACC
66 CCCTTACCATGGTATCGAAACTACC
122147 TCTTCGGTAT
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
94 62 0.77
95 18 0.22
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (94 bp):
TATGGTACCGATACCCCTTCCGGTATCGATACCAAATTTAGATTCGATGATTCATGCTATCGATA
CCCTTACCATGGTATCGAAACTACCATGT
Found at i:123729 original size:91 final size:93
Alignment explanation
Indices: 123628--123811 Score: 230
Period size: 94 Copynumber: 2.0 Consensus size: 93
123618 TAATAATTTG
* * * *
123628 CAAATAAATTTTGGTTCGTTTAACGGTTAAGGAAAAATAAT-TT-ATTTTATTCGGTTAATAATT
1 CAAATAAATTTCGGTTCGATTAACGGTTAAAGAAAAA-AATGTTGATTTGATTCGGTTAATAATT
123691 TTCAAATAAATTTCGATACGATTAACGAT
65 TTCAAATAAATTTCGATACGATTAACGAT
* *
123720 CAAAT-AATTTCGGTTCGATTAATGGTTAAAGAAAAAAATCGGTTGATTTGGTTCGGTTAATAAT
1 CAAATAAATTTCGGTTCGATTAACGGTTAAAGAAAAAAAT--GTTGATTTGATTCGGTTAATAAT
* * * *
123784 TTTCAAATATATTTTGGTTCGATTAACG
64 TTTCAAATAAATTTCGATACGATTAACG
123812 GTTAAAGAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
90 3 0.04
91 27 0.35
92 5 0.06
93 2 0.03
94 41 0.53
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (93 bp):
CAAATAAATTTCGGTTCGATTAACGGTTAAAGAAAAAAATGTTGATTTGATTCGGTTAATAATTT
TCAAATAAATTTCGATACGATTAACGAT
Found at i:123808 original size:68 final size:64
Alignment explanation
Indices: 123719--123878 Score: 214
Period size: 65 Copynumber: 2.4 Consensus size: 64
123709 CGATTAACGA
*
123719 TCAAATAATTTCGGTTCGATTAATGGTTAAAGAAAAA-AATCGGTTGATTTGGTTCGGTTAATAA
1 TCAAATAATTTCGGTTCGATTAATGGTTAAAGAAAAATAA----TTGATTTGATTCGGTTAATAA
123783 TTT
62 TTT
* * *
123786 TCAAATATATTTTGGTTCGATTAACGGTTAAAGAAAAATAATTGATTTTATTCGGTTAATAATTT
1 TCAAATA-ATTTCGGTTCGATTAATGGTTAAAGAAAAATAATTGATTTGATTCGGTTAATAATTT
*
123851 TCAAATAAATTTGGGTTCGATTAATGGT
1 TCAAAT-AATTTCGGTTCGATTAATGGT
123879 CAAATAATTT
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
65 46 0.55
66 1 0.01
67 7 0.08
68 28 0.33
69 2 0.02
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (64 bp):
TCAAATAATTTCGGTTCGATTAATGGTTAAAGAAAAATAATTGATTTGATTCGGTTAATAATTT
Found at i:123828 original size:159 final size:159
Alignment explanation
Indices: 123561--124251 Score: 1060
Period size: 159 Copynumber: 4.3 Consensus size: 159
123551 TTATTTGTTT
* * * * * *
123561 AAATAAATTTCGGTTCGATTAATGGTTAAAGAAAAAATTTGGTTAATTCGATTCAGTTAATAATT
1 AAAT-AATTTCGGTTCGATTAATGGTTAAAGAAAAAAATCGGTTGATTTGGTTCGGTTAATAATT
* * *
123626 TGCAAATAAATTTTGGTTCGTTTAACGGTTAAGGAAAAATAATTTATTTTATTCGGTTAATAATT
65 TTCAAATAAATTTTGGTTCGATTAACGGTTAAAGAAAAATAATTTATTTTATTCGGTTAATAATT
* * * *
123691 TTCAAATAAATTTCGATACGATTAACGATC
130 TTCAAATAAATTTGGGTTCGATTAACGGTC
123721 AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAATCGGTTGATTTGGTTCGGTTAATAATTT
1 AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAATCGGTTGATTTGGTTCGGTTAATAATTT
* *
123786 TCAAATATATTTTGGTTCGATTAACGGTTAAAGAAAAATAATTGATTTTATTCGGTTAATAATTT
66 TCAAATAAATTTTGGTTCGATTAACGGTTAAAGAAAAATAATTTATTTTATTCGGTTAATAATTT
*
123851 TCAAATAAATTTGGGTTCGATTAATGGTC
131 TCAAATAAATTTGGGTTCGATTAACGGTC
*
123880 AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAATCGGTTGATTTGGTTCGGTTAAAAATTT
1 AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAATCGGTTGATTTGGTTCGGTTAATAATTT
*
123945 TCAAATAAATTTCT-GTTCGATTAACGGTTAAAGAAAATTAATTTATTTTATTCGGTTAATTCGG
66 TCAAATAAATTT-TGGTTCGATTAACGGTTAAAG-AAA--AA--TAATTTATT---TT-ATTCGG
124009 TTAATAATTTTCAAATAAATTTGGGTTCGATTAACGGTC
121 TTAATAATTTTCAAATAAATTTGGGTTCGATTAACGGTC
124048 AAATAATTTCGGTTCGATTAATGGTTAAAGAGAAAAAATCGGTTGATTTGGTTCGGTTAATAATT
1 AAATAATTTCGGTTCGATTAATGGTTAAAGA-AAAAAATCGGTTGATTTGGTTCGGTTAATAATT
**
124113 TTCAAATAAATTTTGGTTTAATTAACGGTTAAAGAAAAATAATTTATTTTATTCGGTTAATAATT
65 TTCAAATAAATTTTGGTTCGATTAACGGTTAAAGAAAAATAATTTATTTTATTCGGTTAATAATT
*
124178 TTCAAATAAATTTGGGTTCGTTTAACGGTC
130 TTCAAATAAATTTGGGTTCGATTAACGGTC
*
124208 AAATAATTTTGGTTCGATTAATGGTTAAAGAAAAAAATTCGGTT
1 AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAA-TCGGTT
124252 AATAATTTTC
Statistics
Matches: 491, Mismatches: 27, Indels: 26
0.90 0.05 0.05
Matches are distributed among these distances:
159 239 0.49
160 88 0.18
161 2 0.00
162 2 0.00
164 15 0.03
166 2 0.00
167 2 0.00
168 79 0.16
169 62 0.13
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.40
Consensus pattern (159 bp):
AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAATCGGTTGATTTGGTTCGGTTAATAATTT
TCAAATAAATTTTGGTTCGATTAACGGTTAAAGAAAAATAATTTATTTTATTCGGTTAATAATTT
TCAAATAAATTTGGGTTCGATTAACGGTC
