Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000865.1 Hibiscus syriacus cultivar Beakdansim tig00001671_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87587

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7112--7188
38
2.1
37
85
7
102
46
2
1
49
1.23
9277--9346
30
2.3
30
97
0
131
12
15
21
50
1.78
12280--12346
24
2.8
24
88
0
98
25
13
46
14
1.82
39210--39263
2
27.0
2
100
0
108
50
0
0
50
1.00
39785--39886
39
2.6
39
78
6
116
46
9
16
27
1.79
40269--40323
27
2.0
27
100
0
110
25
7
23
43
1.79
44260--44304
24
1.9
23
82
13
56
55
13
4
26
1.57
46590--46668
38
2.1
38
97
0
149
43
7
17
31
1.77
52339--52371
16
2.1
16
88
11
50
30
0
0
69
0.88
53178--53433
102
2.5
101
76
6
237
30
24
19
25
1.98
58242--58267
2
13.0
2
100
0
52
50
0
0
50
1.00
58635--58914
146
1.9
146
88
2
420
48
6
16
27
1.71
60005--60075
29
2.4
29
85
0
88
19
38
28
14
1.91
60005--60090
29
3.0
29
79
6
86
20
38
27
12
1.90
60076--60223
51
2.7
55
88
10
207
21
36
16
25
1.94
60296--60396
29
3.5
29
87
0
130
13
27
37
20
1.91
64912--64988
31
2.5
31
85
2
102
22
12
16
48
1.80
64912--64979
30
2.2
30
89
2
100
22
11
16
50
1.77
65287--65318
13
2.5
13
89
0
55
12
43
6
37
1.68
65849--65929
31
2.6
31
78
3
92
51
12
13
22
1.74
67583--67624
11
3.8
11
78
9
50
61
0
9
28
1.27
70713--70745
2
16.5
2
100
0
66
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74330--74359
2
15.0
2
100
0
60
50
0
0
50
1.00
77658--77746
3
29.7
3
95
0
151
62
2
34
0
1.07
81263--81510
130
1.9
130
91
0
406
35
14
13
36
1.86
81277--81541
130
2.0
129
80
4
291
38
13
13
34
1.84
82130--82172
21
2.0
21
100
0
86
39
0
13
46
1.44
82141--82226
35
2.5
35
84
0
100
37
1
20
40
1.61
85533--85565
16
2.1
16
100
0
66
57
24
12
6
1.57
85635--85699
16
4.1
16
89
0
103
56
23
12
7
1.61
85631--85705
10
7.7
10
71
24
54
57
21
12
9
1.62
86802--86830
14
2.1
14
100
0
58
48
27
17
6
1.72

Tables:   1

The End!