Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008646.1 Hibiscus syriacus cultivar Beakdansim tig00111633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1024377
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
File 1 of 5
Found at i:6040 original size:32 final size:32
Alignment explanation
Indices: 5999--6079 Score: 162
Period size: 32 Copynumber: 2.5 Consensus size: 32
5989 TTTGATTATT
5999 ATTTGTATTTATACTTTCCTTTTCTTTCTTGA
1 ATTTGTATTTATACTTTCCTTTTCTTTCTTGA
6031 ATTTGTATTTATACTTTCCTTTTCTTTCTTGA
1 ATTTGTATTTATACTTTCCTTTTCTTTCTTGA
6063 ATTTGTATTTATACTTT
1 ATTTGTATTTATACTTT
6080 AATCTCATAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.17, C:0.14, G:0.06, T:0.63
Consensus pattern (32 bp):
ATTTGTATTTATACTTTCCTTTTCTTTCTTGA
Found at i:9753 original size:18 final size:19
Alignment explanation
Indices: 9701--9754 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
9691 AATAATAAAT
*
9701 TAATTTA-AATAAAAAGTTA
1 TAATTTATAATAAATA-TTA
*
9720 TAATTTATTATAAATATTA
1 TAATTTATAATAAATATTA
*
9739 T-ATTTATAATCAATAT
1 TAATTTATAATAAATAT
9755 AATAGAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 13 0.43
19 11 0.37
20 6 0.20
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (19 bp):
TAATTTATAATAAATATTA
Found at i:10719 original size:23 final size:23
Alignment explanation
Indices: 10691--10761 Score: 97
Period size: 23 Copynumber: 3.1 Consensus size: 23
10681 AAAGTACCAC
10691 AGTTTTGTCCCGAATGACCACAT
1 AGTTTTGTCCCGAATGACCACAT
* *
10714 AGTTTTGTCCCGAAGGACAACAT
1 AGTTTTGTCCCGAATGACCACAT
** *
10737 AGGATTGCCCCGAATGACCACAT
1 AGTTTTGTCCCGAATGACCACAT
10760 AG
1 AG
10762 AACCCTCGAC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (23 bp):
AGTTTTGTCCCGAATGACCACAT
Found at i:11335 original size:14 final size:14
Alignment explanation
Indices: 11302--11335 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
11292 ACACTAGTAT
11302 CAGTACCCCATCTA
1 CAGTACCCCATCTA
11316 -ATGTACCCCATCTA
1 CA-GTACCCCATCTA
11330 CAGTAC
1 CAGTAC
11336 TGATACTTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
13 1 0.06
14 16 0.89
15 1 0.06
ACGTcount: A:0.29, C:0.38, G:0.09, T:0.24
Consensus pattern (14 bp):
CAGTACCCCATCTA
Found at i:12548 original size:32 final size:32
Alignment explanation
Indices: 12477--12550 Score: 78
Period size: 32 Copynumber: 2.3 Consensus size: 32
12467 TTGAATCGAC
* *
12477 CCGATATTAACCCGACCCAAAATCTAACCAAT
1 CCGATATTGACCAGACCCAAAATCTAACCAAT
** * *
12509 CTAATATTGACCATACCCAAAAATC-AACCGAT
1 CCGATATTGACCAGACCC-AAAATCTAACCAAT
12541 CCGATATTGA
1 CCGATATTGA
12551 TTTGAAACAA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
32 27 0.82
33 6 0.18
ACGTcount: A:0.41, C:0.30, G:0.08, T:0.22
Consensus pattern (32 bp):
CCGATATTGACCAGACCCAAAATCTAACCAAT
Found at i:15996 original size:14 final size:15
Alignment explanation
Indices: 15970--15999 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
15960 AAATTAGTTA
15970 ATTAATAAATTAAAT
1 ATTAATAAATTAAAT
15985 ATTAAT-AATTAAAT
1 ATTAATAAATTAAAT
15999 A
1 A
16000 AAAATAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTAATAAATTAAAT
Found at i:24464 original size:16 final size:17
Alignment explanation
Indices: 24414--24464 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 17
24404 AAAAGAATTA
24414 AATTTGAAAGTTAGAGT
1 AATTTGAAAGTTAGAGT
*
24431 GA-TT-AAA-TTAGGAGT
1 AATTTGAAAGTTA-GAGT
24446 AATTTGAAAGTTA-AGT
1 AATTTGAAAGTTAGAGT
24462 AAT
1 AAT
24465 AAAATTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
14 3 0.11
15 8 0.29
16 10 0.36
17 4 0.14
18 3 0.11
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (17 bp):
AATTTGAAAGTTAGAGT
Found at i:35839 original size:16 final size:17
Alignment explanation
Indices: 35812--35843 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
35802 TTATTACTCC
35812 AAGTATAAGATGGTCTA
1 AAGTATAAGATGGTCTA
35829 AAGTA-AAGATGGTCT
1 AAGTATAAGATGGTCT
35844 TGGAGTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.41, C:0.06, G:0.25, T:0.28
Consensus pattern (17 bp):
AAGTATAAGATGGTCTA
Found at i:38893 original size:41 final size:39
Alignment explanation
Indices: 38757--39023 Score: 194
Period size: 41 Copynumber: 6.6 Consensus size: 39
38747 TTTAGAAAAA
* * * *
38757 AAACGCCGGTAAATACTCGTATTTTAGTTGTGTTTATATAT
1 AAACGCCGCTAAATACT-GTACTTTAGTGGCGTTT-TATAT
** * * *
38798 AAACGCCGCTAAATACTAAACTTTAGTGGCATTTTAAGCAC
1 AAACGCCGCTAAATACTGTACTTTAGTGGCGTTTT-A-TAT
* * * * *
38839 AAACACAGTTAAATACTCATACTTTAGTGGTGTGTTTATAT
1 AAACGCCGCTAAATACT-GTACTTTAGTGGCGT-TTTATAT
* * *
38880 AAACGCCGCTAAATAATGTACTTTAATGGCGTTTTA-AGC
1 AAACGCCGCTAAATACTGTACTTTAGTGGCGTTTTATA-T
* * *
38919 ACAACGCCACTAAATACTTGTACTTTAGTTGCATTTTTATAT
1 A-AACGCCGCTAAATAC-TGTACTTTAGTGGC-GTTTTATAT
* * *
38961 AAACGCCGCTAAATACTGTACTTTAGTGGCATTTTTTTAC
1 AAACGCCGCTAAATACTGTACTTTAGTGGC-GTTTTATAT
* *
39001 AAACGCTGCTAAAGACTCGTACT
1 AAACGCCGCTAAATACT-GTACT
39024 GTAATGACGT
Statistics
Matches: 179, Mismatches: 37, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
38 1 0.01
39 6 0.03
40 73 0.41
41 76 0.42
42 19 0.11
43 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (39 bp):
AAACGCCGCTAAATACTGTACTTTAGTGGCGTTTTATAT
Found at i:38925 original size:40 final size:39
Alignment explanation
Indices: 38757--39013 Score: 156
Period size: 40 Copynumber: 6.3 Consensus size: 39
38747 TTTAGAAAAA
* * * * ** *
38757 AAACGCCGGTAAATACTCGTATTTTAGTTGTGTTTATATAT
1 AAACGCCGCTAAATAAT-GTACTTTAGTGGCATTT-TATAC
* ** *
38798 AAACGCCGCTAAATACTAAACTTTAGTGGCATTTTAAGCAC
1 AAACGCCGCTAAATAATGTACTTTAGTGGCATTTT-A-TAC
* * * * * ** *
38839 AAACACAGTTAAATACTCATACTTTAGTGGTGTGTTTATAT
1 AAACGCCGCTAAATAAT-GTACTTTAGTGGCAT-TTTATAC
* *
38880 AAACGCCGCTAAATAATGTACTTTAATGGCGTTTTA-AGC
1 AAACGCCGCTAAATAATGTACTTTAGTGGCATTTTATA-C
* * * *
38919 ACAACGCCACTAAATACTTGTACTTTAGTTGCATTTTTATAT
1 A-AACGCCGCTAAATA-ATGTACTTTAGTGGCA-TTTTATAC
* *
38961 AAACGCCGCTAAATACTGTACTTTAGTGGCATTTTTTTAC
1 AAACGCCGCTAAATAATGTACTTTAGTGGCA-TTTTATAC
*
39001 AAACGCTGCTAAA
1 AAACGCCGCTAAA
39014 GACTCGTACT
Statistics
Matches: 170, Mismatches: 37, Indels: 19
0.75 0.16 0.08
Matches are distributed among these distances:
38 1 0.01
39 6 0.04
40 70 0.41
41 70 0.41
42 19 0.11
43 4 0.02
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35
Consensus pattern (39 bp):
AAACGCCGCTAAATAATGTACTTTAGTGGCATTTTATAC
Found at i:38974 original size:81 final size:82
Alignment explanation
Indices: 38766--38995 Score: 302
Period size: 82 Copynumber: 2.8 Consensus size: 82
38756 AAAACGCCGG
* * **
38766 TAAATACTCGTATTTTAGTTGTGTTTATATATAAACGCCGCTAAATACTAAACTTTAGTGGCATT
1 TAAATACTCGTACTTTAGTTGTGTTTTTATATAAACGCCGCTAAATACTGTACTTTAGTGGCATT
*
38831 TTAAGCACAAACACAGT
66 TTAAGCACAAACACAGC
* * * * * *
38848 TAAATACTCATACTTTAGTGGTGTGTTTATATAAACGCCGCTAAATAATGTACTTTAATGGCGTT
1 TAAATACTCGTACTTTAGTTGTGTTTTTATATAAACGCCGCTAAATACTGTACTTTAGTGGCATT
*
38913 TTAAGCAC-AACGCCA-C
66 TTAAGCACAAAC-ACAGC
* **
38929 TAAATACTTGTACTTTAGTTGCATTTTTATATAAACGCCGCTAAATACTGTACTTTAGTGGCATT
1 TAAATACTCGTACTTTAGTTGTGTTTTTATATAAACGCCGCTAAATACTGTACTTTAGTGGCATT
38994 TT
66 TT
38996 TTTACAAACG
Statistics
Matches: 126, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
81 61 0.48
82 65 0.52
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (82 bp):
TAAATACTCGTACTTTAGTTGTGTTTTTATATAAACGCCGCTAAATACTGTACTTTAGTGGCATT
TTAAGCACAAACACAGC
Found at i:39013 original size:81 final size:81
Alignment explanation
Indices: 38757--39023 Score: 279
Period size: 81 Copynumber: 3.3 Consensus size: 81
38747 TTTAGAAAAA
* * * **
38757 AAACGCCGGTAAATACTCGTATTTTAGTTGTGTTTATATATAAACGCCGCTAAATACTAAACTTT
1 AAACGCCGCTAAATACTCGTACTTTAGTTGTGTTTTTATATAAACGCCGCTAAATACTGTACTTT
*
38822 AGTGGCA-TTTTAAGCAC
66 AGTGGCATTTTTTA--AC
* * * * * * *
38839 AAACACAGTTAAATACTCATACTTTAGTGGTGTGTTTATATAAACGCCGCTAAATAATGTACTTT
1 AAACGCCGCTAAATACTCGTACTTTAGTTGTGTTTTTATATAAACGCCGCTAAATACTGTACTTT
* *
38904 AATGGC--GTTTTAAGC
66 AGTGGCATTTTTTAA-C
* * **
38919 ACAACGCCACTAAATACTTGTACTTTAGTTGCATTTTTATATAAACGCCGCTAAATACTGTACTT
1 A-AACGCCGCTAAATACTCGTACTTTAGTTGTGTTTTTATATAAACGCCGCTAAATACTGTACTT
*
38984 TAGTGGCATTTTTTTAC
65 TAGTGGCATTTTTTAAC
* *
39001 AAACGCTGCTAAAGACTCGTACT
1 AAACGCCGCTAAATACTCGTACT
39024 GTAATGACGT
Statistics
Matches: 149, Mismatches: 32, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
79 1 0.01
80 2 0.01
81 80 0.54
82 61 0.41
83 5 0.03
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (81 bp):
AAACGCCGCTAAATACTCGTACTTTAGTTGTGTTTTTATATAAACGCCGCTAAATACTGTACTTT
AGTGGCATTTTTTAAC
Found at i:39037 original size:41 final size:40
Alignment explanation
Indices: 38873--39038 Score: 104
Period size: 40 Copynumber: 4.1 Consensus size: 40
38863 TAGTGGTGTG
* * * * * *
38873 TTTATATAAACGCCGCTAAATAATGTACTTTAATGGC-GT
1 TTTATACAAACGCCGCTAAAGACTGTACTGTAATGACATT
* * * *