Found at i:123894 original size:26 final size:27
Alignment explanation
Indices: 123851--123904 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
123841 TTAATAATTT
*
123851 TCAAATAAATTTGGGTTCGATTAATGG
1 TCAAATAAATTTCGGTTCGATTAATGG
123878 TCAAAT-AATTTCGGTTCGATTAATGG
1 TCAAATAAATTTCGGTTCGATTAATGG
123904 T
1 T
123905 TAAAGAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
TCAAATAAATTTCGGTTCGATTAATGG
Found at i:123963 original size:94 final size:92
Alignment explanation
Indices: 123786--123968 Score: 253
Period size: 94 Copynumber: 2.0 Consensus size: 92
123776 TTAATAATTT
* * *
123786 TCAAATATATTTTGGTTCGATTAACGGTTAAAGAAAAATAATTGATTTTATTCGGTTAATAATTT
1 TCAAATATATTTCGGTTCGATTAACGGTTAAAGAAAAATAATTGATTTGATTCGGTTAAAAATTT
*
123851 TCAAATAAATTTGGGTTCGATTAATGG
66 TCAAATAAATTTCGGTTCGATTAATGG
* *
123878 TCAAATA-ATTTCGGTTCGATTAATGGTTAAAGAAAAA-AATCGGTTGATTTGGTTCGGTTAAAA
1 TCAAATATATTTCGGTTCGATTAACGGTTAAAGAAAAATAA----TTGATTTGATTCGGTTAAAA
*
123941 ATTTTCAAATAAATTTCTGTTCGATTAA
62 ATTTTCAAATAAATTTCGGTTCGATTAA
123969 CGGTTAAAGA
Statistics
Matches: 80, Mismatches: 7, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
90 2 0.03
91 28 0.35
92 7 0.09
94 43 0.54
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (92 bp):
TCAAATATATTTCGGTTCGATTAACGGTTAAAGAAAAATAATTGATTTGATTCGGTTAAAAATTT
TCAAATAAATTTCGGTTCGATTAATGG
Found at i:124164 original size:328 final size:318
Alignment explanation
Indices: 123561--124254 Score: 1066
Period size: 328 Copynumber: 2.1 Consensus size: 318
123551 TTATTTGTTT
* * *
123561 AAATAAATTTCGGTTCGATTAATGGTTAAAGAAAAAATTTGGTTAATTCGATTCAGTTAATAATT
1 AAAT-AATTTCGGTTCGATTAATGGTTAAAGAAAAAAATCGGTTAATTCGATTCAGTTAAAAATT
* *
123626 TGCAAATAAATTTTGGTTCGTTTAACGGTTAAGGAAAAATAATTTATTTTATTCGGTTAATAATT
65 TGCAAATAAATTTTGGTTCGATTAACGGTTAAGAAAAAATAATTTATTTTATTCGGTTAATAATT
123691 TTCAAATAAATTTCGATACGATTAACGATCAAATAATTTCGGTTCGATTAATGGTTAAAGAAAAA
130 TTCAAATAAATTTCGATACGATTAACGATCAAATAATTTCGGTTCGATTAATGGTTAAAGAAAAA
* *
123756 AATCGGTTGATTTGGTTCGGTTAATAATTTTCAAATATATTTTGGTTCGATTAACGGTTAAAGAA
195 AATCGGTTGATTTGGTTCGGTTAATAATTTTCAAATAAATTTTGGTTCAATTAACGGTTAAAGAA
*
123821 AAATAATTGATTTTATTCGGTTAATAATTTTCAAATAAATTTGGGTTCGATTAATGGTC
260 AAATAATTGATTTTATTCGGTTAATAATTTTCAAATAAATTTGGGTTCGATTAACGGTC
* * * *
123880 AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAATCGGTTGATTTGGTTCGGTTAAAAATTT
1 AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAATCGGTTAATTCGATTCAGTTAAAAATTT
* *
123945 TCAAATAAATTTCT-GTTCGATTAACGGTTAAAGAAAATTAATTTATTTTATTCGGTTAATTCGG
66 GCAAATAAATTT-TGGTTCGATTAACGGTT-AAGAAAA--AA--TAATTTATT---TT-ATTCGG
* * * *
124009 TTAATAATTTTCAAATAAATTTGGGTTCGATTAACGGTCAAATAATTTCGGTTCGATTAATGGTT
121 TTAATAATTTTCAAATAAATTTCGATACGATTAACGATCAAATAATTTCGGTTCGATTAATGGTT
*
124074 AAAGAGAAAAAATCGGTTGATTTGGTTCGGTTAATAATTTTCAAATAAATTTTGGTTTAATTAAC
186 AAAGA-AAAAAATCGGTTGATTTGGTTCGGTTAATAATTTTCAAATAAATTTTGGTTCAATTAAC
* *
124139 GGTTAAAGAAAAATAATTTATTTTATTCGGTTAATAATTTTCAAATAAATTTGGGTTCGTTTAAC
250 GGTTAAAGAAAAATAATTGATTTTATTCGGTTAATAATTTTCAAATAAATTTGGGTTCGATTAAC
124204 GGTC
315 GGTC
*
124208 AAATAATTTTGGTTCGATTAATGGTTAAAGAAAAAAATTCGGTTAAT
1 AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAA-TCGGTTAAT
124255 AATTTTCAAA
Statistics
Matches: 340, Mismatches: 23, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
318 79 0.23
319 11 0.03
321 2 0.01
323 8 0.02
326 2 0.01
327 72 0.21
328 158 0.46
329 8 0.02
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.40
Consensus pattern (318 bp):
AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAATCGGTTAATTCGATTCAGTTAAAAATTT
GCAAATAAATTTTGGTTCGATTAACGGTTAAGAAAAAATAATTTATTTTATTCGGTTAATAATTT
TCAAATAAATTTCGATACGATTAACGATCAAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAA
ATCGGTTGATTTGGTTCGGTTAATAATTTTCAAATAAATTTTGGTTCAATTAACGGTTAAAGAAA
AATAATTGATTTTATTCGGTTAATAATTTTCAAATAAATTTGGGTTCGATTAACGGTC
Found at i:124203 original size:65 final size:67
Alignment explanation
Indices: 124046--124206 Score: 195
Period size: 65 Copynumber: 2.4 Consensus size: 67
124036 CGATTAACGG
* *
124046 TCAAAT-AATTTCGGTTCGATTAATGGTTAAAGAGAAAAAATCGGTTGATTTGGTTCGGTTAATA
1 TCAAATAAATTTCGGTTCGATTAACGGTTAAAGAGAAAAAAT--GTTGATTTGATTCGGTTAATA
124110 ATTT
64 ATTT
* ** *
124114 TCAAATAAATTTTGGTTTAATTAACGGTTAAAGA-AAAATAAT-TT-ATTTTATTCGGTTAATAA
1 TCAAATAAATTTCGGTTCGATTAACGGTTAAAGAGAAAA-AATGTTGATTTGATTCGGTTAATAA
124176 TTT
65 TTT
* *
124179 TCAAATAAATTTGGGTTCGTTTAACGGT
1 TCAAATAAATTTCGGTTCGATTAACGGT
