Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008644.1 Hibiscus syriacus cultivar Beakdansim tig00111620_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139951

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9405--9461
21
2.7
21
91
0
96
21
36
19
22
1.95
9504--9597
20
4.7
20
84
7
118
18
28
22
30
1.97
10880--10927
19
2.5
20
82
3
62
52
6
12
29
1.63
11700--11771
26
2.8
26
93
0
117
41
8
11
38
1.71
12097--12136
21
1.9
21
89
0
62
32
12
7
47
1.69
12358--12436
21
3.7
21
86
1
104
21
35
18
24
1.96
12457--12531
21
3.6
21
87
1
98
22
26
24
26
2.00
12585--12640
21
2.7
21
88
0
85
32
26
19
21
1.97
13691--13749
18
3.2
19
76
7
68
40
1
3
54
1.27
13812--13850
21
1.9
20
84
5
51
35
5
0
58
1.20
13871--13910
16
2.5
16
87
0
62
27
22
25
25
2.00
13956--14024
29
2.4
29
97
0
129
42
13
7
37
1.71
14251--14295
18
2.4
18
85
7
54
42
8
2
46
1.47
17130--17157
2
14.0
2
100
0
56
50
0
0
50
1.00
26915--27077
29
5.7
29
94
0
238
50
16
3
29
1.62
33245--33432
29
6.6
29
87
3
240
51
13
2
32
1.54
33242--33434
57
3.4
57
86
3
246
51
13
2
32
1.55
33242--33432
86
2.2
85
87
5
269
51
13
2
32
1.53
45138--45188
21
2.5
21
81
12
54
68
3
17
9
1.33
45147--45188
21
2.2
20
87
12
61
69
0
19
11
1.19
46511--46560
21
2.4
21
75
18
50
54
0
4
42
1.19
47021--47243
105
2.1
105
87
1
302
20
18
26
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47273--47560
64
4.4
64
92
3
486
20
18
26
35
1.95
47192--47560
132
2.9
128
88
5
565
20
18
25
35
1.95
47190--47560
196
1.9
189
90
4
582
20
18
25
36
1.95
48595--48631
15
2.5
15
84
16
51
0
16
2
81
0.81
55821--55853
9
3.9
9
84
15
52
33
9
21
36
1.85
59137--59178
20
2.3
19
84
15
61
66
0
21
11
1.23
60520--60569
21
2.4
21
75
18
50
54
0
4
42
1.19
65656--65725
32
2.2
32
97
2
133
37
11
5
45
1.64
69109--69195
41
2.1
41
82
4
102
32
18
17
32
1.94
68959--69212
84
3.0
84
67
15
218
32
19
17
30
1.95
68951--69295
166
2.1
166
87
1
487
32
19
18
30
1.95
68998--69264
82
3.2
82
68
15
206
33
19
17
29
1.95
69217--69353
41
3.3
41
78
8
127
35
18
16
29
1.94
70553--70582
2
15.0
2
100
0
60
50
0
0
50
1.00
71438--71471
16
2.1
16
94
0
59
79
14
0
5
0.91
71849--71900
22
2.4
21
84
9
68
48
7
0
44
1.31
71849--71900
23
2.3
23
87
9
72
48
7
0
44
1.31
74507--74535
2
14.5
2
100
0
58
48
0
0
51
1.00
77410--77459
24
2.1
24
84
0
64
18
4
14
64
1.44
102562--102596
3
11.7
3
93
0
61
68
2
0
28
1.04
112978--113019
21
2.0
21
85
0
57
23
21
19
35
1.96
115786--115839
23
2.2
25
83
9
67
66
9
14
9
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
126650--126674
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!