38912 TTTA-AGCACAACGCCACTAAATACTTGTACTTTAGTTG-CATT
1 TTTATA-CA-AACGCCGCTAAAGAC-TGTACTGTA-ATGACATT
* * * * *
38954 TTTATATAAACGCCGCTAAATACTGTACTTTAGTGGCATT
1 TTTATACAAACGCCGCTAAAGACTGTACTGTAATGACATT
* * *
38994 TTTTTACAAACGCTGCTAAAGACTCGTACTGTAATGACGTT
1 TTTATACAAACGCCGCTAAAGACT-GTACTGTAATGACATT
39035 TTTA
1 TTTA
39039 GAATAAACGC
Statistics
Matches: 102, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
38 1 0.01
39 7 0.07
40 46 0.45
41 39 0.38
42 8 0.08
43 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (40 bp):
TTTATACAAACGCCGCTAAAGACTGTACTGTAATGACATT
Found at i:41289 original size:34 final size:34
Alignment explanation
Indices: 41246--41320 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
41236 TAAAATCAAT
* *
41246 TTATATGTATATCCAGTCATCTTTTCTTTTTAAA
1 TTATATGTATATCCAGCCATCTATTCTTTTTAAA
* * *
41280 TTATATGTATATGCAGCCTTCTATTCTTTTTATA
1 TTATATGTATATCCAGCCATCTATTCTTTTTAAA
41314 TATATAT
1 T-TATAT
41321 AAAATATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
34 30 0.86
35 5 0.14
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (34 bp):
TTATATGTATATCCAGCCATCTATTCTTTTTAAA
Found at i:41900 original size:21 final size:21
Alignment explanation
Indices: 41874--41932 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
41864 TGATTTATTA
41874 TTATGGATTTCAAGTTTCTTG
1 TTATGGATTTCAAGTTTCTTG
*
41895 TTATGGATTTCAAGTTTGTTG
1 TTATGGATTTCAAGTTTCTTG
* *
41916 TTGTGGATGTCAAGTTT
1 TTATGGATTTCAAGTTT
41933 ATTGGATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.19, C:0.07, G:0.24, T:0.51
Consensus pattern (21 bp):
TTATGGATTTCAAGTTTCTTG
Found at i:43083 original size:53 final size:53
Alignment explanation
Indices: 43003--43108 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
42993 AATATATGAT
43003 TTAAAATTGAATAAAATCTTAAAATTCAAAATTACTTTATTTGTTACATCGAA
1 TTAAAATTGAATAAAATCTTAAAATTCAAAATTACTTTATTTGTTACATCGAA
43056 TTAAAATTGAATAAAATCTTAAAATTCAAAATTACTTTATTTGTTACATCGAA
1 TTAAAATTGAATAAAATCTTAAAATTCAAAATTACTTTATTTGTTACATCGAA
43109 ACATTAAAAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (53 bp):
TTAAAATTGAATAAAATCTTAAAATTCAAAATTACTTTATTTGTTACATCGAA
Found at i:45574 original size:14 final size:14
Alignment explanation
Indices: 45555--45581 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45545 ATAACGAGGG
45555 TGTATCGATACATA
1 TGTATCGATACATA
45569 TGTATCGATACAT
1 TGTATCGATACAT
45582 TTTGCACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (14 bp):
TGTATCGATACATA
Found at i:49560 original size:16 final size:16
Alignment explanation
Indices: 49539--49569 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49529 AAAAATAAAT
49539 GAACATAAACGAACAC
1 GAACATAAACGAACAC
*
49555 GAACATAAATGAACA
1 GAACATAAACGAACA
49570 AATTTTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.19, G:0.13, T:0.10
Consensus pattern (16 bp):
GAACATAAACGAACAC
Found at i:49660 original size:16 final size:16
Alignment explanation
Indices: 49639--49703 Score: 103
Period size: 16 Copynumber: 4.1 Consensus size: 16
49629 TAATAAATAA
**
49639 ACGAACATAAACGCGC
1 ACGAACATAAACGAAC
49655 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
49671 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
49687 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
49703 A
1 A
49704 TAAACGTTGG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.54, C:0.25, G:0.14, T:0.08
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:49960 original size:11 final size:11
Alignment explanation
Indices: 49944--49995 Score: 86
Period size: 11 Copynumber: 4.6 Consensus size: 11
49934 TCGAGACTTG
49944 AGCTCGATTCA
1 AGCTCGATTCA
49955 AGCTCGATTCA
1 AGCTCGATTCA
*
49966 AGCTCAATTCTA
1 AGCTCGATTC-A
49978 AGCTCGATTCA
1 AGCTCGATTCA
49989 AGCTCGA
1 AGCTCGA
49996 CATTGCCTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
11 28 0.74
12 10 0.26
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (11 bp):
AGCTCGATTCA
Found at i:49984 original size:23 final size:22
Alignment explanation
Indices: 49944--49993 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 22
49934 TCGAGACTTG
*
49944 AGCTCGATTCAAGCTCGATTCA
1 AGCTCAATTCAAGCTCGATTCA
49966 AGCTCAATTCTAAGCTCGATTCA
1 AGCTCAATTC-AAGCTCGATTCA
49989 AGCTC
1 AGCTC
49994 GACATTGCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (22 bp):
AGCTCAATTCAAGCTCGATTCA
Found at i:50822 original size:14 final size:14
Alignment explanation
Indices: 50805--50860 Score: 66
Period size: 14 Copynumber: 4.3 Consensus size: 14
50795 AACATACATA
50805 AACGAACATAACCG
1 AACGAACATAACCG
50819 AACGAACAT-A---
1 AACGAACATAACCG
*
50829 AACGAACATAACAG
1 AACGAACATAACCG
*
50843 AATGAACATAACCG
1 AACGAACATAACCG
50857 AACG
1 AACG
50861 TTCAAGAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 9 0.26
11 1 0.03
13 1 0.03
14 24 0.69
ACGTcount: A:0.54, C:0.23, G:0.14, T:0.09
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:50832 original size:24 final size:24
Alignment explanation
Indices: 50800--50859 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
50790 GGTTAAACAT
*
50800 ACATAAACGAACATAACCGAACGA
1 ACATAAACGAACATAACAGAACGA
*
50824 ACATAAACGAACATAACAGAATGA
1 ACATAAACGAACATAACAGAACGA
*
50848 ACATAACCGAAC
1 ACATAAACGAAC
50860 GTTCAAGAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.55, C:0.23, G:0.12, T:0.10
Consensus pattern (24 bp):
ACATAAACGAACATAACAGAACGA
Found at i:53500 original size:52 final size:51
Alignment explanation
Indices: 53436--53566 Score: 163
Period size: 51 Copynumber: 2.5 Consensus size: 51
53426 GGTTATGCGA
* * *
53436 TAGATAAGGATAATTAATTAGTATTTTAATATAACACTAACTCTTAGAAAAT
1 TAGATAAGGATAACTAATAAGTAGTTTAATATAA-ACTAACTCTTAGAAAAT
* * * * * *
53488 TAGATAAAGATAACTACTAAGTAGTTTAGTTTAAATTAACTCTTAGAAAGT
1 TAGATAAGGATAACTAATAAGTAGTTTAATATAAACTAACTCTTAGAAAAT
*
53539 TAGATAAGGATAACTACTAAGTAGTTTA
1 TAGATAAGGATAACTAATAAGTAGTTTA
53567 GTTTAAATTA
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
51 42 0.61
52 27 0.39
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (51 bp):
TAGATAAGGATAACTAATAAGTAGTTTAATATAAACTAACTCTTAGAAAAT
Found at i:53501 original size:25 final size:25
Alignment explanation
Indices: 53473--53553 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
53463 AATATAACAC
53473 TAACTCTTAGAAAATTAGATAAAGA
1 TAACTCTTAGAAAATTAGATAAAGA
* * ** * *
53498 TAACTACTAAGTAGTTTAGTTTAAA-T
1 TAACT-CTTAGAAAATTAG-ATAAAGA
* *
53524 TAACTCTTAGAAAGTTAGATAAGGA
1 TAACTCTTAGAAAATTAGATAAAGA
53549 TAACT
1 TAACT
53554 ACTAAGTAGT
Statistics
Matches: 40, Mismatches: 13, Indels: 6
0.68 0.22 0.10
Matches are distributed among these distances:
24 3 0.08
25 19 0.47
26 14 0.35
27 4 0.10
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.33
Consensus pattern (25 bp):
TAACTCTTAGAAAATTAGATAAAGA
Found at i:53527 original size:26 final size:26
Alignment explanation
Indices: 53498--53582 Score: 79
Period size: 26 Copynumber: 3.3 Consensus size: 26
53488 TAGATAAAGA
53498 TAACTACTAAGTAGTTTAGTTTAAAT
1 TAACTACTAAGTAGTTTAGTTTAAAT
* * *
53524 TAACT-CTTAGAAAG-TTAG-ATAAGGA-
1 TAACTACTAAG-TAGTTTAGTTTAA--AT
53549 TAACTACTAAGTAGTTTAGTTTAAAT
1 TAACTACTAAGTAGTTTAGTTTAAAT
*
53575 TAAATACT
1 TAACTACT
53583 TGTTCTCACC
Statistics
Matches: 45, Mismatches: 7, Indels: 14
0.68 0.11 0.21
Matches are distributed among these distances:
24 3 0.07
25 16 0.36
26 23 0.51
27 3 0.07
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (26 bp):
TAACTACTAAGTAGTTTAGTTTAAAT
Found at i:53535 original size:51 final size:51
Alignment explanation
Indices: 53473--53577 Score: 192
Period size: 51 Copynumber: 2.1 Consensus size: 51
53463 AATATAACAC
53473 TAACTCTTAGAAAATTAGATAAAGATAACTACTAAGTAGTTTAGTTTAAAT
1 TAACTCTTAGAAAATTAGATAAAGATAACTACTAAGTAGTTTAGTTTAAAT
* *
53524 TAACTCTTAGAAAGTTAGATAAGGATAACTACTAAGTAGTTTAGTTTAAAT
1 TAACTCTTAGAAAATTAGATAAAGATAACTACTAAGTAGTTTAGTTTAAAT
53575 TAA
1 TAA
53578 ATACTTGTTC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (51 bp):
TAACTCTTAGAAAATTAGATAAAGATAACTACTAAGTAGTTTAGTTTAAAT
Found at i:53564 original size:25 final size:24
Alignment explanation
Indices: 53487--53564 Score: 61
Period size: 25 Copynumber: 3.1 Consensus size: 24
53477 TCTTAGAAAA
53487 TTAGATAAAGATAACTACTAAGTAG
1 TTAGAT-AAGATAACTACTAAGTAG
* * *
53512 TTTAGTTTAA-ATTAACT-CTTAGAAAG
1 -TTAG-ATAAGA-TAACTACTAAG-TAG
53538 TTAGATAAGGATAACTACTAAGTAG
1 TTAGATAA-GATAACTACTAAGTAG
53563 TT
1 TT
53565 TAGTTTAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 13
0.68 0.10 0.22
Matches are distributed among these distances:
24 3 0.08
25 18 0.45
26 18 0.45
27 1 0.03
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (24 bp):
TTAGATAAGATAACTACTAAGTAG
Found at i:65038 original size:26 final size:26
Alignment explanation
Indices: 65009--65088 Score: 97
Period size: 26 Copynumber: 3.1 Consensus size: 26