124207 CAAATAATTT
Statistics
Matches: 81, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
65 43 0.53
66 2 0.02
68 10 0.12
69 26 0.32
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (67 bp):
TCAAATAAATTTCGGTTCGATTAACGGTTAAAGAGAAAAAATGTTGATTTGATTCGGTTAATAAT
TT
Found at i:124257 original size:81 final size:80
Alignment explanation
Indices: 124163--124325 Score: 272
Period size: 81 Copynumber: 2.0 Consensus size: 80
124153 AATTTATTTT
* * *
124163 ATTCGGTTAATAATTTTCAAATAAATTTGGGTTCGTTTAACGGTCAAATAATTTTGGTTCGATTA
1 ATTCGGTTAATAATTTTCAAATAAATTTGGGTTCGATTAACGGCCAAATAATTTCGGTTCGATTA
124228 ATGGTTAAAGAAAAAA
66 AT-GTTAAAGAAAAAA
* *
124244 ATTCGGTTAATAATTTTCAAATAAATTTTGGTTCGATTAACGGCCAAATAATTTCGGTTTGATTA
1 ATTCGGTTAATAATTTTCAAATAAATTTGGGTTCGATTAACGGCCAAATAATTTCGGTTCGATTA
124309 ATGTTAAAGAAAAAA
66 ATGTTAAAGAAAAAA
124324 AT
1 AT
124326 CGATTGATTT
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
80 15 0.19
81 62 0.81
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (80 bp):
ATTCGGTTAATAATTTTCAAATAAATTTGGGTTCGATTAACGGCCAAATAATTTCGGTTCGATTA
ATGTTAAAGAAAAAA
Found at i:128642 original size:10 final size:10
Alignment explanation
Indices: 128629--128684 Score: 67
Period size: 10 Copynumber: 5.4 Consensus size: 10
128619 TTAAATAGTA
*
128629 TTATTATAGT
1 TTATTATATT
*
128639 TTATCATATT
1 TTATTATATT
128649 TTATTATTATT
1 TTATTA-TATT
128660 ATTATTATATT
1 -TTATTATATT
*
128671 TAATTATATT
1 TTATTATATT
128681 TTAT
1 TTAT
128685 AATTTCTAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
10 25 0.64
11 8 0.21
12 6 0.15
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (10 bp):
TTATTATATT
Found at i:128669 original size:22 final size:20
Alignment explanation
Indices: 128631--128684 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 20
128621 AAATAGTATT
* *
128631 ATTATAGTTTATCATATTTT
1 ATTATATTTTATCATATTTA
*
128651 ATTATTATTATTATTATATTTA
1 ATTA-TATT-TTATCATATTTA
128673 ATTATATTTTAT
1 ATTATATTTTAT
128685 AATTTCTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 8 0.28
21 7 0.24
22 14 0.48
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (20 bp):
ATTATATTTTATCATATTTA
Found at i:129326 original size:19 final size:20
Alignment explanation
Indices: 129302--129340 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
129292 AAGTTTTTTA
*
129302 ATTTTTAATT-TTAGAAAAT
1 ATTTTTAATTATTAAAAAAT
*
129321 ATTTTTTATTATTAAAAAAT
1 ATTTTTAATTATTAAAAAAT
129341 TTAAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
ATTTTTAATTATTAAAAAAT
Found at i:135579 original size:21 final size:21
Alignment explanation
Indices: 135554--135647 Score: 109
Period size: 21 Copynumber: 4.5 Consensus size: 21
135544 GTTTTCAGAT
*
135554 TCGCAATGCGATTTTGGACTA
1 TCGCAATGCGAATTTGGACTA
*
135575 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAATTTGGACTA
* * * *
135596 TCACAATGCGAATATGTA-AA
1 TCGCAATGCGAATTTGGACTA
*
135616 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAATTTGGACTA
*
135637 TCGCATTGCGA
1 TCGCAATGCGA
135648 TTTATATATT
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
20 15 0.25
21 44 0.75
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (21 bp):
TCGCAATGCGAATTTGGACTA
Found at i:136317 original size:12 final size:11
Alignment explanation
Indices: 136287--136320 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
136277 GCCTTCCGTC
136287 TCGGGTCG-GG
1 TCGGGTCGTGG
136297 TCGGGTCGTGG
1 TCGGGTCGTGG
136308 TCGTGGTCGTGG
1 TCG-GGTCGTGG
136320 T
1 T
136321 AATACGTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 5 0.23
12 9 0.41
ACGTcount: A:0.00, C:0.18, G:0.53, T:0.29
Consensus pattern (11 bp):
TCGGGTCGTGG
Found at i:136513 original size:20 final size:20
Alignment explanation
Indices: 136488--136560 Score: 87
Period size: 20 Copynumber: 3.6 Consensus size: 20
136478 TAGTCGACTA
136488 TCGCATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
*
136508 TCGCATTGCGATAGT-CGACTA-
1 TCGCATTGCGAT-TTAC-A-TAT
*
136529 TCACATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
136549 TCGCATTGCGAT
1 TCGCATTGCGAT
136561 AGTCGACTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
19 2 0.05
20 26 0.59
21 14 0.32
22 2 0.05
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Found at i:136518 original size:41 final size:41
Alignment explanation
Indices: 136466--136580 Score: 212
Period size: 41 Copynumber: 2.8 Consensus size: 41
136456 ATAGTCTAAG
136466 TTCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATA
