Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008645.1 Hibiscus syriacus cultivar Beakdansim tig00111621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4138222
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 18 of 22
Found at i:3315150 original size:20 final size:21
Alignment explanation
Indices: 3315127--3315211 Score: 104
Period size: 20 Copynumber: 4.2 Consensus size: 21
3315117 TTGAATTCTG
*
3315127 AAAAATGAATTATATTT-TAA
1 AAAAATGAATTACATTTCTAA
**
3315147 AAAAATGAATTACATTT-TTT
1 AAAAATGAATTACATTTCTAA
* *
3315167 GAAAATGAATTACATTTCT-G
1 AAAAATGAATTACATTTCTAA
3315187 AAAAATGAATTACATTTCTAA
1 AAAAATGAATTACATTTCTAA
3315208 AAAA
1 AAAA
3315212 CATTTGGAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
20 51 0.91
21 5 0.09
ACGTcount: A:0.51, C:0.06, G:0.07, T:0.36
Consensus pattern (21 bp):
AAAAATGAATTACATTTCTAA
Found at i:3315191 original size:40 final size:40
Alignment explanation
Indices: 3315128--3315203 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
3315118 TGAATTCTGA
*
3315128 AAAATGAATTATATTTTAAAAAAATGAATTACATTTTTTG
1 AAAATGAATTACATTTTAAAAAAATGAATTACATTTTTTG
*
3315168 AAAATGAATTACATTTCT-GAAAAATGAATTACATTT
1 AAAATGAATTACATTT-TAAAAAAATGAATTACATTT
3315204 CTAAAAAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 32 0.97
41 1 0.03
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.39
Consensus pattern (40 bp):
AAAATGAATTACATTTTAAAAAAATGAATTACATTTTTTG
Found at i:3315580 original size:28 final size:28
Alignment explanation
Indices: 3315540--3315706 Score: 102
Period size: 28 Copynumber: 5.9 Consensus size: 28
3315530 CTTTACTAAA
3315540 ATATTATTTAAATATATAAATAATATTAT
1 ATATTA-TTAAATATATAAATAATATTAT
*
3315569 -TCATTATTAAATATATAAAAAATTTATTAT
1 AT-ATTATTAAATATATAAATAA--TATTAT
*
3315599 ATATTATTAAA-ATAAAAATATATATCT-T
1 ATATTATTAAATATATAAATA-ATAT-TAT
** * *
3315627 ATATTA-TATAATATAATTGATTATTTTAT
1 ATATTATTA-AATAT-ATAAATAATATTAT
*
3315656 ATAATATTAAA-A-AT--ATAATATTAT
1 ATATTATTAAATATATAAATAATATTAT
3315680 ATTATTA-TAAATATTAATAAA-AATATT
1 A-TATTATTAAATA-T-ATAAATAATATT
3315707 TTAAAATTTT
Statistics
Matches: 108, Mismatches: 12, Indels: 36
0.69 0.08 0.23
Matches are distributed among these distances:
24 13 0.12
25 5 0.05
26 2 0.02
27 2 0.02
28 32 0.30
29 31 0.29
30 22 0.20
31 1 0.01
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (28 bp):
ATATTATTAAATATATAAATAATATTAT
Found at i:3315680 original size:22 final size:23
Alignment explanation
Indices: 3315655--3315698 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
3315645 GATTATTTTA
3315655 TATAATATTAAAAATA-TAATAT
1 TATAATATTAAAAATATTAATAT
* *
3315677 TATATTATTATAAATATTAATA
1 TATAATATTAAAAATATTAATA
3315699 AAAATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TATAATATTAAAAATATTAATAT
Found at i:3315684 original size:34 final size:36
Alignment explanation
Indices: 3315632--3315705 Score: 89
Period size: 34 Copynumber: 2.1 Consensus size: 36
3315622 ATCTTATATT
* * *
3315632 ATATAATATAATTGATTATTTTATATAATATTAAAA
1 ATATAATATAATTGATTATTATAAATAATAATAAAA
* *
3315668 ATATAATATTA-T-ATTATTATAAATATTAATAAAA
1 ATATAATATAATTGATTATTATAAATAATAATAAAA
3315702 ATAT
1 ATAT
3315706 TTTAAAATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
34 22 0.67
35 1 0.03
36 10 0.30
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (36 bp):
ATATAATATAATTGATTATTATAAATAATAATAAAA
Found at i:3315713 original size:22 final size:23
Alignment explanation
Indices: 3315678--3315766 Score: 92
Period size: 22 Copynumber: 3.8 Consensus size: 23
3315668 ATATAATATT
3315678 ATATTATTATAAATATTAATAAAA
1 ATATT-TTATAAATATTAATAAAA
*
3315702 ATATTTTA-AAATTTTAATAAAA
1 ATATTTTATAAATATTAATAAAA
* *
3315724 ATATTTTGATGAAA-ATGATATTAAA
1 ATATTTT-AT-AAATATTA-ATAAAA
*
3315749 ATATTTTATTAATATTAA
1 ATATTTTATAAATATTAA
3315767 ATTCATAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
22 20 0.37
23 7 0.13
24 12 0.22
25 15 0.28
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (23 bp):
ATATTTTATAAATATTAATAAAA
Found at i:3315967 original size:42 final size:42
Alignment explanation
Indices: 3315908--3316020 Score: 142
Period size: 42 Copynumber: 2.7 Consensus size: 42
3315898 TACATTCCGG
* * *
3315908 AAAACGAATTACGTGAAACAAATACTG-GAAAATA-TTTTCTGT
1 AAAACGAATTACGTGAAACAAACAC-GAAAAAATATTTTTC-GA
3315950 AAAACGAATTACGTGAAACAAACACGAAAAAATATTTTTCGA
1 AAAACGAATTACGTGAAACAAACACGAAAAAATATTTTTCGA
* *
3315992 AAAACGAATTACATAAAACAAACAC-AAAA
1 AAAACGAATTACGTGAAACAAACACGAAAA
3316021 TTTCGTGAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
41 5 0.08
42 54 0.84
43 5 0.08
ACGTcount: A:0.54, C:0.14, G:0.11, T:0.21
Consensus pattern (42 bp):
AAAACGAATTACGTGAAACAAACACGAAAAAATATTTTTCGA
Found at i:3316541 original size:22 final size:22
Alignment explanation
Indices: 3316515--3316557 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
3316505 TAATAAATTA
3316515 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
3316537 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
3316558 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:3316566 original size:22 final size:22
Alignment explanation
Indices: 3316517--3316565 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
3316507 ATAAATTATT
**
3316517 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
3316539 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
3316562 TAAA
1 TAAA
3316566 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:3316569 original size:54 final size:55
Alignment explanation
Indices: 3316505--3317188 Score: 419
Period size: 54 Copynumber: 12.4 Consensus size: 55
3316495 ACAACTACAA
3316505 TAATAAATTATTTAAAATAAATCAATCCAT-ATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAATTTTAAAATAAATCAATCCATAC
* **
3316559 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAATCAATCCAT--AATTTTAA-AATAAATCAATCCATAC
** * * * *
3316616 TTTTAAA--A--T-AAATCAATCCATACAAATAAATGATTTAAAATAAATCAATCTATAC
1 TAATAAATTATTTAAAATAAATCAAT-C-CAT-AAT--TTTAAAATAAATCAATCCATAC
3316671 TAATAAATTATTTAAAATAAATCAATCCAT-ATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAATTTTAAAATAAATCAATCCATAC
* * **
3316725 TAATAAATTATTTAAAATAAATCAATACATACAACTACAATAATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAATCAATCCAT--AATTTTAA-AATAAATCAATCCATAC
** * * *
3316782 TTTTAAA--A--T-AAATCAATCAATACTAATAAATTTAAAATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAATCAAT-C-CATAATTTTAAAATAAATCAATCCATAC
** * * *
3316833 TTTTAAA--A--T-AAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAATCAAT-C-CAT-AA-T-TTTAAAATAAATCAATCCATAC
** * * *
3316887 TTTTAAA--A--T-AAATCAATCCATACCAATAAATTATTTAAAATTACAACTACAAT-AATA-
1 TAATAAATTATTTAAAATAAATCAAT-CC-AT-AA-T-TTTAAAA-TA-AA-T-CAATCCATAC
* * ** * ** * **
3316944 -AATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C
1 TAATAAAT---TA-TTTAAAATAAATCAATCCATAATTTTAAAATAAAT-CAATCCATAC
** * **
3317002 -AATCCA-TATTTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATAC
1 TAATAAATTA-TTTAAAATAAATCAATCCAT--AATTTTAA-AATAAATCAATCCATAC
3317059 TAATAAATTATTTAAAATAAATCAATCCAT-ATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAATTTTAAAATAAATCAATCCATAC
3317113 TAATAAATTATTTAAAATAAATCAATCCAT-ATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATAATTTTAAAATAAATCAATCCATAC
3317167 TAATAAATTATTTAAAATAAAT
1 TAATAAATTATTTAAAATAAAT
3317189 TATTTTAAAA
Statistics
Matches: 521, Mismatches: 64, Indels: 90
0.77 0.09 0.13
Matches are distributed among these distances:
51 42 0.08
52 28 0.05
53 5 0.01
54 273 0.52
55 16 0.03
56 16 0.03
57 33 0.06
58 70 0.13
59 6 0.01
60 14 0.03
61 2 0.00
62 1 0.00
63 2 0.00
64 3 0.01
65 10 0.02
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (55 bp):
TAATAAATTATTTAAAATAAATCAATCCATAATTTTAAAATAAATCAATCCATAC
Found at i:3316575 original size:32 final size:31
Alignment explanation
Indices: 3316537--3317188 Score: 356
Period size: 32 Copynumber: 23.4 Consensus size: 31
3316527 CAATCCATAT
3316537 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA
*
3316569 TTTAAAATAAATCAATCCATAC-AACTACA-A
1 TTTAAAATAAATCAATCCATACTAA-TAAATA
3316599 --T--AATAAATCAATCC--A-T-AT-----
1 TTTAAAATAAATCAATCCATACTAATAAATA
*
3316617 TTTAAAATAAATCAATCCATACAAATAAATGA
1 TTTAAAATAAATCAATCCATACTAATAAAT-A
*
3316649 TTTAAAATAAATCAATCTATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA
3316681 TTTAAAATAAATCAAT-C---C--AT--AT-
1 TTTAAAATAAATCAATCCATACTAATAAATA
3316703 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA
* *
3316735 TTTAAAATAAATCAATACATAC-AACTACA-A
1 TTTAAAATAAATCAATCCATACTAA-TAAATA
3316765 --T--AATAAATCAATCC--A-T-AT-----
1 TTTAAAATAAATCAATCCATACTAATAAATA
*
3316783 TTTAAAATAAATCAATCAATACTAAT-AA-A
1 TTTAAAATAAATCAATCCATACTAATAAATA
3316812 TTTAAAATAAATCAAT-C---C--AT--AT-
1 TTTAAAATAAATCAATCCATACTAATAAATA
*
3316834 TTTAAAATAAATCAATCTATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA
3316866 TTTAAAATAAATCAAT-C---C--AT--AT-
1 TTTAAAATAAATCAATCCATACTAATAAATA
*
3316888 TTTAAAATAAATCAATCCATACCAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA
* * **
3316920 TTTAAAATTACAACTACAAT-AATAAATCAATCCATA
1 TTTAAAA-TA-AA-T-CAATCCAT-ACT-AATAAATA
3316956 TTTTAAAATAAATCAATCCATACTAATAAATTA
1 -TTTAAAATAAATCAATCCATACTAATAAA-TA
3316989 TTTAAAATAAATCAAT-C---C--AT--AT-
1 TTTAAAATAAATCAATCCATACTAATAAATA
*
3317011 TTTAAAATAAATCAATCCATAC-AACTACA-A
1 TTTAAAATAAATCAATCCATACTAA-TAAATA
3317041 --T--AATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA
3317069 TTTAAAATAAATCAAT-C---C--AT--AT-
1 TTTAAAATAAATCAATCCATACTAATAAATA
3317091 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA
3317123 TTTAAAATAAATCAAT-C---C--AT--AT-
1 TTTAAAATAAATCAATCCATACTAATAAATA
3317145 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAA-TA
3317177 TTTAAAATAAAT
1 TTTAAAATAAAT
3317189 TATTTTAAAA
Statistics
Matches: 492, Mismatches: 22, Indels: 212
0.68 0.03 0.29
Matches are distributed among these distances:
20 2 0.00
22 124 0.25
23 14 0.03
24 9 0.02
25 2 0.00
26 65 0.13
27 3 0.01
28 20 0.04
29 16 0.03
30 9 0.02
31 12 0.02
32 175 0.36
33 11 0.02
34 5 0.01
35 5 0.01
36 9 0.02
37 11 0.02
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (31 bp):
TTTAAAATAAATCAATCCATACTAATAAATA
Found at i:3316605 original size:80 final size:79
Alignment explanation
Indices: 3316520--3317143 Score: 538
Period size: 80 Copynumber: 7.9 Consensus size: 79
3316510 AATTATTTAA
3316520 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAA-TATTTAAAATAAATCAAT
*
3316585 CCATACAACTACAA-T
65 CCATACAA-TAAAATT
*
3316600 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACAAATAAATGATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAAT-ATTTAAAATAAATCAAT
*
3316665 CTATACTAATAAATTATTT
65 CCATAC-AATAAA--A-TT
3316684 AAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
1 --AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAA-TATTTAAAATAAATCA
* *
3316749 ATACATACAACTACAA-T
63 ATCCATACAA-TAAAATT
*
3316766 AATAAATCAATCCATATTTTAAAATAAATCAATCAATACTAAT-AA-ATTTAAAATAAATCAATC
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATATTTAAAATAAATCAATC
*** *
3316829 CATATTTTAAAATA
66 CATACAATAAAATT
* * *
3316843 AATCAATCTATACTAATAAATTATTTAAAATAAATCAAT-C---C--AT--AT-TTTAAAATAAA
1 AATAAATCAAT-C-CAT--A-T-TTTAAAATAAATCAATCCATACTAATAAATATTTAAAATAAA
3316899 TCAATCCATACCAAT-AAATT
60 TCAATCCATA-CAATAAAATT
* * * * **
3316919 ATTTAAA--ATTACA-ACTACAATAATAAATCAAT-C---C--AT--AT-TTTAAAATAAATCAA
1 A-ATAAATCAATCCATATTTTAA-AATAAATCAATCCATACTAATAAATATTTAAAATAAATCAA
3316972 TCCATACTAATAAATTATTT
64 TCCATAC-AATAAA--A-TT
*
3316992 AAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC-AACTACA-A--T--AATAAATCA
1 --AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAA-TAAATATTTAAAATAAATCA
3317051 ATCCATACTAATAAATTATTT
63 ATCCATAC-AATAAA--A-TT
3317072 AAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
1 --AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAA-TATTTAAAATAAATCA
3317137 ATCCATA
63 ATCCATA
3317144 TTTTAAAATA
Statistics
Matches: 459, Mismatches: 38, Indels: 88
0.78 0.06 0.15
Matches are distributed among these distances:
68 4 0.01
69 41 0.09
70 3 0.01
72 1 0.00
73 3 0.01
74 4 0.01
75 2 0.00
76 46 0.10
77 41 0.09
78 1 0.00
79 6 0.01
80 187 0.41
81 6 0.01
82 6 0.01
83 16 0.03
84 4 0.01
85 2 0.00
86 85 0.19
87 1 0.00
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (79 bp):
AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATATTTAAAATAAATCAATC
CATACAATAAAATT
Found at i:3316646 original size:22 final size:22
Alignment explanation
Indices: 3316573--3316646 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
3316563 AAATTATTTA
*
3316573 AAATAAATCAATCCATACAACTACA
1 AAATAAATCAATCCATACAA--A-T
***
3316598 ATAATAAATCAATCCATA-TTTT
1 A-AATAAATCAATCCATACAAAT
3316620 AAAATAAATCAATCCATACAAAT
1 -AAATAAATCAATCCATACAAAT
3316643 AAAT
1 AAAT
3316647 GATTTAAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
22 20 0.51
23 2 0.05
25 1 0.03
26 16 0.41
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (22 bp):
AAATAAATCAATCCATACAAAT
Found at i:3316707 original size:22 final size:22
Alignment explanation
Indices: 3316681--3316723 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
3316671 TAATAAATTA
3316681 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
3316703 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
3316724 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:3316732 original size:22 final size:22
Alignment explanation
Indices: 3316683--3316731 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
3316673 ATAAATTATT
**
3316683 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
3316705 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
3316728 TAAA
1 TAAA
3316732 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:3316794 original size:22 final size:22
Alignment explanation
Indices: 3316766--3316850 Score: 98
Period size: 22 Copynumber: 3.5 Consensus size: 22
3316756 CAACTACAAT
3316766 AATAAATCAATCCATATTTTAA
1 AATAAATCAATCCATATTTTAA
*
3316788 AATAAATCAATCAATACTAATAAATTTAA
1 AATAAATCAATC----C--AT-ATTTTAA
3316817 AATAAATCAATCCATATTTTAA
1 AATAAATCAATCCATATTTTAA
3316839 AATAAATCAATC
1 AATAAATCAATC
3316851 TATACTAATA
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
22 30 0.56
23 2 0.04
25 1 0.02
26 1 0.02
28 2 0.04
29 18 0.33
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATCAATCCATATTTTAA
Found at i:3316863 original size:22 final size:22
Alignment explanation
Indices: 3316814--3316862 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
3316804 CTAATAAATT
**
3316814 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
3316836 TAAAATAAATCAATCTATACTAA
1 TAAAATAAATCAATCCATA-TAA
3316859 TAAA
1 TAAA
3316863 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:3316892 original size:22 final size:22
Alignment explanation
Indices: 3316866--3316908 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
3316856 TAATAAATTA
3316866 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
3316888 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
3316909 CCAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:3316917 original size:22 final size:22
Alignment explanation
Indices: 3316868--3316985 Score: 69
Period size: 22 Copynumber: 5.2 Consensus size: 22
3316858 ATAAATTATT
***
3316868 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATACAA
3316890 TAAAATAAATCAATCCATACCAA
1 TAAAATAAATCAATCCATA-CAA
* ** * *
3316913 TAAATTATTTAAAATTACAACTACAA
1 TAAAATAAAT-CAA-T-CCA-TACAA
***
3316939 T--AATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATACAA
3316959 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATAC-AA
3316982 TAAA
1 TAAA
3316986 TTATTTAAAA
Statistics
Matches: 69, Mismatches: 19, Indels: 15
0.67 0.18 0.15
Matches are distributed among these distances:
20 3 0.04
21 2 0.03
22 36 0.52
23 13 0.19
24 6 0.09
25 1 0.01
26 6 0.09
27 2 0.03
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATACAA
Found at i:3316981 original size:123 final size:123
Alignment explanation
Indices: 3316684--3317034 Score: 470
Period size: 123 Copynumber: 2.8 Consensus size: 123
3316674 TAAATTATTT
3316684 AAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
1 AAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
* * ** * * * *
3316749 ATACATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATCAATACTAATAAATT
66 ATCCAT---ATTTTAA-AATAAATCAATCCATA----CAAATAAATCAATCAATAATAACAAATA
*
3316814 T
123 C
*
3316815 AAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCA
1 AAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
* * * * * *
3316880 ATCCATATTTTAAAATAAATCAATCCATACCAATAAATTATTTAA-AATTACAACTAC
66 ATCCATATTTTAAAATAAATCAATCCATACAAATAAATCAATCAATAATAACAAATAC
3316937 AATAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATC
1 AA-AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATC
3317002 AATCCATATTTTAAAATAAATCAATCCATACAA
65 AATCCATATTTTAAAATAAATCAATCCATACAA
3317035 CTACAATAAT
Statistics
Matches: 201, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
122 8 0.04
123 104 0.52
127 16 0.08
128 4 0.02
131 69 0.34
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (123 bp):
AAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
ATCCATATTTTAAAATAAATCAATCCATACAAATAAATCAATCAATAATAACAAATAC
Found at i:3317015 original size:22 final size:22
Alignment explanation
Indices: 3316989--3317031 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
3316979 TAATAAATTA
3316989 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
3317011 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