64999 ATTATCTTAT
65009 TTACACTAATTTTGATTAAAATTTAA
1 TTACACTAATTTTGATTAAAATTTAA
* * *
65035 TTACATTAATTTCGATTAATATTTAA
1 TTACACTAATTTTGATTAAAATTTAA
** * *
65061 TTACACTTCTTTTGAATAAGATTTAA
1 TTACACTAATTTTGATTAAAATTTAA
65087 TT
1 TT
65089 TTTTTTTAGA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.49
Consensus pattern (26 bp):
TTACACTAATTTTGATTAAAATTTAA
Found at i:66458 original size:28 final size:28
Alignment explanation
Indices: 66426--66499 Score: 139
Period size: 28 Copynumber: 2.6 Consensus size: 28
66416 TATATATAGA
66426 TAAAATTTTGACTTGATTCGAAAAATTT
1 TAAAATTTTGACTTGATTCGAAAAATTT
66454 TAAAATTTTGACTTGATTCGAAAAATTT
1 TAAAATTTTGACTTGATTCGAAAAATTT
*
66482 TAAAATTTTGAATTGATT
1 TAAAATTTTGACTTGATT
66500 TAATGTTATA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.45
Consensus pattern (28 bp):
TAAAATTTTGACTTGATTCGAAAAATTT
Found at i:68162 original size:22 final size:22
Alignment explanation
Indices: 68134--68188 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
68124 CATTTCAAAG
68134 TTCTTAAAGAAAGATCCACATA
1 TTCTTAAAGAAAGATCCACATA
68156 TTCTTAAAGAAAGATCCACATA
1 TTCTTAAAGAAAGATCCACATA
68178 TTCTTAAAGAA
1 TTCTTAAAGAA
68189 TAAGAAGAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.29
Consensus pattern (22 bp):
TTCTTAAAGAAAGATCCACATA
Found at i:69541 original size:20 final size:21
Alignment explanation
Indices: 69506--69544 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
69496 GAGTATTTTG
69506 ACAAGAAGTTTCGAAACTTCT
1 ACAAGAAGTTTCGAAACTTCT
*
69527 ACAAG-AGTTTTGAAACTT
1 ACAAGAAGTTTCGAAACTT
69545 TCCAAGGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (21 bp):
ACAAGAAGTTTCGAAACTTCT
Found at i:69580 original size:19 final size:19
Alignment explanation
Indices: 69556--69616 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
69546 CCAAGGTAGT
69556 TTTTCAAAAGTTTTAATAC
1 TTTTCAAAAGTTTTAATAC
* * *
69575 TTTTCAAGAGTTTCAAAAC
1 TTTTCAAAAGTTTTAATAC
* * *
69594 TTTACCTAAAGTTTTGATAC
1 TTT-TCAAAAGTTTTAATAC
69614 TTT
1 TTT
69617 GTGTCCAACA
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
19 19 0.59
20 13 0.41
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (19 bp):
TTTTCAAAAGTTTTAATAC
Found at i:71417 original size:7 final size:7
Alignment explanation
Indices: 71407--71431 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
71397 AAGAAACAAC
71407 AAGAATT
1 AAGAATT
71414 AAGAATT
1 AAGAATT
71421 AAGAATT
1 AAGAATT
71428 AAGA
1 AAGA
71432 GAGAATCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (7 bp):
AAGAATT
Found at i:83611 original size:21 final size:20
Alignment explanation
Indices: 83564--83612 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
83554 TGTATCAGGC
* *
83564 TTTCTTTTTTTCATCATTTT
1 TTTCTTCTTTCCATCATTTT
83584 TTGTCTTCTTTCCATCATTTT
1 TT-TCTTCTTTCCATCATTTT
83605 TATTCTTC
1 T-TTCTTC
83613 ATTTTTCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.08
21 22 0.88
22 1 0.04
ACGTcount: A:0.10, C:0.20, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTCTTCTTTCCATCATTTT
Found at i:86579 original size:22 final size:22
Alignment explanation
Indices: 86553--86594 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
86543 GTCACCGGTT
86553 GGCCACCACCGGTCACTATTCC
1 GGCCACCACCGGTCACTATTCC
***
86575 GGCCACTGTCGGTCACTATT
1 GGCCACCACCGGTCACTATT
86595 TCGACCGTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.17, C:0.38, G:0.21, T:0.24
Consensus pattern (22 bp):
GGCCACCACCGGTCACTATTCC
Found at i:87294 original size:17 final size:14
Alignment explanation
Indices: 87278--87306 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
87268 TAAAATTATT
87278 TATT-AAATAATAA
1 TATTAAAATAATAA
87291 TATTAAAATAATAA
1 TATTAAAATAATAA
87305 TA
1 TA
87307 ATAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
TATTAAAATAATAA
Found at i:87307 original size:17 final size:17
Alignment explanation
Indices: 87283--87316 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
87273 TTATTTATTA
*
87283 AATAATAATATTAAAAT
1 AATAATAATAATAAAAT
87300 AATAATAATAATAAAAT
1 AATAATAATAATAAAAT
87317 GAGACAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AATAATAATAATAAAAT
Found at i:87961 original size:122 final size:122
Alignment explanation
Indices: 87691--88255 Score: 647
Period size: 122 Copynumber: 4.7 Consensus size: 122
87681 GAATTAAGGC
* * * * *
87691 AAGGTTGAACAAATTCTTATCATTATGAACTTCTT-ATCATTCTTCATATGAGTTCTTCTTATTA
1 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTC-CTCTTCAGATGAGTTCTTCTCATTA
* * * * *
87755 TAAACTCTTTCTGAAAATGTTGATGCTGATATATCTCTTTTTGTGATA-AAGTCATGCAA
65 TGAACAC-TTCTGGAAATGTTGATGCTGATCTATCTC-TTTTGTGATAGAAGTCAAGCAA
* * *
87814 ATGGTTGAACAAATTCTTCTTATTATGAACTTATTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
* * * *
87879 GAACACTTCTGGAAATTTTGATGATGATCTATCTCTTTCTTTGATAGAA-TCGAGCAA
66 GAACACTTCTGGAAATGTTGATGCTGATCTATCTCTTT-TGTGATAGAAGTCAAGCAA
* *
87936 AAGGTTTAACAAATTATTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
* * ** * *
88001 GAACACTTCTAGAAA--TT--T--TGATCCA--TC--GAGTGGT-GAATTCAAGCAA
66 GAACACTTCTGGAAATGTTGATGCTGATCTATCTCTTTTGTGATAGAAGTCAAGCAA
*
88047 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCATTA
* *
88112 TGAACACTTCTGGAAATGTTGGTGCTGATCTATCTCCTTTTGGGATAGAA-TCAAGCAA
65 TGAACACTTCTGGAAATGTTGATGCTGATCTATCT-CTTTTGTGATAGAAGTCAAGCAA
* * * * *
88170 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTCCTTCTTCTTCATATGATTTCTTCTCATTAT
1 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
* *
88235 GAACTTCATCTGGAAATGTTG
66 GAAC-ACTTCTGGAAATGTTG
88256 GTCCATCGAG
Statistics
Matches: 380, Mismatches: 44, Indels: 36
0.83 0.10 0.08
Matches are distributed among these distances:
110 3 0.01
111 47 0.12
112 39 0.10
114 4 0.01
116 7 0.02
118 7 0.02
120 3 0.01
121 4 0.01
122 138 0.36
123 123 0.32
124 5 0.01
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (122 bp):
AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
GAACACTTCTGGAAATGTTGATGCTGATCTATCTCTTTTGTGATAGAAGTCAAGCAA
Found at i:88123 original size:234 final size:234
Alignment explanation
Indices: 87810--88272 Score: 687
Period size: 234 Copynumber: 2.0 Consensus size: 234
87800 ATAAAGTCAT
* *
87810 GCAAATGGTTGAACAAATTCTTCTTATTATGAACTTATTCTTCCTCTTCAGATGAGTTCTTCTCA
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTCTTCAGATGAGTTCTTCTCA
* ** *
87875 TTATGAACACTTCTGGAAATTTTGATGATGATCTATCT-CTTTCTTTGATAGAATCGAGCAAAAG
66 TTATGAACACTTCTGGAAATGTTGATGATGATCTATCTCCTTT-TGGGATAGAATCAAGCAAAAG
* *
87939 GTTTAACAAATTATTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTATGAA
130 GTTGAACAAATTATTCTCATTATGAACTTCTCCTTCCTCTTCAGATGAGTTCTTCTCATTATGAA
* * *
88004 C-ACTTCTAGAAATTTTGATCCATCGAGTGGTGAATTCAA
195 CTACATCTAGAAATGTTGATCCATCGAGTGATGAATTCAA
* *
88043 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCC-TCTTCAGATGAGTTCTTCTC
* *
88108 ATTATGAACACTTCTGGAAATGTTGGTGCTGATCTATCTCCTTTTGGGATAGAATCAAGCAAAAG
65 ATTATGAACACTTCTGGAAATGTTGATGATGATCTATCTCCTTTTGGGATAGAATCAAGCAAAAG
* * * * *
88173 GTTGAACAAGTTCTTCTCATTATGAACTTCTCCTTCTTCTTCATATGATTTCTTCTCATTATGAA
130 GTTGAACAAATTATTCTCATTATGAACTTCTCCTTCCTCTTCAGATGAGTTCTTCTCATTATGAA
* * *
88238 CTTCATCTGGAAATGTTGGTCCATCGAGTGATGAA
195 CTACATCTAGAAATGTTGATCCATCGAGTGATGAA
88273 AATTTCTGTT
Statistics
Matches: 204, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
233 40 0.20
234 133 0.65
235 31 0.15
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (234 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTATTCTTCCTCTTCAGATGAGTTCTTCTCA
TTATGAACACTTCTGGAAATGTTGATGATGATCTATCTCCTTTTGGGATAGAATCAAGCAAAAGG
TTGAACAAATTATTCTCATTATGAACTTCTCCTTCCTCTTCAGATGAGTTCTTCTCATTATGAAC
TACATCTAGAAATGTTGATCCATCGAGTGATGAATTCAA
Found at i:88461 original size:71 final size:73
Alignment explanation
Indices: 88279--88494 Score: 334
Period size: 73 Copynumber: 3.0 Consensus size: 73
88269 TGAAAATTTC
*
88279 TGTTTCTAGTGAAACTGTCTCAAGCGAGA-CAAATTTTGTTTTAAGAAAAACAATCTCAAGTGAG
1 TGTTTCGAGTGAAACTGTCTCAAGCGAGATC-AATTTTGTTTTAAGAAAAACAATCTCAAGTGAG
*
88343 ATAAATTGT
65 ATAAATTAT
* *
88352 TGTTTCGGGTGAAACTGTCTCAAGCGAGAT-AAGTTTTGTTTTAAGAAAAATAATCTCAAGT-A-
1 TGTTTCGAGTGAAACTGTCTCAAGCGAGATCAA-TTTTGTTTTAAGAAAAACAATCTCAAGTGAG
88414 ATAAATTAT
65 ATAAATTAT
88423 TGTTTCGAGTGAAACTGTCTCAAGCGAGATGCAA-TTTGTTTTAAGAAAAACAATCTCAAGTGAG
1 TGTTTCGAGTGAAACTGTCTCAAGCGAGAT-CAATTTTGTTTTAAGAAAAACAATCTCAAGTGAG
88487 ATAAATTA
65 ATAAATTA
88495 CTATTTGAAA
Statistics
Matches: 131, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
71 63 0.48
72 4 0.03
73 64 0.49
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (73 bp):
TGTTTCGAGTGAAACTGTCTCAAGCGAGATCAATTTTGTTTTAAGAAAAACAATCTCAAGTGAGA
TAAATTAT
Found at i:89371 original size:22 final size:22
Alignment explanation
Indices: 89346--89397 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
