Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008661.1 Hibiscus syriacus cultivar Beakdansim tig00111659_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1762280
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 7
Found at i:1015446 original size:4 final size:4
Alignment explanation
Indices: 1015437--1015466 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
1015427 ACTTTCGATA
1015437 TTGT TTGT TTGT TTGT TTGT TTGT ATTGT T
1 TTGT TTGT TTGT TTGT TTGT TTGT -TTGT T
1015467 CTCTTATTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.03, C:0.00, G:0.23, T:0.73
Consensus pattern (4 bp):
TTGT
Found at i:1015454 original size:12 final size:13
Alignment explanation
Indices: 1015435--1015466 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
1015425 TGACTTTCGA
1015435 TATTGTTTGTTTG
1 TATTGTTTGTTTG
1015448 T-TTGTTTGTTTG
1 TATTGTTTGTTTG
1015460 TATTGTT
1 TATTGTT
1015467 CTCTTATTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.06, C:0.00, G:0.22, T:0.72
Consensus pattern (13 bp):
TATTGTTTGTTTG
Found at i:1017658 original size:4 final size:4
Alignment explanation
Indices: 1017649--1018270 Score: 1209
Period size: 4 Copynumber: 156.8 Consensus size: 4
1017639 GGTCAGCTTT
1017649 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1017697 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1017745 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1017793 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1017841 GATG GATG GATG GATG GATG GATG GATG GATG GAT- GATG GATG GAT-
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1017887 GATG GATG GATG GATG GATG GAT- GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1017934 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1017982 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1018030 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1018078 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GAT- GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1018125 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GAT- GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1018172 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1018220 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1 GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG GATG
1018268 GAT
1 GAT
1018271 AGATAGATAG
Statistics
Matches: 613, Mismatches: 0, Indels: 10
0.98 0.00 0.02
Matches are distributed among these distances:
3 15 0.02
4 598 0.98
ACGTcount: A:0.25, C:0.00, G:0.50, T:0.25
Consensus pattern (4 bp):
GATG
Found at i:1021903 original size:10 final size:10
Alignment explanation
Indices: 1021890--1021922 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
1021880 ATGAACATAA
1021890 ATAAACGAAC
1 ATAAACGAAC
1021900 ATAAACGAAC
1 ATAAACGAAC
1021910 ATATAACGAAC
1 ATA-AACGAAC
1021921 AT
1 AT
1021923 TCACGAATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.58, C:0.18, G:0.09, T:0.15
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:1026159 original size:22 final size:23
Alignment explanation
Indices: 1026132--1026179 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
1026122 TGCAAAATAT
1026132 ATAATAA-AACTAATTAATA-TTA
1 ATAATAATAA-TAATTAATATTTA
*
1026154 ATAATAATAATATTTAATATTTA
1 ATAATAATAATAATTAATATTTA
1026177 ATA
1 ATA
1026180 TTTTTGGCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
ATAATAATAATAATTAATATTTA
Found at i:1026635 original size:43 final size:42
Alignment explanation
Indices: 1026583--1026702 Score: 136
Period size: 40 Copynumber: 2.9 Consensus size: 42
1026573 ATAACACAGT
*
1026583 TCCTACGTGATGAGGACAACTGGTTATCTAGGGGTGACACGGC
1 TCCTACGTGATGAGGACGACTGG-TATCTAGGGGTGACACGGC
* * * * *
1026626 TCCTACGTGATGAGGAGGTCTGG--TCAAGGGATGACACGGT
1 TCCTACGTGATGAGGACGACTGGTATCTAGGGGTGACACGGC
* *
1026666 TCCTACGTGATGAGGACGATTGGTCATCTAAGGGTGA
1 TCCTACGTGATGAGGACGACTGGT-ATCTAGGGGTGA
1026703 TAATGGTTTC
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
40 34 0.55
43 28 0.45
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.24
Consensus pattern (42 bp):
TCCTACGTGATGAGGACGACTGGTATCTAGGGGTGACACGGC
Found at i:1026704 original size:129 final size:129
Alignment explanation
Indices: 1026437--1026705 Score: 283
Period size: 129 Copynumber: 2.1 Consensus size: 129
1026427 CATCTTTAGG
*** *
1026437 AAGGGTGATAACACGACTTATACGTGATGAAGATTTCTGGTTATCAAGGATTGACACAGCTCCTA
1 AAGGGTGATAACACGACTTATACGTGATGAAGACAACTGGTTATCAAGGAGTGACACAGCTCCTA
*
1026502 CATAATGAGGAGATCTGGTCAGGTGATGACACGACTCATACGCGATGAAGAGTTCTGGCCATCT
66 CATAATGAGGAGATCTGGTCAGGTGATGACACGACTCATACGCGATGAAGAGATCTGGCCATCT
*** * * * * * *
1026566 AAAACTGATAACAC-AGTTCCTACGTGATGAGGACAACTGGTTATCTAGGGGTGACACGGCTCCT
1 AAGGGTGATAACACGACTT-ATACGTGATGAAGACAACTGGTTATCAAGGAGTGACACAGCTCCT
* * * ** * * * *
1026630 ACGTGATGAGGAGGTCTGGTCAAGG-GATGACACGGTTCCTACGTGATGAGGACGAT-TGGTCAT
65 ACATAATGAGGAGATCTGGTC-AGGTGATGACACGACTCATACGCGATGAAGA-GATCTGGCCAT
1026693 CT
128 CT
1026695 AAGGGTGATAA
1 AAGGGTGATAA
1026706 TGGTTTCAAG
Statistics
Matches: 111, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
128 3 0.03
129 103 0.93
130 5 0.05
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (129 bp):
