genome.fa.s8652.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008652.1 Hibiscus syriacus cultivar Beakdansim tig00111642_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93609

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2233--2280	20	2.4	20	96	0	87	29	31	16	22	1.96
2428--2460	17	1.9	17	100	0	66	33	36	6	24	1.80
5239--5273	18	1.9	18	88	0	52	57	22	2	17	1.53
5444--5584	20	7.4	20	78	10	143	34	20	19	26	1.96
5597--5641	20	2.2	20	84	0	63	11	15	24	48	1.77
7175--7297	42	2.9	42	79	7	151	23	18	36	21	1.95
7175--7289	21	5.5	21	72	4	88	22	19	36	21	1.95
7774--7816	20	2.2	20	95	0	77	55	23	6	13	1.62
7830--7904	33	2.3	33	83	0	96	10	18	24	46	1.80
7844--7924	33	2.4	33	81	2	90	12	20	22	44	1.85
7896--7944	20	2.5	20	93	0	80	16	22	24	36	1.94
8199--8225	14	1.9	14	100	0	54	7	14	25	51	1.68
8785--8856	20	3.6	20	84	0	81	25	19	29	26	1.99
8882--8918	19	1.9	19	88	0	56	21	16	27	35	1.94
10524--10559	18	2.0	18	100	0	72	33	11	0	55	1.35
11689--11733	22	2.0	22	83	8	56	46	13	11	28	1.77
14331--14368	2	19.0	2	100	0	76	50	0	0	50	1.00
22276--22319	23	2.0	22	86	4	61	45	13	0	40	1.44
22594--22640	21	2.2	20	82	10	58	46	2	10	40	1.50
27075--27393	167	1.9	167	87	5	466	33	12	22	31	1.91
34851--35112	32	8.2	32	84	1	301	31	13	20	33	1.92
34851--35112	96	2.7	96	85	0	344	31	13	20	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41773--41809	20	1.9	20	88	5	58	27	29	27	16	1.97
43791--43824	17	2.0	17	88	0	50	14	2	29	52	1.56
44086--44111	13	2.0	13	100	0	52	38	0	15	46	1.46
45386--45427	13	3.3	14	81	18	56	59	0	0	40	0.97
49191--49223	17	2.0	17	88	5	50	36	0	0	63	0.95
53919--53949	6	5.2	6	100	0	62	16	0	32	51	1.44
56641--56787	76	1.9	76	95	0	267	25	17	18	38	1.92
57928--57981	17	2.9	17	75	17	54	37	1	20	40	1.63
59759--59802	19	2.4	19	84	3	63	43	0	15	40	1.47
59854--59915	30	2.1	29	87	3	88	46	16	3	33	1.63
63262--63315	21	2.6	21	96	0	99	25	16	27	29	1.97
63460--63488	6	5.0	6	95	4	51	31	51	17	0	1.45
64086--64176	22	4.3	22	73	9	91	37	24	17	20	1.94
64122--64226	41	2.6	41	82	10	110	38	20	20	21	1.94
64167--64230	21	3.1	21	68	2	58	40	23	17	18	1.91
77134--77301	3	56.7	3	82	9	211	61	1	1	35	1.14
77591--78489	113	8.0	112	89	2	1367	27	20	14	37	1.91
77596--78485	224	4.0	226	95	2	1526	27	20	14	37	1.91
79036--79803	52	14.7	52	95	1	1328	37	22	14	24	1.93
79036--79803	105	7.4	104	95	1	1337	37	22	14	24	1.93
80743--80785	1	43.0	1	85	0	59	0	6	0	93	0.37
80742--80786	9	5.1	9	86	5	65	0	11	0	88	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93329--93491	3	52.7	3	80	8	184	59	1	1	37	1.16

Tables:   1

The End!