89336 AATAAAGCAT
*
89346 TCATCTTTGAAAAGATAATCTA
1 TCATCTTTGAAAAGAGAATCTA
89368 TCATCTTTGAAAAGAGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
89390 TCATCTTT
1 TCATCTTT
89398 AAAGAGTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:93336 original size:32 final size:32
Alignment explanation
Indices: 93297--93363 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
93287 TAAAGAAATG
* * *
93297 GTTGTTATGCTTATCTGGTAGAGATACTTCTT
1 GTTGTTATGCTCATCTCGTAGAAATACTTCTT
93329 GTTGTTATGCTCATCTCGTAGAAATACTTCTT
1 GTTGTTATGCTCATCTCGTAGAAATACTTCTT
93361 GTT
1 GTT
93364 TCCATACTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.19, C:0.15, G:0.19, T:0.46
Consensus pattern (32 bp):
GTTGTTATGCTCATCTCGTAGAAATACTTCTT
Found at i:93866 original size:16 final size:16
Alignment explanation
Indices: 93823--93860 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
93813 AATTTTTTCC
*
93823 TTTTTTCTTCATT-CTT
1 TTTTTTCTT-TTTCCTT
93839 TTTTTTCTTTTTCCTT
1 TTTTTTCTTTTTCCTT
93855 TTTTTT
1 TTTTTT
93861 TATTTTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTTCTTTTTCCTT
Found at i:98293 original size:28 final size:30
Alignment explanation
Indices: 98243--98331 Score: 86
Period size: 28 Copynumber: 3.2 Consensus size: 30
98233 ATTTAATACT
*
98243 TGAAAATAA-AA-T-TAAATAAAAATATTAA
1 TGAAAATAATAAGTATACATAAAAATATT-A
*
98271 T-AAAA-AATAA-TATACATATAAATATTA
1 TGAAAATAATAAGTATACATAAAAATATTA
*
98298 TGAAAATAATAAGTATATATAAAAAT-TT-
1 TGAAAATAATAAGTATACATAAAAATATTA
98326 TGAAAA
1 TGAAAA
98332 GAAAGAATTA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
26 2 0.04
27 9 0.17
28 23 0.44
29 7 0.13
30 11 0.21
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (30 bp):
TGAAAATAATAAGTATACATAAAAATATTA
Found at i:99732 original size:22 final size:22
Alignment explanation
Indices: 99707--99748 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
99697 ACATCCGGTT
* *
99707 ACCGCCTGTTACTATTCCGACC
1 ACCGCCGGTAACTATTCCGACC
*
99729 ACCGTCGGTAACTATTCCGA
1 ACCGCCGGTAACTATTCCGA
99749 TCGTCGATCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.17, T:0.26
Consensus pattern (22 bp):
ACCGCCGGTAACTATTCCGACC
Found at i:102203 original size:29 final size:28
Alignment explanation
Indices: 102092--102338 Score: 158
Period size: 29 Copynumber: 8.5 Consensus size: 28
102082 AAAAATCATC
* *
102092 AAATTAAAATAAAAGACAAAA-TGTTAT
1 AAATTACAATAAAAGACAAAATTTTTAT
* ** * *
102119 AGAATTTATAATAAAAGTTTAAACTTTTTAG
1 A-AA-TTACAATAAAAG-ACAAAATTTTTAT
* *
102150 AATTTACAATAAAGGA-AAATTATTTTATAT
1 AAATTACAATAAAAGACAAA--ATTTT-TAT
* *
102180 AAATTATAATAAAAGACAAAATTTGTTGT
1 AAATTACAATAAAAGACAAAATTT-TTAT
* **
102209 AAACTACAAT-AAAGTACAAAACAATTTAT
1 AAATTACAATAAAAG-ACAAAA-TTTTTAT
* *
102238 AAATTACAATAAAATACAAAACTATTTAT
1 AAATTACAATAAAAGACAAAA-TTTTTAT
* *
102267 AAATTACAATAAAGGATAAAACTTTTTAT
1 AAATTACAATAAAAGACAAAA-TTTTTAT
* * *
102296 AAATTATAATAAAAGGAGACAATTTTTTAT
1 AAATTACAATAAAA-GACA-AAATTTTTAT
*
102326 AAAATACAATAAA
1 AAATTACAATAAA
102339 TTTAGCATAA
Statistics
Matches: 172, Mismatches: 34, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
27 4 0.02
28 6 0.03
29 107 0.62
30 45 0.26
31 10 0.06
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (28 bp):
AAATTACAATAAAAGACAAAATTTTTAT
Found at i:103888 original size:2 final size:2
Alignment explanation
Indices: 103881--103932 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
103871 TTGCCATAAC
103881 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
103923 AT AT AT AT AT
1 AT AT AT AT AT
103933 GCGCGCGCGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:103969 original size:23 final size:20
Alignment explanation
Indices: 103943--103983 Score: 55
Period size: 23 Copynumber: 1.9 Consensus size: 20
103933 GCGCGCGCGC
103943 GCTTGTATAATATAAGTATTTTG
1 GCTTGT-TAA-ATAA-TATTTTG
103966 GCTTGTTAAATAATATTT
1 GCTTGTTAAATAATATTT
103984 ATTTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 4 0.22
22 3 0.17
23 6 0.33
ACGTcount: A:0.32, C:0.05, G:0.15, T:0.49
Consensus pattern (20 bp):
GCTTGTTAAATAATATTTTG
Found at i:105561 original size:18 final size:20
Alignment explanation
Indices: 105538--105579 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
105528 GGTCAGCTAG
105538 TTTT-GGGGGTTT-TGAAAT
1 TTTTGGGGGGTTTATGAAAT
*
105556 TTTTGGGGGGTTTATGATAT
1 TTTTGGGGGGTTTATGAAAT
105576 TTTT
1 TTTT
105580 AAAAATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 8 0.38
20 9 0.43
ACGTcount: A:0.14, C:0.00, G:0.31, T:0.55
Consensus pattern (20 bp):
TTTTGGGGGGTTTATGAAAT
Found at i:106285 original size:26 final size:26
Alignment explanation
Indices: 106205--106287 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
106195 ATATTTACAC
*
106205 TTATATATGAATCATATCAATTTAAA
1 TTATATATGAATTATATCAATTTAAA
* * * **
106231 CTATA-ATAAATTCAAAAAAACTATT--A
1 TTATATATGAATT-ATATCAA-T-TTAAA
106257 TTATATATGAATTATATCAATTTAAA
1 TTATATATGAATTATATCAATTTAAA
106283 TTATA
1 TTATA
106288 ATAAAAAATA
Statistics
Matches: 40, Mismatches: 11, Indels: 12
0.63 0.17 0.19
Matches are distributed among these distances:
24 2 0.05
25 6 0.15
26 23 0.57
27 7 0.17
28 2 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (26 bp):
TTATATATGAATTATATCAATTTAAA
Found at i:106314 original size:52 final size:51
Alignment explanation
Indices: 106206--106314 Score: 121
Period size: 52 Copynumber: 2.1 Consensus size: 51
106196 TATTTACACT
* * ** *
106206 TATATATGAATCATATCAATTTAAACTATAATAAATTCAAAAAAACTATTAT
1 TATATATGAATCATATCAATTTAAACTATAATAAA-TAAAAAAAAATACAAA
* *
106258 TATATATGAATTATATCAATTTAAATTATAATAAA-AAATATAAAAATACAAA
1 TATATATGAATCATATCAATTTAAACTATAATAAATAAA-A-AAAAATACAAA
106310 TATAT
1 TATAT
106315 TTTATATAAC
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
50 2 0.04
51 1 0.02
52 45 0.94
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (51 bp):
TATATATGAATCATATCAATTTAAACTATAATAAATAAAAAAAAATACAAA
Found at i:114706 original size:199 final size:199
Alignment explanation
Indices: 114294--114734 Score: 525
Period size: 199 Copynumber: 2.2 Consensus size: 199
114284 TAATGTAATA
* * * *
114294 GGTATAAATATACTGATTTTATGATAGAATAGGTCAACATAATGTATCGACACAAATTTAAAAAG
1 GGTATAAATATACCGGTTTTATGAGAAAATAGGTCAACATAATGTATCGACACAAATTTAAAAAG
* * * * * * *
114359 TGTCGATACATTTTGTCCAGAATGAATGTCAAACGAGGTGCACGAATAAAGTGTCTATGCATTTA
66 TATCAATACATTTTGTCCAGAATGAATGCCAAACGAGATACACGAATAAAGTGTCGAT-CATATA
114424 TTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTACAATGTAATAGGTAAATTTACAATG
130 TTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTACAATGTAATAGGTAAATTTACAATG
114489 TATCC
195 TATCC
* * * ** *
114494 GGTAGAAATATACCGGTTTTATGAGAAAATAGGTCTACATAATGTATTTGACAC-GTTTTAAATT
1 GGTATAAATATACCGGTTTTATGAGAAAATAGGTCAACATAATGTA-TCGACACAAATTTAAA-A
* * * *
114558 TGTATCAATAC-TTTTTTCCAGAATGAATGCCCAACGAGATACACGCATAAAGTGTCGAT-ATAT
64 AGTATCAATACATTTTGTCCAGAATGAATGCCAAACGAGATACACGAATAAAGTGTCGATCATAT
* * * *
114621 -TTAAAATTGTATCTATCCCAAAAACATCGAAACTGATAATTATAATGTAATAGGTAAATTTATA
129 ATTAAAA--GTATCGATCCCAAAAACATCGAAACCGATAATTACAATGTAATAGGTAAATTTACA
114685 ATGT-TACC
192 ATGTAT-CC
* * *
114693 GGTATAAATATACCGG-TTTAGTTAGAAAATAAGTCAATATAA
1 GGTATAAATATACCGGTTTTA-TGAGAAAATAGGTCAACATAA
114735 GCGCTACTTA
Statistics
Matches: 205, Mismatches: 30, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
197 6 0.03
198 8 0.04
199 90 0.44
200 87 0.42
201 14 0.07
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (199 bp):
GGTATAAATATACCGGTTTTATGAGAAAATAGGTCAACATAATGTATCGACACAAATTTAAAAAG
TATCAATACATTTTGTCCAGAATGAATGCCAAACGAGATACACGAATAAAGTGTCGATCATATAT
TAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTACAATGTAATAGGTAAATTTACAATGT
ATCC
Found at i:114829 original size:23 final size:23
Alignment explanation
Indices: 114803--114851 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
114793 TCCGGATATA
114803 TACCTATT-TAATTATATAAGCGC
1 TACCTATTAT-ATTATATAAGCGC
*
114826 TACCTATTATATTATATAAGTGC
1 TACCTATTATATTATATAAGCGC
114849 TAC
1 TAC
114852 ATAATATGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (23 bp):
TACCTATTATATTATATAAGCGC
Found at i:114863 original size:23 final size:23
Alignment explanation
Indices: 114813--114863 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
114803 TACCTATTTA
* *
114813 ATTATATAAGCGCTACCTATTAT
1 ATTATATAAGCGCTACATAATAT
*
114836 ATTATATAAGTGCTACATAATAT
1 ATTATATAAGCGCTACATAATAT
*
114859 GTTAT
1 ATTAT
114864 TGTACTTGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (23 bp):
ATTATATAAGCGCTACATAATAT
Found at i:114920 original size:23 final size:23
Alignment explanation
Indices: 114894--114938 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
114884 GTTAAATATT
*
114894 TATTTTATTATATAAGAGTTACC
1 TATTATATTATATAAGAGTTACC
*