1 TTCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATA
*
136507 TTCGCATTGCGATAGTCGACTATCACATTGCGATTTACATA
1 TTCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATA
*
136548 TTCGCATTGCGATAGTCGACTATCGCAATGCGA
1 TTCGCATTGCGATAGTCGACTATCGCATTGCGA
136581 ATCTGGAAAC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (41 bp):
TTCGCATTGCGATAGTCGACTATCGCATTGCGATTTACATA
Found at i:136579 original size:21 final size:21
Alignment explanation
Indices: 136445--136580 Score: 115
Period size: 21 Copynumber: 6.6 Consensus size: 21
136435 ACTATCGCAA
* * *
136445 ATCGCAATGCGATAGTCTAAGT
1 ATCGCATTGCGATAGTC-GACT
136467 -TCGCATTGCGATAGTCGACT
1 ATCGCATTGCGATAGTCGACT
*
136487 ATCGCATTGCGAT--T-TACAT
1 ATCGCATTGCGATAGTCGAC-T
136506 ATTCGCATTGCGATAGTCGACT
1 A-TCGCATTGCGATAGTCGACT
* *
136528 ATCACATTGCGAT--T-TACAT
1 ATCGCATTGCGATAGTCGAC-T
136547 ATTCGCATTGCGATAGTCGACT
1 A-TCGCATTGCGATAGTCGACT
*
136569 ATCGCAATGCGA
1 ATCGCATTGCGA
136581 ATCTGGAAAC
Statistics
Matches: 93, Mismatches: 10, Indels: 23
0.74 0.08 0.18
Matches are distributed among these distances:
18 4 0.04
19 6 0.06
20 25 0.27
21 48 0.52
22 6 0.06
23 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (21 bp):
ATCGCATTGCGATAGTCGACT
Found at i:137272 original size:14 final size:15
Alignment explanation
Indices: 137244--137272 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
137234 GGATGAAGGG
137244 AATAATCACTTTTTA
1 AATAATCACTTTTTA
137259 AATAATCA-TTTTTA
1 AATAATCACTTTTTA
137273 GTAATTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (15 bp):
AATAATCACTTTTTA
Found at i:144756 original size:20 final size:20
Alignment explanation
Indices: 144701--144756 Score: 51
Period size: 20 Copynumber: 2.7 Consensus size: 20
144691 TTTATATTCT
144701 TTTTGTATTGAATTTTATTCAG
1 TTTT-TATTG-ATTTTATTCAG
* **
144723 TTTTAATTCTTTTTATTGCA-
1 TTTTTATTGATTTTATT-CAG
144743 TTTTTATTGATTTT
1 TTTTTATTGATTTT
144757 TTAAAAAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
20 18 0.67
21 5 0.19
22 4 0.15
ACGTcount: A:0.20, C:0.05, G:0.09, T:0.66
Consensus pattern (20 bp):
TTTTTATTGATTTTATTCAG
Found at i:144959 original size:11 final size:10
Alignment explanation
Indices: 144913--144969 Score: 53
Period size: 10 Copynumber: 5.5 Consensus size: 10
144903 TAAAGTTGAC
144913 ATTTTTATTG
1 ATTTTTATTG
* *
144923 AATTTTATTC
1 ATTTTTATTG
*
144933 ACTTTTAATT-
1 A-TTTTTATTG
144943 ATTTTTTATTG
1 A-TTTTTATTG
144954 TATTTTTATTG
1 -ATTTTTATTG
144965 ATTTT
1 ATTTT
144970 AAAAAAATGA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
10 22 0.58
11 15 0.39
12 1 0.03
ACGTcount: A:0.23, C:0.04, G:0.05, T:0.68
Consensus pattern (10 bp):
ATTTTTATTG
Found at i:146395 original size:20 final size:20
Alignment explanation
Indices: 146370--146407 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
146360 TTTGGTTCAC
*
146370 GGAATATAAGATTACCAGTG
1 GGAATAAAAGATTACCAGTG
146390 GGAATAAAAGATTACCAG
1 GGAATAAAAGATTACCAG
146408 GGAATAGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.11, G:0.24, T:0.21
Consensus pattern (20 bp):
GGAATAAAAGATTACCAGTG
Found at i:146410 original size:18 final size:19
Alignment explanation
Indices: 146370--146413 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
146360 TTTGGTTCAC
*
146370 GGAATATAAGATTACCAGTG
1 GGAATAAAAGATTACCAG-G
146390 GGAATAAAAGATTACCA-G
1 GGAATAAAAGATTACCAGG
146408 GGAATA
1 GGAATA
146414 GGATTACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
20 16 0.70
ACGTcount: A:0.45, C:0.09, G:0.25, T:0.20
Consensus pattern (19 bp):
GGAATAAAAGATTACCAGG
Found at i:146640 original size:37 final size:36
Alignment explanation
Indices: 146571--146641 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 36
146561 GAAAAATATT
* *
146571 TATATATTTTCTTTAAAAATTTAAATTCATAAAATG
1 TATATATTTTCTTTAAAAATTGAAAATCATAAAATG
*
146607 TATATAATTTTTTTTACAAAATTGAAAAT-ATAAAA
1 TATAT-ATTTTCTTTA-AAAATTGAAAATCATAAAA
146642 AAGTTTAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
36 5 0.17
37 15 0.50
38 10 0.33
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (36 bp):
TATATATTTTCTTTAAAAATTGAAAATCATAAAATG
Found at i:147867 original size:22 final size:22
Alignment explanation
Indices: 147842--147895 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
147832 GGAAATTGTG
*
147842 GATCTGAACCCGACCTGCACCC
1 GATCTGAACCCGACCTGAACCC
*
147864 GATCTGAGA-ACGACCTGAACCC
1 GATCTGA-ACCCGACCTGAACCC
147886 GAAT-TGAACC
1 G-ATCTGAACC
