Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000866.1 Hibiscus syriacus cultivar Beakdansim tig00001672_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60199

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6446--6476
3
10.3
3
92
0
53
64
0
3
32
1.09
16561--16594
12
3.1
11
91
8
52
29
52
17
0
1.45
16793--16986
20
9.4
20
83
5
199
19
25
19
36
1.95
16795--16986
40
4.7
40
81
5
231
19
25
19
36
1.95
16804--16986
83
2.2
83
89
0
267
19
25
19
36
1.95
16793--17090
20
14.6
20
76
7
179
17
22
20
38
1.93
17040--17090
19
2.6
20
90
3
77
15
17
23
43
1.88
30373--30446
33
2.3
33
83
4
89
39
2
4
54
1.34
33907--33956
7
7.4
7
78
15
52
48
0
0
52
1.00
33907--33983
34
2.4
32
91
6
120
46
0
0
53
1.00
39112--39169
20
2.9
20
94
5
100
44
10
20
24
1.82
39327--39400
37
2.0
37
82
7
89
47
4
1
47
1.29
40166--40215
14
3.6
14
71
15
50
54
16
18
12
1.72
40165--40228
27
2.3
28
89
2
94
56
15
17
10
1.67
40461--40701
20
11.9
20
76
11
170
39
21
21
17
1.92
40519--40714
40
4.8
40
88
6
261
37
23
21
16
1.93
40523--40714
60
3.1
59
76
12
192
36
23
21
17
1.94
40825--40957
6
22.2
6
100
0
266
33
49
16
0
1.46
41699--41735
6
6.2
6
100
0
74
0
16
48
35
1.46
41770--41849
20
4.1
20
77
1
72
16
17
16
50
1.79
41982--42038
14
4.4
14
70
20
52
57
15
14
12
1.65
43239--43312
28
2.6
28
78
10
69
43
2
9
44
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43239--43294
28
2.0
28
83
13
71
42
1
7
48
1.41
43771--43815
23
2.0
23
82
8
56
33
2
55
8
1.43
45696--45730
17
2.0
18
94
5
63
34
14
17
34
1.90
46948--47019
29
2.4
30
88
4
110
34
8
1
55
1.39
48227--48256
2
15.5
2
93
6
53
53
0
0
46
1.00
48329--48367
19
2.1
19
95
0
69
41
12
0
46
1.42
48504--48541
7
5.3
7
90
3
58
23
0
28
47
1.52
52444--52472
15
1.9
15
100
0
58
41
0
13
44
1.44

Tables:   1

The End!