genome.fa.s8643.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008643.1 Hibiscus syriacus cultivar Beakdansim tig00111619_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166505

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13678--13774	37	2.6	37	85	0	131	43	15	11	29	1.82
14138--14177	18	2.3	18	83	8	57	25	5	2	67	1.23
14273--14326	28	1.9	29	100	0	94	42	7	3	46	1.49
20189--20724	182	2.9	183	93	1	914	27	20	20	31	1.98
21298--21322	10	2.5	10	100	0	50	36	8	0	56	1.29
21891--22004	36	3.2	34	71	9	86	25	16	14	43	1.85
21875--22050	72	2.4	75	84	7	218	26	18	13	42	1.87
22121--22440	106	3.1	105	90	3	506	30	20	11	38	1.87
22340--22415	36	2.1	36	87	0	107	22	21	14	42	1.89
22615--23245	105	6.0	105	91	3	934	33	26	17	22	1.96
23785--23889	37	2.8	37	82	0	129	41	14	13	30	1.84
24246--24288	18	2.5	17	85	7	61	25	4	2	67	1.22
24245--24360	62	2.0	59	81	13	141	31	3	1	62	1.21
44843--44888	24	2.0	22	83	12	56	39	2	2	56	1.24
48095--48451	186	1.9	186	91	0	579	23	16	27	32	1.96
52109--52133	3	8.3	3	100	0	50	0	0	32	68	0.90
58490--58707	103	2.1	103	92	1	366	24	13	23	38	1.91
58724--58786	23	2.7	23	87	4	92	20	26	26	25	1.99
73461--73510	25	2.0	24	85	11	66	52	20	6	22	1.68
83779--83821	2	21.5	2	100	0	86	51	0	0	48	1.00
89144--89216	18	4.4	18	73	19	86	17	49	20	12	1.79
89145--89222	30	2.5	31	89	4	131	17	47	20	14	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89163--89222	13	4.3	13	71	22	50	18	46	20	15	1.84
91683--91789	24	4.5	24	68	9	76	20	15	15	47	1.82
95111--95145	16	2.2	16	94	0	61	42	22	5	28	1.76
102090--102133	17	2.6	17	96	0	79	29	31	4	34	1.78
104766--104792	2	13.5	2	100	0	54	48	0	0	51	1.00
115873--115919	15	3.1	15	84	3	58	65	2	0	31	1.04
121561--121587	2	13.5	2	100	0	54	51	0	0	48	1.00
135231--135287	21	2.7	21	91	0	96	21	36	19	22	1.95
135330--135423	20	4.7	20	84	7	118	18	28	22	30	1.97
136711--136758	19	2.5	20	82	3	62	52	6	12	29	1.63
137533--137604	26	2.8	26	93	0	117	41	8	11	38	1.71
137930--137969	21	1.9	21	89	0	62	32	12	7	47	1.69
138191--138269	21	3.7	21	86	1	104	21	35	18	24	1.96
138290--138364	21	3.6	21	87	1	98	22	26	24	26	2.00
138418--138473	21	2.7	21	88	0	85	32	26	19	21	1.97
139525--139583	18	3.2	19	76	7	68	40	1	3	54	1.27
139702--139741	16	2.5	16	87	0	62	27	22	25	25	2.00
139787--139855	29	2.4	29	97	0	129	42	13	7	37	1.71
142954--142981	2	14.0	2	100	0	56	50	0	0	50	1.00
148669--148718	26	1.9	26	83	0	64	48	2	4	46	1.32
152713--152873	29	5.7	29	94	2	229	50	16	3	29	1.63
159015--159198	28	6.6	29	83	8	213	50	14	2	33	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159012--159200	55	3.4	57	83	8	192	50	14	2	32	1.56
159012--159198	83	2.2	84	84	7	245	51	13	2	32	1.54
162448--162488	22	1.9	21	90	5	64	70	4	0	24	1.06
165969--166019	20	2.6	19	78	3	57	21	11	33	33	1.90

Tables:   1

The End!