147896 GAAAATATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
21 1 0.04
22 22 0.85
23 3 0.12
ACGTcount: A:0.30, C:0.35, G:0.20, T:0.15
Consensus pattern (22 bp):
GATCTGAACCCGACCTGAACCC
Found at i:148001 original size:16 final size:16
Alignment explanation
Indices: 147980--148016 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
147970 GGTATTACCC
*
147980 GACCTGTTTTCAACCT
1 GACCTGTTATCAACCT
*
147996 GACCTGTTATGAACCT
1 GACCTGTTATCAACCT
148012 GACCT
1 GACCT
148017 ATAATTGACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.32
Consensus pattern (16 bp):
GACCTGTTATCAACCT
Found at i:148093 original size:14 final size:15
Alignment explanation
Indices: 148074--148107 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
148064 TTATTCTGAC
148074 TTATAAGTAATA-AA
1 TTATAAGTAATATAA
*
148088 TTATAATTAATATAA
1 TTATAAGTAATATAA
148103 TTATA
1 TTATA
148108 TTATTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (15 bp):
TTATAAGTAATATAA
Found at i:148164 original size:19 final size:19
Alignment explanation
Indices: 148140--148185 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
148130 AAATTTAGAT
148140 TTTATATTAGTTAAAATTC
1 TTTATATTAGTTAAAATTC
** *
148159 TTTATATTTTTTACAATTC
1 TTTATATTAGTTAAAATTC
148178 -TTATATTA
1 TTTATATTA
148186 TAATTTGTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.59
Consensus pattern (19 bp):
TTTATATTAGTTAAAATTC
Found at i:148196 original size:14 final size:15
Alignment explanation
Indices: 148179--148207 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
148169 TTACAATTCT
148179 TATATTAT-AATTTG
1 TATATTATAAATTTG
148193 TATATTATAAATTTG
1 TATATTATAAATTTG
148208 ATTTTTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
TATATTATAAATTTG
Found at i:148341 original size:21 final size:21
Alignment explanation
Indices: 148326--148367 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
148316 ATAAATTGAG
*
148326 TTAAAATATTCATAAATCTAA
1 TTAAAATATTAATAAATCTAA
148347 TTAAAATATTAATAAATCTAA
1 TTAAAATATTAATAAATCTAA
148368 GCCAGAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (21 bp):
TTAAAATATTAATAAATCTAA
Found at i:149413 original size:116 final size:115
Alignment explanation
Indices: 149166--149407 Score: 441
Period size: 116 Copynumber: 2.1 Consensus size: 115
149156 TTCAACACCA
* *
149166 CATTGGTTAATTGCAGGTACCTGAATCGTATAATTTCAAAATGATGTCAACTCCACATTTGTTAA
1 CATTGGTTAATTGCAGGTACCTGAATCGTATAATTTCAAAATGATGTCAACACCACATTGGTTAA
*
149231 TTGCAAATACATATATATATATATATATACACACACACACATTTTCAAGCG
66 TTGCAAATACA-ATATATATATATATACACACACACACACATTTTCAAGCG
149282 CATTGGTTAATTGCAGGTACCTGAATCGTATAATTTCAAAATGATGTCAACACCACATTGGTTAA
1 CATTGGTTAATTGCAGGTACCTGAATCGTATAATTTCAAAATGATGTCAACACCACATTGGTTAA
149347 TTGCAAATAC-ATATATATATATATACACACACACACACATTTTCAAGCG
66 TTGCAAATACAATATATATATATATACACACACACACACATTTTCAAGCG
149396 CATTGGTTAATT
1 CATTGGTTAATT
149408 TTGCAGATAA
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
114 50 0.41
116 73 0.59
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (115 bp):
CATTGGTTAATTGCAGGTACCTGAATCGTATAATTTCAAAATGATGTCAACACCACATTGGTTAA
TTGCAAATACAATATATATATATATACACACACACACACATTTTCAAGCG
Found at i:151536 original size:6 final size:6
Alignment explanation
Indices: 151499--151598 Score: 67
Period size: 6 Copynumber: 17.3 Consensus size: 6
151489 ACTATTTATA
151499 ATTAAT ATTAAAAT AATTATAT ATT-AT AATTAAT ATTAAT A-T-A- ATTAAT
1 ATTAAT ATT--AAT -ATTA-AT ATTAAT -ATTAAT ATTAAT ATTAAT ATTAAT
*
151548 ATTAAT ATTAA- ATT-AT ATTAAT A-TAAT A-TAAT -TT-GT AATTAAT
1 ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT -ATTAAT
151591 ATTAAT AT
1 ATTAAT AT
151599 AAAATATAGT
Statistics
Matches: 77, Mismatches: 2, Indels: 30
0.71 0.02 0.28
Matches are distributed among these distances:
3 1 0.01
4 4 0.05
5 20 0.26
6 37 0.48
7 7 0.09
8 5 0.06
9 3 0.04
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (6 bp):
ATTAAT
Found at i:151544 original size:43 final size:36
Alignment explanation
Indices: 151521--151595 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 36
151511 ATAATTATAT
151521 ATTATAATTAATATTAATATAATTAATATTAATATTAA
1 ATTAT-ATTAATA-TAATATAATTAATATTAATATTAA
**
151559 ATTATATTAATATAATATAATTTGTAATTAATATTAA
1 ATTATATTAATATAATATAATTAAT-ATTAATATTAA
151596 TATAAAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
36 11 0.32
37 18 0.53
38 5 0.15
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (36 bp):
ATTATATTAATATAATATAATTAATATTAATATTAA
Found at i:151624 original size:58 final size:59