3317032 CAACTACAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:3317064 original size:123 final size:119
Alignment explanation
Indices: 3316817--3317064 Score: 374
Period size: 123 Copynumber: 2.0 Consensus size: 119
3316807 ATAAATTTAA
*
3316817 AATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
*
3316882 CCATATTTTAAAATAAATCAATCCATACCAATAAATTATTTAAAATTACAA-CTAC-AAT
66 CCATATTTTAAAATAAATCAATCCATA-CAATAAA-TA-AT-AAA-T-CAATCTACTAAT
3316940 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
3317005 CCATATTTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATACTAAT
66 CCATATTTTAAAATAAATCAATCCATACAA-TA-AATAATAAATCAAT-C-TACTAAT
3317063 AA
1 AA
3317065 ATTATTTAAA
Statistics
Matches: 117, Mismatches: 2, Indels: 12
0.89 0.02 0.09
Matches are distributed among these distances:
119 3 0.03
120 1 0.01
121 4 0.03
122 7 0.06
123 100 0.85
124 2 0.02
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (119 bp):
AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
CCATATTTTAAAATAAATCAATCCATACAATAAATAATAAATCAATCTACTAAT
Found at i:3317095 original size:22 final size:22
Alignment explanation
Indices: 3317069--3317111 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
3317059 TAATAAATTA
3317069 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
3317091 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
3317112 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:3317120 original size:22 final size:22
Alignment explanation
Indices: 3317071--3317119 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
3317061 ATAAATTATT
**
3317071 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
3317093 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
3317116 TAAA
1 TAAA
3317120 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:3317141 original size:257 final size:250
Alignment explanation
Indices: 3316684--3317223 Score: 816
Period size: 257 Copynumber: 2.1 Consensus size: 250
3316674 TAAATTATTT
3316684 AAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
1 AAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
* **
3316749 ATACATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATCAATCAATACTAATAAATT
66 ATACAT--AACTACAATAATAAATCAATCCATACTACAAAATAAATCAATCAATACTAATAAATT
*
3316814 TAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATC
129 TAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATC
3316879 AATCCATATTTTAAAATAAATCAATCCATACCAATAAATTATTTAAAATTACAACTA-C
194 AATCCATATTTTAAAATAAATCAATCCATACCAATAAATTATTTAAAA-TA-AACTATC
3316937 AATAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATC
1 AA-AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATC
* * ** *
3317002 AATCCAT-ATTTTAA-AATAAATCAATCCATACAACTACAATAATAAATCAATCCATACTAATAA
65 AATACATAACTACAATAATAAATCAATCCAT---ACTACAA-AATAAATCAATCAATACTAAT-A
3317065 ATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAA
125 A--ATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAA
* * *
3317130 TAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATTATTTT
188 TAAATCAATCCATATTTTAAAATAAATCAATCCATACCAATAAATTATTTAAAATAAACTA--TC
*
3317195 AAAATAAATCAATCCATATTTTATAATAA
1 AAAATAAATCAATCCATATTTTAAAATAA
3317224 TTTATTTTAA
Statistics
Matches: 263, Mismatches: 13, Indels: 18
0.89 0.04 0.06
Matches are distributed among these distances:
250 15 0.06
251 4 0.02
253 6 0.02
254 88 0.33
255 6 0.02
256 2 0.01
257 140 0.53
258 2 0.01
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (250 bp):
AAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCA
ATACATAACTACAATAATAAATCAATCCATACTACAAAATAAATCAATCAATACTAATAAATTTA
AAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAA
TCCATATTTTAAAATAAATCAATCCATACCAATAAATTATTTAAAATAAACTATC
Found at i:3317149 original size:22 final size:22
Alignment explanation
Indices: 3317123--3317223 Score: 94
Period size: 22 Copynumber: 4.5 Consensus size: 22
3317113 TAATAAATTA
3317123 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
3317145 TTTAAAATAAATCAATCCATACT
1 TTTAAAATAAATCAATCCATA-T
** * ** * **
3317168 AATAAATTATTTAAAATAAATTAT
1 TTTAAAATAAAT-CAATCCA-TAT
3317192 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
3317214 TTTATAATAA
1 TTTAAAATAA
3317224 TTTATTTTAA
Statistics
Matches: 59, Mismatches: 17, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
22 33 0.56
23 12 0.20
24 12 0.20
25 2 0.03
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:3317197 original size:15 final size:15
Alignment explanation
Indices: 3317168--3317315 Score: 190
Period size: 15 Copynumber: 9.5 Consensus size: 15
3317158 AATCCATACT
3317168 AATAAATTA-TTTAA
1 AATAAATTATTTTAA
3317182 AATAAATTATTTTAA
1 AATAAATTATTTTAA
*
3317197 AATAAATCAATCCATATTTTAT
1 AAT--A--AAT---TATTTTAA
*
3317219 AATAATTTATTTTAA
1 AATAAATTATTTTAA
*
3317234 AATAAATTATTTTAT
1 AATAAATTATTTTAA
3317249 AATAAATTATTTTAA
1 AATAAATTATTTTAA
*
3317264 AATAAATTATTTTAT
1 AATAAATTATTTTAA
3317279 AATAAATTATTTTAA
1 AATAAATTATTTTAA
3317294 AATAAATTATTTTAA
1 AATAAATTATTTTAA
3317309 AATAAAT
1 AATAAAT
3317316 AACCTTATTA
Statistics
Matches: 118, Mismatches: 8, Indels: 15
0.84 0.06 0.11
Matches are distributed among these distances:
14 9 0.08
15 92 0.78
17 1 0.01
18 2 0.02
19 3 0.03
20 1 0.01
22 10 0.08
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
AATAAATTATTTTAA
Found at i:3317198 original size:203 final size:200
Alignment explanation
Indices: 3316839--3317223 Score: 539
Period size: 203 Copynumber: 1.9 Consensus size: 200
3316829 CATATTTTAA
*
3316839 AATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAAT
1 AATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAAT
* *
3316904 CCATACCAATAAATTATTTAAAATTACAACTACAATAATAAATCAATCCATATTTTAAAATAAAT
66 CCATACCAATAAATTATTTAAAATAACAACTACAATAATAAATCAATCCATA-TCT-AAATAAAT
*
3316969 CAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACA
129 CAAT-CATACAAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACA
3317034 ACTACAAT
193 ACTACAAT
3317042 AATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAAT
1 AATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAAT
* *
3317107 CCATACTAATAAATTATTTAAAATAAATCAA-TCCATATTTTAAAATAAATCAATCCATA-CT-A
66 CCATACCAATAAATTATTTAAAAT-AA-CAACTACA-A---T--AATAAATCAATCCATATCTAA
* * *
3317169 ATAAAT-TAT-TTA-AAATAAATTATTTTAAAATAAATCAATCCATATTTTATAATAA
123 ATAAATCAATCATACAAATAAATTA-TTTAAAATAAATCAATCCATATTTTAAAATAA
3317224 TTTATTTTAA
Statistics
Matches: 164, Mismatches: 9, Indels: 18
0.86 0.05 0.09
Matches are distributed among these distances:
202 9 0.05
203 120 0.73
204 4 0.02
205 6 0.04
206 7 0.04
208 2 0.01
210 16 0.10
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (200 bp):
AATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAAT
CCATACCAATAAATTATTTAAAATAACAACTACAATAATAAATCAATCCATATCTAAATAAATCA
ATCATACAAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACAACT
ACAAT
Found at i:3317203 original size:69 final size:67
Alignment explanation
Indices: 3317114--3317270 Score: 210
Period size: 69 Copynumber: 2.3 Consensus size: 67
3317104 AATCCATACT
*
3317114 AATAAATTA-TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA-
1 AATAAATTATTTTAAAATAAATCAATCCATATTTTAAAAT-AATCAAT-CATA-AAATAAATTAT
3317177 TTTAA
63 TTTAA
* ** **
3317182 AATAAATTATTTTAAAATAAATCAATCCATATTTTATAATAATTTATTTTAAAATAAATTATTTT
1 AATAAATTATTTTAAAATAAATCAATCCATATTTTAAAATAATCAATCATAAAATAAATTATTTT
*
3317247 AT
66 AA
3317249 AATAAATTATTTTAAAATAAAT
1 AATAAATTATTTTAAAATAAAT
3317271 TATTTTATAA
Statistics
Matches: 80, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
66 9 0.11
67 28 0.35
68 14 0.17
69 29 0.36
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (67 bp):
AATAAATTATTTTAAAATAAATCAATCCATATTTTAAAATAATCAATCATAAAATAAATTATTTT
AA
Found at i:3318214 original size:20 final size:20
Alignment explanation
Indices: 3318168--3318206 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
3318158 TGTAAAATTT
3318168 AAATTTTAAAAATATATTCA
1 AAATTTTAAAAATATATTCA
3318188 AAATTTTAAAAA-ATATTCA
1 AAATTTTAAAAATATATTCA
3318207 CTAATTTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (20 bp):
AAATTTTAAAAATATATTCA
Found at i:3319171 original size:22 final size:22
Alignment explanation
Indices: 3319146--3319218 Score: 80
Period size: 22 Copynumber: 3.4 Consensus size: 22
3319136 ATAATTAAAT
3319146 AATTATTTATATATATTTATAA
1 AATTATTTATATATATTTATAA
*
3319168 AATT-TATAT-TATTATTTATAA
1 AATTATTTATATA-TATTTATAA
* *
3319189 AATTATTTTTATA-ATATTATGA
1 AATTATTTATATATAT-TTATAA
3319211 AATTATTT
1 AATTATTT
3319219 TAAAATATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
20 2 0.05
21 19 0.44
22 20 0.47
23 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (22 bp):
AATTATTTATATATATTTATAA
Found at i:3319201 original size:14 final size:15
Alignment explanation
Indices: 3319175--3319208 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
3319165 TAAAATTTAT
3319175 ATTATTATTTATAAA
1 ATTATTATTTATAAA
*
3319190 ATTATT-TTTATAAT
1 ATTATTATTTATAAA
3319204 ATTAT
1 ATTAT
3319209 GAAATTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTATTATTTATAAA
Found at i:3319220 original size:21 final size:21
Alignment explanation
Indices: 3319146--3319227 Score: 78
Period size: 21 Copynumber: 3.8 Consensus size: 21
3319136 ATAATTAAAT
3319146 AATTA-TTTATATATATTTATAA
1 AATTATTTTATA-ATA-TTATAA
* *
3319168 AATTTATATTATTAT-TTATAA
1 AA-TTATTTTATAATATTATAA
*
3319189 AATTATTTTTATAATATTATGA
1 AATTA-TTTTATAATATTATAA
*
3319211 AATTATTTTAAAATATT
1 AATTATTTTATAATATT
3319228 TATTTAATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
20 3 0.06
21 26 0.52
22 12 0.24
23 5 0.10
24 4 0.08
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (21 bp):
AATTATTTTATAATATTATAA
Found at i:3319236 original size:22 final size:23
Alignment explanation
Indices: 3319180--3319230 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
3319170 TTTATATTAT
*
3319180 TATTTATAAAATTATTTTTATAA
1 TATTTATAAAATTATTTTTAAAA
*
3319203 TA-TTATGAAATTA-TTTTAAAA
1 TATTTATAAAATTATTTTTAAAA
3319224 TATTTAT
1 TATTTAT
3319231 TTAATTTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 9 0.36
22 14 0.56
23 2 0.08
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
TATTTATAAAATTATTTTTAAAA
Found at i:3319294 original size:15 final size:15
Alignment explanation
Indices: 3319276--3319327 Score: 50
Period size: 15 Copynumber: 3.1 Consensus size: 15
3319266 ATAATTTTAT
3319276 TTATTTTAAATAATA
1 TTATTTTAAATAATA
*
3319291 TTATTTATAAATTATTTA
1 TTATTT-TAAA-TA-ATA
3319309 TTTAATTTTAAATAATA
1 -TT-ATTTTAAATAATA
3319326 TT
1 TT
3319328 GTAACCAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
15 6 0.20
16 6 0.20
17 4 0.13
18 4 0.13
19 6 0.20
20 4 0.13
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATTTTAAATAATA
Found at i:3319296 original size:19 final size:19
Alignment explanation
Indices: 3319213--3319327 Score: 80
Period size: 19 Copynumber: 5.9 Consensus size: 19
3319203 TATTATGAAA
3319213 TTATTTT-AA-AATATTTAT
1 TTATTTTAAATAATA-TTAT
*
3319231 TTAATTTTCAAAATCATATTAT
1 TT-ATTTT--AAATAATATTAT
*
3319253 TTATTCATTTGAAATAATTTTAT
1 TTA-T--TTT-AAATAATATTAT
3319276 TTATTTTAAATAATATTAT
1 TTATTTTAAATAATATTAT
*
3319295 TTA---TAAATTAT-TTAT
1 TTATTTTAAATAATATTAT
3319310 TTAATTTTAAATAATATT
1 TT-ATTTTAAATAATATT
3319328 GTAACCAAAG
Statistics
Matches: 77, Mismatches: 7, Indels: 24
0.71 0.06 0.22
Matches are distributed among these distances:
15 6 0.08
16 8 0.10
18 2 0.03
19 26 0.34
20 5 0.06
21 1 0.01
22 10 0.13
23 16 0.21
24 3 0.04
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.57
Consensus pattern (19 bp):
TTATTTTAAATAATATTAT
Found at i:3319537 original size:30 final size:33
Alignment explanation
Indices: 3319464--3319541 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 33
3319454 TATTTTTATA
*
3319464 ATATTATATATATAATTATTTCATATACTTTTTT
1 ATATTATATATA-AATTATTTAATATACTTTTTT
**
3319498 ATAAAATATATAAATTATTTAAT-TA-TTTTTT
1 ATATTATATATAAATTATTTAATATACTTTTTT
*
3319529 GT-TTATATATAAA
1 ATATTATATATAAA
3319542 GTGAAAAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
30 9 0.24
31 7 0.18
32 2 0.05
33 10 0.26
34 10 0.26
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (33 bp):
ATATTATATATAAATTATTTAATATACTTTTTT
Found at i:3319539 original size:32 final size:32
Alignment explanation
Indices: 3319465--3319540 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 32
3319455 ATTTTTATAA
*
3319465 TATTATATATATAATTATTTCATATACTTTTT
1 TATTATATATATAATTATTTAATATACTTTTT
* *
3319497 TATAAAATATATAAATTATTTAAT-TA-TTTTT
1 TATTATATATAT-AATTATTTAATATACTTTTT
*
3319528 TGTT-TATATATAA
1 TATTATATATATAA
3319541 AGTGAAAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
29 2 0.05
30 6 0.16
31 7 0.19
32 12 0.32
33 10 0.27
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (32 bp):
TATTATATATATAATTATTTAATATACTTTTT
Found at i:3320807 original size:30 final size:30
Alignment explanation
Indices: 3320743--3320815 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 30
3320733 TTTTAAATAG
*
3320743 TTATTA-TTTTTATTAATATATTTATGTAA
1 TTATTATTTTTTATTAAAATATTTATGTAA
*
3320772 ATATTATTTTTTATTAAAATAATATTAT-T-A
1 TTATTATTTTTTATTAAAAT-AT-TTATGTAA
3320802 TTATTATTTATTTA
1 TTATTATTT-TTTA
3320816 GAATTATTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
29 5 0.14
30 21 0.57
31 7 0.19
32 4 0.11
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (30 bp):
TTATTATTTTTTATTAAAATATTTATGTAA
Found at i:3320976 original size:17 final size:17
Alignment explanation
Indices: 3320954--3321007 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
3320944 AATGTTAATA
3320954 TTTAAATTTATTTTTAT
1 TTTAAATTTATTTTTAT
* * * *
3320971 TTTAAAGTTATTATGAA
1 TTTAAATTTATTTTTAT
* *
3320988 TTTATATTAATTTTTAT
1 TTTAAATTTATTTTTAT
3321005 TTT
1 TTT
3321008 TTATAATATT
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTAAATTTATTTTTAT
Found at i:3322557 original size:21 final size:21
Alignment explanation
Indices: 3322527--3322574 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
3322517 GCAGGGGTAC
* *
3322527 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
* *
3322548 ATGCCAAGCCCACCAGTTTAT
1 ATGCCAAGCCCACCACTTCAT
3322569 ATGCCA
1 ATGCCA
3322575 TCTCCGCAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:3322604 original size:21 final size:21
Alignment explanation
Indices: 3322578--3322671 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
3322568 TATGCCATCT
* *
3322578 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATGCCTAGC
*
3322599 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATGCCTAGC
3322620 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
3322641 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
3322662 CCGCAGGGTT
1 CCGCAGGGTT
3322672 TTATACCATA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
20 2 0.03
21 65 0.94
22 2 0.03
ACGTcount: A:0.18, C:0.35, G:0.27, T:0.20
Consensus pattern (21 bp):
CCGCAGGGTTACATGCCTAGC
Found at i:3324584 original size:14 final size:14
Alignment explanation
Indices: 3324565--3324593 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
3324555 GGCGTTGGGT
3324565 GTAGTTATAGAAGC
1 GTAGTTATAGAAGC
3324579 GTAGTTATAGAAGC
1 GTAGTTATAGAAGC
3324593 G
1 G
3324594 GGATCAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.28
Consensus pattern (14 bp):
GTAGTTATAGAAGC
Found at i:3328005 original size:635 final size:640
Alignment explanation
Indices: 3324579--3344002 Score: 17603
Period size: 650 Copynumber: 29.9 Consensus size: 640
3324569 TTATAGAAGC
* * * *
3324579 GTAGTTATAGAAGC-GGGATCAGTAACCGTTTAAGGATAAGATTGGTATTTTCAATAATAATTGA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* * * * * * *
3324643 GATTCCGATTCTGTATTGTTGTTTACTGTTCAGAAATTTTAAAGAC-AAAAAG-CC----CGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
** * *
3324702 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTTTGCAATGATCACACCTTCTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
** * * *
3324767 CTTTTTACAGTAACAAAAGTTTGTGGCGTTTAAGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
* *
3324832 ACTTTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCGTTAAA
261 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
* *
3324897 TAAAGATGGAATCCCAACGTCGTGGACATATTTTTAGTGCCAATATTCATTATGTTAGACCACTT
326 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
*
3324962 AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGATTTTAACCATGTGGTCGTGGGTTCGAT
391 AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
* *
3325027 TCCCACAATCGGCGGTTACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCCACAA
456 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T--A-AA
3325092 TCGAATAATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGAT
515 --G-AT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGAT
*
3325157 CCCTGTGTTTGACTCGACTACCTAAAACATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
576 CCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
* *
3325222 GTAGTTATAGAAGCGGGGATCAGGCACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* * *
3325287 GATTCCGATTTTGTCCTCTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGTCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
*
3325352 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACAACTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
* * * * *
3325417 CTTTCCACAGTAACAAAAGTTTGTGGTGTTTAGGGTCATCAACTTCGTTTGGGCTTTTGGAGGAA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
3325482 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
261 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
3325547 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