AAGGGTGATAACACGACTTATACGTGATGAAGACAACTGGTTATCAAGGAGTGACACAGCTCCTA
CATAATGAGGAGATCTGGTCAGGTGATGACACGACTCATACGCGATGAAGAGATCTGGCCATCT
Found at i:1026884 original size:35 final size:33
Alignment explanation
Indices: 1026770--1026893 Score: 103
Period size: 33 Copynumber: 3.8 Consensus size: 33
1026760 AGAGACAATA
*
1026770 TTTGTTTCAAGGG-AATGACTCAAAGATG--GT
1 TTTGTTTCAAGGGAAACGACTCAAAGATGTTGT
* * * **
1026800 TTCGTTTCAAGAGAAACAAACTCAAAGAT-TTAA
1 TTTGTTTCAAGGGAAAC-GACTCAAAGATGTTGT
** *
1026833 TTCATTTTAAGGGAAACGATCTCAAAGATGTTTGT
1 TTTGTTTCAAGGGAAACGA-CTCAAAGATG-TTGT
1026868 TTTGTTTCAAGGGAAACCGACTCAAA
1 TTTGTTTCAAGGGAAA-CGACTCAAA
1026894 TATGGGTTTT
Statistics
Matches: 71, Mismatches: 15, Indels: 11
0.73 0.15 0.11
Matches are distributed among these distances:
30 11 0.15
31 2 0.03
32 11 0.15
33 23 0.32
35 21 0.30
36 3 0.04
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (33 bp):
TTTGTTTCAAGGGAAACGACTCAAAGATGTTGT
Found at i:1027047 original size:32 final size:33
Alignment explanation
Indices: 1027007--1027093 Score: 122
Period size: 33 Copynumber: 2.7 Consensus size: 33
1026997 ATAAGATTTG
* *
1027007 TTTCAAGAGAAACGATCTCAAAGATG-GTTTTA
1 TTTCAAGAGAAACAAACTCAAAGATGAGTTTTA
*
1027039 TTTCAAGAGAAACAAACTCAAAGATGATTTTTA
1 TTTCAAGAGAAACAAACTCAAAGATGAGTTTTA
* *
1027072 TTTCAAGTGAAACAAATTCAAA
1 TTTCAAGAGAAACAAACTCAAA
1027094 TTTTGGTGTT
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 24 0.49
33 25 0.51
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.30
Consensus pattern (33 bp):
TTTCAAGAGAAACAAACTCAAAGATGAGTTTTA
Found at i:1028602 original size:99 final size:99
Alignment explanation
Indices: 1028431--1028617 Score: 277
Period size: 99 Copynumber: 1.9 Consensus size: 99
1028421 TAATTTTCCA
* * * *
1028431 TTATCTGGCTAACTGAATTTTATCCATAAAACCGGGGCGTTTAACCAATTGCTCTAGAGGGATAG
1 TTATCAGGCTAACTGAATCTTATCCATAAAACCGGGGCGTTTAACCAATTGCTCTAGAGGGACAA
*
1028496 CTCAAGCTTTATTGTATATATATTATAATCACCT
66 CTCAAGCTTTATTGTATACATATTATAATCACCT
* * * *
1028530 TTATCAGGCTAGA-TGAATCTTATCCATAAAGCTGGGGCGTTTAACCAATTGTTTTAGAGGGACA
1 TTATCAGGCTA-ACTGAATCTTATCCATAAAACCGGGGCGTTTAACCAATTGCTCTAGAGGGACA
1028594 ACTCAAGCTTTATTGTATACATAT
65 ACTCAAGCTTTATTGTATACATAT
1028618 AATATTTTAA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 77 0.99
100 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (99 bp):
TTATCAGGCTAACTGAATCTTATCCATAAAACCGGGGCGTTTAACCAATTGCTCTAGAGGGACAA
CTCAAGCTTTATTGTATACATATTATAATCACCT
Found at i:1033278 original size:32 final size:32
Alignment explanation
Indices: 1033201--1033278 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
1033191 TACAATCAAG
* *
1033201 AGAAATAAATTAGTGTACATAAACAAAAGGAA
1 AGAAATAAATTAATGTACACAAACAAAAGGAA
* *
1033233 AGAAATGAGTTAATGTACACAAACAAAAGGAA
1 AGAAATAAATTAATGTACACAAACAAAAGGAA
* *
1033265 ATAAATCAATTAAT
1 AGAAATAAATTAAT
1033279 ACAGGTGAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.21
Consensus pattern (32 bp):
AGAAATAAATTAATGTACACAAACAAAAGGAA
Found at i:1037110 original size:22 final size:23
Alignment explanation
Indices: 1037083--1037130 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
1037073 TGCAAAATAT
1037083 ATAATAA-AACTAATTAATA-TTA
1 ATAATAATAA-TAATTAATATTTA
*
1037105 ATAATAATAATATTTAATATTTA
1 ATAATAATAATAATTAATATTTA
1037128 ATA
1 ATA
1037131 TTTTTGGCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
ATAATAATAATAATTAATATTTA
Found at i:1040251 original size:17 final size:18
Alignment explanation
Indices: 1040231--1040265 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
1040221 CATAAAAACG
*
1040231 CCGCTATATG-AAAAAAA
1 CCGCTAAATGCAAAAAAA
1040248 CCGCTAAATGCAAAAAAA
1 CCGCTAAATGCAAAAAAA
1040266 AAAAAACCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.54, C:0.20, G:0.11, T:0.14
Consensus pattern (18 bp):
CCGCTAAATGCAAAAAAA
Found at i:1040957 original size:36 final size:37
Alignment explanation
Indices: 1040893--1040962 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 37
1040883 AATCGATATT
* ** *
1040893 GTTTTGATGTAGCTATATAATCCTCTAAAATGATGTC
1 GTTTTGAAGTAGCTATATAAAACACTAAAATGATGTC
*
1040930 GTTTTGAAGTA-CTATATAAAACACTAAATTGAT
1 GTTTTGAAGTAGCTATATAAAACACTAAAATGAT
1040963 ATAATTACAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
36 18 0.64
37 10 0.36
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (37 bp):
GTTTTGAAGTAGCTATATAAAACACTAAAATGATGTC
Found at i:1046025 original size:12 final size:12
Alignment explanation
Indices: 1046008--1046032 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1045998 TTTCACCCTT
1046008 CACTCTAATTTC
1 CACTCTAATTTC
1046020 CACTCTAATTTC
1 CACTCTAATTTC
1046032 C
1 C
1046033 TGTGCCATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (12 bp):
CACTCTAATTTC
Found at i:1050368 original size:3 final size:3
Alignment explanation
Indices: 1050362--1050425 Score: 51
Period size: 3 Copynumber: 20.7 Consensus size: 3
1050352 TTTATTTAAA
* *
1050362 TAT TATT TAT ATAT TAT TAT AAA TAT TAT TAT T-T ATAT TAT T-T ATAT
1 TAT TA-T TAT -TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT
*
1050409 TAT TAA TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
1050426 CAAACGGGCC