Alignment explanation
Indices: 151498--151645 Score: 162
Period size: 58 Copynumber: 2.5 Consensus size: 59
151488 AACTATTTAT
*
151498 AATTAATATTAAAATAATTATATATTATAATTAATATTAATATAATTAATATTAATATTA
1 AATTAATATTAATATAATTATATATTATAATTAATATTAATATAA-TAATATTAATATTA
* * *
151558 AATT-ATATTAATATAA-TATA-ATTTGTAATTAATATTAATATAA-AATA-TAGTCTATA
1 AATTAATATTAATATAATTATATA-TTATAATTAATATTAATATAATAATATTAATAT-TA
* *
151614 AAGTTAATATTAATATAAACTATATGTTATAA
1 AA-TTAATATTAATAT-AATTATATATTATAA
151646 ATTATATAGT
Statistics
Matches: 75, Mismatches: 6, Indels: 14
0.79 0.06 0.15
Matches are distributed among these distances:
55 4 0.05
56 8 0.11
57 3 0.04
58 34 0.45
59 13 0.17
60 13 0.17
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (59 bp):
AATTAATATTAATATAATTATATATTATAATTAATATTAATATAATAATATTAATATTA
Found at i:151664 original size:14 final size:14
Alignment explanation
Indices: 151647--151708 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
151637 ATGTTATAAA
151647 TTATATAGTATAGT
1 TTATATAGTATAGT
* *
151661 TTATAAACTATAGT
1 TTATATAGTATAGT
* *
151675 TAATATAATTAATA-T
1 TTATAT-AGT-ATAGT
*
151690 TGATATAGTATAGT
1 TTATATAGTATAGT
151704 TTATA
1 TTATA
151709 AAAAATATAC
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
13 3 0.08
14 23 0.62
15 8 0.22
16 3 0.08
ACGTcount: A:0.42, C:0.02, G:0.10, T:0.47
Consensus pattern (14 bp):
TTATATAGTATAGT
Found at i:151760 original size:31 final size:31
Alignment explanation
Indices: 151495--151768 Score: 166
Period size: 31 Copynumber: 8.8 Consensus size: 31
151485 ATAAACTATT
* * *
151495 TATAATTAATATTAAAAT-AATTATA--TAT
1 TATAATTAATATTAATATAAACTATAGTTAA
*
151523 TATAATTAATATTAATAT-AATTAATA-TTAA
1 TATAATTAATATTAATATAAACT-ATAGTTAA
*
151553 TATTAAATT-ATATTAATAT-AA-TATAATT--
1 TA-T-AATTAATATTAATATAAACTATAGTTAA
* *
151581 TGTAATTAATATTAATATAAAATATAGTCT-A
1 TATAATTAATATTAATATAAACTATAGT-TAA
151612 TA-AAGTTAATATTAATATAAACTATATGTT-A
1 TATAA-TTAATATTAATATAAACTATA-GTTAA
*
151643 TA-AATTATATAGTATAGTTTATAAACTATAGTTAA
1 TATAATTA-ATA-T-TA--ATATAAACTATAGTTAA
* *
151678 TATAATTAATATTGATAT--AGTATAGTTTATA
1 TATAATTAATATTAATATAAACTATAG-TTA-A
* * *
151709 AAAAATATACTATATTAATATAAATTATAGTTAA
1 TATAAT-TA--ATATTAATATAAACTATAGTTAA
*
151743 TATAATTAACATTAATATAAACTATA
1 TATAATTAATATTAATATAAACTATA
151769 TAATACATTA
Statistics
Matches: 202, Mismatches: 18, Indels: 49
0.75 0.07 0.18
Matches are distributed among these distances:
26 4 0.02
27 11 0.05
28 24 0.12
29 17 0.08
30 16 0.08
31 67 0.33
32 9 0.04
33 5 0.02
34 18 0.09
35 20 0.10
36 11 0.05
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (31 bp):
TATAATTAATATTAATATAAACTATAGTTAA
Found at i:151776 original size:22 final size:22
Alignment explanation
Indices: 151742--151812 Score: 124
Period size: 22 Copynumber: 3.1 Consensus size: 22
151732 ATTATAGTTA
151742 ATATAATTAACATTAATATAAACT
1 ATATAA-T-ACATTAATATAAACT
151766 ATATAATACATTAATATAAACT
1 ATATAATACATTAATATAAACT
151788 ATATAATACATTAATATAAACT
1 ATATAATACATTAATATAAACT
151810 ATA
1 ATA
151813 GTTTATAAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
22 40 0.85
23 1 0.02
24 6 0.13
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (22 bp):
ATATAATACATTAATATAAACT
Found at i:151831 original size:21 final size:21
Alignment explanation
Indices: 151802--151851 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
151792 AATACATTAA
* *
151802 TATAAACTATAGTTTATAAAT
1 TATAAACTATAGGTTATAAAG
*
151823 TATATACTATAGGTTATAAAG
1 TATAAACTATAGGTTATAAAG
151844 TATAAACT
1 TATAAACT
151852 CTATAGTACA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (21 bp):
TATAAACTATAGGTTATAAAG
Found at i:151885 original size:14 final size:15
Alignment explanation
Indices: 151866--151894 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
151856 AGTACACTAA
151866 TATAAACTAT-TGTT
1 TATAAACTATATGTT
151880 TATAAACTATATGTT
1 TATAAACTATATGTT
151895 ACGTATATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (15 bp):
TATAAACTATATGTT
Found at i:152076 original size:21 final size:21
Alignment explanation
Indices: 152062--152102 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
152052 TAGGGATTAG
152062 GGTTTAGGATTTAGGATTTAC
1 GGTTTAGGATTTAGGATTTAC
*
152083 GGTTTA-GAGTTTAAGATTTA
1 GGTTTAGGA-TTTAGGATTTA
152103 GTGTTTATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (21 bp):
GGTTTAGGATTTAGGATTTAC
Found at i:152108 original size:21 final size:20
Alignment explanation
Indices: 152062--152109 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