114917 TATTATATTATATAAGTGTTAC
1 TATTATATTATATAAGAGTTAC
114939 TTAATACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.49
Consensus pattern (23 bp):
TATTATATTATATAAGAGTTACC
Found at i:114933 original size:87 final size:87
Alignment explanation
Indices: 114729--114977 Score: 309
Period size: 87 Copynumber: 2.9 Consensus size: 87
114719 AAATAAGTCA
* * ** *
114729 ATATAAGCGCTACTTATTACATTATATAAGAACTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTATATTATATAAGTGCTACATAATATGTTATTGTACTTGATAATATTT
* *
114794 CCGGATATATACCTATTTAATT
66 CCGGTTAAATACCTATTTAATT
114816 ATATAAGCGCTACCTATTATATTATATAAGTGCTACATAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTATATTATATAAGTGCTACATAATATGTTATTGTACTTGATAATATTT
* ** *
114881 TCGGTTAAATATTTATTTTATT
66 CCGGTTAAATACCTATTTAATT
* * * * ** * * *
114903 ATATAAGAGTTACCTATTATATTATATAAGTGTTACTTAATACATTATTATATTTAATAATATTT
1 ATATAAGCGCTACCTATTATATTATATAAGTGCTACATAATATGTTATTGTACTTGATAATATTT
*
114968 CCGATTAAAT
66 CCGGTTAAAT
114978 GATATAATAT
Statistics
Matches: 140, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
87 140 1.00
ACGTcount: A:0.36, C:0.10, G:0.09, T:0.45
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTATATTATATAAGTGCTACATAATATGTTATTGTACTTGATAATATTT
CCGGTTAAATACCTATTTAATT
Found at i:114949 original size:23 final size:23
Alignment explanation
Indices: 114900--114950 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
114890 TATTTATTTT
* *
114900 ATTATATAAGAGTTACCTATTAT
1 ATTATATAAGAGTTACCTAATAC
* *
114923 ATTATATAAGTGTTACTTAATAC
1 ATTATATAAGAGTTACCTAATAC
114946 ATTAT
1 ATTAT
114951 TATATTTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (23 bp):
ATTATATAAGAGTTACCTAATAC
Found at i:114951 original size:26 final size:24
Alignment explanation
Indices: 114898--114955 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
114888 AATATTTATT
*
114898 TTATTATATAAGAGTTACCTATTA
1 TTATTATATAAGAGTTACCTATCA
* *
114922 -TATTATATAAGTGTTACTTAATACA
1 TTATTATATAAGAGTTACCT-AT-CA
114947 TTATTATAT
1 TTATTATAT
114956 TTAATAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 17 0.61
24 2 0.07
25 1 0.04
26 8 0.29
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (24 bp):
TTATTATATAAGAGTTACCTATCA
Found at i:117029 original size:170 final size:170
Alignment explanation
Indices: 116747--117086 Score: 680
Period size: 170 Copynumber: 2.0 Consensus size: 170
116737 TCATTAGTCG
116747 TTAGTCCAATTTGCTTTTGTTGGATTGTTCCTACTTGCACGATCACCTGGCTACCAAGAAATTTC
1 TTAGTCCAATTTGCTTTTGTTGGATTGTTCCTACTTGCACGATCACCTGGCTACCAAGAAATTTC
116812 CTATAGCTTCCAAAAATGATGAAAAACTCGTCGAGTTGGATCATAATACTGTTTAAGTTCTAGAA
66 CTATAGCTTCCAAAAATGATGAAAAACTCGTCGAGTTGGATCATAATACTGTTTAAGTTCTAGAA
116877 TTCGTATTCAACCGAATCCTTTATGGGCATTCCCCCCCCC
131 TTCGTATTCAACCGAATCCTTTATGGGCATTCCCCCCCCC
116917 TTAGTCCAATTTGCTTTTGTTGGATTGTTCCTACTTGCACGATCACCTGGCTACCAAGAAATTTC
1 TTAGTCCAATTTGCTTTTGTTGGATTGTTCCTACTTGCACGATCACCTGGCTACCAAGAAATTTC
116982 CTATAGCTTCCAAAAATGATGAAAAACTCGTCGAGTTGGATCATAATACTGTTTAAGTTCTAGAA
66 CTATAGCTTCCAAAAATGATGAAAAACTCGTCGAGTTGGATCATAATACTGTTTAAGTTCTAGAA
117047 TTCGTATTCAACCGAATCCTTTATGGGCATTCCCCCCCCC
131 TTCGTATTCAACCGAATCCTTTATGGGCATTCCCCCCCCC
117087 CCCCCCCCCC
Statistics
Matches: 170, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
170 170 1.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (170 bp):
TTAGTCCAATTTGCTTTTGTTGGATTGTTCCTACTTGCACGATCACCTGGCTACCAAGAAATTTC
CTATAGCTTCCAAAAATGATGAAAAACTCGTCGAGTTGGATCATAATACTGTTTAAGTTCTAGAA
TTCGTATTCAACCGAATCCTTTATGGGCATTCCCCCCCCC
Found at i:122493 original size:20 final size:20
Alignment explanation
Indices: 122464--122503 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
122454 CCAAACCGGT
*
122464 TATCCTATCCGGTTTTAAAA
1 TATCCGATCCGGTTTTAAAA
122484 TATCCGATCCGGTTTTAAAA
1 TATCCGATCCGGTTTTAAAA
122504 AAAAACAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (20 bp):
TATCCGATCCGGTTTTAAAA
Found at i:125917 original size:85 final size:86
Alignment explanation
Indices: 125774--125945 Score: 337
Period size: 85 Copynumber: 2.0 Consensus size: 86
125764 GTATTTCCTT
125774 AGAACCCTGTTTGAAAGCTCAACTTCTGGAAGAAGACAATATGCTTTGGTTGGAGTAATAACCAA
1 AGAACCCTGTTTGAAAGCTCAACTTCTGGAAGAAGACAATATGCTTTGGTTGGAGTAATAACCAA
125839 TCTTCTGATCTCAA-AATATC
66 TCTTCTGATCTCAACAATATC
125859 AGAACCCTGTTTGAAAGCTCAACTTCTGGAAGAAGACAATATGCTTTGGTTGGAGTAATAACCAA
1 AGAACCCTGTTTGAAAGCTCAACTTCTGGAAGAAGACAATATGCTTTGGTTGGAGTAATAACCAA
125924 TCTTCTGATCTCAACAATATC
66 TCTTCTGATCTCAACAATATC
125945 A
1 A
125946 TCCAACTGTT
Statistics
Matches: 86, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 79 0.92
86 7 0.08
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (86 bp):
AGAACCCTGTTTGAAAGCTCAACTTCTGGAAGAAGACAATATGCTTTGGTTGGAGTAATAACCAA
TCTTCTGATCTCAACAATATC
Found at i:128343 original size:12 final size:12
Alignment explanation
Indices: 128326--128354 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
128316 ACTATAATTC
128326 TATTAATTACAA
1 TATTAATTACAA
128338 TATTAATTACAA
1 TATTAATTACAA
128350 TATTA
1 TATTA
128355 TAATCTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (12 bp):
TATTAATTACAA
Found at i:133396 original size:18 final size:18
Alignment explanation
Indices: 133373--133414 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
133363 TTGTCAGTTA
133373 AATAAAATGATAGTGAAG
1 AATAAAATGATAGTGAAG
133391 AATAAAATGATAGTGAAG
1 AATAAAATGATAGTGAAG
133409 AATAAA
1 AATAAA
133415 CATTTTCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.60, C:0.00, G:0.19, T:0.21
Consensus pattern (18 bp):
AATAAAATGATAGTGAAG
Found at i:136952 original size:15 final size:15
Alignment explanation
Indices: 136929--136960 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
136919 AACCGAAGTC
*
136929 AAAATGTGTTTTAAA
1 AAAAGGTGTTTTAAA
136944 AAAAGGTGTTTTAAA
1 AAAAGGTGTTTTAAA
136959 AA
1 AA
136961 GTATACATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (15 bp):
AAAAGGTGTTTTAAA
Found at i:139178 original size:16 final size:17
Alignment explanation
Indices: 139149--139182 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
139139 GCATGCTTAA
139149 TTTATTTTTATATTTTT
1 TTTATTTTTATATTTTT
139166 TTTATTTTT-TATTTTT
1 TTTATTTTTATATTTTT
139182 T
1 T
139183 AATTAGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTATTTTTATATTTTT
Found at i:142379 original size:15 final size:14
Alignment explanation
Indices: 142359--142388 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
142349 ATTATATATA
142359 TTTTATTTTATGTTT
1 TTTTATTTTAT-TTT
142374 TTTTATTTTATTTT
1 TTTTATTTTATTTT
142388 T
1 T
142389 CCTATGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (14 bp):
TTTTATTTTATTTT
Found at i:153087 original size:6 final size:6
Alignment explanation
Indices: 153076--153114 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
153066 CTAAATTGAA
153076 AAAAAG AAAAAG --AAAG AAAAAG AAAAAG AAAAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG -AAAAAG AAAA
153115 TAAAGTGGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
4 4 0.13
6 20 0.67
7 6 0.20
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:153097 original size:16 final size:16
Alignment explanation
Indices: 153076--153106 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
153066 CTAAATTGAA
153076 AAAAAGAAAAAGAAAG
1 AAAAAGAAAAAGAAAG
153092 AAAAAGAAAAAGAAA
1 AAAAAGAAAAAGAAA
153107 AAAGAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAAGAAAG
Found at i:155162 original size:23 final size:23
Alignment explanation
Indices: 155132--155192 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
155122 CTCATATAAA
155132 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
**
155155 TGCACCGAAGTGCCGTGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
155178 TGCACCAAAGTGCCA
1 TGCACCGAAGTGCCA
155193 TATAAAATGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.18
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:155572 original size:18 final size:19
Alignment explanation
Indices: 155538--155574 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
155528 CATATGATTC
155538 ACTTTCACTTATCATATAT
1 ACTTTCACTTATCATATAT
*
155557 ACTTTCTCTT-TCATATAT
1 ACTTTCACTTATCATATAT
155575 CTCATGGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.27, C:0.22, G:0.00, T:0.51
Consensus pattern (19 bp):
ACTTTCACTTATCATATAT
Found at i:155817 original size:23 final size:23
Alignment explanation
Indices: 155787--155830 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
155777 CATTTTATAT
155787 GGCACTTCGGTACAATTCTACAC
1 GGCACTTCGGTACAATTCTACAC
**
155810 GGCACTTCGGTGTAATTCTAC
1 GGCACTTCGGTACAATTCTAC
155831 GTATCACTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (23 bp):
GGCACTTCGGTACAATTCTACAC
Found at i:166073 original size:11 final size:11
Alignment explanation