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
2 2 0.04
3 39 0.80
4 8 0.16
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:1050389 original size:12 final size:11
Alignment explanation
Indices: 1050353--1050421 Score: 65
Period size: 12 Copynumber: 6.5 Consensus size: 11
1050343 CTTCATTTTT
1050353 TTATTTAAATA
1 TTATTTAAATA
*
1050364 TTATTTATATA
1 TTATTTAAATA
1050375 TTATTATAAATA
1 TTATT-TAAATA
**
1050387 TTATTATTTATA
1 TTATT-TAAATA
1050399 TTATTT--ATA
1 TTATTTAAATA
1050408 TTA-TT-AATA
1 TTATTTAAATA
1050417 TTATT
1 TTATT
1050422 ATTACAAACG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
8 2 0.04
9 12 0.24
10 1 0.02
11 16 0.31
12 20 0.39
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TTATTTAAATA
Found at i:1050400 original size:9 final size:9
Alignment explanation
Indices: 1050388--1050421 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
1050378 TTATAAATAT
1050388 TATTATTTA
1 TATTATTTA
1050397 TATTATTTA
1 TATTATTTA
*
1050406 TATTATTAA
1 TATTATTTA
1050415 TATTATT
1 TATTATT
1050422 ATTACAAACG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TATTATTTA
Found at i:1063195 original size:13 final size:12
Alignment explanation
Indices: 1063178--1063285 Score: 114
Period size: 12 Copynumber: 8.7 Consensus size: 12
1063168 ATTATGCTTG
1063178 AAGAAAAAAAAA
1 AAGAAAAAAAAA
*
1063190 GAAGAAAAGAAAAG
1 -AAGAAAA-AAAAA
1063204 AAGAAAAGAAAAA
1 AAGAAAA-AAAAA
1063217 AA-AAGAAAAAAA
1 AAGAA-AAAAAAA
1063229 AAGAAAAAAAAA
1 AAGAAAAAAAAA
*
1063241 GAA-AAAAGAAAA
1 -AAGAAAAAAAAA
1063253 AAGAAAAAAAGAA
1 AAGAAAAAAA-AA
1063266 AA-AAAAAAGAAA
1 AAGAAAAAA-AAA
1063278 AAGAAAAA
1 AAGAAAAA
1063286 GGGGGGTCAA
Statistics
Matches: 83, Mismatches: 4, Indels: 16
0.81 0.04 0.16
Matches are distributed among these distances:
11 2 0.02
12 40 0.48
13 37 0.45
14 4 0.05
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (12 bp):
AAGAAAAAAAAA
Found at i:1063197 original size:10 final size:10
Alignment explanation
Indices: 1063178--1063284 Score: 126
Period size: 10 Copynumber: 10.2 Consensus size: 10
1063168 ATTATGCTTG
1063178 AAGAAAAAAA
1 AAGAAAAAAA
1063188 AAGAAGAAAAGA
1 AAGAA-AAAA-A
* *
1063200 AA-AGAAGAA
1 AAGAAAAAAA
1063209 AAGAAAAAAA
1 AAGAAAAAAA
1063219 AAGAAAAAAA
1 AAGAAAAAAA
1063229 AAGAAAAAAA
1 AAGAAAAAAA
1063239 AAGAAAAAAGA
1 AAGAAAAAA-A
*
1063250 AAAAAGAAAAA
1 AAGAA-AAAAA
1063261 AAGAAAAAAAA
1 AAG-AAAAAAA
1063272 AAGAAAAAGAA
1 AAGAAAAA-AA
1063283 AA
1 AA
1063285 AGGGGGGTCA
Statistics
Matches: 84, Mismatches: 6, Indels: 13
0.82 0.06 0.13
Matches are distributed among these distances:
9 3 0.04
10 47 0.56
11 25 0.30
12 9 0.11
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAGAAAAAAA
Found at i:1063199 original size:8 final size:7
Alignment explanation
Indices: 1063184--1063285 Score: 115
Period size: 7 Copynumber: 14.7 Consensus size: 7
1063174 CTTGAAGAAA
1063184 AAAAAAG
1 AAAAAAG
1063191 AAGAAAAG
1 AA-AAAAG
1063199 AAAAGAAG
1 AAAA-AAG
*
1063207 AAAAGAAA
1 AAAA-AAG
1063215 AAAAAAG
1 AAAAAAG
1063222 AAAAAA-
1 AAAAAAG
1063228 AAAGAAA-
1 AAA-AAAG
1063235 AAAAAAG
1 AAAAAAG
1063242 AAAAAAG
1 AAAAAAG
1063249 AAAAAAG
1 AAAAAAG
1063256 AAAAAA-
1 AAAAAAG
*
1063262 AGAAAA-
1 AAAAAAG
1063268 AAAAAAG
1 AAAAAAG
1063275 -AAAAAG
1 AAAAAAG
1063281 AAAAA
1 AAAAA
1063286 GGGGGGTCAA
Statistics
Matches: 85, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
6 22 0.26
7 42 0.49
8 21 0.25
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:1063228 original size:43 final size:40
Alignment explanation
Indices: 1063181--1063285 Score: 142
Period size: 43 Copynumber: 2.5 Consensus size: 40
1063171 ATGCTTGAAG
1063181 AAAAAAAAAGAAGAAAAGAAAAGAAGAAAAGAA-AAAAAAAGAA
1 AAAAAAAAAGAA-AAAAGAAAA-AAGAAAA-AAGAAAAAAAG-A
*
1063224 AAAAAAAGAAAAAAAAAGAAAAAAGAAAAAAGAAAAAAAGA
1 AAAAAAA-AAGAAAAAAGAAAAAAGAAAAAAGAAAAAAAGA
1063265 AAAAAAAAAG-AAAAAGAAAAA
1 AAAAAAAAAGAAAAAAGAAAAA
1063286 GGGGGGTCAA
Statistics
Matches: 58, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
39 11 0.19
40 2 0.03
41 10 0.17
42 15 0.26
43 16 0.28
44 4 0.07
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (40 bp):
AAAAAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAAAAGA
Found at i:1063235 original size:38 final size:39
Alignment explanation
Indices: 1063178--1063284 Score: 136
Period size: 37 Copynumber: 2.9 Consensus size: 39
1063168 ATTATGCTTG
* *
1063178 AAGAAAAAAAAAGAAGAAAAGA-AAAGAAGAAAAGAAAA
1 AAGAAAAAAAAAAAAGAAAAAAGAAAGAAGAAAAGAAAA
1063216 AA-AAAGAAAAAAAAAGAAAAAA-AAAGAA-AAAAGAAAA
1 AAGAAA-AAAAAAAAAGAAAAAAGAAAGAAGAAAAGAAAA
*
1063253 AAGAAAAAAAGAAAA-AAAAAAGAAA-AAGAAAA
1 AAGAAAAAAAAAAAAGAAAAAAGAAAGAAGAAAA
1063285 AGGGGGGTCA
Statistics
Matches: 62, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
36 8 0.13
37 29 0.47
38 25 0.40
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (39 bp):
AAGAAAAAAAAAAAAGAAAAAAGAAAGAAGAAAAGAAAA
Found at i:1063303 original size:1 final size:1
Alignment explanation
Indices: 1063181--1063285 Score: 84
Period size: 1 Copynumber: 105.0 Consensus size: 1
1063171 ATGCTTGAAG
* * * * * * * * *
1063181 AAAAAAAAAGAAGAAAAGAAAAGAAGAAAAGAAAAAAAAAGAAAAAAAAAGAAAAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