152052 TAGGGATTAG
*
152062 GGTTTAGGATTTAGGATTTA
1 GGTTTAGGATTTAAGATTTA
152082 CGGTTTA-GAGTTTAAGATTTA
1 -GGTTTAGGA-TTTAAGATTTA
152103 GTGTTTA
1 G-GTTTA
152110 TTGTTTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.46
Consensus pattern (20 bp):
GGTTTAGGATTTAAGATTTA
Found at i:152293 original size:17 final size:15
Alignment explanation
Indices: 152264--152299 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
152254 CTATATATTT
152264 TATATAGTTTATAAA
1 TATATAGTTTATAAA
*
152279 TATATAGTTTATATA
1 TATATAGTTTATAAA
152294 TATATA
1 TATATA
152300 TATATATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (15 bp):
TATATAGTTTATAAA
Found at i:152320 original size:69 final size:69
Alignment explanation
Indices: 152241--152467 Score: 178
Period size: 76 Copynumber: 3.1 Consensus size: 69
152231 TAATACAAAT
*
152241 TATAATTTATAAACTATATATTTTATATAGTTTATAAATATATAGTTTATATATATATATATATA
1 TATAAATTATAAACTATATATTTTATATAGTTTATAAATATATAGTTTATATATATATATATATA
152306 TTAA
66 TTAA
* **
152310 TATAAATTATATTCTATAAACTATATACTTTT-TATAGTTTATACATATATAGTTTAGCTATATA
1 TAT--A--A-A-T-TATAAACTATATA-TTTTATATAGTTTATAAATATATAGTTTATATATATA
*
152374 T-T-TCATATAAA
58 TATAT-ATATTAA
* * * *
152385 CAT-AA-TATATA-TATATATATATATATAGCTTATAATAATTATATAGTTTTATATATATATAT
1 TATAAATTATAAACTATATAT-TTTATATAG-TT-T-ATAAATATATAG-TTTATATATATATAT
*
152447 ATATAGTTTTA
61 ATATA--TTAA
152458 TATAAATTAT
1 TATAAATTAT
152468 TTTTAAATAA
Statistics
Matches: 122, Mismatches: 15, Indels: 36
0.71 0.09 0.21
Matches are distributed among these distances:
64 1 0.01
65 8 0.07
66 10 0.08
67 2 0.02
68 1 0.01
69 14 0.11
70 12 0.10
71 5 0.04
72 1 0.01
73 5 0.04
74 3 0.02
75 13 0.11
76 43 0.35
77 4 0.03
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (69 bp):
TATAAATTATAAACTATATATTTTATATAGTTTATAAATATATAGTTTATATATATATATATATA
TTAA
Found at i:152329 original size:76 final size:77
Alignment explanation
Indices: 152216--152374 Score: 234
Period size: 76 Copynumber: 2.1 Consensus size: 77
152206 TTATACATAC
152216 ATATATATACTACATTAATACAAATTATAATTTATAAACTATATA-TTTTATATAGTTTATAAAT
1 ATATATATACTACATTAATACAAATTATAATTTATAAACTATATACTTTT-TATAGTTTATAAAT
*
152280 ATATAGTTTATAT
65 ATATAGTTTAGAT
* * *
152293 ATATATATA-TATATTAATATAAATTAT-ATTCTATAAACTATATACTTTTTATAGTTTATACAT
1 ATATATATACTACATTAATACAAATTATAATT-TATAAACTATATACTTTTTATAGTTTATAAAT
*
152356 ATATAGTTTAGCT
65 ATATAGTTTAGAT
152369 ATATAT
1 ATATAT
152375 TTCATATAAA
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
75 3 0.04
76 59 0.79
77 13 0.17
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.48
Consensus pattern (77 bp):
ATATATATACTACATTAATACAAATTATAATTTATAAACTATATACTTTTTATAGTTTATAAATA
TATAGTTTAGAT
Found at i:152461 original size:2 final size:2
Alignment explanation
Indices: 152255--152451 Score: 65
Period size: 2 Copynumber: 100.0 Consensus size: 2
152245 ATTTATAAAC
* * * *
152255 TA TA TA T- TT TA TA TA GTT TA TA AA TA TA TA GTT TA TA TA TA TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA
* * *
152298 TA TA TA TA T- TA -A TA TA AA T- TA TA T- TC TA TA AA CTA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
* * * * * ** *
152337 CTT TT TA TA GTT TA TA CA TA TA TA GTT TA GC TA TA TA TT TCA TA
1 -TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA TA TA TA TA T-A TA
* * **
152381 TA AA CA TA -A TA TA TA TA TA TA TA TA TA TA TA GC T- TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
152420 TA -A T- TA TA TA GT- TT TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
152452 GTTTTATATA
Statistics
Matches: 143, Mismatches: 33, Indels: 38
0.67 0.15 0.18
Matches are distributed among these distances:
1 11 0.08
2 124 0.87
3 8 0.06
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (2 bp):
TA
Found at i:152555 original size:20 final size:20
Alignment explanation
Indices: 152522--152579 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
152512 ATTTAAGCTA
152522 TATATATA-TATATATAGTT
1 TATATATACTATATATAGTT
*
152541 TATATATACTATATATGGTT
1 TATATATACTATATATAGTT
*
152561 TATACATACATATTATATA
1 TATATATAC-TA-TATATA
152580 AAATTATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.24
20 18 0.55
21 2 0.06
22 5 0.15
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.48
Consensus pattern (20 bp):
TATATATACTATATATAGTT
Found at i:152762 original size:14 final size:14
Alignment explanation
Indices: 152743--152795 Score: 79
Period size: 14 Copynumber: 3.8 Consensus size: 14