Indices: 166057--166081 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
166047 CACAACTTCA
166057 TTTTTTTCATT
1 TTTTTTTCATT
166068 TTTTTTTCATT
1 TTTTTTTCATT
166079 TTT
1 TTT
166082 AGTGGGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTTCATT
Found at i:166875 original size:18 final size:18
Alignment explanation
Indices: 166854--166899 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
166844 TTCTTTAGCG
166854 TCAGCAGGCTCTTCAGGT
1 TCAGCAGGCTCTTCAGGT
166872 TCAGCAGGCTCTTCAGGT
1 TCAGCAGGCTCTTCAGGT
166890 TCAGCAGGCT
1 TCAGCAGGCT
166900 GGGGACTCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.26
Consensus pattern (18 bp):
TCAGCAGGCTCTTCAGGT
Found at i:168118 original size:13 final size:13
Alignment explanation
Indices: 168100--168129 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
168090 AGAAGATGAG
*
168100 AAAAAGTTAAAGT
1 AAAAAGATAAAGT
168113 AAAAAGATAAAGT
1 AAAAAGATAAAGT
168126 AAAA
1 AAAA
168130 GTGAAATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (13 bp):
AAAAAGATAAAGT
Found at i:174030 original size:21 final size:23
Alignment explanation
Indices: 173980--174036 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
173970 AAATTAAGGA
173980 AAGTAAAAAAAATATATAAAGCT
1 AAGTAAAAAAAATATATAAAGCT
* *
174003 AACTAAAAAGAAA-ATATGAA-C-
1 AAGTAAAAA-AAATATATAAAGCT
174024 AAGTAAAATAAAA
1 AAGTAAAA-AAAA
174037 ATGCTATGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 10 0.34
22 2 0.07
23 14 0.48
24 3 0.10
ACGTcount: A:0.68, C:0.05, G:0.09, T:0.18
Consensus pattern (23 bp):
AAGTAAAAAAAATATATAAAGCT
Found at i:175951 original size:27 final size:27
Alignment explanation
Indices: 175910--175969 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
175900 CAAATCACCT
* *
175910 TCGATGTTTTAA-TTTTAAGGGGGTGCA
1 TCGATGTTTCAATTTTTAA-GGGGTACA
* *
175937 TCGATGTTTCCATTTTTAATGGGTACA
1 TCGATGTTTCAATTTTTAAGGGGTACA
175964 TCGATG
1 TCGATG
175970 CACTTCCTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 22 0.79
28 6 0.21
ACGTcount: A:0.22, C:0.12, G:0.25, T:0.42
Consensus pattern (27 bp):
TCGATGTTTCAATTTTTAAGGGGTACA
Found at i:178858 original size:103 final size:103
Alignment explanation
Indices: 178679--178886 Score: 389
Period size: 103 Copynumber: 2.0 Consensus size: 103
178669 CCAAAACTCT
* *
178679 TTTCTTTACAAATCCACGAAAATCTTAAATTCATCATTTGAAAAGATGAGTACTTTATAGAAATA
1 TTTCTTTACAAATCCACCAAAATCTTAAATTCATCATTTGAAAAAATGAGTACTTTATAGAAATA
178744 ATTATAATTAAATCGTTTTACAAACCAATCAGAGCATA
66 ATTATAATTAAATCGTTTTACAAACCAATCAGAGCATA
178782 TTTCTTTACAAATCCACCAAAATCTTAAATTCATCATTTGAAAAAATGAGTACTTTATAGAAATA
1 TTTCTTTACAAATCCACCAAAATCTTAAATTCATCATTTGAAAAAATGAGTACTTTATAGAAATA
*
178847 ATTATAATTAAATTGTTTTACAAACCAATCAGAGCATA
66 ATTATAATTAAATCGTTTTACAAACCAATCAGAGCATA
178885 TT
1 TT
178887 CAATCCAAAT
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 102 1.00
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (103 bp):
TTTCTTTACAAATCCACCAAAATCTTAAATTCATCATTTGAAAAAATGAGTACTTTATAGAAATA
ATTATAATTAAATCGTTTTACAAACCAATCAGAGCATA
Found at i:179595 original size:23 final size:23
Alignment explanation
Indices: 179580--179660 Score: 117
Period size: 23 Copynumber: 3.5 Consensus size: 23
179570 GTATAAATGT
*
179580 ACCGAAGTGCCACGTATAATTGC
1 ACCGAAGTGCCACGTAGAATTGC
**
179603 ACCGAAGTGCCGTGTAGAATTGC
1 ACCGAAGTGCCACGTAGAATTGC
* *
179626 ACTGAAGTGCCGCGTAGAATTGC
1 ACCGAAGTGCCACGTAGAATTGC
179649 ACCGAAGTGCCA
1 ACCGAAGTGCCA
179661 TATAAAATGT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.28, C:0.25, G:0.27, T:0.20
Consensus pattern (23 bp):
ACCGAAGTGCCACGTAGAATTGC
Found at i:180165 original size:2 final size:2
Alignment explanation
Indices: 180160--180201 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
180150 TATCTTATTC
180160 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
180202 CTACAAATAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:180780 original size:20 final size:20
Alignment explanation
Indices: 180752--180789 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
180742 TTTCCCTTAA
180752 AGTGCATCGATACATTCTAC
1 AGTGCATCGATACATTCTAC
* *
180772 AGTGTATCGATGCATTCT
1 AGTGCATCGATACATTCT
180790 TTAACATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (20 bp):
AGTGCATCGATACATTCTAC
Found at i:180886 original size:64 final size:64
Alignment explanation
Indices: 180816--180958 Score: 162
Period size: 64 Copynumber: 2.2 Consensus size: 64
180806 TATACTACCC
* * * *
180816 ATGCATCGATACACAAATCACCTTCGATGTTT-TAATTTTAAGGCGGTGCATCGATGCACTCCTT
1 ATGCATCGATACACAAATCACATTCGATGTTTCCAATTTTAAGG-GGTACATCGATGCACTCCAT
* * ** * * *
180880 ATGCATCGATGCACTAATTGCATTCGATGTTTCCATTTTTAATGGGTACATCGATGCACTTCAT
1 ATGCATCGATACACAAATCACATTCGATGTTTCCAATTTTAAGGGGTACATCGATGCACTCCAT
*
180944 GTGCATCGATACACA
1 ATGCATCGATACACA
180959 CTGAACAATT
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
64 56 0.88
65 8 0.12
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (64 bp):
ATGCATCGATACACAAATCACATTCGATGTTTCCAATTTTAAGGGGTACATCGATGCACTCCAT
Found at i:181042 original size:21 final size:21
Alignment explanation
Indices: 180989--181034 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
180979 CCCTTGATGT
*
180989 ATCGGTACACATTGAATGTGC
1 ATCGGAACACATTGAATGTGC
181010 ATCGGAACACATTGAATGTGC
1 ATCGGAACACATTGAATGTGC
181031 ATCG
1 ATCG
181035 ATGCACATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (21 bp):
ATCGGAACACATTGAATGTGC
Found at i:183768 original size:14 final size:13
Alignment explanation
Indices: 183741--183781 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
183731 ATACTACATG
*
183741 TTATTATATATTTT
1 TTATTTTAT-TTTT
183755 TTATTTTATGTTTT
1 TTATTTTAT-TTTT
183769 TTATTTTATTTTT
1 TTATTTTATTTTT
183782 CCTCTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 4 0.16
14 21 0.84
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (13 bp):
TTATTTTATTTTT
Found at i:183851 original size:20 final size:20
Alignment explanation
Indices: 183804--183843 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
183794 GTTCTGTTTT
* *
183804 ATTATTTATATTCTTTTTCC
1 ATTATTTTTTTTCTTTTTCC
183824 ATTATTTTTTTTCTTTTTCC
1 ATTATTTTTTTTCTTTTTCC
183844 TGTTTTTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (20 bp):
ATTATTTTTTTTCTTTTTCC
Found at i:188400 original size:39 final size:39
Alignment explanation
Indices: 188341--188421 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
188331 TTTGTGTCTA
*
188341 TGTATAATATGATATGCATATATTAAACATGATGTATCG
1 TGTATAATATGATATACATATATTAAACATGATGTATCG
*
188380 TGTATAATATGATATACATATATTAAGCATGATGTATCG
1 TGTATAATATGATATACATATATTAAACATGATGTATCG
188419 TGT
1 TGT
188422 TTATTATACG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (39 bp):
TGTATAATATGATATACATATATTAAACATGATGTATCG
Found at i:188517 original size:60 final size:60
Alignment explanation
Indices: 188453--188565 Score: 154
Period size: 60 Copynumber: 1.9 Consensus size: 60
188443 GTCATATTCG
* *
188453 TATCATATTTTGATATCTAATAAGATCAAATCGGATAGTTCAAATGAAATTTCTAGTTCA
1 TATCATAATTTGATATCTAATAAGATCAAATCGGATAGATCAAATGAAATTTCTAGTTCA
* * ** * *
188513 TATCATAATTTGATGTCTGATAAGATTGAATTGGATAGATCAAATGGAATTTC
1 TATCATAATTTGATATCTAATAAGATCAAATCGGATAGATCAAATGAAATTTC
188566 AAAATCAGAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 45 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (60 bp):
TATCATAATTTGATATCTAATAAGATCAAATCGGATAGATCAAATGAAATTTCTAGTTCA
Found at i:199419 original size:3 final size:3
Alignment explanation
Indices: 199411--199441 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
199401 TCCTTTACCC
199411 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
199442 GCCTAGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:199731 original size:19 final size:17
Alignment explanation
Indices: 199688--199730 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
199678 TTAATGGATG
199688 AAAATATATTTTAATAT
1 AAAATATATTTTAATAT
199705 AAAATATATTTTAATAT
1 AAAATATATTTTAATAT
199722 AAAATATAT
1 AAAATATAT
199731 AACAATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATATATTTTAATAT
Found at i:200758 original size:15 final size:15
Alignment explanation
Indices: 200740--200791 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
200730 TTATATTAGA
200740 ATTATTTATTAATTT
1 ATTATTTATTAATTT
*
200755 ATTATTTTATTAAATT
1 ATTA-TTTATTAATTT
*
200771 -TTATTGTACTAATTT
1 ATTATT-TATTAATTT
*
200786 TTTATT
1 ATTATT
200792 ACTTTTTGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 2 0.06
15 14 0.45
16 15 0.48
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
ATTATTTATTAATTT
Found at i:203906 original size:17 final size:17
Alignment explanation
Indices: 203884--203916 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
203874 GATAGACATG
203884 ACCATTTTGCATCCAAT
1 ACCATTTTGCATCCAAT