1063246 AAGAAAAAAGAAAAAAAGAAAAAAAAAAGAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1063286 GGGGGGTCAA
Statistics
Matches: 76, Mismatches: 28, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 76 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (1 bp):
A
Found at i:1064780 original size:83 final size:83
Alignment explanation
Indices: 1064643--1064864 Score: 372
Period size: 83 Copynumber: 2.7 Consensus size: 83
1064633 AACAAATGCC
* *
1064643 ATGTGCTCATAGCATCTTCTAGAAGTGGTCTTTGAGTTATCTGATCTGATTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTAAAATCAATC
*
1064708 ATTGAATTTGGAAGATAA
66 ATTGAATTTGGAAGAGAA
* *
1064726 ATGTGCTAATAGCGTCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTAAAATCAATC
*
1064791 ATTGAATTTGGAAGAGGA
66 ATTGAATTTGGAAGAGAA
* *
1064809 ATGTGCTCATATCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTA
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTA
1064865 TGAAACCACA
Statistics
Matches: 129, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 129 1.00
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.39
Consensus pattern (83 bp):
ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTAAAATCAATC
ATTGAATTTGGAAGAGAA
Found at i:1065916 original size:112 final size:111
Alignment explanation
Indices: 1065719--1065984 Score: 383
Period size: 112 Copynumber: 2.4 Consensus size: 111
1065709 ATCATTCGGT
* * ** *
1065719 GATCAACATTTCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGAATAAGGAAGAAGAAGTTCA
1 GATCAACATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
1065784 AATGAGAAGAATTTGTTCAACCTTTTGCTCGAATTCATCACTTGATG
66 AATGAGAAGAATTTGTTCAACCTTTTGCTCGAA-TCATCACTTGATG
* *
1065831 GATCAACTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTC
1 GATCAACATTGCCAG-GTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTC
* * **
1065895 ATAATGAGAAGAA-TTGTTCAACCTTTTGTTTGAATCATCGTTTGATG
65 A-AATGAGAAGAATTTGTTCAACCTTTTGCTCGAATCATCACTTGATG
*
1065942 GATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAACTCATC
1 GATCAACATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATC
1065985 ATCTGAAGAA
Statistics
Matches: 139, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
110 1 0.01
111 49 0.35
112 78 0.56
113 11 0.08
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (111 bp):
GATCAACATTGCCAGGTAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
AATGAGAAGAATTTGTTCAACCTTTTGCTCGAATCATCACTTGATG
Found at i:1066424 original size:124 final size:122
Alignment explanation
Indices: 1066189--1066424 Score: 296
Period size: 124 Copynumber: 1.9 Consensus size: 122
1066179 TCGTCATATG
* * * * *
1066189 GAGAAGAATTTATTCAACTTTTTGCATAATTCTATCACAAAAGGAGATAGATCAGCATCAACCTT
1 GAGAAGAACTTATTCAACCTTTTGCATAACTCTATCACAAAAGGAAATAGATCAACATCAACC--
1066254 TCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCATAAT
64 TCCAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCATAAT
* * * * * *
1066313 GAGAAGAGCTTATTCAACCTTTTGGATGACTCTATCACAGAAGGAAATAGGTCAACATCATCC-C
1 GAGAAGAACTTATTCAACCTTTTGCATAACTCTATCACAAAAGGAAATAGATCAACATCAACCTC
* * * *
1066377 CAGCGGAAAGTTCGTAATGAGAAGAACTCATCTGAAGAA-AGAGAAGAA
66 CAG-AGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAAGAAGAA
1066425 TTTATTAAAC
Statistics
Matches: 96, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
121 12 0.12
122 32 0.33
124 52 0.54
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (122 bp):
GAGAAGAACTTATTCAACCTTTTGCATAACTCTATCACAAAAGGAAATAGATCAACATCAACCTC
CAGAGAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCATAAT
Found at i:1066588 original size:9 final size:9
Alignment explanation
Indices: 1066574--1066632 Score: 70
Period size: 9 Copynumber: 6.9 Consensus size: 9
1066564 TTTTATTTAA
1066574 ATATTATTT
1 ATATTATTT
1066583 ATATTA-TT
1 ATATTATTT
* *
1066591 ATA-AATAT
1 ATATTATTT
1066599 -TATTATTT
1 ATATTATTT
1066607 ATATTATTT
1 ATATTATTT
*
1066616 ATATTATTA
1 ATATTATTT
1066625 ATATTATT
1 ATATTATT
1066633 ATTACAAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
7 3 0.07
8 9 0.21
9 30 0.71
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (9 bp):
ATATTATTT
Found at i:1066596 original size:21 final size:21
Alignment explanation
Indices: 1066566--1066634 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
1066556 CTTCATTTTT
1066566 TTATT-TAAATATTATTTATA
1 TTATTATAAATATTATTTATA
*
1066586 TTATTATAAATATTA-TTATT
1 TTATTATAAATATTATTTATA
** *
1066606 TATATTATTTATATTATTAATA
1 T-TATTATAAATATTATTTATA
1066628 TTATTAT
1 TTATTAT
1066635 TACAAACAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
20 10 0.24
21 27 0.66
22 4 0.10
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTATTATAAATATTATTTATA
Found at i:1066624 original size:12 final size:12
Alignment explanation
Indices: 1066566--1066614 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
1066556 CTTCATTTTT
*
1066566 TTATTTA-AATA
1 TTATTTATATTA
1066577 TTATTTATATTA
1 TTATTTATATTA
**
1066589 TTATAAATATTA
1 TTATTTATATTA
1066601 TTATTTATATTA
1 TTATTTATATTA
1066613 TT
1 TT
1066615 TATATTATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
11 7 0.22
12 25 0.78