326 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
*
3325612 AACGAAGACGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
391 AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
* * *
3325677 TCCCACAATCGGCGGTCACTTTTCACTCTCTTTTGCCATTTTCTCGTTGCTTGATTGTTCCACAA
456 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T----AA
*
3325742 TCAGATAATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATTGAT
514 --AGAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGAT
*
3325807 CCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTTTCTTTTCTTTATCGTTGGGT
576 CCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
*
3325872 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTATA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* * * *
3325937 GATTCCGATTTTGTCATGTTATTCATTGTTCAGAATTTTTGAAGACGAAAAGTCCGTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
3326002 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
* * *
3326067 CTTTCCACAGTAACAAAAGTTCGTGGTGTTTAGGGACGTCAACTTCGTTTGGGCTTTTGGGGGAA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
* *
3326132 ACTCTAATTTTGCCAAACTTGGCTCATGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
261 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
*
3326197 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCTAATATTCACTATGTTAGACCACTT
326 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
*
3326262 AACGAAGTCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
391 AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
3326327 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCCACAA
456 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T--A-AA
*
3326392 TCGGATAATTCTGCATATTTTAAAATGTTTGTAGCATGTCATCTGTTCT-CCTTGGTAAAATGGA
515 ---GAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTT-TGCCTTGGTAAAATGGA
* *
3326456 TCCCTGTGTTTAACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCCTTGGG
575 TCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGG
3326521 T
640 T
* * *
3326522 GTAGTTACAGAAGCGGGGATCAAGAACCGTTTAAGGATAAGATTGATATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* *
3326587 GATTACGATTTTGTCTTGTTGTTCATTGTTCATAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
* * *
3326652 TATTTACACAAGCTCATTCATAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
*
3326717 CTTTCCACAGTAATAAAAGTTTGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
*
3326782 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGAAAAAATAACTATTTCAACAAGAAACCATTAAA
261 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
*
3326847 TAAAGATGGAATCCCAATGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
326 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
* * *
3326912 AACGAAGCCGTCTTAGCTTAGCTGGTAGAGCGCATGACTTTTAACCATGTGGTCGTGGGTTCGAA
391 AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
*
3326977 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTTCCATTTCCTCGTTGCTTGATTGTTCCACAA
456 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T--A-AA
*
3327042 TCGGATAATTATGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGAT
515 ---GAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGAT
*
3327107 CACTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
576 CCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
3327172 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
*
3327237 GATTCCGATTTTGTCTTGTTGTTTATTGTTCAGAATTTTTGAAGAC-AAAGAGGCCCTTGGCGTG
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAA-AGGCCCTTGGCGTG
* *
3327301 TCATTTACTCAAGCTCATTATTAGATTTATTTATTGAATAGTATTGGG-ATATGAGCACACCTTT
130 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCA-ATGAGCACACCTTT
* * * * *
3327365 TACTTTCCATAGTAATAAAAGTTCATGGCGTATAAGGTCGTCAACTTCATTTGGGCTTTTGGGGG
194 TACTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGG
*
3327430 AAACTCTTATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTA-TTCAAACAAGAAACCATT
259 AAACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTC-AACAAGAAACCATT
* * * * *
3327494 AAATAAAGATGAAATCCCAACGTAGTGGACATATTTGTAGTTCCAATATTCACTATATTACACCA
323 AAATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCA
* * *
3327559 CTTAATGAAGCCGTCTTAGCTCAGTTGGTAGAGCGCATGGCTTTTAACTATGTGGTCGTGGGTTC
388 CTTAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTC
* * *
3327624 GATTCCCACAGTCGACGGTCATTCTTCACTCCCTTTTGCCATTTCCTCGTTGCTTG-G-AAA-AT
453 GATTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGTGTAAAGAT
* * *
3327686 -TT-TGAATATTTTGAAATGTTTGTAGAATGTCATCTGCTTGCCTTGGTAAAATGGATCCCTGTG
518 ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTGTG
* * * *
3327749 TTTGAGTCGACTATCTAAATCATTAACTTTTTCTGTTGTCTTTTCTTTATCATTGGGT
583 TTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
* * *
3327807 GTAGTTATAGAAACGGGGGTCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* *
3327872 GATTTCGATTTTGTCTTGTTGTTCATTGTTAAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
*
3327937 CATTTACTGAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
* ** * *
3328002 CTTTCCACAGAAATAAAAGTTTATGGCGTTTAGGTTCGTCAACTTCGTTTGGGATTTTGGGGGAA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
* * *
3328067 ACTCTGATGTCGCTAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
261 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
* * *
3328132 TAAAGATGTAATCCCAACGTCGTGGACATATTTGTAGTGACAATATTCACTATGTTAGACCATTT
326 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
* * * * *
3328197 AACGAAGTCGTCTTAGATCAGCTGGTAGAGCACATGGCTTTTAACTATGTGGTCATGGGTTCGAT
391 AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
* * *
3328262 TCCCACAGTCGACGATCACTCTTCACTCTCTTTTGCCATTTCCTCGTTACTTGATTGTTCCACAA
456 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T----AA
* *
3328327 TAGGATAATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTATTTGCCTTGGTAAAATAGAT
514 -A-GAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGAT
* *
3328392 CCCTGTGTTTGACTCGACCACCTAAATCATTAATTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
576 CCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
*
3328457 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* * * * *
3328522 AATTCCAATTTTGTCCTGTTGTTCATTGTTAAGAATTTTTAAAAGACGAAAAGGCCCTTGGCGTG
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTT-GAAGACGAAAAGGCCCTTGGCGTG
*
3328587 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTGTTGGGCAATGAGCACACCTTTT
130 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTT
* * ** * * *
3328652 ACTTTCCATAGAAACCAAAGTTCGTGGCATTTAGGGTCTTCAACTTCGTTTGGGCTTTTGGGGAA
195 ACTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGA
* *
3328717 AACTCTTATTTTGCCAAACTTGGTTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
260 AACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
* ** *
3328782 ATAAAGGTGGAATTTCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTAAGTTAGACCACT
325 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACT
*
3328847 TAACGAAGCCGTCATAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
390 TAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
* * *
3328912 TTCCCACAGTCGGCGGTCATTCTTCACTTTCTTTTTCCATTTCCTCGTTGCTTGATTGTTCCATA
455 TTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T--A-A
*
3328977 ATCGGATAATTC-GTTATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGG
514 A---GAT-ATTCTG-CATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGG
*
3329041 ATCACTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGG
574 ATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGG
3329106 GT
639 GT
3329108 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* *
3329173 GATTCCGATTTTGTCTTATTGTTTATTGTTCAGAATTTTTGAAGAC-AAAGAGGCCCTTGGCGTG
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAA-AGGCCCTTGGCGTG
* *
3329237 TCATTTACTCAAGCTCATTATTAGATTTATTTATTGAATAGTATTGGG-ATATGAGCACACCTTT
130 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCA-ATGAGCACACCTTT
* * * * *
3329301 TACTTTCCATAGTAATAAAAGTTCATGGCGTATAAGGTCGTCAACTTCATTTGGGCTTTTGGGGG
194 TACTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGG
*
3329366 AAACTCTTATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTA-TTCAAACAAGAAACCATT
259 AAACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTC-AACAAGAAACCATT
* * * * *
3329430 AAATAAAGATGAAATCCCAACGTAGTGGACATATTTGTAGTTCCAATATTCACTATATTACACCA
323 AAATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCA
* * *
3329495 CTTAATGAAGCCGTCTTAGCTCAGTTGGTAGAGCGCATGGCTTTTAACTATGTGGTCGTGGGTTC
388 CTTAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTC
* *
3329560 GATT-CCATCAGTCGACGGTCACTCTTCACTCCCTTTTGCCATTTCCTCGTTGCTTG-G-AAA-A
453 GATTCCCA-CAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGTGTAAAGA
* * *
3329621 T-TT-TGAATATTTTGAAATGTTTGTAGAATGTCATCTGCTTGCCTTGGTAAAATGGATCCCTGT
517 TATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTGT
* *
3329684 GTTTGACTCGACTACCTAAATCATTAACTTTTTCTGTTGTCTTTTCTTTATCATTGGGT
582 GTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
* * *
3329743 GTAGTTATAGAAACGGGGGTCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* *
3329808 GATTTCGATTTTGTCTTGTTGTTCATTGTTAAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
*
3329873 CATTTACTGAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
* ** * *
3329938 CTTTCCACAGAAATAAAAGTTTATGGCGTTTAGGTTCGTCAACTTCGTTTGGGATTTTGGGGGAA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
* * *
3330003 ACTCTGATGTCGCTAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
261 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
* * *
3330068 TAAAGATGTAATCCCAACGTCGTGGACATATTTGTAGTGACAATATTCACTATGTTAGACCATTT
326 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
* * * * *
3330133 AACGAAGTCGTCTTAGATCAGCTGGTAGAGCACATGGCTTTTAACTATGTGGTCATGGGTTCGAT
391 AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
* * *
3330198 TCCCACAGTCGACGATCACTCTTCACTCTCTTTTGCCATTTCCTCGTTACTTGATTGTTCCACAA
456 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T----AA
* *
3330263 TAGGATAATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTATTTGCCTTGGTAAAATAGAT
514 -A-GAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGAT
*
3330328 CCCTGTGTTTGACTCGACTACCTAAATCATTAATTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
576 CCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
*
3330393 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* * * * *
3330458 AATTCCAATTTTGTCCTGTTGTTCATTGTTAAGAATTTTTAAAAGACGAAAAGG-CCTTGGCGTG
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTT-GAAGACGAAAAGGCCCTTGGCGTG
*
3330522 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTGTTGGGCAATGAGCACACCTTTT
130 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTT
* * ** * * *
3330587 ACTTTCCATAGAAACCAAAGTTCGTGGCATTTAGGGTCTTCAACTTCGTTTGGGCTTTTGGGGAA
195 ACTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGA
* *
3330652 AACTCTTATTTTGCCAAACTTGGTTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
260 AACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
* ** *
3330717 ATAAAGGTGGAATTTCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTAAGTTAGACCACT
325 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACT
*
3330782 TAACGAAGCCGTCATAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
390 TAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
* *
3330847 TTCCCACAGTCGGCGGTCATTCTTCACTCTCTTTTTCCATTTCCTCGTTGCTTGATTGTTCCATA
455 TTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T--A-A
* *
3330912 ATCGGATAATTC-GTTATATTTTGAAATGTTTGTAGCATGTCATATGTTTGCCTTGGTAAAATGG
514 A---GAT-ATTCTG-CATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGG
* *
3330976 ATCACTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTATTTATCGTTGG
574 ATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGG
3331041 GT
639 GT
*
3331043 GTAGTTATAGAAGCAGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATA-TTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
*
3331107 GATTCCGATTTTGTCTTGTTGTTTATTGTTCAGAA-TTTTGAAGAC-AAAGAGGCCCTTGGCG-G
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAA-AGGCCCTTGGCGTG
3331169 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTG-A-ATTA-TGGG--AT-ATG-ACACCTTT
130 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGA-GCACACCTTT
* * * *
3331227 TACTTTCCATAGT-ATAAAAGTTCATGGCGTATA-GGTCGTCAACTTCATTTGGGCTTTT-GGGG
194 TACTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGG
*
3331289 AAACTCTTATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTA-TTCAAACAAGAAACCATT
259 AAACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTC-AACAAGAAACCATT
* * * * *
3331353 AAATAAAGATGAAATCCCAACGTAGTGGACATATTTGTAGTTCCAATATTCACTATATTACACCA
323 AAATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCA
* * *
3331418 CTTAATGAAGCCGTCTTAGCTCAGTTGGTAGAGCGCATGGCTTTTAACTATGTGGTCGTGGGTTC
388 CTTAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTC
* *
3331483 GATTCCCACAGTCGACGGTCACTCTTCACTCCCTTTTGCCATTTCCTCGTTGCTTG-G-AAA-AT
453 GATTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGTGTAAAGAT
* *
3331545 -TT-TGAATATTTTGAAATGTTTGTAGAATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTGTG
518 ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTGTG
* *
3331608 TTTGACTCGACTACCTAAATCATTAACTTTTTCTGTTGTCTTTTCTTTATCATTGGGT
583 TTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
* * *
3331666 GTAGTTATAGAAACGGGGGTCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* *
3331731 GATTTCGATTTTGTCTTGTTGTTCATTGTTAAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
* * * * * ** * ** *
3331796 CATTTACTGAAGCTCATTCTTAGATTTACGGTCATTCTTCACTCTCT-TT-TTCCAT-TTC-CTC
131 CATTTACTCAAGCTCATTCTTAGATTTA---T--TTATTGAATAT-TATTGGGCAATGAGCACAC
* * * * *** * **** * * * * *
3331857 GTTGCTTGATTGTTCCATAATCGGATAA-TTCGTTATATTTTGAAATGTTTGTAGCATGTCATCT
190 CTT--TT-ACT-TTCCACAGTAATAAAAGTTCG-TGGCGTTT---AGGGTCGT--CA--ACTTC-
* ** * * * *** ** ***
3331921 GTTT--GC-CTT-GGTAAAATGGATCCATG-TGTTTGACTCGACTACCTAAATCATTAACTTCTT
242 GTTTGGGCTTTTGGGGGAAA---CT-C-TGAT-TTTG-C-C-A-AACTTGGCTCA--AGTTTGGA
** * ** * * ***** ** * ** *
3331981 CTATTGTCT-TTTCTTTATCATTGGGTGTAGTT--ATAGAAGCGGGGATCAGGAACCGT-TTAAG
295 AAAATAACTATTTC---AACA-AGAAACCA-TTAAATA-AAGATGGAATC-CCAA-CGTCGT--G
* * * * ** * * * ** * ** *
3332042 GATAAAATTGGTATTTTC--TA-T-AATATTTTAGATTCCAATTTTTTC-ATGTTGTTCATT-GT
350 GA-CATATTTGTAGTGCCAATATTCACTATGTTAGA--CC-A-CTTAACGAAGCCG-TC-TTAGC
* ** * * * * *
3332101 TCAGAATTTTTGAAGACGAAAAGGC------CC-T-TGG-CGT--G-TC-ATT--TAC--TCAAG
408 TCAG-CTGGTAG-AG-CG-CATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCACAGTC-GG
* * * * * * * * * * * * ** * *
3332149 C--TCATTCTT-AGAT-TTTTATTG-AATAT-ATTG-GGCAATGAGCACACCTTTTACTTTCCAT
468 CGGTCACTCTTCA-CTCTCTT-TTGCCATTTCCTCGTTGC-TTGTGTAAAGATATT-C--TGCAT
* *** * * * * *** * * *
3332207 AGTAACAAAAGTTTGTGGCGT-TTAGGGTC-GTCAAACCACT--T--AATGAGA--CC-GTCTTA
527 ATTTTGAAATGTTTGTAGCATGTCA---TCTGT-TTGCC-TTGGTAAAATG-GATCCCTGTGTTT
** * * * *** *
3332263 G-CTC-AGCT-GGTAGAGCGCATGGCTTTTAAC--CATGTGGTTGTGGGTTCGATTCTCATAG-T
586 GACTCGA-CTACCTA-A----AT--C-ATTAACTTCTTCT-GTTGTCTTTTC--TT-T-ATCGTT
*
3332322 GGGCG
637 GGG-T
* * ** ***** * **** ** * * * ****
3332327 GTCACTT-T-GCA-C---TCTCTTTTGCCATTT-CCTCTTTGCTT-G-ATTATTCCACAATCGGA
1 GT-AGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATT-TTCTATAATATTT
* *** ** * *****
3332383 TA-ATTCTGCATATTTTGAAATGTT-TATAGCA-TG-TCA-TCTGTTTGCCTTGGTAAAATGGAT
64 TAGATTC--C-GATTTTGTCTTGTTGT-T--CATTGTTCAGAATTTTTGAAGACG-AAAA-GG--
** * * * * * * * * *
3332443 CCCTGTGTTTGACACGACTACCTAAATCATTAACTTC-TTTTGTTGTCTTTTCTTTATCGTTGGG
119 CCCT-TG---G-CGTGTC-A-TTTACTCA--AGC-TCATTCT-TAG--ATTTATTTA---TT--G
** * ** * * *** * ** ** * *
3332507 TGTAGTTATAGAAACGGGGATCATG-A-ACCGTTTAAGGAT--A-AG-ATTGGTATTTTCTATAA
166 AATA-TTATTG----GGCAATGA-GCACACC-TTTTACTTTCCACAGTAAT-AAAAGTTC-GT-G
*** ** * * * * *** ** * **** **
3332566 TATTTTAGATTC--CTATTTTGTCTTGTTG-TTCATTGTTCAGAATTTTTGAAGACGAAAAAGAC
221 GCGTTTAGGGTCGTCAACTTCGT-TTG-GGCTT--TTG-GGGGAAACTCTGATTTTG-CCAA-A-
** * * *** *** * * *
3332628 CTTGGCATGTC-A-TTT----ACTTAAGCTCA-TTCTTAGATTTATTTATTGAATATTA-TTGGG
278 CTTGGC---TCAAGTTTGGAAAAATAA-CT-ATTTC-AACAAGAAACCATTAAATA-AAGAT-GG
** * ** * ** * * * *** *
3332685 TAATGAGCACAC--CTTTTAC-T-TTCTGCAGTAACAAAAGTTC-GTGGTGTTTAG-GGTCGT--
335 -AAT-CCCA-ACGTCGTGGACATATT-TGTAGTGCCAATA-TTCACT-ATG-TTAGACCACTTAA
* ** ** * * * *
3332742 C-AA-CTTCGT-TTGGGCT--TTTGGGGGAAACTC-T-GATTTT-GCCAAACT-TGGCTCAAGTT
393 CGAAGC--CGTCTT-AGCTCAGCTGGTAG-AGCGCATGGCTTTTAACC--A-TGTGG-TC--G-T
* **** ** * ** ** * ** * * ***** * * ** *
3332798 TGGAAAAATAACTA-TTTCAACAAGAAAC-CATTAAATAAAGATAG-AATCCCAACGTCGTGGAC
447 GGGTTCGATTCCCACAGTCGGC-GGTCACTC-TTCACTCTCTTTTGCCATTTC--C-TCGTTG-C
* ** * * * ** * * *
3332860 ATATTTGTAGTGCCAATATTC-AC-TATGTTAGACCACT-TAACGAAGC-CGTC-T-TAGCTTAG
506 -T-TGTGTAAAG---ATATTCTGCATAT-TTTGA--AATGT-TTGTAGCATGTCATCT-G-TTTG
* * * ** * * * ** *
3332919 -C-TGGTAGAGCGCAT-GACTTTTAACCATGTGGTCGTGGGTTCGAAT-CCCACAGTCGGCGGTC
560 CCTTGGTA-A---AATGGA----T--CCCTGT-GT--TTGACTCGACTACCTA-AAT---CATTA
** * * **
3332980 AC-TCTTC-ACTCTCTTTTGCCATTTCCTCGTTGCTT
608 ACTTCTTCTGTTGTCTTTT--C-TTT-ATCGTTGGGT
* ** * * ** * * * *** ** *
3333015 GATTGTTCCACAATCGGATAATTATGCATATTTTGAAATGTTTGTAGCA-T-GTCATCTGTTCTC
1 G-TAGTTATAGAAGCGG-GGATCAGGAACCGTTT--AA-GGAT-AAG-ATTGGT-AT-T-TTCT-
* ** *** * * ** * ** * * *** * ** *
3333078 CTTGGTAAAATGGATCCCTG-TGTTTAACTCG-ACTACCTAAATCATTAACTTCTTCTGTTGTCT
55 -ATAATATTTTAGATTCC-GAT-TTTGTCTTGTTGTTCATTGTTCA-GAA-TT-TT-TGAAGAC-
******** * *
3333141 TTTCTTTATCCTTGG-GTGT-AGTTATAGAAGCGGGGATCAAGAAC-CGTT-TAAGGATAATTGA
112 -GAAAAGGCCCTTGGCGTGTCA-TT-T---A-C-----TCAAG--CTCATTCTTA-GAT--TT-A