203901 ACCATTTTGCATCCAA
1 ACCATTTTGCATCCAA
203917 GTTTGAGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.30, G:0.06, T:0.33
Consensus pattern (17 bp):
ACCATTTTGCATCCAAT
Found at i:215054 original size:21 final size:22
Alignment explanation
Indices: 215017--215076 Score: 79
Period size: 23 Copynumber: 2.8 Consensus size: 22
215007 TTTTGGTGCA
215017 AAGGGAATCGA-TCCCCCTATG
1 AAGGGAATCGATTCCCCCTATG
*
215038 -AGGGAATCGATTCCCCCTTTG
1 AAGGGAATCGATTCCCCCTATG
*
215059 AAGGGGAACCGATTCCCC
1 AA-GGGAATCGATTCCCC
215077 TCACAGGGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.29
21 9 0.26
22 1 0.03
23 14 0.41
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (22 bp):
AAGGGAATCGATTCCCCCTATG
Found at i:218795 original size:23 final size:23
Alignment explanation
Indices: 218769--218818 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
218759 TTAAATACAT
218769 AATAAGTATTTATATTTTTCTTA
1 AATAAGTATTTATATTTTTCTTA
* *
218792 AATATGTCTTTATATTTTTCTTA
1 AATAAGTATTTATATTTTTCTTA
218815 AATA
1 AATA
218819 GTTTAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (23 bp):
AATAAGTATTTATATTTTTCTTA
Found at i:218829 original size:21 final size:23
Alignment explanation
Indices: 218780--218829 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
218770 ATAAGTATTT
*
218780 ATATTTTTCTTAAATATGTCTTT
1 ATATTTTTCTTAAATATGTCTTA
218803 ATATTTTTCTTAAATA-GT-TTA
1 ATATTTTTCTTAAATATGTCTTA
218824 ATATTT
1 ATATTT
218830 CGGCCCCTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 8 0.31
22 2 0.08
23 16 0.62
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (23 bp):
ATATTTTTCTTAAATATGTCTTA
Found at i:219113 original size:17 final size:17
Alignment explanation
Indices: 219088--219129 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
219078 TTAGAAATGT
*
219088 AATTAAAAATATAATT-A
1 AATTTAAAATAT-ATTGA
219105 AATTTAAAATATATTGA
1 AATTTAAAATATATTGA
219122 AA-TTAAAA
1 AATTTAAAA
219130 GAAATAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
AATTTAAAATATATTGA
Found at i:223133 original size:24 final size:24
Alignment explanation
Indices: 223105--223163 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
223095 CAGTCACCAC
* *
223105 TGCCACATAGAATTTTCACCGAAG
1 TGCCACATAGAATATGCACCGAAG
*
223129 TGCCACGTAGAATATGCACCGAAG
1 TGCCACATAGAATATGCACCGAAG
223153 TGCCACATAGA
1 TGCCACATAGA
223164 TTTGTCTCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.20
Consensus pattern (24 bp):
TGCCACATAGAATATGCACCGAAG
Found at i:223351 original size:60 final size:57
Alignment explanation
Indices: 223281--223420 Score: 156
Period size: 60 Copynumber: 2.4 Consensus size: 57
223271 TTTATTTGAA
* *
223281 TTATCATTTATTCACATAAAACATATACTCATA-CTATTTCACATAGCATTTCCCCAAAAT
1 TTATCATTTATTCACATAAAACATATACTCATAGC-ATTTCACATAACATTT-CCC--AAC
** * * *
223341 TTATCATTTATTCACATAAAGGATTTACTCATAGCATTTTATATAACATTTCCCAAC
1 TTATCATTTATTCACATAAAACATATACTCATAGCATTTCACATAACATTTCCCAAC
* *
223398 TTATCATTTATTCTCATAGAACA
1 TTATCATTTATTCACATAAAACA
223421 AATTCACTTA
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
57 21 0.31
59 3 0.04
60 43 0.63
61 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.04, T:0.39
Consensus pattern (57 bp):
TTATCATTTATTCACATAAAACATATACTCATAGCATTTCACATAACATTTCCCAAC
Found at i:224586 original size:32 final size:32
Alignment explanation
Indices: 224544--224605 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
224534 CCCAAAGGAC
*
224544 CTGTCTATATGTCCCGAA-GGACATAGGTAATT
1 CTGTCCATATGTCCC-AAGGGACATAGGTAATT
224576 CTGTCCATATGTCCCAAGGGACATAGGTAA
1 CTGTCCATATGTCCCAAGGGACATAGGTAA
224606 CCCTCGACTC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 2 0.07
32 26 0.93
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (32 bp):
CTGTCCATATGTCCCAAGGGACATAGGTAATT
Found at i:226281 original size:16 final size:19
Alignment explanation
Indices: 226239--226286 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
226229 CATTTCAAAG
226239 ATGGTATCGATACCATCCTT
1 ATGGTATCGATACCA-CCTT
226259 ATGGTATCGATACC-CC-T
1 ATGGTATCGATACCACCTT
226276 -TGGTATCGATA
1 ATGGTATCGATA
226287 TTGTTCTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 11 0.39
17 1 0.04
18 2 0.07
20 14 0.50
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (19 bp):
ATGGTATCGATACCACCTT
Found at i:235561 original size:21 final size:21
Alignment explanation
Indices: 235537--235588 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
235527 ACTCACTTTG
235537 TCTTCTTCTCCCAAGCTCTCA
1 TCTTCTTCTCCCAAGCTCTCA
235558 TCTTCTTCTCCCAAGCTCTCA
1 TCTTCTTCTCCCAAGCTCTCA
235579 TCTTCTTCTC
1 TCTTCTTCTC
235589 TAGCAACTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.12, C:0.42, G:0.04, T:0.42
Consensus pattern (21 bp):
TCTTCTTCTCCCAAGCTCTCA
Found at i:240950 original size:11 final size:11
Alignment explanation
Indices: 240936--240976 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
240926 TTGCAATTCA
240936 TTTATCTT-TT
1 TTTATCTTATT
240946 CTTTATCTTATT
1 -TTTATCTTATT
*
240958 TTAATCTTATT
1 TTTATCTTATT
240969 TTTATCTT
1 TTTATCTT
240977 GTTTCCAGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 25 0.93
12 2 0.07
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTATCTTATT
Found at i:241324 original size:10 final size:10
Alignment explanation
Indices: 241309--241359 Score: 86
Period size: 10 Copynumber: 5.1 Consensus size: 10
241299 TATTTTTTTC
241309 AAAAAACAAA
1 AAAAAACAAA
241319 AAAAAACAAA
1 AAAAAACAAA
241329 AAAAAAC-AA
1 AAAAAACAAA
241338 AAAAAACAAA
1 AAAAAACAAA
241348 AAAAAACCAAA
1 AAAAAA-CAAA
241359 A
1 A
241360 TTTCAAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.23
10 25 0.64
11 5 0.13
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAACAAA
Found at i:241334 original size:20 final size:20
Alignment explanation
Indices: 241309--241359 Score: 86
Period size: 19 Copynumber: 2.5 Consensus size: 20
241299 TATTTTTTTC
241309 AAAAAACAAAAAAAAACAAA
1 AAAAAACAAAAAAAAACAAA
241329 AAAAAAC-AAAAAAAACAAA
1 AAAAAACAAAAAAAAACAAA
241348 AAAAAACCAAAA
1 AAAAAA-CAAAA
241360 TTTCAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 18 0.62
20 8 0.28
21 3 0.10
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (20 bp):
AAAAAACAAAAAAAAACAAA
Found at i:241369 original size:1 final size:1
Alignment explanation
Indices: 241309--241353 Score: 54
Period size: 1 Copynumber: 45.0 Consensus size: 1
241299 TATTTTTTTC
* * * *
241309 AAAAAACAAAAAAAAACAAAAAAAAACAAAAAAAACAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
241354 CCAAAATTTC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:245566 original size:22 final size:22
Alignment explanation
Indices: 245541--245582 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
245531 CAATTCATTT
245541 ATCTT-TTCTTTATCTTGTTTTA
1 ATCTTATT-TTTATCTTGTTTTA
245563 ATCTTATTTTTATCTTGTTT
1 ATCTTATTTTTATCTTGTTT
245583 CCAACACCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.14, C:0.12, G:0.05, T:0.69
Consensus pattern (22 bp):
ATCTTATTTTTATCTTGTTTTA
Found at i:256424 original size:15 final size:15
Alignment explanation
Indices: 256396--256429 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
256386 GAAATATTCC
*
256396 TTTTTACTTCTATCA
1 TTTTTACTTATATCA
*
256411 TTTTTTCTTATATCA
1 TTTTTACTTATATCA
256426 TTTT
1 TTTT
256430 GAATAGAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTTACTTATATCA
Found at i:261299 original size:20 final size:21
Alignment explanation
Indices: 261262--261300 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
261252 ATATTGATGT
*
261262 GACAGTTCACGGTGTTGACGC
1 GACAGTTCACGATGTTGACGC
261283 GACAGTTCA-GATGTTGAC
1 GACAGTTCACGATGTTGAC
261301 ATGACAATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.26
Consensus pattern (21 bp):
GACAGTTCACGATGTTGACGC
Found at i:261306 original size:20 final size:21
Alignment explanation
Indices: 261261--261306 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
261251 AATATTGATG
* *
261261 TGACAGTTCACGGTGTTGACG
1 TGACAGTTCACGATGTTGACA
*
261282 CGACAGTTCA-GATGTTGACA
1 TGACAGTTCACGATGTTGACA
261302 TGACA
1 TGACA
261307 ATCTATAGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (21 bp):
TGACAGTTCACGATGTTGACA
Found at i:264935 original size:24 final size:24
Alignment explanation
Indices: 264873--264954 Score: 130
Period size: 24 Copynumber: 3.5 Consensus size: 24
264863 AATCTTGTTA
264873 TGATACTTGACCTGGATTCTGATC
1 TGATACTTGACCTGGATTCTGATC
*
264897 TGATA-TTGACATGGATTCTGATC
1 TGATACTTGACCTGGATTCTGATC
* *
264920 TGATACATGACCTGGATTCTGATA
1 TGATACTTGACCTGGATTCTGATC
264944 TGATACTTGAC
1 TGATACTTGAC
264955 TTGAATTATG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
23 22 0.42
24 30 0.58
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.37
Consensus pattern (24 bp):
TGATACTTGACCTGGATTCTGATC