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TTATTTATATTA
Found at i:1066632 original size:12 final size:12
Alignment explanation
Indices: 1066575--1066636 Score: 64
Period size: 12 Copynumber: 5.7 Consensus size: 12
1066565 TTTATTTAAA
*
1066575 TATTATTTATAT
1 TATTATTAATAT
*
1066587 TATTATAAATAT
1 TATTATTAATAT
1066599 TATTATT--TA-
1 TATTATTAATAT
1066608 TATTATT--TA-
1 TATTATTAATAT
1066617 TATTATTAATAT
1 TATTATTAATAT
1066629 TATTATTA
1 TATTATTA
1066637 CAAACAGGCC
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
9 16 0.36
10 2 0.05
11 2 0.05
12 24 0.55
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TATTATTAATAT
Found at i:1066636 original size:33 final size:33
Alignment explanation
Indices: 1066574--1066635 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
1066564 TTTTATTTAA
1066574 ATATTATTTATATTATTATAAATATTATTATTT
1 ATATTATTTATATTATTATAAATATTATTATTT
1066607 ATATTATTTATATTA-T-T-AATATTATTATT
1 ATATTATTTATATTATTATAAATATTATTATT
1066636 ACAAACAGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 12 0.41
31 1 0.03
32 1 0.03
33 15 0.52
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (33 bp):
ATATTATTTATATTATTATAAATATTATTATTT
Found at i:1069264 original size:33 final size:33
Alignment explanation
Indices: 1069225--1069290 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
1069215 GATGTGAGCT
1069225 TTGATTGTGTTGGCTTCAACAAATCCATTACTA
1 TTGATTGTGTTGGCTTCAACAAATCCATTACTA
1069258 TTGATTGTGTTGGCTTCAACAAATCCATTACTA
1 TTGATTGTGTTGGCTTCAACAAATCCATTACTA
1069291 CAGCTTTGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (33 bp):
TTGATTGTGTTGGCTTCAACAAATCCATTACTA
Found at i:1071913 original size:52 final size:51
Alignment explanation
Indices: 1071837--1071941 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 51
1071827 TGGAGATGCT
1071837 CTGTGAAGCGTCACCACCGTGGAAGGAAGAAAACGATTTGCAGATATATGG
1 CTGTGAAGCGTCACCACCGTGGAAGGAAGAAAACGATTTGCAGATATATGG
1071888 CTGTGAAGCGTCAACCACCGTGGAAGGAAGAAAACGATTTGCAGATATATGG
1 CTGTGAAGCGTC-ACCACCGTGGAAGGAAGAAAACGATTTGCAGATATATGG
1071940 CT
1 CT
1071942 CATTGATTCG
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 12 0.23
52 41 0.77
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (51 bp):
CTGTGAAGCGTCACCACCGTGGAAGGAAGAAAACGATTTGCAGATATATGG
Found at i:1084896 original size:40 final size:40
Alignment explanation
Indices: 1084838--1084948 Score: 161
Period size: 40 Copynumber: 2.8 Consensus size: 40
1084828 ACCGTAGTGC
1084838 TACACATAAGGTCA-TGCCCACCATATACACTGAAGTGTAT
1 TACACATAAGGT-AGTGCCCACCATATACACTGAAGTGTAT
* *
1084878 TAGACATAAGGTAGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTAGTGCCCACCATATACACTGAAGTGTAT
* * *
1084918 TACACATAAGGTCGTGCCTACCATGTACACT
1 TACACATAAGGTAGTGCCCACCATATACACT
1084949 TAGTGTCCTT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
39 1 0.02
40 62 0.98
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (40 bp):
TACACATAAGGTAGTGCCCACCATATACACTGAAGTGTAT
Found at i:1084961 original size:40 final size:39
Alignment explanation
Indices: 1084838--1084963 Score: 153
Period size: 40 Copynumber: 3.2 Consensus size: 39
1084828 ACCGTAGTGC
*
1084838 TACACATAAGGTCATGCCCACCATATACACTGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACACT-AAGTGTAT
* * *
1084878 TAGACATAAGGTAGTGCCCACCATATACACCGAAGTGTAT
1 TACACATAAGGTCGTGCCCACCATATACA-CTAAGTGTAT
* * * *
1084918 TACACATAAGGTCGTGCCTACCATGTACACTTAGTGTCCT
1 TACACATAAGGTCGTGCCCACCATATACACTAAGTGT-AT
1084958 TACACA
1 TACACA
1084964 CTATAGTGTA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
39 6 0.08
40 66 0.90
41 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (39 bp):
TACACATAAGGTCGTGCCCACCATATACACTAAGTGTAT
Found at i:1086848 original size:30 final size:30
Alignment explanation
Indices: 1086794--1086876 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 30
1086784 ACCCATATGT
* *
1086794 AACTTTTTAAAA-TTACATTTTGGTC-CCTA
1 AACTTTTTAAAATTTATAATTTGGTCACC-A
*
1086823 AACTTTTTAAAATTTATACTTTGGTCACCA
1 AACTTTTTAAAATTTATAATTTGGTCACCA
***
1086853 AACTTTACCAAATTTATAATTTGG
1 AACTTTTTAAAATTTATAATTTGG
1086877 ACACTAAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
29 12 0.26
30 32 0.70
31 2 0.04
ACGTcount: A:0.34, C:0.16, G:0.07, T:0.43
Consensus pattern (30 bp):
AACTTTTTAAAATTTATAATTTGGTCACCA
Found at i:1090913 original size:16 final size:16
Alignment explanation
Indices: 1090892--1090923 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1090882 TTAATGTTAT
1090892 TTTAAAATTAAATTAA
1 TTTAAAATTAAATTAA
*
1090908 TTTAAATTTAAATTAA
1 TTTAAAATTAAATTAA
1090924 ATTTTTCTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTTAAAATTAAATTAA
Found at i:1091795 original size:14 final size:13
Alignment explanation
Indices: 1091757--1091802 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
1091747 ATTTTTATTT
*
1091757 TTAAAATAAAATA
1 TTAAAATAATATA
1091770 TTAAAATAATATA
1 TTAAAATAATATA
*
1091783 TTAATATTAATATA
1 TTAA-AATAATATA
1091797 TTAAAA
1 TTAAAA
1091803 GATAACAGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TTAAAATAATATA
Found at i:1093273 original size:51 final size:51
Alignment explanation
Indices: 1093196--1093292 Score: 167
Period size: 51 Copynumber: 1.9 Consensus size: 51