* * * *** * ***** * * * * * *
3333202 TATTTTCTATAATATT-TTAGATTACGATTTTGTCTTGTTGTTCATTGTTCATAATTTTTGAAGA
159 T-TTAT-T-GAATATTATTGGGCAATGA-GCACACCT-TT-TAC-TT-TCCA-CA---GT-AATA
** * ** * ** * ****
3333266 CGAAAGGCCTTGGCGTGTTA-TTTAC--CAAGC-TC-ATTCAGATTTATTATTG-AA---T-ATT
211 --AAAGTTCGTGGCGT-TTAGGGT-CGTCAA-CTTCGTTTGGGCTTT-TGGGGGAAACTCTGATT
* * ** * * ** ***
3333321 ATTGGC-AA--TGAGCACACCTTT-------T-AC--TTTCCAC-AGTATAA-AAGTT-TGTGGC
270 -TTGCCAAACTTG-GCTCAAGTTTGGAAAAATAACTATTTCAACAAG-A-AACCA-TTAAATAAA
* * * * * * ** ** *
3333370 GTTTAGG-GTCGTCAACTTCGTTGG-CTTTTGGGGAAACTCTGATTTTGCCAA-ACTTGGCTCAA
330 G-AT-GGAATC-CCAACGTCG-TGGAC--------ATA-TTTG-TAGTGCCAATA-TTCACT-AT
* * * * * ** * * * * * *
3333432 GTTTGAAAAATAACTATTTCAACAAGAAACC--ATTAAATAAAGATGG-A-ATCCCAATGTC-GT
379 G-TT-----A-GACCACTT-AAC--GAAGCCGTCTTAGCT-CAGCTGGTAGAGCGC-ATGGCTTT
** * * * * * * * * * **
3333492 GGA-CATAT--TTGT-AGTGCCAATAT-TCACTATGTTAGAC---CACT-TAACGAAGCGTCTTA
432 TAACCATGTGGTCGTGGGT-TCGAT-TCCCAC-A-G-TCGGCGGTCACTCT-TC-ACTC-TCTT-
*** **** * ** * ** * ** * * *
3333548 GCTTAGCTGGTAGAGCGCATGACTT-T-TAACCATGTGGT-CGTGGGTTCGAATCCCACAG-TCG
488 --TT-GCCATTTCCTCG-TTG-CTTGTGTAAAGATATTCTGCAT-ATTTTGAA----A-TGTTTG
** * * ** * ** * * * * **
3333609 CGGTCACTCTTCACTCTCTTTTGCCTT--T--CCTCG-TTGCT-TGATTG-TTCCACAATCGGAT
542 TAG-CA-T-GTCA-TCT-GTTTGCCTTGGTAAAATGGATCCCTGTGTTTGACTCGACTA-CCTA-
* * * * * **
3333667 AATTATGCATA-TT-TT-TGAATGT-TTGTAGCATGTCATCTGTTTGCCT
600 AATCAT-TA-ACTTCTTCTG-TTGTCTT-T-TC-T-TTATC-G-TTGGGT
* * * * * ** ** *** * * * **
3333713 -TGGTAAAATGATCA-CTGTG-T-TTG-ACTCGACTACCTA-AATCATT--AACTTCTTCTGTTG
1 GTAGTTATA-GA--AGCGGGGATCAGGAAC-CGTTTAAGGATAA-GATTGGTA-TT-TTCTATAA
* * * ** * * ** * ** *
3333770 TCTTTT--CTT--TATTGTTG-GGTGTAGTTAGAAGCGGGATCAGGAACCGTTT-AAGA-TAAGA
59 TATTTTAGATTCCGATT-TTGTCTTGTTGTT--CA--TTGTTCA-GAA-TTTTTGAAGACGAA-A
* ** ** * * * * * *
3333828 TTGG-TATTTTC-TATAATATT--TTAGATTCTGATTTTGTCTGTTG-TTTATTGT-TTCAGAAT
116 -AGGCCCTTGGCGTGTCAT-TTACTCA-A-GCTCA---T-TCT-TAGATTTATT-TATT--GAAT
* * * * *
3333887 -TT-TTGAAGACAAAGAG-GC-CCTTGGCGTGT-CATTTACTCA-AGCTCATTATTAGATTTATT
169 ATTATTG--GGCAATGAGCACACCTT----T-TAC-TTT-C-CACAG-T-A--A-TA-A--AAGT
** ** ** * * * ** **** *
3333946 TATTGAATAGTATT-GGGTTATGAGCAC-ACCTTT-TACTTTCCATAGTAATAAAAGTTCATGGC
216 TCGTG--GCGT-TTAGGGTCGTCA--ACTTCGTTTGGGCTTT---T-G-GGGGAAA-CTC-T---
*** *** *** * * ** *** *
3334008 GTATAAGGCGTC-AACTTCATTTGGGCTTTTGGGGAAACT--CTTATTTTGCCAAACTTGGCTCA
266 G-ATTTTGC--CAAACTTGGCTCAAG--TTT-GGAAAAATAAC-TA-TTT--C-AACAAGAAACC
** ** * ** * ** * * ** * * * **
3334070 AGTTTGGAAAAATAACTATTCAAACAAGAAAC--CATTAATAAAGATGAAATCCCAACGTAGTGG
320 A--TT----AAATAAAGATGGAATC--CCAACGTCGTGGACATATTTGTAGTGCCAA--TA-TTC
* * * * ** * * * * * *
3334133 ACATATTTGTAGTTCCA-ATATTC--A-CTATATTA---CACCT--TA-A-TG-AAGCCGTCTTA
374 AC-TATGT-TAG-ACCACTTA-ACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGC-TTTTA
* * ** * * *** * * * **
3334186 GCTCA-GTTGGT-ATAGCGCATGGCTTTTAACTATGT-GGTCGTGGTTCGATTC-CCAC-ATCGA
434 AC-CATG-TGGTCGT-G-GGTTCGATTCCCAC-A-GTCGG-C--GG-TC-ACTCTTCACTCTCTT
** * * *** * *
3334246 CGGTCACTCTTCACTC---CCTT-T-T-GCCAT-TTCCT-CGT-TGCTTGGAAAAT-TTTG-A--
488 TTGCCA-T-TTC-CTCGTTGCTTGTGTAAAGATATT-CTGCATAT--TTTG-AAATGTTTGTAGC
** * * * * * * * * * *
3334298 AT-T--T-TGAAATG--TTTGTAGAATGTCATCTGCT-TGCCTTGGTAAATGGA-TCCCT--GTG
546 ATGTCATCTG-TTTGCCTTGGTAAAATG-GATC-CCTGTG--TT--TGACTCGACTACCTAAATC
* * * * *** ** * *
3334353 TTTGACTCGACTACCT-AAATCATTAACTTTTTC--TGTGT
604 ATTAACT--TCT-TCTGTTGTC-TTTTCTTTATCGTTGGGT
* ** * ** ** * * * ** * * * **
3334391 CTTTTCTTTATCATTGGGTGTAGTTTATGAACGGGGTCAGGA-ACG-TTAAGGATAGATTGGTAT
1 GTAGT-TATAGAAGCGGG-G-A--TCAGGAACCGTTTAAGGATAAGATT--GG-TA-TTTTCTAT
** * * * * * ** *
3334454 TTTCTATAATATT-TGAGATT-TCGATT-TTGTCTTGTTGTCATTGTTAAG-ATTTTTGAAGACG
57 AATATTTTAGATTCCGATTTTGTC--TTGTTG------T-TCATTGTTCAGAATTTTTGAAGACG
*
3334515 AAAAGGCCCTT-GCGTGTCATTTACTGAAGCTCATTCTTAGA-TTATTTATTG-A-A-TATTGGG
113 AAAAGGCCCTTGGCGTGTCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGG
* ** *
3334575 CAATGAGCAC-CCTTTTACTTTCCACAGAAATAAAAGTTTATGGCGTTTAGGTTCGTC-ACTTCG
178 CAATGAGCACACCTTTTACTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCG
* * * *
3334638 TTTGGGATTTTGGGGGAAACTCTGATGTCGCTAAACTTGGCTCAAGTTTGGAAAAATAACTATTT
243 TTTGGGCTTTTGGGGGAAACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTT
* *
3334703 CAA-AAGAAACCATTAAATAAAGATGTAATCCCAACGTCGTGGACATATTTGTA-TGACAATATT
308 CAACAAGAAACCATTAAATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATT
* * *
3334766 CACTATGTTAGACCA-TTAACGAAGTCCGTCTTAGATCAGCTGGTAGAGCACATGGCTTTTAACT
373 CACTATGTTAGACCACTTAACGAAG-CCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACC
* * *
3334830 ATGTGGTCAT-GG---GATTCCCACAGTCGACGATCACTCTTCACTCTC--TTGCCATTTCCTCG
437 ATGTGGTCGTGGGTTCGATTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCG
* *
3334889 TTACTTGATTGTTCCACAATAGATAATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTATT
502 TTGCTTG--TG-T----AA-AGAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTT
* * *
3334954 TGCCTTGGTAAAATAGATCCCTGTGTTTGACTCGACCACCTAAATCATTAATTTCTTCTGTTGTC
558 TGCCTTGGTAAAATGGATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTC
3335019 TTTTCTTTATCGTTGGGT
623 TTTTCTTTATCGTTGGGT
*
3335037 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTAT-A-ATTTGA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* * * *
3335100 -ATTCCAATTTTGTCCTGTTGTTCATTGTTAAGAATTTTTAAAAGACGAAAAGGCCCTTGGCGTG
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTT-GAAGACGAAAAGGCCCTTGGCGTG
* *
3335164 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTGTTGGGCAAT--G-ATACC-TTT
130 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTT
* * ** * * *
3335225 ACTTTCCATAGAAACCAAAGTTCGTGGCATTTAGGGTCTTCAACTTCGTTTGGGCTTTTGGGGAA
195 ACTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGA
*
3335290 AACTCTTATTTTGCCAAACTTGG-TCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
260 AACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
* ** *
3335354 AT--AGGTGGAATTTCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTAAGTTAAGACCAC
325 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTT-AGACCAC
*
3335417 TTAACGAAGCCGTCATAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATG-GGTCGTGGGTTCG
389 TTAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCG
** * * ** * * * *
3335481 ATTTAGCATGTCA-TCTGTTTGCCTTGGTAAAATGGATC-CTGT-GTTTGACTCGACTACCTAAA
454 A-TTCCCA---CAGTC-G---G-C--GGT-CACT-CTTCACTCTCTTTTG-C-C-ATTTCC----
* * * * * * * * ** * * * ** *
3335543 TCATTAATTCTTCTGT--TG-TCTT-TTCTTATCGTTG-GGTGTAGTTATAGAAGCGGGGATCAG
499 TC-GT--TGCTTGTGTAAAGATATTCTGCATAT-TTTGAAATGT--TTGTAGCA--TGTCATCTG
*** ** *
3335603 -GAACCGTT--T--AA-GGAT--AAGATGTTTGACTCGACTACCT-AATCATTAATTTC-TCTGT
556 TTTGCC-TTGGTAAAATGGATCCCTG-TGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGT
3335658 TGT-TTTTCTTTATCGTTGGGT
619 TGTCTTTTCTTTATCGTTGGGT
3335679 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTA-TTTCTATAAT-TTTTG
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTT-
* * *
3335742 AAATT-CGATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTAAAGACGAAAAGGCCCTTGGCGTG
65 AGATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTG
* *
3335806 TCATTTATTCAAGCTCATTCTTAGATTTATTTATT-ATAAATTATTGGGCAATGAGCACACCTTT
130 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGA-ATATTATTGGGCAATGAGCACACCTTT
* * ** * * **
3335870 TACTTTCCATAGAAACCAAAGTTTGTGGCGTTTAGGGTCTTCAACTT--TTTGGGCTTTT-GGAA
194 TACTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGG
* * *
3335932 AAACT-T-ATTTTGCGAAACTTGGCACAAGTTTGGAAAAATAACTATTTCTACAAGAAACCATTA
259 AAACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTA
* * ** *
3335995 AATAAAGGTTGAATTTCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTAAGTTAGACCAC
324 AATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCAC
* * *
3336060 TTAACGAAGCCGTCATAGCTCAACTGGTAGAGCGCATGGATTTTAACCATGTGGTCGTGGGTTCG
389 TTAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCG
* * *
3336125 ATTCCCACAGTCGGCGGTTACTCTTCACTCTCTTTTTCCATTTCCTCGTTGCTTTATTGTTCCAC
454 ATTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGC-TT-GTG-T--A-
*
3336190 AATCGGATAATTCTGTATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGG
513 AA---GAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGG
* *
3336255 ATCCTTGTGTTTGACTCGACTACCTAAATCATTAACATCTTCTGTTGTCTTTTCTTTATCGTTGG
574 ATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGG
3336320 GT
639 GT
* *
3336322 GTAGTTATAGAAACGGGGATCAGGAACCGTTTAAGGATAAAATTGGTATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* * * *
3336387 GATTCCAATTTTTTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAATGCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
3336452 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
* *
3336517 CTTTCCATAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACATC------G--TTTGGGGGAA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
*
3336574 ACTCTGAATTTT-CCAAACTTGGCTCAAGTTAGGAAAAATAACTATTTCAACAAGAAACCATTAA
261 ACTCTG-ATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
*
3336638 ATAAAGATGGAATCCCAACTTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACT
325 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACT
* * *
3336703 TAATG-AGACAGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCATGGGTTCG
390 TAACGAAG-CCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCG
** * * * * * *
3336767 ATTCTTATAGTGGGCGGTCACTCTGCACTCTCTTTTGCTATTTCCTCTTTGCTTGATTATTCCAC
454 ATTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--T-GT--A-
* *
3336832 AATCGGATAATTCTGCATATTTTGAAATGTTTATAGCATGTCATCTATTTGCCTTGGTAAAATGG
513 AA---GAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGG
* *
3336897 ATCCCTGTGTTTGACACGACTACCTAAATCATTAACTTCTTTTGTTGTCTTTTCTTTATCGTTGG
574 ATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGG
3336962 GT
639 GT
* *
3336964 GTAGTTATAGAAACGGGGATCAGGAACCGTTTAAGGATAAAATTGGTATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
** * * *
3337029 GATTCTAATTTTTTCCTGTTGTTCATTGTTCAGAATTTTTGGAGACGAAAAGGCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
3337094 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
* *
3337159 CTTTCCATAGTAATAAAAGTTCGTGGTGTTTAGGGTCGTCAA-TATCGTTTGGGCTTTTGGGGGA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACT-TCGTTTGGGCTTTTGGGGGA
*
3337223 AACTCTGATTTTGCCAAACTTTGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
260 AACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
* *
3337288 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCTAATATTAACTATGTTAGACCACT
325 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACT
* * *
3337353 TAATGAAGCTGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTTGA
390 TAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
* *
3337418 TTCCCACAGTCGGCGGTCACTCTTTACTTTCTTTTGCCA-----T--TT-C--------------
455 TTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGTGTAAAGATAT
* * *
3337461 T-T-C---TTTTGAAATGTTTATAGCATGTCATCTATTTGCCTTGGTAAAATGGATCCCTGCGTT
520 TCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTGTGTT
* *
3337521 TGACACGACTACCTAAATCATTAACTTCTTCTATTGTCTTTTCTTTATCGGTT-GGT
585 TGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATC-GTTGGGT
* * *
3337577 ATAGTTATAGAAACGGGGATCATGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* * * *
3337642 GATTCTGATTTTTTCTTGTTGTTCATTGTTAAGAATTTTTGAAGATGAAAAGGCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
* *
3337707 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATCT-GGTAATGAGCACACCTATT
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTAT-TGGGCAATGAGCACACCTTTT
* * * * *
3337771 ACTTTCCACAGAAACAAAAGTTTGTGGTGTTTAGGGTAGTCAACTTCGTTTGGGCTTTTGGGGGA
195 ACTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGA
*
3337836 AACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAAAAAGAAACCATTAA
260 AACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
3337901 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACT
325 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACT
3337966 TAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
390 TAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
* * *
3338031 TTCCCACAGTTGGCAGACACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCTTTA
455 TTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-----TA
* * * *
3338096 ATCGGATAATTATGCATATTTTGAAAAGTTTGTAGCATGTCATCCGTTTGCCTTGGTAAAATGGA
513 A--AGAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGA
*
3338161 TCCCTGTGTTTGACTCGACTACCTAAATTATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGG
575 TCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGG
3338226 T
640 T
*
3338227 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* * *
3338292 GATTCCGATTTTGTCTTGTTGTTCATT-TTCAGAATTTTTGAA-ATTGAAAAGTCCGTTGGCGTG
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGA-CGAAAAGGCCCTTGGCGTG
*
3338355 TCATTCACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTT
130 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTT
* *
3338420 ACTTTCCACAGTAATAAAAGTTCGTGGTGTTTAGGGACGTCAACTTCGTTTGGGCTTTTGGGGGA
195 ACTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGA
* * *
3338485 AACTCTAATTTTGCCAAACTTGGCTCATGTATGGAAAAATAACTATTTCAACAAGAAACCATTAA
260 AACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
* * *
3338550 ATAAAGATGGAATCCCAACGTCGAGGACATATTTGAAGTGCTAATATTCACTATGTTAGACCACT
325 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACT
*
3338615 TAACGAAGCCATCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
390 TAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
* * *
3338680 TTCCCACAGTCGGCGGGCAATCTTCAATCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCTTTA
455 TTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-----TA
* * * *
3338745 ATCGGATAATTCTGCATATTTTGAAATGTTTTTAGCATGTCATATGTTTCCCTTGGTAAAATGGA
513 A--AGAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGA
* * *
3338810 TCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTATTCTATTGTCTTTTCTTTATCATTGGG
575 TCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGG
3338875 T
640 T
* *
3338876 GTAGTTATAGAAGCAGGGATCAGGAACCGTTTAAGGATAAAATTGGTATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
** * * * *
3338941 GATTCTAATTTTTTCCTGTTGTTCATTGTTCAGAATTTTTGGAGACGAAAAGGCCCTTGGTGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
*
3339006 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGTGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
* * * * * *
3339071 CTTTCCGCAGTAATAAAAGTTCGTGGCATTTAGGGTCATCAACTTTGTTTGGGCTTTTTGGGGAG
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
* * ** *
3339136 ACACTGATTTTACCAAACTTTACTCATGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
261 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
* *
3339201 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTTCCAATATTCGCTATGTTAGACCACTT
326 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
*
3339266 AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTTGAT
391 AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
* ** * *
3339331 T-CCACAGTCTGCAATCACTCTTCACTCTCTTTTGCTATTTCCTGGTTGCTTGATTGTTCCACAA
456 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T--A-AA
* * *
3339395 TCGGATAATTCTGTATATTTTGAAATGTTTGTAGCATGTCATCTGTTTTCCTTGGAAAAATGGAT
515 ---GAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGAT
* *
3339460 CTCTGTGTTTGACACGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
576 CCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
* * * *
3339525 GTAGTTATAGAAACAGGGATCAAGAACCGTTTAAGGATAAGATTTGTATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
*
3339590 GATTCCTATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
*
3339655 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGTAATGAGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
* * * *
3339720 CTTTCCGCAGTAACAAAAGTTCGTGGTGTTTAAGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
*
3339785 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACTATTAAA
261 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
* * *
3339850 TAAAGATAGAATCCCAACGTCGTGGACATATTTGTAGTGACAATATTCACTATGTTAGACCATTT
326 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
* *
3339915 AACGAAGCCGTCTTAGATCAGTTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
391 AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
* * * * *
3339980 TCCCACAGTCGGCGATCACTCTTCACTCTCTTTTTCGAATTCCTCGTTACTTGATTGTTCCAAAA
456 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T----AA
* *
3340045 TCAGATAATTCTGCATATTTTGAAATATTTGTAGCATGTCATCTGTTTGCCTTAGTAAAATGGAT
514 --AGAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGAT
* * * *
3340110 CCCTATGTTTGACTCGACTACCTAAATCATTAATTTGTTCTATTGTCTTTTCTTTATCGTTGGGT
576 CCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
*
3340175 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* * *
3340240 -ATTCCGATTTTGTCATGTTGTTCATTGTTCAGAATTTTTAAAGTCGAAAAGGCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
*
3340304 GATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
* * *
3340369 CTTTCCACAGAAACT-AAAGTTCGTGGCGTTTAGGGTCGTCAACTTCATTTGGGCTTTTGGGGAA
196 CTTTCCACAGTAA-TAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGA
3340433 AACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
260 AACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
* *
3340498 ATAAAGATGGAATTCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTAAGTTAGACCACT
325 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACT
* * * * * *
3340563 AAACAAAGCCGTCATAGCTCAGTTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGAGTGTTCGA
390 TAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
* *
3340628 TTCCCACAGTTGGCGGTCACTCTTTACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTACACA
455 TTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T--A-A
3340693 ATCGGATAATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGA
514 A---GAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGA
*
3340758 TCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGACTTTTCTTTATCGTTGGG
575 TCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGG
3340823 T
640 T
* * *
3340824 GTAGTTATAAAAGCAGGGATCAGGAACCGTTTAAGGATAAAATTGGTATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
** * *
3340889 GATTCTAATTTTTTCCTGTTGTTCATTGTTCAGAATTTTTTG-AGACGAAAAGGCCCTTGGCGTG
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAA-TTTTTGAAGACGAAAAGGCCCTTGGCGTG
3340953 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTT
130 TCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTT
* * * * *
3341018 ACTTTTCATAGTAACAAAAGTTCGTGGCATTTAGGGTCGTCAA-TATTGTTTGGGCTTTTGGGGG
195 ACTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACT-TCGTTTGGGCTTTTGGGGG
*
3341082 AAACTATGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTA
259 AAACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTA
*
3341147 AATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCTC
324 AATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCAC
* *
3341212 TAAATGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCG
389 TTAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCG
* * * * *
3341277 ATTCCCACAGTCGGCAGTCACTCTTCACTCCCTTTTGCCATTTCCTCTTTGTTTGATTATTCCAC
454 ATTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--T-GT--A-
*
3341342 AATCGGATAATTCTGCATATTTTGAAATGTTTATAGCATGTCATCTGTTTGCCTTGGTAAAATGG
513 AA---GAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGG
*
3341407 ATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGACTTTTCTTTATCGTTGG
574 ATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGG
3341472 GT
639 GT
*
3341474 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAAATTGGTATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
** * * *
3341539 GATTCTAATTTTTTCCTGTTGTTCATTGTTCTGAATTTTTGAAGACG--AA----CTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
3341598 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
* * * *
3341663 CTTTCCATAGTAACAAAAGTTCGTGGCATTTAGGGTCGTCAA-TATCTTTTGGGCTTTTGGGGGA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACT-TCGTTTGGGCTTTTGGGGGA
* **
3341727 AACTATGATTTTGAAAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
260 AACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
*
3341792 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCTCT
325 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACT
* *
3341857 AAATGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
390 TAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
* * * * *
3341922 TTCCCACAGTCGGCAGTCACTCTTCACTCCCTTTTGCCATTTCCTCTTTGTTTGATTATTCCACA
455 TTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--T-GT--A-A
*
3341987 ATCGGATAATTCTGCATATTTTGAAATGTTTATAGCATGTCATCTGTTTGCCTTGGTAAAATGGA
514 A---GAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGA
* * *
3342052 TCCCTGTGTTTGACACGACTTCCGAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGG
575 TCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGG
3342117 T
640 T
* *
3342118 GTAGTTATAGAAACGGGGATTAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* * *
3342183 GATTCCTATTTTGTCTTGTTGTTTATTGTTCAGAATTTTTGAAGACAAAAAGGCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
* *
3342248 CATTTACTCAAGCTTATTCTTAGATTTATTTATTGAATATTATTGGGTAATGAGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
* * * * * *
3342313 CTTTCCGCAGTAACAAAAGTTCGTGGTGTTTAGGGTTGTCAACATCATTTGGGCTTTTGGGGGAA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
3342378 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
261 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
** *
3342443 TAAAGATATAATCCCAACGTCGTTGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
326 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
*
3342508 AACGAAGCCATC-TAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
391 AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
* * *
3342572 TCCCACAGTCGGCGGGCACTCTTCACTCTCTTTTTCCATTTCCTCGTTGCATGATTGTTCTATAA
456 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGC----TTG-TGTA-AA
*
3342637 TCGGATAATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATTGAT
515 ---GAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGAT
* * *
3342702 CCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTATATTATCTTTTCTTTATCGTTGGGT
576 CCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
3342767 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
* * *
3342832 GATTCCAATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGATGAAATGGCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
* *
3342897 CATTTACTCAAGCTCATTATTAGATTTATTTATTGAATATTATTGGGAAATGAGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
*
3342962 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGAGCTTTTGGGGGAA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
*
3343027 ACTCTGATTTTGCCAAACGTT-GCTCATGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
261 ACTCTGATTTTGCCAAAC-TTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAA
*
3343091 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCTAATATTCACTATGTTAGACCACT
325 ATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACT
* * *
3343156 TAACGAAGCCGTCTTCGCTCAGTTGGTAGAGCGCATGCCTTTTAACCATGTGGTCGTGGGTTCGA
390 TAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGA
* * *
3343221 TTCCCACAGTCGGCGGTCACTCTTCACTTTCATTTGCCATTTCCTCTTTGCTTGATTGTTCCACA
455 TTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T----A
** * *
3343286 ATCAGATAATTCTGCATATTTTGAAATGTTCATAGCATGTCATCTGTTTTCCTTAGTAAAATGGA
513 A--AGAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGA
* * * *
3343351 TCCATGCGTTTGACACGACTACCTAAATCATTAACTTCTTCTGTTGTATTTTCTTTATCGGTT-G
575 TCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATC-GTTGG
3343415 GT
639 GT
*
3343417 GTAGTTATAGAAACGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
1 GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
*
3343482 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGATGAAAAGGCCCTTGGCGTGT
66 GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
*
3343547 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGTAATGAGCACACCTTTTA
131 CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
* * * * *
3343612 CTTTCCACAGTAACAAAAGTTCGTGGTGTTTAGGGTAGTCAACTTCGTTTGGGCCTTTGGTGGAA
196 CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
3343677 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
261 ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
*
3343742 TAAAGATGGAATCCCAACGTCGTGGATATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
326 TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
* * * *
3343807 AACGAATCCGTCTTTGCTCAGCTGGTAGAACGCATGGCTTTTAACCATGTGGTCGTGGGATCGAT
391 AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
*
3343872 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTTCCATTTCCTCGTTGCTTGATTGTTCCACAA
456 TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTG--TG-T--A-AA
3343937 TCGGATAATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGAT
515 ---GAT-ATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGAT
3344002 C
576 C
3344003 TGTAACATCC
Statistics
Matches: 15765, Mismatches: 2045, Indels: 1935
0.80 0.10 0.10
Matches are distributed among these distances:
613 568 0.04
614 5 0.00
616 1 0.00
617 1 0.00
618 2 0.00
620 2 0.00
621 1 0.00
623 167 0.01
624 40 0.00
625 24 0.00
626 40 0.00
627 6 0.00
628 1 0.00
629 10 0.00
630 19 0.00
631 24 0.00
632 25 0.00
633 72 0.00
634 126 0.01
635 1256 0.08
636 50 0.00
637 38 0.00
638 281 0.02
639 47 0.00
640 57 0.00
641 97 0.01
642 786 0.05
643 205 0.01
644 845 0.05
645 220 0.01
646 78 0.00
647 86 0.01
648 60 0.00
649 2504 0.16
650 6140 0.39
651 643 0.04
652 20 0.00
653 24 0.00
654 28 0.00
655 34 0.00
656 48 0.00
657 27 0.00
658 28 0.00
659 32 0.00
660 26 0.00
661 29 0.00
662 23 0.00
663 34 0.00
664 16 0.00
665 11 0.00
666 16 0.00
667 11 0.00
668 8 0.00
669 18 0.00
670 7 0.00
671 22 0.00
672 30 0.00
673 25 0.00
674 13 0.00
675 13 0.00
676 11 0.00
677 21 0.00
678 16 0.00
679 19 0.00
680 15 0.00
681 11 0.00
682 28 0.00
683 12 0.00
684 22 0.00
685 8 0.00
686 15 0.00
687 16 0.00
688 18 0.00
689 35 0.00
690 31 0.00
691 14 0.00
692 31 0.00
693 18 0.00
694 9 0.00
695 14 0.00
696 28 0.00
697 22 0.00
698 18 0.00
699 15 0.00
700 10 0.00
701 13 0.00
702 20 0.00
703 15 0.00
704 22 0.00
705 19 0.00
706 26 0.00
707 25 0.00
708 15 0.00
709 6 0.00
710 12 0.00
711 14 0.00
712 11 0.00
713 17 0.00
714 9 0.00
715 8 0.00
716 6 0.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.37
Consensus pattern (640 bp):
GTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTTA
GATTCCGATTTTGTCTTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGT
CATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTA
CTTTCCACAGTAATAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAA
ACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAA
TAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTT
AACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGAT
TCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGTGTAAAGATATT
CTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTGTGTTT
GACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGT
Found at i:3335694 original size:99 final size:100
Alignment explanation
Indices: 3335522--3335721 Score: 361
Period size: 99 Copynumber: 2.0 Consensus size: 100
3335512 ATGGATCCTG
3335522 TGTTTGACTCGACTACCTAAATCATTAATTCTTCTGTTGTCTTTTCTTATCGTTGGGTGTAGTTA
1 TGTTTGACTCGACTACCTAAATCATTAATTCTTCTGTTGTCTTTTCTTATCGTTGGGTGTAGTTA
3335587 TAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGA
66 TAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGA
3335622 TGTTTGACTCGACTACCT-AATCATTAATT-TCTCTGTTGT-TTTTCTTTATCGTTGGGTGTAGT
1 TGTTTGACTCGACTACCTAAATCATTAATTCT-TCTGTTGTCTTTTC-TTATCGTTGGGTGTAGT
3335684 TATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGA
64 TATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGA
3335721 T
1 T
3335722 TGGTATTTCT
Statistics
Matches: 98, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
98 6 0.06
99 74 0.76
100 18 0.18
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.38
Consensus pattern (100 bp):
TGTTTGACTCGACTACCTAAATCATTAATTCTTCTGTTGTCTTTTCTTATCGTTGGGTGTAGTTA
TAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGA
Found at i:3344843 original size:64 final size:64
Alignment explanation
Indices: 3344763--3344900 Score: 181
Period size: 64 Copynumber: 2.2 Consensus size: 64
3344753 TTGAAGGTGT
** ** * *
3344763 ATCGATGCATTGGTAGTGCATCGATGCA-CTCTTTTAA-AATAAATACATCGAATGCAATTCGTG
1 ATCGATGCATAAGTAGTGCATCGATGCATC-CCATTAATAAGAAA-ACATCGAATGCAATTAGTG
3344826 C
64 C
*
3344827 ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGGAAACATCGAATGCAATTAGTGC
1 ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCAATTAGTGC
3344891 ATCGATGCAT
1 ATCGATGCAT
3344901 CCCAATAATA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
64 60 0.92
65 5 0.08
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (64 bp):
ATCGATGCATAAGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCAATTAGTGC
Found at i:3345451 original size:2 final size:2
Alignment explanation
Indices: 3345446--3345497 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
3345436 ATGTATATGT
3345446 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3345487 TA TA TA TA TA T
1 TA TA TA TA TA T
3345498 GTTATATCGT
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3345784 original size:21 final size:21
Alignment explanation
Indices: 3345759--3345801 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
3345749 AAAGAATATA
3345759 TTGTATAA-GCTCTGAATAATT
1 TTGTA-AATGCTCTGAATAATT
* *
3345780 TTGTAAATGTTTTGAATAATT
1 TTGTAAATGCTCTGAATAATT
3345801 T
1 T
3345802 AAATGTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.49
Consensus pattern (21 bp):
TTGTAAATGCTCTGAATAATT
Found at i:3348379 original size:64 final size:65
Alignment explanation
Indices: 3348309--3348518 Score: 207
Period size: 64 Copynumber: 3.3 Consensus size: 65
3348299 TCGATGCATT
** * * *
3348309 GGTAGTGCATCGATGCA-CTCTTTTAA-AATAAATACATCGAATGTAATTCGTGCATCAATGCAT
1 GGTAGTGCATCGATGCATC-CCATTAATAAGAAA-ACATCGAATGCAATTAGTGCATCAATGCAT
3348372 AA
64 AA
* *
3348374 -GTAGTGCATCGATGCATCCCATTAATAAGGAAACATCGAATGCAATTAGTGCATCGATGCATAA
1 GGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCAATTAGTGCATCAATGCATAA
* * * * * * * * *
3348438 GGCA-TGCATCGATGCATCCCAGTAATAATACAACATCGAATACATTTTA-TGCACCGATGCATC
1 GGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCA-ATTAGTGCATCAATGCATA
3348501 A
65 A
3348502 -GTAGTGCATCGATGCAT
1 GGTAGTGCATCGATGCAT
3348519 ACCTTCATTA
Statistics
Matches: 123, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
63 2 0.02
64 111 0.90
65 10 0.08
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (65 bp):
GGTAGTGCATCGATGCATCCCATTAATAAGAAAACATCGAATGCAATTAGTGCATCAATGCATAA
Found at i:3349313 original size:21 final size:21
Alignment explanation
Indices: 3349288--3349330 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
3349278 AAAGAATATA
3349288 TTGTATAA-GCTCTGAATAATT
1 TTGTA-AATGCTCTGAATAATT
* *
3349309 TTGTAAATGTTTTGAATAATT
1 TTGTAAATGCTCTGAATAATT
3349330 T
1 T
3349331 AAATGTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.49
Consensus pattern (21 bp):
TTGTAAATGCTCTGAATAATT
Found at i:3351892 original size:650 final size:650
Alignment explanation
Indices: 3349444--3352323 Score: 4874
Period size: 650 Copynumber: 4.4 Consensus size: 650
3349434 GGGTGTTACA
** *
3349444 GGATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCAATTGTCTTTTCTTTATCCTT
1 GGATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTT
* *
3349509 GGGTGTAGTTATAGAAGCGGGGATTAGGAACCGTTTAATGATAAGATTGGTATTTTCTATAATAT
66 GGGTGTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATAT
* *
3349574 TTTAGATTACGATTTTGTCTTGTTGTTCATTGTTCAGAACTTTTGAAGACGAAAAGGCCCTTGGC
131 TTTAGATTACGATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGC
*
3349639 GTGTCATTTACTCAAGCTCATTCATAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCT
196 GTGTCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCT
**
3349704 TTTACTTTCCACAGTAATAAAAGTTCGTGGCATTTAGGGTCGTCAACTTCGTTTTTGCTTTTGGG
261 TTTACTTTCCACAGTAATAAAAGTTCGTGGCATTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGG
* * *
3349769 GGAAACTCTGATTTTTCCAAACTTTGCTCAAGTTTGGAAAAATAACTATTTCAATAAGAAACCAT
326 GGAAACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCAT
* *
3349834 TAAATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGATC
391 TAAATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCTAATATTCACTATGTTAGACC
3349899 ACTTAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTT
456 ACTTAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTT
* * *
3349964 CGATTCCCACAGTCTGTGGTCACTCTTCACTCTCTTTTTCCATTTCCTCGTTGCTTGATTGTTCC
521 CGATTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCC
3350029 ACAATCGGATAATTATGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAAT
586 ACAATCGGATAATTATGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAAT
* * * *
3350094 AGATCCCTATGTTTGACTCGACTACCAAAATCATTAACTTCTTCTGGTGTCTTTTCTTTATCGTT
1 GGATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTT
* *
3350159 GGGTTTAGTTATAGAAGCGGGGATCAAGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATAT
66 GGGTGTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATAT
* * * * *
3350224 TTGAGATTCCGATTTTGTCGTGTTGTTCATT-TTCAGAATTTTTGAA-ATCGAAAAGTCCGTTGG
131 TTTAGATTACGATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGA-CGAAAAGGCCCTTGG
3350287 CGTGTCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACC
195 CGTGTCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACC
* **
3350352 TTTTACTTTCCACAGTAACAAAAGTTCGTGGTGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGG
260 TTTTACTTTCCACAGTAATAAAAGTTCGTGGCATTTAGGGTCGTCAACTTCGTTTGGGCTTTTGG
* *
3350417 GGGAAACTCTAATTTTGCCAAACTTGGCTCATGTTTGG-AAAATAACTATTTCAACAAGAAACCA
325 GGGAAACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCA
* *
3350481 TTAAATAAATATGGAATCCCAACGTCGTGGACATATTTGTAGTGCTAATATTCACTATGTTAGTC
390 TTAAATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCTAATATTCACTATGTTAGAC
*
3350546 CACTTAACGAAGTCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGT
455 CACTTAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGT
* *
3350611 TCGATTCCCACAATCGACGGTCACTCGTT-ACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTT
520 TCGATTCCCACAGTCGGCGGTCACTC-TTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTT
*
3350675 CCACAATCGGATAATTCA-GCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTACCTTGGTAA
584 CCACAATCGGATAATT-ATGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAA
3350739 AAT
648 AAT
* *
3350742 GGATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTATTATGTTGTCTTTTCTTTATCGTT
1 GGATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTT
*
3350807 GGGTGTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCCATAATAT
66 GGGTGTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATAT
* *
3350872 TTTAGATTACGATTTTGTCTTATTGTTCATTGTTCATTGTTCAGAATTTTTGAAGATGAAAAGGC
131 TTTAGATTACGATTTTGTC---CTG----TTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGC
3350937 CCTTGGCGTGTCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAG
189 CCTTGGCGTGTCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAG
* *
3351002 CACACCTTTTACTTTCCATAGTAATAAAAGTTCGTGGAATTTAGGGTCGTCAACTTCGTTTGGGC
254 CACACCTTTTACTTTCCACAGTAATAAAAGTTCGTGGCATTTAGGGTCGTCAACTTCGTTTGGGC
*
3351067 TTTTGGGGGAAACTCTGATTTTGCCAAACTTTGCTCAAGTTTGGAAAAATAACTATTTCAACAAG
319 TTTTGGGGGAAACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAG
* *
3351132 AAACCATTAAATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCTAATATTTATTATG
384 AAACCATTAAATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCTAATATTCACTATG
* * *
3351197 TTAGACCACTTAATGAAGCCGTTTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACTATGTGGTC
449 TTAGACCACTTAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTC
3351262 GTGGGTTCGATTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGA
514 GTGGGTTCGATTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGA
*
3351327 TTGTTCCACAATCGGATAATTATGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTGG
579 TTGTTCCACAATCGGATAATTATGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTG
3351392 GTAAAAT
644 GTAAAAT
* *
3351399 GGATCCATGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTATTGTCTTTTCTTTATCGTT
1 GGATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTT
** *
3351464 GGGTGTAGTTATAGAAGCGGGGATCAGGAAAAGTTTAAGGAGAAGATTGGTATTTTCTATAATAT
66 GGGTGTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATAT
3351529 TTTAGATTACGATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGC
131 TTTAGATTACGATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGC
3351594 GTGTCATTTACTCAAGCTCATTCTTAGATTTATTTATT-AATTATTATTGGGCAATGAGCACACC
196 GTGTCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAA-TATTATTGGGCAATGAGCACACC
* * * *
3351658 TTTTACTTTCCATAGTAATAAAAGTTTGTGGCATTTAGGGTTGTCAACTTTGTTTGGGCTTTTGG
260 TTTTACTTTCCACAGTAATAAAAGTTCGTGGCATTTAGGGTCGTCAACTTCGTTTGGGCTTTTGG
*
3351723 GGGAAACTCTGAGTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCA
325 GGGAAACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCA
*
3351788 TTAAATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTG-TCAATATTTACTATGTTAGA
390 TTAAATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCT-AATATTCACTATGTTAGA
* *
3351852 CCACTTAACGAAGCCATCTTAGCTCAGCTGGTAGAGCGCATAGCTTTTAACCATGTGGTCGTGGG
454 CCACTTAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGG
3351917 TTCGATTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTT
519 TTCGATTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTT
*
3351982 CCACAATCGGATAATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAA
584 CCACAATCGGATAATTATGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAA
3352047 AT
649 AT
* *
3352049 GGATCCATGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGCT
1 GGATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTT
* *
3352114 GGGTGTAGTTATAGAAGCGGGAATCAGGAACCGTTTAAGGATAATATTGGTATTTTCTATAATAT
66 GGGTGTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATAT
* * * * * *
3352179 TTGAGATTTCGATATTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAATGTCCGTTGGC
131 TTTAGATTACGATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGC
* * *
3352244 GTGTCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGTCAATGAGCGCACGT
196 GTGTCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCT
3352309 TTTACTTTCCACAGT
261 TTTACTTTCCACAGT
3352324 TGTAACACCC
Statistics
Matches: 2098, Mismatches: 114, Indels: 36
0.93 0.05 0.02
Matches are distributed among these distances:
648 409 0.19
649 191 0.09
650 880 0.42
651 4 0.00
654 2 0.00
655 9 0.00
656 191 0.09
657 412 0.20
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.38
Consensus pattern (650 bp):
GGATCCCTGTGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTT
GGGTGTAGTTATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATAT
TTTAGATTACGATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGC
GTGTCATTTACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCT
TTTACTTTCCACAGTAATAAAAGTTCGTGGCATTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGG
GGAAACTCTGATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCAT
TAAATAAAGATGGAATCCCAACGTCGTGGACATATTTGTAGTGCTAATATTCACTATGTTAGACC
ACTTAACGAAGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTT
CGATTCCCACAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCC
ACAATCGGATAATTATGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAAT
Found at i:3352771 original size:20 final size:20
Alignment explanation
Indices: 3352731--3352771 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
3352721 TTTGATCATG
*
3352731 ATATTTCAATATGCATGTAT
1 ATATTTCAATATGCATATAT
3352751 ATATTTC-ATATGACATATAT
1 ATATTTCAATATG-CATATAT
3352771 A
1 A
3352772 ATCAAGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (20 bp):
ATATTTCAATATGCATATAT
Found at i:3353315 original size:19 final size:19
Alignment explanation
Indices: 3353291--3353331 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
3353281 ATGTCTATGC
3353291 ATATCATATAACATATATA
1 ATATCATATAACATATATA
3353310 ATATCATATAACATATATA
1 ATATCATATAACATATATA
3353329 ATA
1 ATA
3353332 ACCTATACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.37
Consensus pattern (19 bp):
ATATCATATAACATATATA
Found at i:3353338 original size:19 final size:19
Alignment explanation
Indices: 3353295--3353338 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
3353285 CTATGCATAT
*
3353295 CATATAACATATATAATAT
1 CATATAACATATATAATAA
3353314 CATATAACATATATAATAA
1 CATATAACATATATAATAA
*
3353333 CCTATA
1 CATATA
3353339 CCCATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (19 bp):
CATATAACATATATAATAA
Found at i:3354038 original size:26 final size:27
Alignment explanation
Indices: 3354009--3354060 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
3353999 TCAACTTATC
3354009 AACTC-TTTTCCATAATTTCATATAAA
1 AACTCGTTTTCCATAATTTCATATAAA
** *
3354035 AACTCGTTTTCTTTAATTTCTTATAA
1 AACTCGTTTTCCATAATTTCATATAA
3354061 CTTCTTCATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.33, C:0.17, G:0.02, T:0.48
Consensus pattern (27 bp):
AACTCGTTTTCCATAATTTCATATAAA
Found at i:3356016 original size:649 final size:650
Alignment explanation
Indices: 3354416--3357452 Score: 5341
Period size: 650 Copynumber: 4.7 Consensus size: 650
3354406 GGATGTTACA
* *
3354416 ACAGTAACAAAAGTTCGTAGCGTTTAAGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAAACTCTG
1 ACAGTAACAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAAACTCTG
*
3354481 ATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAGGAAACCATTAAATAAAGA
66 ATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAATAAAGA
*
3354546 TGGAATCCCAACGTCGTTGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTTAACGAA
131 TGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTTAACGAA
* *
3354611 GCCGTCTTAGCTCACCTGGTAGAGCGCATGGCTTTTAACCATATGGTCGTGGGTTCGATTCCCAC
196 GCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCAC
*
3354676 AGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTATTCCACAATCGGAT
261 AGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCCACAATCGGAT
* *
3354741 AATTCTGCATATTTTGAAATATTTGTAGCATGTCATCTGATTGCCTTGGTAAAATGGATCCCTGT
326 AATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTGT
* * *
3354806 GTTTGACTCGACTACTTAAATCATTAACTTCTTCTGTTGTTTTTTCTTTATCGTTGGGTGTAGTC
391 GTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGTGTAGTT
*
3354871 ATAGAAGCGGGGATCAGGAACCATTTAAGGATAAGATTGGTATTTTCTATAATATTTGAGATTCC
456 ATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGAGATTCC
*
3354936 GATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCTTTGGCGTGTCATTTA
521 GATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGTCATTTA
*
3355001 CTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGGGCACACCTTTTACTTTCC
586 CTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTACTTTCC
* * *
3355066 ACAGTAATAAAAGTTCATGGTGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAAACTCTG
1 ACAGTAACAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAAACTCTG
* *
3355131 ATCTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCTACAAGAAACCATTAAATAAAGA
66 ATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAATAAAGA
* *
3355196 TGGAATCCCAACGTCGTGGACATATTTGTAGTTCCAATATTCACTATGTTAGACCACTTATCGAA
131 TGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTTAACGAA
* * *
3355261 GCCGTCTTAGCTCAACTGGTAGAGCGCATGGCTTTTAACCATGAGGTCGTGGGTACGATTCCCAC
196 GCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCAC
* **
3355326 AGCCGGCAATCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCCACAATCGGAT
261 AGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCCACAATCGGAT
*
3355391 AATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCTCTGT
326 AATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTGT
* * * * *
3355456 GTTTGACTCGACTACCAAAATCATTAACTTCTTATGTTATCTTTTCTTTATCGTTGGGTATAATT
391 GTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGTGTAGTT
*
3355521 ATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGAGATTCT
456 ATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGAGATTCC
* *
3355586 AATTTTTTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGTCATTTA
521 GATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGTCATTTA
* *
3355651 CTTAAGCTCATTCTTAGA-TTATTTATTGAATATTATTGGGCAATGAGCACACATTTTACTTTCC
586 CTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTACTTTCC
3355715 ACAGTAACAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAAACTCTG
1 ACAGTAACAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAAACTCTG
*
3355780 ATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAAATATTTCAACAAGAAACCATTAAATAAAGA
66 ATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAATAAAGA
* *
3355845 TGGAATACCAACGTCGTGGACGTATTTGTAGTGCCAATATTCACTATGTTAGACCACTTAACGAA
131 TGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTTAACGAA
* *
3355910 GCCGTCTTAGCTTAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCAATTCCCAC
196 GCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCAC
* * * *
3355975 AGTCGGCGGTTACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTCGATTGTTCCACGATCTGAT
261 AGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCCACAATCGGAT
* * *
3356040 AATTCTGCATATTTTGAAATGTTTGTTGCATGTCATATGTTTGCCTTGGTAAAATAGATCCCTGT
326 AATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTGT
*
3356105 GTTTGACTCGACTACCTAAATCATTAACTTCTTATGTTGTCTTTTCTTTATCGTTGGGTGTAGTT
391 GTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGTGTAGTT
3356170 ATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGAGATTCC
456 ATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGAGATTCC
* * *
3356235 GATTTTGTCCTGTTGTTCATTGTTCATAATTTTTGAAGATGAAAAGGCCCTTGGCATGTCATTTA
521 GATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGTCATTTA
3356300 CTCAAGCTCATTCTTAG----ATTTATTGAATATTATTGGGCAATGAGCACACCTTTTACTTTCC
586 CTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTACTTTCC
* * *
3356361 ACGGTATCAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTAGGGCTTTTGGGGGAAACTCTG
1 ACAGTAACAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAAACTCTG
3356426 ATTTTGCCAAACTTGGCTCATA-TTTGGAAAAATAACTATTTCAACAAGAAACCATTAAATAAAG
66 ATTTTGCCAAACTTGGCTCA-AGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAATAAAG
3356490 ATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTTAACGA
130 ATGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTTAACGA
* *
3356555 ATCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACTATGTGGTCGTGGGTTCGATTCCCA
195 AGCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCA
*
3356620 CAGTCGGCGGTCTCTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCCACAATCGGA
260 CAGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCCACAATCGGA
*
3356685 TAATTTTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTG
325 TAATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTG
* * *
3356750 TGTTTGACTCGACTACCTAAATCGTTAACTTCTTCTGTTGTCGTTTCTTTATCATTGGGTGTAGT
390 TGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGTGTAGT
*
3356815 TATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGAAATTC
455 TATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGAGATTC
3356880 CGATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGTCATTT
520 CGATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGTCATTT
*
3356945 ACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCATTGAGCACACCTTTTACTTTC
585 ACTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTACTTTC
3357010 C
650 C
3357011 ACAGTAACAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAAACTCTG
1 ACAGTAACAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAAACTCTG
3357076 ATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAATAAAGA
66 ATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAATAAAGA
3357141 TGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTTAACGAA
131 TGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTTAACGAA
* *
3357206 GTCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTTGTGGGTTCGATTCCCAC
196 GCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCAC
* *
3357271 AGAT-GACGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGATCCACAATCGGA
261 AG-TCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCCACAATCGGA
*
3357335 TAATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGAATCCCTG
325 TAATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTG
* *
3357400 TGTTTGACTCGACTACCTAAATCGTTATCTTCTTCTGTTGTCTTTTCTTTATC
390 TGTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATC
3357453 TTTGTGGATA
Statistics
Matches: 2262, Mismatches: 118, Indels: 14
0.94 0.05 0.01
Matches are distributed among these distances:
646 616 0.27
647 1 0.00
649 610 0.27
650 1034 0.46
651 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (650 bp):
ACAGTAACAAAAGTTCGTGGCGTTTAGGGTCGTCAACTTCGTTTGGGCTTTTGGGGGAAACTCTG
ATTTTGCCAAACTTGGCTCAAGTTTGGAAAAATAACTATTTCAACAAGAAACCATTAAATAAAGA
TGGAATCCCAACGTCGTGGACATATTTGTAGTGCCAATATTCACTATGTTAGACCACTTAACGAA
GCCGTCTTAGCTCAGCTGGTAGAGCGCATGGCTTTTAACCATGTGGTCGTGGGTTCGATTCCCAC
AGTCGGCGGTCACTCTTCACTCTCTTTTGCCATTTCCTCGTTGCTTGATTGTTCCACAATCGGAT
AATTCTGCATATTTTGAAATGTTTGTAGCATGTCATCTGTTTGCCTTGGTAAAATGGATCCCTGT
GTTTGACTCGACTACCTAAATCATTAACTTCTTCTGTTGTCTTTTCTTTATCGTTGGGTGTAGTT
ATAGAAGCGGGGATCAGGAACCGTTTAAGGATAAGATTGGTATTTTCTATAATATTTGAGATTCC
GATTTTGTCCTGTTGTTCATTGTTCAGAATTTTTGAAGACGAAAAGGCCCTTGGCGTGTCATTTA
CTCAAGCTCATTCTTAGATTTATTTATTGAATATTATTGGGCAATGAGCACACCTTTTACTTTCC
Found at i:3357555 original size:22 final size:21
Alignment explanation
Indices: 3357517--3357569 Score: 79
Period size: 22 Copynumber: 2.5 Consensus size: 21
3357507 GTAAAAGTTG
*
3357517 GTTACTGTTATCCAAAAAAAC
1 GTTACTATTATCCAAAAAAAC
3357538 GTTACTATTATCCAAAAAAAAC
1 GTTACTATTATCC-AAAAAAAC
*
3357560 GTCACTATTA
1 GTTACTATTA
3357570 GTCCCACGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 12 0.41
22 17 0.59
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (21 bp):
GTTACTATTATCCAAAAAAAC
Found at i:3358941 original size:21 final size:21
Alignment explanation
Indices: 3358915--3358955 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
3358905 GACTATCTCA
3358915 TTGCGATTTCCCAAATTCGCG
1 TTGCGATTTCCCAAATTCGCG
* *
3358936 TTGCGATTTTCCTAATTCGC
1 TTGCGATTTCCCAAATTCGC
3358956 AATGCGAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.27, G:0.17, T:0.39
Consensus pattern (21 bp):
TTGCGATTTCCCAAATTCGCG
Found at i:3358961 original size:21 final size:21
Alignment explanation
Indices: 3358916--3358962 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
3358906 ACTATCTCAT
**
3358916 TGCGATTTCCCAAATTCGCGT
1 TGCGATTTCCCAAATTCGCAA
* *
3358937 TGCGATTTTCCTAATTCGCAA
1 TGCGATTTCCCAAATTCGCAA
3358958 TGCGA
1 TGCGA
3358963 ATACGTAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TGCGATTTCCCAAATTCGCAA
Found at i:3358977 original size:20 final size:20
Alignment explanation
Indices: 3358952--3359045 Score: 134
Period size: 20 Copynumber: 4.7 Consensus size: 20
3358942 TTTTCCTAAT
3358952 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
3358972 TCGCAACGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
* * *
3358992 TCGCAACGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
3359013 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
3359033 TCGCAATGCGAAT
1 TCGCAATGCGAAT
3359046 CTGACTATCG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
20 48 0.74
21 17 0.26
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:3358983 original size:41 final size:40
Alignment explanation
Indices: 3358952--3359045 Score: 134
Period size: 41 Copynumber: 2.3 Consensus size: 40
3358942 TTTTCCTAAT
*
3358952 TCGCAATGCGAATACGTAAATCGCAACGCGATTACGTAAA
1 TCGCAATGCGAATACGAAAATCGCAACGCGATTACGTAAA
* * * *
3358992 TCGCAACGCGAATTAGGAAAATCGCAATGCGAATACGTAAA
1 TCGCAATGCGAA-TACGAAAATCGCAACGCGATTACGTAAA
3359033 TCGCAATGCGAAT
1 TCGCAATGCGAAT
3359046 CTGACTATCG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 12 0.26
41 35 0.74
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (40 bp):
TCGCAATGCGAATACGAAAATCGCAACGCGATTACGTAAA
Found at i:3359642 original size:19 final size:19
Alignment explanation
Indices: 3359618--3359724 Score: 83
Period size: 19 Copynumber: 6.2 Consensus size: 19
3359608 ATGACTATTT