Found at i:266091 original size:32 final size:32
Alignment explanation
Indices: 266055--266131 Score: 127
Period size: 33 Copynumber: 2.4 Consensus size: 32
266045 ACAAAGTTTA
*
266055 CGATAATTGAAATACTTAAATACTTCCAAGTT
1 CGATAATTGAAATACTTAAAAACTTCCAAGTT
*
266087 CGATAAATTCAAATACTTAAAAACTTCCAAGTT
1 CGAT-AATTGAAATACTTAAAAACTTCCAAGTT
266120 CGATAATTGAAA
1 CGATAATTGAAA
266132 CAAAGTTTAC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
32 11 0.27
33 30 0.73
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (32 bp):
CGATAATTGAAATACTTAAAAACTTCCAAGTT
Found at i:266145 original size:21 final size:21
Alignment explanation
Indices: 266120--266159 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
266110 CTTCCAAGTT
266120 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
266141 CGATAATTGAAATAAAGTT
1 CGATAATTGAAACAAAGTT
266160 CAAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:268566 original size:19 final size:20
Alignment explanation
Indices: 268527--268567 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
268517 CGGTTATATT
* *
268527 ATCCGGTTTTAAAATATCTG
1 ATCCGGTTTTAAAAAAACTG
268547 ATCCGG-TTTAAAAAAACTG
1 ATCCGGTTTTAAAAAAACTG
268566 AT
1 AT
268568 TTTTCTCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (20 bp):
ATCCGGTTTTAAAAAAACTG
Found at i:276109 original size:15 final size:15
Alignment explanation
Indices: 276091--276125 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
276081 AAGCTATCAA
276091 GTCTACTGCTATTTG
1 GTCTACTGCTATTTG
*
276106 GTCTACTGTTATTTG
1 GTCTACTGCTATTTG
276121 GTCTA
1 GTCTA
276126 TCGGTCTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.17, G:0.20, T:0.49
Consensus pattern (15 bp):
GTCTACTGCTATTTG
Found at i:278448 original size:12 final size:12
Alignment explanation
Indices: 278420--278465 Score: 53
Period size: 11 Copynumber: 4.1 Consensus size: 12
278410 TCATAGGAGG
*
278420 CATT-AGTTTTA
1 CATTAAGTTTTT
278431 CA-TAAGTTTTT
1 CATTAAGTTTTT
278442 CATTAAG-TTTT
1 CATTAAGTTTTT
*
278453 CTTTAAGTTTTT
1 CATTAAGTTTTT
278465 C
1 C
278466 TTTTGGTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
10 1 0.03
11 20 0.67
12 9 0.30
ACGTcount: A:0.24, C:0.11, G:0.09, T:0.57
Consensus pattern (12 bp):
CATTAAGTTTTT
Found at i:278451 original size:23 final size:22
Alignment explanation
Indices: 278420--278465 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
278410 TCATAGGAGG
278420 CATTAGTTTTAC-ATAAGTTTTT
1 CATTAGTTTT-CTATAAGTTTTT
*
278442 CATTAAGTTTTCTTTAAGTTTTT
1 CATT-AGTTTTCTATAAGTTTTT
278465 C
1 C
278466 TTTTGGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.24, C:0.11, G:0.09, T:0.57
Consensus pattern (22 bp):
CATTAGTTTTCTATAAGTTTTT
Found at i:278466 original size:12 final size:12
Alignment explanation
Indices: 278433--278468 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
278423 TAGTTTTACA
*
278433 TAAGTTTTTCAT
1 TAAGTTTTTCTT
278445 TAAG-TTTTCTT
1 TAAGTTTTTCTT
278456 TAAGTTTTTCTT
1 TAAGTTTTTCTT
278468 T
1 T
278469 TGGTGTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.45
12 12 0.55
ACGTcount: A:0.19, C:0.08, G:0.08, T:0.64
Consensus pattern (12 bp):
TAAGTTTTTCTT
Found at i:281548 original size:33 final size:32
Alignment explanation
Indices: 281509--281613 Score: 115
Period size: 33 Copynumber: 3.2 Consensus size: 32
281499 CCACCAAAAT
281509 ACAACAGCCTCAAAACACTATCGTGAACACCA
1 ACAACAGCCTCAAAACACTATCGTGAACACCA
* * *
281541 ATCAACAGCCTCAAAACACTGTTGTGAACATCGA
1 A-CAACAGCCTCAAAACACTATCGTGAACA-CCA
*
281575 ACAAC-GACCTCAAAACATTATTC-TGAACACCAA
1 ACAACAG-CCTCAAAACACTA-TCGTGAACACC-A
281608 ACAACA
1 ACAACA
281614 ACAACAAACT
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
32 3 0.05
33 53 0.88
34 4 0.07
ACGTcount: A:0.44, C:0.30, G:0.10, T:0.16
Consensus pattern (32 bp):
ACAACAGCCTCAAAACACTATCGTGAACACCA
Found at i:292569 original size:156 final size:156
Alignment explanation
Indices: 292285--292596 Score: 624
Period size: 156 Copynumber: 2.0 Consensus size: 156
292275 GTAAGTAAGG
292285 AGGCTAAACCCCAAGACTCTCAAACTGAATCATTCAATCAGTCTGCAATTTCACATCAACAAAAT
1 AGGCTAAACCCCAAGACTCTCAAACTGAATCATTCAATCAGTCTGCAATTTCACATCAACAAAAT
292350 AACCAGTATACTGCATTAGCCAAAAATCACCCTTCCAAGGCTTCCTCTTCCGTGTCCTCTCTAGC
66 AACCAGTATACTGCATTAGCCAAAAATCACCCTTCCAAGGCTTCCTCTTCCGTGTCCTCTCTAGC
292415 TTCTACAGTAGCTTCACCTGTGACAT
131 TTCTACAGTAGCTTCACCTGTGACAT
292441 AGGCTAAACCCCAAGACTCTCAAACTGAATCATTCAATCAGTCTGCAATTTCACATCAACAAAAT
1 AGGCTAAACCCCAAGACTCTCAAACTGAATCATTCAATCAGTCTGCAATTTCACATCAACAAAAT
292506 AACCAGTATACTGCATTAGCCAAAAATCACCCTTCCAAGGCTTCCTCTTCCGTGTCCTCTCTAGC
66 AACCAGTATACTGCATTAGCCAAAAATCACCCTTCCAAGGCTTCCTCTTCCGTGTCCTCTCTAGC
292571 TTCTACAGTAGCTTCACCTGTGACAT
131 TTCTACAGTAGCTTCACCTGTGACAT
292597 CTCCTTTAAC
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
156 156 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.27
Consensus pattern (156 bp):
AGGCTAAACCCCAAGACTCTCAAACTGAATCATTCAATCAGTCTGCAATTTCACATCAACAAAAT
AACCAGTATACTGCATTAGCCAAAAATCACCCTTCCAAGGCTTCCTCTTCCGTGTCCTCTCTAGC
TTCTACAGTAGCTTCACCTGTGACAT
Found at i:293071 original size:45 final size:46
Alignment explanation
Indices: 292982--293071 Score: 112
Period size: 45 Copynumber: 2.0 Consensus size: 46
292972 ACCCACATCA
* * **
292982 CCCCTACCAGAAGCCCCAATTATTTCTTCATCAGTATCCGCACCAG
1 CCCCTACCAGAAGCCCCAATTATATCATCATCAACATCCGCACCAG
*
293028 CCCC-ACCATAAGCCCCAATTATATCATCATCAACACTCC-CACCA
1 CCCCTACCAGAAGCCCCAATTATATCATCATCAACA-TCCGCACCA
293072 CCACCCTCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
45 31 0.82
46 7 0.18
ACGTcount: A:0.30, C:0.42, G:0.07, T:0.21
Consensus pattern (46 bp):
CCCCTACCAGAAGCCCCAATTATATCATCATCAACATCCGCACCAG
Found at i:310334 original size:6 final size:6
Alignment explanation
Indices: 310325--311956 Score: 3061
Period size: 6 Copynumber: 274.3 Consensus size: 6
310315 ATATACACTC
310325 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
310373 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
310421 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
310469 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
310517 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
310565 ATATGT ATATG- -TATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
310611 ATATGT ATATGT ATATGT ATATGT ATATG- -TATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
310657 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
310705 ATATGT ATATGT ATATGT ATATGT ATATGTAT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATG--T ATATGT ATATGT ATATGT
310755 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
310803 ATATGT ATATGT ATATGT ATATGT ATGTATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT A--TATGT ATATGT ATATGT ATATGT
310853 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
310901 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGTAT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATG--T ATATGT
310951 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
310999 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311047 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311095 ATATGT ATATGT ATATGT ATATGT ATATGT ATATG- -TATGT ATATG-
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
*
311140 -TATGT ATATGT ATATGT ATATGT ATATGT ATATAT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311187 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311235 ATATGT ATATGT ATATGT ATATGT ATATG- -TATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311281 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311329 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311377 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATG-
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311424 -TATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311471 ATATG- -TATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311517 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311565 ATATGT ATATG- -TATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311611 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311659 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311707 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311755 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311803 ATATGT ATATGT ATATG- -TATGT ATATGT ATATGT ATATG- -TATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311847 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311895 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
311943 ATATGT ATATGT AT
1 ATATGT ATATGT AT
311957 GTGCATATTT
Statistics
Matches: 1598, Mismatches: 2, Indels: 52
0.97 0.00 0.03
Matches are distributed among these distances:
4 40 0.03
6 1540 0.96
8 18 0.01
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
ATATGT
Done.