1093186 TGGTTCTCTT
*
1093196 TAGAATATTACAATTTTTTATCAATAAAATTCAGAGAGTGTCGCATATCTG
1 TAGAATATTACAAGTTTTTATCAATAAAATTCAGAGAGTGTCGCATATCTG
* *
1093247 TAGAATATTATAAGTTTTTATGAATAAAATTCAGAGAGTGTCGCAT
1 TAGAATATTACAAGTTTTTATCAATAAAATTCAGAGAGTGTCGCAT
1093293 CTCTTTCTCT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (51 bp):
TAGAATATTACAAGTTTTTATCAATAAAATTCAGAGAGTGTCGCATATCTG
Found at i:1103643 original size:31 final size:31
Alignment explanation
Indices: 1103603--1103665 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
1103593 CAAACGATTC
1103603 TCTGAATTCTTGATTGAAATCAAAGTTCTTT
1 TCTGAATTCTTGATTGAAATCAAAGTTCTTT
* *
1103634 TCTGCATTCTTGATTGAAATCAAAGTTTTTT
1 TCTGAATTCTTGATTGAAATCAAAGTTCTTT
1103665 T
1 T
1103666 TCTCTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.48
Consensus pattern (31 bp):
TCTGAATTCTTGATTGAAATCAAAGTTCTTT
Found at i:1105333 original size:27 final size:27
Alignment explanation
Indices: 1105297--1105359 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
1105287 TAGTGCTTGG
*
1105297 TTGAGAGGTTAGATGCTAGTGCTGACA
1 TTGAGTGGTTAGATGCTAGTGCTGACA
*
1105324 TTGAGTGGTTAGATGCTAGTGCTGACG
1 TTGAGTGGTTAGATGCTAGTGCTGACA
1105351 TTGAGTGGT
1 TTGAGTGGT
1105360 ATTTTCGTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.21, C:0.10, G:0.37, T:0.33
Consensus pattern (27 bp):
TTGAGTGGTTAGATGCTAGTGCTGACA
Found at i:1110614 original size:36 final size:36
Alignment explanation
Indices: 1110573--1110645 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
1110563 AGATGATAAT
1110573 ACACAATGGCCAGACTAATAAGAGAGATGCCATTTG
1 ACACAATGGCCAGACTAATAAGAGAGATGCCATTTG
*
1110609 ACACAATGGCCAGACTAATAAGAGGGATGCCATTTG
1 ACACAATGGCCAGACTAATAAGAGAGATGCCATTTG
1110645 A
1 A
1110646 ATGGTTTCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.19
Consensus pattern (36 bp):
ACACAATGGCCAGACTAATAAGAGAGATGCCATTTG
Found at i:1115970 original size:20 final size:21
Alignment explanation
Indices: 1115927--1115970 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
1115917 TGTAACAAGG
* *
1115927 ATAAAATTGAGTTAAAAGAAT
1 ATAAAATTGAATTAAAACAAT
*
1115948 ATAAAA-TGAATTAAAACATT
1 ATAAAATTGAATTAAAACAAT
1115968 ATA
1 ATA
1115971 GGAGCATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (21 bp):
ATAAAATTGAATTAAAACAAT
Found at i:1120995 original size:42 final size:42
Alignment explanation
Indices: 1120936--1121015 Score: 160
Period size: 42 Copynumber: 1.9 Consensus size: 42
1120926 CAAGCTATAT
1120936 TCTCTGACATGGTTGAGGATTATCTTGAGATTTTCATGAATG
1 TCTCTGACATGGTTGAGGATTATCTTGAGATTTTCATGAATG
1120978 TCTCTGACATGGTTGAGGATTATCTTGAGATTTTCATG
1 TCTCTGACATGGTTGAGGATTATCTTGAGATTTTCATG
1121016 GATGATTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.23, C:0.12, G:0.24, T:0.41
Consensus pattern (42 bp):
TCTCTGACATGGTTGAGGATTATCTTGAGATTTTCATGAATG
Found at i:1130476 original size:21 final size:21
Alignment explanation
Indices: 1130450--1130491 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1130440 CCAGAATGGG
*
1130450 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
1130471 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
1130492 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:1130621 original size:19 final size:19
Alignment explanation
Indices: 1130597--1130643 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
1130587 GAGCCTCGGA
*
1130597 TACTGTTCAAATAGTAATT
1 TACTGTTCAAATAGTAAAT
1130616 TACTGTTCAAATAGTAAAT
1 TACTGTTCAAATAGTAAAT
*
1130635 TACTATTCA
1 TACTGTTCA
1130644 TAAAAACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (19 bp):
TACTGTTCAAATAGTAAAT
Found at i:1136548 original size:32 final size:32
Alignment explanation
Indices: 1136397--1136580 Score: 137
Period size: 31 Copynumber: 5.8 Consensus size: 32
1136387 TCGACAACTA
* * *
1136397 TCCATAGGTCCCG-AAGAACCTAGGTAA-ACTG
1 TCCATATGTCCCGAAAG-ACATAGGTAATTCTG
* ** *
1136428 TCCATATGTTCC-TTAGAACATAGGT-ATACTG
1 TCCATATGTCCCGAAAG-ACATAGGTAATTCTG
* * * *
1136459 TCCATATGTCTCAAAATACACAGGTAATTCTG
1 TCCATATGTCCCGAAAGACATAGGTAATTCTG
** *
1136491 TCCATA-GTCATGAAAAACATAGGTAATTCTG
1 TCCATATGTCCCGAAAGACATAGGTAATTCTG
* *
1136522 TCCATTTGTCCCGAAAGACATAGGTAATTATG
1 TCCATATGTCCCGAAAGACATAGGTAATTCTG
* *
1136554 TCCATATGTTCCG-TAGAACATAGGTAA
1 TCCATATGTCCCGAAAG-ACATAGGTAA
1136581 ATCCTCGACT
Statistics
Matches: 123, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
30 1 0.01
31 68 0.55
32 54 0.44
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (32 bp):
TCCATATGTCCCGAAAGACATAGGTAATTCTG
Found at i:1136769 original size:5 final size:5
Alignment explanation
Indices: 1136759--1136851 Score: 133
Period size: 5 Copynumber: 19.2 Consensus size: 5
1136749 TGTATATATC
1136759 ATCAT ATCAT ATCAT ATC-- ATCAT ATCAT ATCAT ATCAT ATCAT ATCATAT
1 ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT ATC--AT
1136809 ATCAT ATCAT AT-A- ATCAT -TCAT ATCAT ATCAT ATCAT ATCAT A
1 ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT ATCAT A
1136852 CACAGCATGT
Statistics
Matches: 81, Mismatches: 0, Indels: 14
0.85 0.00 0.15
Matches are distributed among these distances:
3 5 0.06
4 6 0.07
5 65 0.80
7 5 0.06
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.40