3359618 GCAACGAGAAATGAAAATC
1 GCAACGAGAAATGAAAATC
3359637 GCAACGAG--A-G--AATC
1 GCAACGAGAAATGAAAATC
3359651 GCAACGCA-AAATGAAAATC
1 GCAACG-AGAAATGAAAATC
* *
3359670 ACAACGAG----G-GAATC
1 GCAACGAGAAATGAAAATC
*
3359684 GCAACGCGAAATGAAAATC
1 GCAACGAGAAATGAAAATC
**
3359703 GCAACGAGAAACCAAAATC
1 GCAACGAGAAATGAAAATC
3359722 GCA
1 GCA
3359725 TTGCGATTTT
Statistics
Matches: 68, Mismatches: 8, Indels: 24
0.68 0.08 0.24
Matches are distributed among these distances:
14 20 0.29
15 2 0.03
16 2 0.03
17 2 0.03
18 2 0.03
19 40 0.59
ACGTcount: A:0.49, C:0.21, G:0.21, T:0.08
Consensus pattern (19 bp):
GCAACGAGAAATGAAAATC
Found at i:3359663 original size:33 final size:33
Alignment explanation
Indices: 3359618--3359711 Score: 145
Period size: 33 Copynumber: 2.8 Consensus size: 33
3359608 ATGACTATTT
3359618 GCAACG-AGAAATGAAAATCGCAACGAGAGAATC
1 GCAACGCA-AAATGAAAATCGCAACGAGAGAATC
* *
3359651 GCAACGCAAAATGAAAATCACAACGAGGGAATC
1 GCAACGCAAAATGAAAATCGCAACGAGAGAATC
*
3359684 GCAACGCGAAATGAAAATCGCAACGAGA
1 GCAACGCAAAATGAAAATCGCAACGAGA
3359712 AACCAAAATC
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
33 54 0.98
34 1 0.02
ACGTcount: A:0.48, C:0.20, G:0.23, T:0.09
Consensus pattern (33 bp):
GCAACGCAAAATGAAAATCGCAACGAGAGAATC
Found at i:3359742 original size:19 final size:19
Alignment explanation
Indices: 3359720--3359865 Score: 150
Period size: 19 Copynumber: 8.1 Consensus size: 19
3359710 GAAACCAAAA
*
3359720 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
3359739 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
3359753 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
3359772 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
3359791 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
3359805 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
3359824 TCCGCGTTGCGATTTTCATT
1 T-CGCGTTGCGATTTTCATT
*
3359844 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
3359864 TC
1 TC
3359866 AACCAAAAGA
Statistics
Matches: 106, Mismatches: 9, Indels: 24
0.76 0.06 0.17
Matches are distributed among these distances:
14 20 0.19
16 5 0.05
17 6 0.06
19 42 0.40
20 32 0.30
21 1 0.01
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:3359803 original size:52 final size:52
Alignment explanation
Indices: 3359720--3359857 Score: 222
Period size: 52 Copynumber: 2.6 Consensus size: 52
3359710 GAAACCAAAA
* **
3359720 TCGCATTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
3359772 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
*
3359824 TCCGCGTTGCGATTTTCATTCTCTCGTTGCGATT
1 T-CGCGTTGCGATTTTCATT-TCGCGTTGCGATT
3359858 TTCATTTCAA
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
52 50 0.62
53 18 0.22
54 12 0.15
ACGTcount: A:0.11, C:0.24, G:0.21, T:0.44
Consensus pattern (52 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATAGTCATT
Found at i:3361752 original size:94 final size:93
Alignment explanation
Indices: 3361565--3361940 Score: 544
Period size: 94 Copynumber: 4.1 Consensus size: 93
3361555 TAGATTGCTT
* * *
3361565 AGTAAATTTAATCGGTTGCTGCCAATACTGCTAAAC--TGT-TT-ATTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
3361626 ATTTGTCTTTTGTTTTGTCTTTTGGTTGA
66 ATTTGTC-TTTGTTTTGTCTTTTGGTTGA
* *
3361655 AGTAAATTTATTCGGTTGATGCCAATTCTGCTAAATTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
3361720 ATTTATCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
* * * * *
3361749 AGTAAATTTGTTTGGTTGCTGCCAATTCTGTTAAACTGTGTATTCTTTAACACAGTGAAGTTATT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
3361814 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
* * * * * *
3361843 AGTAAATTTGTTCGTTTGCTGCCAATTCTGCTAAACTGTATATTCTTTAATACTCTGAAGTTAAT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
3361908 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
3361936 AGTAA
1 AGTAA
3361941 TGCAATCCAT
Statistics
Matches: 259, Mismatches: 22, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
90 32 0.12
92 3 0.01
93 28 0.11
94 196 0.76
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (93 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGA
Found at i:3362058 original size:19 final size:19
Alignment explanation
Indices: 3362031--3362093 Score: 90
Period size: 19 Copynumber: 3.3 Consensus size: 19
3362021 TCTTTTGGTT
*
3362031 GAAATGAAAATCGCAACGC
1 GAAACGAAAATCGCAACGC
*
3362050 GAAACGAAAATCACAACGC
1 GAAACGAAAATCGCAACGC
*
3362069 GAAACCAAAAATCGCAACGC
1 GAAA-CGAAAATCGCAACGC
3362089 GAAAC
1 GAAAC
3362094 TATAATCGCG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
19 22 0.56
20 17 0.44
ACGTcount: A:0.51, C:0.25, G:0.17, T:0.06
Consensus pattern (19 bp):
GAAACGAAAATCGCAACGC
Found at i:3362081 original size:20 final size:20
Alignment explanation
Indices: 3362037--3362093 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
3362027 GGTTGAAATG
*
3362037 AAAATCGCAACGCGAAA-CG
1 AAAATCGCAACGCGAAACCA
*
3362056 AAAATCACAACGCGAAACCA
1 AAAATCGCAACGCGAAACCA
3362076 AAAATCGCAACGCGAAAC
1 AAAATCGCAACGCGAAAC
3362094 TATAATCGCG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 16 0.47
20 18 0.53
ACGTcount: A:0.51, C:0.28, G:0.16, T:0.05
Consensus pattern (20 bp):
AAAATCGCAACGCGAAACCA
Found at i:3362121 original size:19 final size:18
Alignment explanation
Indices: 3362099--3362162 Score: 55
Period size: 19 Copynumber: 3.7 Consensus size: 18
3362089 GAAACTATAA
3362099 TCGCGTTGCGATTTTAATT
1 TCGCGTTGCGATTTT-ATT
* *
3362118 TCGCATTGCGA---T-TC
1 TCGCGTTGCGATTTTATT
*
3362132 TCTCGTTGCGATTTTTATT
1 TCGCGTTGCGA-TTTTATT
3362151 TCGCGTTGCGAT
1 TCGCGTTGCGAT
3362163 AGTCATTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 11
0.67 0.12 0.22
Matches are distributed among these distances:
14 10 0.29
16 1 0.03
18 2 0.06
19 21 0.62
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.45
Consensus pattern (18 bp):
TCGCGTTGCGATTTTATT
Found at i:3362661 original size:21 final size:21
Alignment explanation
Indices: 3362637--3362703 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
3362627 TCATTCCTCG
3362637 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
3362658 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
3362679 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
3362700 AGAG
1 AGAG
3362704 CCCGATTCAT
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:3362661 original size:42 final size:42
Alignment explanation
Indices: 3362585--3362703 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 42
3362575 GACTCGCCTG
* * * * * * *
3362585 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
3362627 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* * *
3362669 TCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
3362704 CCCGATTCAT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 58 0.91
43 2 0.03
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.23
Consensus pattern (42 bp):
TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:3364071 original size:14 final size:14
Alignment explanation
Indices: 3364052--3364087 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
3364042 ATTGTTTAAT
3364052 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
3364066 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
3364080 TGATTTGT
1 TGATTTGT
3364088 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:3364216 original size:19 final size:20
Alignment explanation
Indices: 3364194--3364269 Score: 113
Period size: 19 Copynumber: 4.0 Consensus size: 20
3364184 AAAAATGACT
*
3364194 ATCGCAATGCGAAA-TAAAA
1 ATCGCAACGCGAAACTAAAA
*
3364213 ATCGCAACGCGAAA-TGAAA
1 ATCGCAACGCGAAACTAAAA
3364232 ATCGCAACGCGAAACT-AAA
1 ATCGCAACGCGAAACTAAAA
3364251 ATCGCAACGCGAAACTAAA
1 ATCGCAACGCGAAACTAAA
3364270 TTCGCGTTGC
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
19 50 0.94
20 3 0.06
ACGTcount: A:0.49, C:0.22, G:0.17, T:0.12
Consensus pattern (20 bp):
ATCGCAACGCGAAACTAAAA
Found at i:3364319 original size:33 final size:33
Alignment explanation
Indices: 3364274--3364399 Score: 218
Period size: 33 Copynumber: 3.8 Consensus size: 33
3364264 ACTAAATTCG
* *
3364274 CGTTGCG-TTTTCATTTCGCTTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
3364306 TGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
3364339 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
3364372 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
3364400 AGTCATTTTC
Statistics
Matches: 89, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
32 6 0.07
33 83 0.93
ACGTcount: A:0.11, C:0.24, G:0.19, T:0.46
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
Found at i:3364332 original size:19 final size:19
Alignment explanation
Indices: 3364308--3364419 Score: 100
Period size: 19 Copynumber: 6.4 Consensus size: 19
3364298 GATTCCCTTG
3364308 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
3364327 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
3364341 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
3364360 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
3364374 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
** *
3364393 TTGCGATAGTCATTTTCGCG
1 TTGCGATTTTCA-TTTCGCA
3364413 TTGCGAT
1 TTGCGAT
3364420 AGACATTAAG
Statistics
Matches: 75, Mismatches: 7, Indels: 21
0.73 0.07 0.20
Matches are distributed among these distances:
14 12 0.16
16 14 0.19
17 14 0.19
19 22 0.29
20 13 0.17
ACGTcount: A:0.13, C:0.22, G:0.20, T:0.45
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:3364346 original size:14 final size:14
Alignment explanation
Indices: 3364327--3364381 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
3364317 TCATTTCGCA
3364327 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
*
3364341 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
3364358 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
3364374 TTGCGATT
1 TTGCGATT
3364382 TTCATTTCGC
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 14 0.41
16 7 0.21
17 7 0.21
19 6 0.18
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:3364411 original size:20 final size:20
Alignment explanation
Indices: 3364386--3364426 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
3364376 GCGATTTTCA
*
3364386 TTTCGCATTGCGATAGTCAT
1 TTTCGCATTGCGATAGACAT
*
3364406 TTTCGCGTTGCGATAGACAT
1 TTTCGCATTGCGATAGACAT
3364426 T
1 T
3364427 AAGATGATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.39
Consensus pattern (20 bp):
TTTCGCATTGCGATAGACAT
Found at i:3366970 original size:24 final size:24
Alignment explanation
Indices: 3366936--3366989 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
3366926 CTGAAAAATC
3366936 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
3366960 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
3366984 ATCAAA
1 ATCAAA
3366990 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:3369386 original size:35 final size:35
Alignment explanation
Indices: 3369337--3369411 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
3369327 AAAATAATTC
3369337 AATTTAGGGATTAGAATATAATTGAAGTATTTTGG
1 AATTTAGGGATTAGAATATAATTGAAGTATTTTGG
* * *
3369372 AATTTAGGGTTTAGAATGTAATTGAAGTGTTTTGG
1 AATTTAGGGATTAGAATATAATTGAAGTATTTTGG
3369407 AATTT
1 AATTT
3369412 TGAACATGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (35 bp):
AATTTAGGGATTAGAATATAATTGAAGTATTTTGG
Found at i:3383114 original size:21 final size:20
Alignment explanation
Indices: 3383088--3383275 Score: 141
Period size: 21 Copynumber: 8.9 Consensus size: 20
3383078 AGTTTCCAGA
*
3383088 TTCGTTGCGA-TAGTCGAAG
1 TTCGTTGCGATTAGTCCAAG
*
3383107 TTCGCGTTGCGATTTATTCCAAG
1 TT--CGTTGCGA-TTAGTCCAAG
*
3383130 TTCGTTGCGA-TAGTCGAAG
1 TTCGTTGCGATTAGTCCAAG
* *
3383149 TTCGCGTTGCGATTTATTCCAAA
1 TT--CGTTGCGA-TTAGTCCAAG
*
3383172 TTCGTTGCGATTTATTCCAAG
1 TTCGTTGCGA-TTAGTCCAAG
* ** *
3383193 TTCGCGTTGCGATTTATTTTAAA
1 TT--CGTTGCGA-TTAGTCCAAG
3383216 TTCGTTGCGATTTAGTCCAAG
1 TTCGTTGCGA-TTAGTCCAAG
3383237 TTCGCGTTGCGA-TAGTCCAAG
1 TT--CGTTGCGATTAGTCCAAG
3383258 TTCGTTGCGA-TAGTCCAA
1 TTCGTTGCGATTAGTCCAA
3383276 AATCGCAACG
Statistics
Matches: 142, Mismatches: 15, Indels: 24
0.78 0.08 0.13
Matches are distributed among these distances:
19 27 0.19
21 72 0.51
23 43 0.30
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.37
Consensus pattern (20 bp):
TTCGTTGCGATTAGTCCAAG
Found at i:3383134 original size:42 final size:42
Alignment explanation
Indices: 3383081--3383275 Score: 259
Period size: 42 Copynumber: 4.6 Consensus size: 42
3383071 GCAAATCAGT
* *
3383081 TTCCAGATTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTA
1 TTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
* *
3383123 TTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTA
1 TTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
*
3383165 TTCCAAATTCGTTGCGATTTATTCCAAGTTCGCGTTGCGATTTA
1 TTCCAAATTCGTTGCGA--TAGTCCAAGTTCGCGTTGCGATTTA
**
3383209 TTTTAAATTCGTTGCGATTTAGTCCAAGTTCGCGTTGCGA--TA
1 TTCCAAATTCGTTGCGA--TAGTCCAAGTTCGCGTTGCGATTTA
* *
3383251 GTCCAAGTTCGTTGCGATAGTCCAA
1 TTCCAAATTCGTTGCGATAGTCCAA
3383276 AATCGCAACG
Statistics
Matches: 139, Mismatches: 12, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
40 8 0.06
42 71 0.51
44 60 0.43
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (42 bp):
TTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
Found at i:3383917 original size:11 final size:11
Alignment explanation
Indices: 3383901--3383937 Score: 65
Period size: 11 Copynumber: 3.3 Consensus size: 11
3383891 TCTCGTCTCG
3383901 GGTCGGGTCGT
1 GGTCGGGTCGT
3383912 GGTCGGGTCGT
1 GGTCGGGTCGT
3383923 GGTCGTGGTCGT
1 GGTCG-GGTCGT
3383935 GGT
1 GGT
3383938 AATACGTGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.00, C:0.16, G:0.54, T:0.30
Consensus pattern (11 bp):
GGTCGGGTCGT
Found at i:3383926 original size:6 final size:6
Alignment explanation
Indices: 3383901--3383937 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
3383891 TCTCGTCTCG
3383901 GGTCG- GGTCGT GGTCG- GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
3383938 AATACGTGTC
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 10 0.33
6 20 0.67
ACGTcount: A:0.00, C:0.16, G:0.54, T:0.30
Consensus pattern (6 bp):
GGTCGT
Found at i:3383928 original size:17 final size:16
Alignment explanation
Indices: 3383898--3383933 Score: 63
Period size: 17 Copynumber: 2.2 Consensus size: 16
3383888 CCGTCTCGTC
3383898 TCGGGTCGGGTCGTGG
1 TCGGGTCGGGTCGTGG
3383914 TCGGGTCGTGGTCGTGG
1 TCGGGTCG-GGTCGTGG
3383931 TCG
1 TCG
3383934 TGGTAATACG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.00, C:0.19, G:0.53, T:0.28
Consensus pattern (16 bp):
TCGGGTCGGGTCGTGG
Found at i:3384051 original size:21 final size:21
Alignment explanation
Indices: 3384027--3384067 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
3384017 CGTTGCGATT
3384027 TTGGACTATCGCAATGCGAAC
1 TTGGACTATCGCAATGCGAAC
3384048 TTGGACTATCGCAATGCGAA
1 TTGGACTATCGCAATGCGAA
3384068 TATGTAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (21 bp):
TTGGACTATCGCAATGCGAAC
Found at i:3384106 original size:21 final size:21
Alignment explanation
Indices: 3384076--3384124 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
3384066 AATATGTAAA
*
3384076 TCGCAATGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
3384097 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
3384118 TCGCATT
1 TCGCATT
3384125 TCGAATCTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAGT
Found at i:3384203 original size:21 final size:21
Alignment explanation
Indices: 3384177--3384291 Score: 155
Period size: 21 Copynumber: 5.5 Consensus size: 21
3384167 GAATTATCGA
3384177 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
* *
3384198 TCGCATTGCGATAGT-CGACT
1 TCGCATTGCGATAGTCCAAGT
* *
3384218 ATCGCATTGCGAT-TTACATA-T
1 -TCGCATTGCGATAGTCCA-AGT
3384239 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
3384260 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
3384281 TCGCATTGCGA
1 TCGCATTGCGA
3384292 ATCTGGAAAC
Statistics
Matches: 83, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
20 17 0.20
21 65 0.78
22 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAGT
Found at i:3384483 original size:26 final size:26
Alignment explanation
Indices: 3384451--3384501 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3384441 ATATAATACA
*
3384451 TATCACATCATCATTTTAAATATATT
1 TATCACATCATCACTTTAAATATATT
*
3384477 TATCACATCATTACTTTAAATATAT
1 TATCACATCATCACTTTAAATATAT
3384502 GATACATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.45
Consensus pattern (26 bp):
TATCACATCATCACTTTAAATATATT
Found at i:3384573 original size:25 final size:25
Alignment explanation
Indices: 3384545--3384604 Score: 86
Period size: 24 Copynumber: 2.4 Consensus size: 25
3384535 TATATATATT
*
3384545 TATCATCATTTTTAAAAATATGTCA
1 TATCATCATTTTTAAAAACATGTCA
*
3384570 TATCATCA-CTTTAAAAACATGTCA
1 TATCATCATTTTTAAAAACATGTCA
*
3384594 TATTATCATTT
1 TATCATCATTT
3384605 ATGTACACAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 21 0.70
25 9 0.30
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.43
Consensus pattern (25 bp):
TATCATCATTTTTAAAAACATGTCA
Found at i:3384674 original size:2 final size:2
Alignment explanation
Indices: 3384667--3384696 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
3384657 ATCTTCACTC
3384667 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3384697 GACATGTGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3385868 original size:31 final size:31
Alignment explanation
Indices: 3385830--3385902 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
3385820 TATTTCAAAA
* * *
3385830 GTAACAAAATAATTATTAACGTTATCGACTT