152733 TTAGTTGCCT
*
152743 GTTTATGGTTTAAA
1 GTTTATGGTTTAAG
*
152757 GTTTATGGTTTATG
1 GTTTATGGTTTAAG
*
152771 GTTTATGATTTAAG
1 GTTTATGGTTTAAG
152785 GTTTATGGTTT
1 GTTTATGGTTT
152796 CTATAAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 34 1.00
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.55
Consensus pattern (14 bp):
GTTTATGGTTTAAG
Found at i:152767 original size:7 final size:7
Alignment explanation
Indices: 152743--152795 Score: 70
Period size: 7 Copynumber: 7.6 Consensus size: 7
152733 TTAGTTGCCT
152743 GTTTATG
1 GTTTATG
**
152750 GTTTAAA
1 GTTTATG
152757 GTTTATG
1 GTTTATG
152764 GTTTATG
1 GTTTATG
152771 GTTTATG
1 GTTTATG
* *
152778 ATTTAAG
1 GTTTATG
152785 GTTTATG
1 GTTTATG
152792 GTTT
1 GTTT
152796 CTATAAAATT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.55
Consensus pattern (7 bp):
GTTTATG
Found at i:152876 original size:2 final size:2
Alignment explanation
Indices: 152871--152911 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
152861 TAATTTTATT
*
152871 TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
152912 CATACATGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:153120 original size:24 final size:25
Alignment explanation
Indices: 153093--153144 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 25
153083 TAATATAAAT
* *
153093 TATAATTATAAAC-TATATATTTTA
1 TATAAGTATAAACATATATAGTTTA
*
153117 TAT-AGTATATACATATATAGTTTA
1 TATAAGTATAAACATATATAGTTTA
153141 TATA
1 TATA
153145 CATACATACA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (25 bp):
TATAAGTATAAACATATATAGTTTA
Found at i:153135 original size:15 final size:16
Alignment explanation
Indices: 153115--153148 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
153105 CTATATATTT
153115 TATATAG-TATATACA
1 TATATAGTTATATACA
153130 TATATAGTTTATATACA
1 TATATAG-TTATATACA
153147 TA
1 TA
153149 CATACATACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
17 10 0.59
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (16 bp):
TATATAGTTATATACA
Found at i:153151 original size:4 final size:4
Alignment explanation
Indices: 153142--153266 Score: 250
Period size: 4 Copynumber: 31.2 Consensus size: 4
153132 TATAGTTTAT
153142 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
153190 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
153238 ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
153267 CACGCACGCA
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 121 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:153274 original size:4 final size:4
Alignment explanation
Indices: 153267--153429 Score: 326
Period size: 4 Copynumber: 40.8 Consensus size: 4
153257 CATACATACA
153267 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
1 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
153315 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
1 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
153363 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
1 CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG CACG
153411 CACG CACG CACG CACG CAC
1 CACG CACG CACG CACG CAC
153430 ACATACATAC
Statistics
Matches: 159, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 159 1.00
ACGTcount: A:0.25, C:0.50, G:0.25, T:0.00
Consensus pattern (4 bp):
CACG
Found at i:153437 original size:4 final size:4
Alignment explanation
Indices: 153430--153462 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
153420 ACGCACGCAC
153430 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
153463 ATTTATATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:153521 original size:11 final size:11
Alignment explanation
Indices: 153488--153533 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
153478 TTATAATAAT
153488 TATATAGTTTA
1 TATATAGTTTA
153499 TA-ATA---TA
1 TATATAGTTTA
*
153506 AATATAGTTTA
1 TATATAGTTTA
153517 TATATAGTTTA
1 TATATAGTTTA
153528 TATATA
1 TATATA
153534 AACTTATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
7 3 0.10
8 3 0.10
10 3 0.10
11 20 0.69
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (11 bp):
TATATAGTTTA
Found at i:153529 original size:18 final size:18
Alignment explanation
Indices: 153489--153522 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
153479 TATAATAATT
153489 ATATAGTTTATAATATAA
1 ATATAGTTTATAATATAA
153507 ATATAGTTTAT-ATATA
1 ATATAGTTTATAATATA
153523 GTTTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (18 bp):
ATATAGTTTATAATATAA
Done.