Consensus pattern (5 bp):
ATCAT
Found at i:1140954 original size:39 final size:38
Alignment explanation
Indices: 1140880--1141015 Score: 116
Period size: 39 Copynumber: 3.5 Consensus size: 38
1140870 GGCTCATCGA
*
1140880 CTTTGTGCTTAGGGTAAGT-CAATACC-ACGGACTCCTCAG
1 CTTTGTGCTTAGGGTAAGTCCTA-ACCTA-GG-CTCCTCAG
*
1140919 CTTTGTGCTTAGGGTAAGTCCTAACCTTAGGCTCCTCGG
1 CTTTGTGCTTAGGGTAAGTCCTAACC-TAGGCTCCTCAG
* * * * *
1140958 CTTTGTGCTTAAGATAAGTCCTTATA-GTAGGCTCCCCAA
1 CTTTGTGCTTAGGGTAAGTCC-TA-ACCTAGGCTCCTCAG
* *
1140997 CTTTGTGATCAGGGTAAGT
1 CTTTGTGCTTAGGGTAAGT
1141016 TCATATCGCA
Statistics
Matches: 80, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
39 72 0.90
40 6 0.08
41 2 0.03
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (38 bp):
CTTTGTGCTTAGGGTAAGTCCTAACCTAGGCTCCTCAG
Found at i:1143565 original size:3 final size:3
Alignment explanation
Indices: 1143557--1143583 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
1143547 TAAATAGGGC
1143557 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1143584 ATTTTAGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:1144084 original size:39 final size:39
Alignment explanation
Indices: 1144041--1144152 Score: 102
Period size: 39 Copynumber: 2.9 Consensus size: 39
1144031 TTGTATTTAG
* *
1144041 GGTAAGTCATTTCTGCAGGCTCCTCAGTTTTGTGCTCAA
1 GGTAAGTCATTACTGCAGGCTCCTCAGATTTGTGCTCAA
* * * *
1144080 GGTAAGACCTTACCT-CATGCTCCT-AGGATTTGTGCTCAG
1 GGTAAGTCATTA-CTGCAGGCTCCTCA-GATTTGTGCTCAA
* * * *
1144119 GGTAAGTCATTACCGTAGGCTCCTCTGCTTTGTG
1 GGTAAGTCATTACTGCAGGCTCCTCAGATTTGTG
1144153 AACAGGATAA
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
38 2 0.04
39 52 0.93
40 2 0.04
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (39 bp):
GGTAAGTCATTACTGCAGGCTCCTCAGATTTGTGCTCAA
Found at i:1151889 original size:945 final size:950
Alignment explanation
Indices: 1149697--1152984 Score: 5429
Period size: 942 Copynumber: 3.5 Consensus size: 950
1149687 GAATTTGATT
* * *
1149697 TAGAGATTGTAGATAGGAAAGGTAATGAGAATCAAGTCACTGACCATATTTCTAGGCTAGAGAAC
1 TAGAGGTTGTAGATAAGAAAGGTAATGAGAATCAAGTTACTGACCATATTTCTAGGCTAGAGAAC
* *
1149762 AATTCAGCAAGCCATGACAACTTAGATATTAAAGAGAAATTCCCTAATGAGGAAATTTTACATGC
66 AATTCAGCAAGCCATGTCAACTTAGATATTAAAGAGAAATTCCCTAATGAGAAAATTTTACATGC
* * * * * * *
1149827 TATGACAATTTCGTGATACGTTAACCTTGTTAATTTCCTTATTAGTCGTATTTTGTCTTATGACA
131 CACGACAATTTCGTGGTA-GCTAACATTGTTAATTTCCTTATTAGTGGTATTTTGTCTTATGAAA
* *
1149892 TGAACAACCAAGGAAAGATGAAATTCAGGCATGATGCAAGA-TTTATTTTTGGGATGAGCCATAC
195 TGAACAACCAAGGAAAGAGGAAATTCAGGCATGACGCAAGATTTTATTTTTGGGATGAGCCATAC
* * * *
1149956 TTGTTCAAGCAATATACCCACTAGAATAT-AGAAGGTGTGTCCCCGAGGAGGAGAAAAAAAGACA
260 TTGTTCAAGCAATGTGCCCACCAGAATATCCGAAGGTGTGTCCCCGAGGAGGAG-AAAAAAGACA
* * *
1150020 TCTTACACCATTGCCATTCGACACCATGTGGAGGTCACTTTGGAGGACCAATGACTGCTGCAAAT
324 TCTTACACCATTGACATTCGACACCATGTGGAGGTCACTTTGGAGGAGCAAGGACTGCTGCAAAT
*
1150085 GTCTTTCAGTTAGGTTTCTATTGGCCCACTTTATTTAAGGATGCTCATGAATTTTACAAGGCGTG
389 GTCTTTCAGTTAGGTTTCTATTGGCCCACTCTATTTAAGGATGCTCATGAATTTTACAAGGCGTG
1150150 TAATAGATGCCAACGCACGGGAAATATCTCTAGACGACATGAAATGTCATTGCAAAATATCTTGG
454 TAATAGATGCCAACGCACGGGAAATATCTCTAGACGACATGAAATGTCATTGCAAAATATCTTGG
* * *
1150215 AGATAGAACTTTTTTATGAGTAGGGAATATACTTTATGGGACCCTTCCCATCCTCGTTTGGTGGC
519 AGATAGAAATTTTTTATGAGTGGGGCATATACTTTATGGGACCCTTCCCATCCTCGTTTGGTGGC
* * *
1150280 TTATATATTTTTCTCGCTTTGGACTACATGTCTAAGTGGGTTGAAGCAATTGGGATACCAAAGAA
584 TTATATATTTTTCTCGCTTTGGAATACATGTCTAAGTGGGTTGAAGCAATTGGGATGCC-AAGGA
1150345 ACGATTCAAAAACTATTCCTAAGTTTCTGCATAAGTACATCTTCACGAGATTTGGTGCACCTAGA
648 ACGATTCAAAAACTATTCCTAAGTTTCTGCATAAGTACATCTTCACGAGATTTGGTGCACCTAGA
*
1150410 GATATCATCAAAGACGAAGGTACCCACTTCGATAAGAAGTTAATTGGAAAAGTACTACAAAGATA
713 GATATCATCAAAGACGAAGGTACCCACTTCGATAAGAAATTAATTGGAAAAGTACTACAAAGATA
*
1150475 TGGGGTGGGACACAAAATTGCAATGAAAAATTA-TCCGCAGACCAATGGGCAAGCTGAAGTGTCA
778 TGGGGTGGGACACAAAATTGCCATGAAAAATTACT-CGCAGACCAATGGGCAAGCTGAAGTGTCA
* *
1150539 AACCGCAAGATTAAGCAAATCCTTGAGAATATGGTGAACCCTAGACGAAAGGACTGGTCACCAAC
842 AACCGCAAGATTAAGCAAATCCTTGAGAATATGGTGAACCCTAGACGAAAGGACTGGTCGCCAAA
* *
1150604 GCTTGATGAAGTATTATGTTCTTACAACACATTTTACATATTTC
907 GCTTGATGAAGAATTATGGTCTTACAACACATTTTACATATTTC
* *
1150648 TAGAGGTTGTATATAAGAAAGGTAATGAGAATCAAGTTACTGACCATATTTCTAGGCTAGA-AAT
1 TAGAGGTTGTAGATAAGAAAGGTAATGAGAATCAAGTTACTGACCATATTTCTAGGCTAGAGAAC
1150712 AATT---C-AGCCATGTCAACTTAGATATTAAAGAGAAATTCCCTAATGAGAAAATTTTACATGC
66 AATTCAGCAAGCCATGTCAACTTAGATATTAAAGAGAAATTCCCTAATGAGAAAATTTTACATGC
1150773 CACGACAATTTCGTGGTATGCTAACATTGTTAATTTCCTTATTAGTGGTATTTTGTCTTATGAAA
131 CACGACAATTTCGTGGTA-GCTAACATTGTTAATTTCCTTATTAGTGGTATTTTGTCTTATGAAA
1150838 TGAACAACCAAGGAAAGAGGAAATTCAGGCATGACGCAAGATTTTATTTTTGGGATGAGCCATAC
195 TGAACAACCAAGGAAAGAGGAAATTCAGGCATGACGCAAGATTTTATTTTTGGGATGAGCCATAC
1150903 TTGTTCAAGCAATGTGCCCACCAGAATATCCGAAGGTGTGTCCCCGAGGAGGAGAAAAAAGACAT
260 TTGTTCAAGCAATGTGCCCACCAGAATATCCGAAGGTGTGTCCCCGAGGAGGAGAAAAAAGACAT
1150968 CTTACACCATTGACATTCGACACCATGTGGAGGTCACTTTGGAGGAGCAAGGACTGCTGCAAATG
325 CTTACACCATTGACATTCGACACCATGTGGAGGTCACTTTGGAGGAGCAAGGACTGCTGCAAATG
1151033 TCTTTCAGTTAGGTTTCTATTGGCCCACTCTATTTAA-GATGCTCATGAATTTTACAAGGCGTGT