1 GTAACAAAATAATCACTAACGTTATAGACTT
*
3385861 GTAACAAAATGATCACTAACGTTATAGACTT
1 GTAACAAAATAATCACTAACGTTATAGACTT
3385892 GTAACAAAATA
1 GTAACAAAATA
3385903 GTCATTTTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (31 bp):
GTAACAAAATAATCACTAACGTTATAGACTT
Found at i:3387281 original size:31 final size:31
Alignment explanation
Indices: 3387246--3387317 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
3387236 ACGAGAGTGG
* * *
3387246 AGTGATTATTTTATCACAAGTCGATAACATT
1 AGTGACTATTTTATCACAAATCGATAAAATT
* *
3387277 AGTGACCATTTTATTACAAATCGATAAAATT
1 AGTGACTATTTTATCACAAATCGATAAAATT
3387308 AGTGACTATT
1 AGTGACTATT
3387318 GGTGTAGTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (31 bp):
AGTGACTATTTTATCACAAATCGATAAAATT
Found at i:3388439 original size:20 final size:20
Alignment explanation
Indices: 3388416--3388462 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
3388406 AACTCCAATT
3388416 TCGCAACGCGAATATATAAA
1 TCGCAACGCGAATATATAAA
* *
3388436 TCGCAACGCGAATTTGTAAA
1 TCGCAACGCGAATATATAAA
3388456 TCGCAAC
1 TCGCAAC
3388463 ACAGAAGTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.21
Consensus pattern (20 bp):
TCGCAACGCGAATATATAAA
Found at i:3388479 original size:20 final size:20
Alignment explanation
Indices: 3388456--3388518 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
3388446 AATTTGTAAA
3388456 TCGCAACACAGAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
*
3388476 TCGCAACGC-GATAGTCAAAT
1 TCGCAACACAGA-AGTCAAAT
* * *
3388496 TTGTAACACAAAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
3388516 TCG
1 TCG
3388519 TAACGCGAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 2 0.06
20 32 0.91
21 1 0.03
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21
Consensus pattern (20 bp):
TCGCAACACAGAAGTCAAAT
Found at i:3388480 original size:40 final size:41
Alignment explanation
Indices: 3388436--3388527 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 41
3388426 AATATATAAA
* *
3388436 TCGCAACGCGAATTTGT-AAA-TCGCAACACAGAAGTCAAAT
1 TCGCAACGCGAA-TAGTCAAATTCGCAACACAAAAGTCAAAT
* *
3388476 TCGCAACGCG-ATAGTCAAATTTGTAACACAAAAGTCAAAT
1 TCGCAACGCGAATAGTCAAATTCGCAACACAAAAGTCAAAT
*
3388516 TCGTAACGCGAA
1 TCGCAACGCGAA
3388528 ATACAATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
38 3 0.07
39 4 0.09
40 36 0.82
41 1 0.02
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.21
Consensus pattern (41 bp):
TCGCAACGCGAATAGTCAAATTCGCAACACAAAAGTCAAAT
Found at i:3391039 original size:4 final size:4
Alignment explanation
Indices: 3391030--3391075 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
3391020 TTTTTCGGCA
* * * *
3391030 TTAT TTAT TTAT TTAT TTAT TTAC TGAT TTAT GTAT TAAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
3391076 TTAGCGGCCC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.67
Consensus pattern (4 bp):
TTAT
Found at i:3391273 original size:21 final size:22
Alignment explanation
Indices: 3391224--3391317 Score: 65
Period size: 21 Copynumber: 4.5 Consensus size: 22
3391214 ACCTATCATT
*
3391224 ATTCAAGAGGCGCCTC-CTATC-
1 ATTCAAGAGGCCCCTCTC-ATCA
* *
3391245 GTTTAAGAGGCCCCTCTCATC-
1 ATTCAAGAGGCCCCTCTCATCA
* *
3391266 A-TCGAAGAAGCCCCTCCCA-CA
1 ATTC-AAGAGGCCCCTCTCATCA
*
3391287 ATTCAAGAGGCCCCTATCATC-
1 ATTCAAGAGGCCCCTCTCATCA
*
3391308 GTTCAAGAGG
1 ATTCAAGAGG
3391318 TCCCGCTCGC
Statistics
Matches: 57, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
20 2 0.04
21 51 0.89
22 4 0.07
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.21
Consensus pattern (22 bp):
ATTCAAGAGGCCCCTCTCATCA
Found at i:3392701 original size:69 final size:67
Alignment explanation
Indices: 3392620--3392780 Score: 197
Period size: 66 Copynumber: 2.4 Consensus size: 67
3392610 TGGGGTACAC
* *
3392620 TTTTTTTGCTTGTTTAATTGAATTT-TACAATGAAAGTTGATTTGTTTTA-TTGATGAGGAAATA
1 TTTTGTTGCTTGTTTAATTGAATTTGT---A--AAAGTTGATTTGTTTAATTTGATGAGGAAATA
3392683 AGAATTA
61 AGAATTA
* *
3392690 -TTTGTTGCTTGTTTAATTG-ATTTGTAAAAGTTGATTTGTTTAATTTGATGTGTAAATAAGAAT
1 TTTTGTTGCTTGTTTAATTGAATTTGTAAAAGTTGATTTGTTTAATTTGATGAGGAAATAAGAAT
3392753 TA
66 TA
*
3392755 TTTTTTTGCTTGTTTAATTG-ATTTGT
1 TTTTGTTGCTTGTTTAATTGAATTTGT
3392781 TGTTTTAAAT
Statistics
Matches: 83, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
64 16 0.19
65 19 0.23
66 25 0.30
68 4 0.05
69 19 0.23
ACGTcount: A:0.27, C:0.02, G:0.17, T:0.53
Consensus pattern (67 bp):
TTTTGTTGCTTGTTTAATTGAATTTGTAAAAGTTGATTTGTTTAATTTGATGAGGAAATAAGAAT
TA
Found at i:3392752 original size:65 final size:65
Alignment explanation
Indices: 3392652--3392780 Score: 206
Period size: 66 Copynumber: 2.0 Consensus size: 65
3392642 TTTTACAATG
*
3392652 AAAGTTGATTTGTTTTATTGATGAGGAAATAAGAATTA-TTTGTTGCTTGTTTAATTGATTTGTA
1 AAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTGTTGCTTGTTTAATTGATTTGTA
* * *
3392716 AAAGTTGATTTGTTTAATTTGATGTGTAAATAAGAATTATTTTTTTGCTTGTTTAATTGATTTGT
1 AAAGTTGATTTGTTTAA-TTGATGAGGAAATAAGAATTATTTTGTTGCTTGTTTAATTGATTTGT
3392781 TGTTTTAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
64 16 0.27
65 19 0.32
66 24 0.41
ACGTcount: A:0.29, C:0.02, G:0.19, T:0.51
Consensus pattern (65 bp):
AAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTGTTGCTTGTTTAATTGATTTGTA
Found at i:3392909 original size:20 final size:20
Alignment explanation
Indices: 3392836--3392902 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
3392826 TTGAATGTAC
* *
3392836 AATTTGCAACGCGAAAATCA
1 AATTCGCAACGCGAAAGTCA
*
3392856 AATTCGCAACGCGAAAGACA
1 AATTCGCAACGCGAAAGTCA
3392876 AATTCGCAACGCGAAAGTCA
1 AATTCGCAACGCGAAAGTCA
3392896 AATTCGC
1 AATTCGC
3392903 GTTGCGATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.16
Consensus pattern (20 bp):
AATTCGCAACGCGAAAGTCA
Found at i:3392969 original size:20 final size:20
Alignment explanation
Indices: 3392924--3392962 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3392914 CGGTTTGCGA
* *
3392924 TTTCACGTTGTGAATTTGAC
1 TTTCGCGTTGCGAATTTGAC
3392944 TTTCGCGTTGCGAATTTGA
1 TTTCGCGTTGCGAATTTGA
3392963 TTATCGCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.23, T:0.44
Consensus pattern (20 bp):
TTTCGCGTTGCGAATTTGAC
Found at i:3395606 original size:24 final size:24
Alignment explanation
Indices: 3395572--3395625 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
3395562 CCATCACATC
3395572 ATCAAAATCTGAGTATTGACCAAG
1 ATCAAAATCTGAGTATTGACCAAG
* *
3395596 ATCAAAGTCTGGGTATTGACCAAG
1 ATCAAAATCTGAGTATTGACCAAG
3395620 ATCAAA
1 ATCAAA
3395626 TTTCAAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.24
Consensus pattern (24 bp):
ATCAAAATCTGAGTATTGACCAAG
Found at i:3395773 original size:12 final size:12
Alignment explanation
Indices: 3395752--3395785 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
3395742 GTTGTGGGTT
*
3395752 TTTGAGATTGTG
1 TTTGACATTGTG
3395764 TTTGACATTGTG
1 TTTGACATTGTG
*
3395776 TTTGGCATTG
1 TTTGACATTG
3395786 GAAATGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.06, G:0.29, T:0.50
Consensus pattern (12 bp):
TTTGACATTGTG
Found at i:3396417 original size:14 final size:15
Alignment explanation
Indices: 3396381--3396418 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
3396371 GAAATCATTG
3396381 AAAAATTATATAGAA
1 AAAAATTATATAGAA
*
3396396 ATAAAATTATGTA-AA
1 A-AAAATTATATAGAA
3396411 AAAAATTA
1 AAAAATTA
3396419 GAGATGGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (15 bp):
AAAAATTATATAGAA
Found at i:3396635 original size:19 final size:20
Alignment explanation
Indices: 3396575--3396666 Score: 91
Period size: 19 Copynumber: 4.7 Consensus size: 20
3396565 ACTAAAACCT
*
3396575 GTTGCGAAATT-AAATTCGT-
1 GTTGCGAATTTGAAATTC-TA
* *
3396594 GTTGCGAATTCGAAAATCTA
1 GTTGCGAATTTGAAATTCTA
*
3396614 GTTGTGAATTTGAAATTC-A
1 GTTGCGAATTTGAAATTCTA
* *
3396633 GTTGCGAATTTGAAATTTTGC
1 GTTGCGAATTTGAAATTCT-A
3396654 GTTGCGAATTTGA
1 GTTGCGAATTTGA
3396667 CTATCGCGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
19 27 0.45
20 20 0.33
21 13 0.22
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (20 bp):
GTTGCGAATTTGAAATTCTA
Found at i:3396659 original size:21 final size:21
Alignment explanation
Indices: 3396575--3396686 Score: 92
Period size: 20 Copynumber: 5.6 Consensus size: 21
3396565 ACTAAAACCT
* *
3396575 GTTGCGAAATT-AAAT-TCGT
1 GTTGCGAATTTGAAATATCGC
* **
3396594 GTTGCGAATTCGAAA-ATCTA
1 GTTGCGAATTTGAAATATCGC
* *
3396614 GTTGTGAATTTGAAAT-TC-A
1 GTTGCGAATTTGAAATATCGC
* *
3396633 GTTGCGAATTTGAAATTTTGC
1 GTTGCGAATTTGAAATATCGC
*
3396654 GTTGCGAATTTG-ACTATCGC
1 GTTGCGAATTTGAAATATCGC
3396674 GTTGCGAATTTGA
1 GTTGCGAATTTGA
3396687 CTTCTGTGTT
Statistics
Matches: 75, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
19 25 0.33
20 38 0.51
21 12 0.16
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.38
Consensus pattern (21 bp):
GTTGCGAATTTGAAATATCGC
Found at i:3396663 original size:40 final size:40
Alignment explanation
Indices: 3396575--3396683 Score: 98
Period size: 39 Copynumber: 2.8 Consensus size: 40
3396565 ACTAAAACCT
* *
3396575 GTTGCGAAATT-AAATTCGTGTTGCGAATTCGAAAATCTA
1 GTTGCGAATTTGAAATTCGAGTTGCGAATTCGAAAATCTA
* * * * *
3396614 GTTGTGAATTTGAAATTC-AGTTGCGAATTTGAAATTTTGC
1 GTTGCGAATTTGAAATTCGAGTTGCGAATTCGAAAATCT-A
* *
3396654 GTTGCGAATTTG-ACTATCGCGTTGCGAATT
1 GTTGCGAATTTGAAAT-TCGAGTTGCGAATT
3396684 TGACTTCTGT
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
39 27 0.48
40 19 0.34
41 10 0.18
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.38
Consensus pattern (40 bp):
GTTGCGAATTTGAAATTCGAGTTGCGAATTCGAAAATCTA
Found at i:3396677 original size:20 final size:20
Alignment explanation
Indices: 3396633--3396717 Score: 77
Period size: 20 Copynumber: 4.2 Consensus size: 20
3396623 TTGAAATTCA
* * *
3396633 GTTGCGAATTTGAAATTTTGC
1 GTTGCGAATTTG-ACTATCGC
3396654 GTTGCGAATTTGACTATCGC
1 GTTGCGAATTTGACTATCGC
*
3396674 GTTGCGAATTTGACT-TCTGT
1 GTTGCGAATTTGACTATC-GC
3396694 GTTGCG-ATTT-ACATATTCGC
1 GTTGCGAATTTGAC-TA-TCGC
3396714 GTTG
1 GTTG
3396718 TAAAATTGGA
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
18 2 0.04
19 7 0.13
20 32 0.58
21 14 0.25
ACGTcount: A:0.19, C:0.15, G:0.25, T:0.41
Consensus pattern (20 bp):
GTTGCGAATTTGACTATCGC
Found at i:3396698 original size:40 final size:41
Alignment explanation
Indices: 3396633--3396717 Score: 104
Period size: 40 Copynumber: 2.1 Consensus size: 41
3396623 TTGAAATTCA
*
3396633 GTTGCGAATTTGAAATTTTGCGTTGCGAATTTGAC-TA-TCGC
1 GTTGCGAATTTGAAATTCTGCGTTGCG-ATTT-ACATATTCGC
* *
3396674 GTTGCGAATTTG-ACTTCTGTGTTGCGATTTACATATTCGC
1 GTTGCGAATTTGAAATTCTGCGTTGCGATTTACATATTCGC
3396714 GTTG
1 GTTG
3396718 TAAAATTGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
38 2 0.05
39 6 0.15
40 19 0.49
41 12 0.31
ACGTcount: A:0.19, C:0.15, G:0.25, T:0.41
Consensus pattern (41 bp):
GTTGCGAATTTGAAATTCTGCGTTGCGATTTACATATTCGC
Found at i:3402312 original size:14 final size:14
Alignment explanation
Indices: 3402293--3402322 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
3402283 AATTATTTTA
3402293 TTTTATTTTATTAT
1 TTTTATTTTATTAT
*
3402307 TTTTATTTTTTTAT
1 TTTTATTTTATTAT
3402321 TT
1 TT
3402323 GATTATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTATTTTATTAT
Found at i:3402511 original size:13 final size:13
Alignment explanation
Indices: 3402482--3402531 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
3402472 ATGAAATCGA
*
3402482 TTATAT-ATTTAAA
1 TTATATAATTT-AT
3402495 TTATATAATTTAT
1 TTATATAATTTAT
*
3402508 TTATTTAAATTTAT
1 TTATAT-AATTTAT
3402522 TTA-ATAATTT
1 TTATATAATTT
3402532 TGACATATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
12 5 0.16
13 13 0.41
14 14 0.44
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTATATAATTTAT
Found at i:3402531 original size:22 final size:22
Alignment explanation
Indices: 3402487--3402531 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
3402477 ATCGATTATA
*
3402487 TATTTAAATTATATAATTTATT
1 TATTTAAATTATATAATTAATT
*
3402509 TATTTAAATTTATTTAA-TAATT
1 TATTTAAA-TTATATAATTAATT
3402531 T
1 T
3402532 TGACATATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TATTTAAATTATATAATTAATT
Found at i:3405970 original size:21 final size:22
Alignment explanation
Indices: 3405939--3405983 Score: 83
Period size: 21 Copynumber: 2.1 Consensus size: 22
3405929 AGAATAATGG
3405939 AGGAAGAAGAAAATGTTTTCTT
1 AGGAAGAAGAAAATGTTTTCTT
3405961 AGGAA-AAGAAAATGTTTTCTT
1 AGGAAGAAGAAAATGTTTTCTT
3405982 AG
1 AG
3405984 ACAAAAATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.42, C:0.04, G:0.22, T:0.31
Consensus pattern (22 bp):
AGGAAGAAGAAAATGTTTTCTT
Found at i:3407834 original size:160 final size:159
Alignment explanation
Indices: 3407570--3407885 Score: 623
Period size: 160 Copynumber: 2.0 Consensus size: 159
3407560 CTCTCATTTC
3407570 TTTACTCTTAACTTGCATTTTCCCCTGTTAAATCAAAATTTATTAGTCGATGGAAGAAGGACCAG
1 TTTACTCTTAACTTGCATTTTCCCCTGTTAAATCAAAATTTATTAGTCGATGGAAGAAGGACCAG
3407635 ACCCGACAGAGCTTCGGCGCATGTTTCAGATGTTCGATAAGAACGGAGACGGCCAGATCACAAAA
66 ACCCGACAGAGCTTCGGCGCATGTTTCAGATGTTCGATAAGAACGGAGACGGCCAGATCAC-AAA
3407700 AAGAGCTTCACGATTCGCTAGTAAATTATT
130 AAGAGCTTCACGATTCGCTAGTAAATTATT
3407730 TTTACTCTTAACTTGCATTTTCCCCTGTTAAATCAAAATTTATTAGTCGATGGAAGAAGGACCAG
1 TTTACTCTTAACTTGCATTTTCCCCTGTTAAATCAAAATTTATTAGTCGATGGAAGAAGGACCAG
3407795 ACCCGACAGAGCTTCGGCGCATGTTTCAGATGTTCGATAAGAACGGAGACGGCCAGATCACAAAA
66 ACCCGACAGAGCTTCGGCGCATGTTTCAGATGTTCGATAAGAACGGAGACGGCCAGATCACAAAA
3407860 AGAGCTTCACGATTCGCTAGTAAATT
131 AGAGCTTCACGATTCGCTAGTAAATT
3407886 TGGGAATTTT
Statistics
Matches: 156, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
159 30 0.19
160 126 0.81
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (159 bp):
TTTACTCTTAACTTGCATTTTCCCCTGTTAAATCAAAATTTATTAGTCGATGGAAGAAGGACCAG
ACCCGACAGAGCTTCGGCGCATGTTTCAGATGTTCGATAAGAACGGAGACGGCCAGATCACAAAA
AGAGCTTCACGATTCGCTAGTAAATTATT
Found at i:3408379 original size:3 final size:3
Alignment explanation
Indices: 3408371--3408399 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
3408361 TTTCTCTATA
3408371 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
3408400 ATGGTTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:3413020 original size:74 final size:75
Alignment explanation
Indices: 3412935--3413089 Score: 260
Period size: 75 Copynumber: 2.1 Consensus size: 75
3412925 CACGTAGATA
3412935 TATTATCGTTCGTACTTCTTTTCGTTTA-TTTCATTTCATTTCAT-TTTTTTATATACTAATATC
1 TATTATCGTTCGTACTTCTTTTCGTTTATTTTCATTTCATTTCATATTTTTT-TATACTAATATC
3412998 TTGTTTAAACG
65 TTGTTTAAACG
**
3413009 TATTATCGTTCGTACTTCTTTTCGTTTATTTTCATTTCATTTTGTATTTTTTTATACTAATATCT
1 TATTATCGTTCGTACTTCTTTTCGTTTATTTTCATTTCATTTCATATTTTTTTATACTAATATCT
*
3413074 TGTTTAAACT
66 TGTTTAAACG
3413084 TATTAT
1 TATTAT
3413090 ATATATATAT
Statistics
Matches: 76, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
74 28 0.37
75 42 0.55
76 6 0.08
ACGTcount: A:0.21, C:0.14, G:0.06, T:0.59
Consensus pattern (75 bp):
TATTATCGTTCGTACTTCTTTTCGTTTATTTTCATTTCATTTCATATTTTTTTATACTAATATCT
TGTTTAAACG
Found at i:3413169 original size:19 final size:21
Alignment explanation
Indices: 3413145--3413183 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
3413135 TATTACTATA
3413145 ATTATTATT-TA-ATTTTTCT
1 ATTATTATTATATATTTTTCT
3413164 ATTATTATTATATATTTTTC
1 ATTATTATTATATATTTTTC
3413184 CCTCTCTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (21 bp):
ATTATTATTATATATTTTTCT
Found at i:3413170 original size:22 final size:21
Alignment explanation
Indices: 3413140--3413183 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
3413130 TTTTGTATTA
*
3413140 CTATAATTATTATTTAATTTTT
1 CTATAATTATTATAT-ATTTTT
*
3413162 CTATTATTATTATATATTTTT
1 CTATAATTATTATATATTTTT
3413183 C
1 C
3413184 CCTCTCTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.64
Consensus pattern (21 bp):
CTATAATTATTATATATTTTT
Found at i:3419847 original size:37 final size:37
Alignment explanation
Indices: 3419797--3419877 Score: 144
Period size: 37 Copynumber: 2.2 Consensus size: 37
3419787 AAGGAAATTC
3419797 AAAGAACCGGGAGAGAAGGTTAGCCAGATTGACTGCA
1 AAAGAACCGGGAGAGAAGGTTAGCCAGATTGACTGCA
*
3419834 AAAGAACCGGGAGAGAAGGTTAGCCAGATTGACTGGA
1 AAAGAACCGGGAGAGAAGGTTAGCCAGATTGACTGCA
*
3419871 AACGAAC
1 AAAGAAC
3419878 TCCAATGGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.40, C:0.16, G:0.32, T:0.12
Consensus pattern (37 bp):
AAAGAACCGGGAGAGAAGGTTAGCCAGATTGACTGCA
Found at i:3424938 original size:157 final size:157
Alignment explanation
Indices: 3424643--3424957 Score: 614
Period size: 157 Copynumber: 2.0 Consensus size: 157
3424633 ATCTTTGCAG
3424643 GTTTTACCCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCA
1 GTTTTACCCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCA
3424708 ACTTCACGACGAAGGGACCGTGGTTGTCAACGAACATTTCTCAATTTCAGAGCCAATTTCAACTT
66 ACTTCACGACGAAGGGACCGTGGTTGTCAACGAACATTTCTCAATTTCAGAGCCAATTTCAACTT
3424773 CACAACGAAGGATATTGGACTCCAGAC
131 CACAACGAAGGATATTGGACTCCAGAC
3424800 GTTTTACCCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCA
1 GTTTTACCCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCA
3424865 ACTTCACGACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTTCAGAGCCAATTTCAACT
66 ACTTCACGACGAAGGGACCG-TGGTTGTCAACGAACATTTCTCAATTTCAGAGCCAATTTCAACT
3424930 TCAC-ACGAAGGATATTGGACTCCAGAC
130 TCACAACGAAGGATATTGGACTCCAGAC
3424957 G
1 G
3424958 ACGTAAGTTC
Statistics
Matches: 157, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
157 109 0.69
158 48 0.31
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (157 bp):
GTTTTACCCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCA
ACTTCACGACGAAGGGACCGTGGTTGTCAACGAACATTTCTCAATTTCAGAGCCAATTTCAACTT
CACAACGAAGGATATTGGACTCCAGAC
Done.