390 TCTTTCAGTTAGGTTTCTATTGGCCCACTCTATTTAAGGATGCTCATGAATTTTACAAGGCGTGT
1151097 AATAGATGCCAACGCACGGGAAATATCTCTAGACGACATGAAATGTCATTGCAAAATATCTTGGA
455 AATAGATGCCAACGCACGGGAAATATCTCTAGACGACATGAAATGTCATTGCAAAATATCTTGGA
1151162 GATAGAAATTTTTTATGAGTGGGGCATATACTTTATGGGACCCTTCCCATCCTCGTTTGGTGGCT
520 GATAGAAATTTTTTATGAGTGGGGCATATACTTTATGGGACCCTTCCCATCCTCGTTTGGTGGCT
*
1151227 TATATATTTTTCTCGCTTTGGAATACATGTCTAAGTGGGTTAAAGCAATTGGGATGCCAAGGAAC
585 TATATATTTTTCTCGCTTTGGAATACATGTCTAAGTGGGTTGAAGCAATTGGGATGCCAAGGAAC
*
1151292 GATTCAAAAACTATTCCTAAGTTTCTGCATAAGTACATCTTCATGAGATTTGGTGCACCTAGAGA
650 GATTCAAAAACTATTCCTAAGTTTCTGCATAAGTACATCTTCACGAGATTTGGTGCACCTAGAGA
*
1151357 TATCATCAAAGACGAAGGTACCCACTTCGATAAGAATTTAATTGGAAAAGTACTACAAAGATATG
715 TATCATCAAAGACGAAGGTACCCACTTCGATAAGAAATTAATTGGAAAAGTACTACAAAGATATG
*
1151422 GGGTGGGACACAAAATTTCCATGAAAAATTACTCGCAGACCAATGGGCAAGCTGAAGTGTCAAAC
780 GGGTGGGACACAAAATTGCCATGAAAAATTACTCGCAGACCAATGGGCAAGCTGAAGTGTCAAAC
1151487 CGCAAGATTAAGCAAATCCTTGAGAATATGGTGAACCCTAGACGAAAGGACTGGTCGCCAAAGCT
845 CGCAAGATTAAGCAAATCCTTGAGAATATGGTGAACCCTAGACGAAAGGACTGGTCGCCAAAGCT
* *
1151552 TGATGAAGCATTATGGTCTTATAACACATTTTACATATTTC
910 TGATGAAGAATTATGGTCTTACAACACATTTTACATATTTC
* *
1151593 TAGAGGTTGTATATAAGAAAGGTAATGAGAATCAAGTTACTGACCATATTTCTAGGCTAGAGAAT
1 TAGAGGTTGTAGATAAGAAAGGTAATGAGAATCAAGTTACTGACCATATTTCTAGGCTAGAGAAC
1151658 AATTCAGCAAGCCATGTCAACTTAGATATTAAAGAGAAATTCCCTAATGAGAAAATTTTACATGC
66 AATTCAGCAAGCCATGTCAACTTAGATATTAAAGAGAAATTCCCTAATGAGAAAATTTTACATGC
*
1151723 CACGACAATTT-GTGGTA-CTAACATTGTTAATTTCCTTATTAGTGGTATTTTATCTTATGAAAT
131 CACGACAATTTCGTGGTAGCTAACATTGTTAATTTCCTTATTAGTGGTATTTTGTCTTATGAAAT
*
1151786 AAACAACCAAGGAAAGAGGAAATTCAGGCATGACGCAAGA-TTTATTTTTGGGATGAGCCATACT
196 GAACAACCAAGGAAAGAGGAAATTCAGGCATGACGCAAGATTTTATTTTTGGGATGAGCCATACT
*
1151850 TGTTCAAGCAATTTGCCCACCAGAATATCCGAA-GTGTGTCCCCGAGGAGGAGAAAAAAGACATC
261 TGTTCAAGCAATGTGCCCACCAGAATATCCGAAGGTGTGTCCCCGAGGAGGAGAAAAAAGACATC
*
1151914 TTACACCATTGACATTCGACACCATGTGGAGGTCACTTTGGAGGAGCAAGGACTGCTGTAAATGT
326 TTACACCATTGACATTCGACACCATGTGGAGGTCACTTTGGAGGAGCAAGGACTGCTGCAAATGT
* *
1151979 CTTTCAGTTAGGTTTCTATTGGCCCA--CTATATAAGGATGCTCATGAATTTTACAAGGCATGTA
391 CTTTCAGTTAGGTTTCTATTGGCCCACTCTATTTAAGGATGCTCATGAATTTTACAAGGCGTGTA
* *
1152042 ATAGATGCCAACGCACGAG-AATATCTCTAGACGACATAAAAT-TCATTGCAAAATATCTTGGAG
456 ATAGATGCCAACGCACGGGAAATATCTCTAGACGACATGAAATGTCATTGCAAAATATCTTGGAG
* *
1152105 ATAGAACA-TTTTTATGTGTGAGGCATATACTTTATGGGACCCTTCCCATCCTCGTTTGGTGGCT
521 ATAGAA-ATTTTTTATGAGTGGGGCATATACTTTATGGGACCCTTCCCATCCTCGTTTGGTGGCT
1152169 TATATATTTTTCTCGCTTTGGAATACATGTCTAAGTGGGTTGAAGCAATTGGGATGCCAAGGAAC
585 TATATATTTTTCTCGCTTTGGAATACATGTCTAAGTGGGTTGAAGCAATTGGGATGCCAAGGAAC
* * * * *
1152234 GATTCAAAGACTATTCTTAAGTTTATGTATAAGTACATCTTCACGAGATTTGGCGCACCTAGAGA
650 GATTCAAAAACTATTCCTAAGTTTCTGCATAAGTACATCTTCACGAGATTTGGTGCACCTAGAGA
* * *
1152299 TATCATCAGAGACGAAGGTACCCACTTCGATAAGAAATTAATTGGCAAAGCACTGA-AAAGATAT
715 TATCATCAAAGACGAAGGTACCCACTTCGATAAGAAATTAATTGGAAAAGTACT-ACAAAGATAT
** ** * * * * ** *
1152363 GCAGTGCAACACAAAATTGCCACGACATATTACCCATAGACCAATTGGCAAGCTGAAGTGTCAAA
779 GGGGTGGGACACAAAATTGCCATGAAAAATTACTCGCAGACCAATGGGCAAGCTGAAGTGTCAAA
* * *
1152428 CCACAAGATTAAGCAAATCCTTGAGAATATGGTGAACCCTAGACGAAAAGACTGGTCGCCGAAGC
844 CCGCAAGATTAAGCAAATCCTTGAGAATATGGTGAACCCTAGACGAAAGGACTGGTCGCCAAAGC
* *
1152493 TTGATGAAGAACTATGAG-CTTACAGCACATTTTACATATTTC
909 TTGATGAAGAATTATG-GTCTTACAACACATTTTACATATTTC
* * *
1152535 TAGAGGTTGTAGATAGGAAAGATAATGAGAATCAAGTTACTAACCATATTTCTAGGCTAGAGAAC
1 TAGAGGTTGTAGATAAGAAAGGTAATGAGAATCAAGTTACTGACCATATTTCTAGGCTAGAGAAC
* * * *
1152600 AATTCAGCAAGCCATGTCAAC-TAGATATTAAAGAGAAATTTCTTGATGAGCAAATTTTACATGC
66 AATTCAGCAAGCCATGTCAACTTAGATATTAAAGAGAAATTCCCTAATGAGAAAATTTTACATGC
* **
1152664 CATGACAATTTCGTGGTACGCTAACATTGTTAATTTCCTTATTAGTGGTATTTTGTCTTATGACG
131 CACGACAATTTCGTGGTA-GCTAACATTGTTAATTTCCTTATTAGTGGTATTTTGTCTTATGAAA
* * *
1152729 TGAACAACCAAGGAAAGAGAAAATTTAGGCATGATGCAAGATTTTATTTTTGGGATGAGCCATAC
195 TGAACAACCAAGGAAAGAGGAAATTCAGGCATGACGCAAGATTTTATTTTTGGGATGAGCCATAC
*
1152794 TTGTTCAAGCAATGTGCCCACCAGAATATCCGAAGGTGTGT-CCC---GAGGAGAAAAAATACAT
260 TTGTTCAAGCAATGTGCCCACCAGAATATCCGAAGGTGTGTCCCCGAGGAGGAGAAAAAAGACAT
* * *
1152855 CTTACACCATTGCCATTCGACACCATGTGGAGGTCACTTTGGAGGAGCAAGGATTGCTGCAAATA
325 CTTACACCATTGACATTCGACACCATGTGGAGGTCACTTTGGAGGAGCAAGGACTGCTGCAAATG
* ** *
1152920 TCTTTTAGTTAGGTTTCTATTATCCCACTCTATTTAAGGATGCTCATGAATTTTTCAAGGCGTGT
390 TCTTTCAGTTAGGTTTCTATTGGCCCACTCTATTTAAGGATGCTCATGAATTTTACAAGGCGTGT
1152985 TTTTAGGGCA
Statistics
Matches: 2208, Mismatches: 110, Indels: 45
0.93 0.05 0.02
Matches are distributed among these distances:
941 49 0.02
942 601 0.27
943 32 0.01
944 157 0.07
945 537 0.24
946 429 0.19
947 243 0.11
948 23 0.01
949 7 0.00
950 73 0.03
951 57 0.03
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (950 bp):
TAGAGGTTGTAGATAAGAAAGGTAATGAGAATCAAGTTACTGACCATATTTCTAGGCTAGAGAAC
AATTCAGCAAGCCATGTCAACTTAGATATTAAAGAGAAATTCCCTAATGAGAAAATTTTACATGC
CACGACAATTTCGTGGTAGCTAACATTGTTAATTTCCTTATTAGTGGTATTTTGTCTTATGAAAT
GAACAACCAAGGAAAGAGGAAATTCAGGCATGACGCAAGATTTTATTTTTGGGATGAGCCATACT
TGTTCAAGCAATGTGCCCACCAGAATATCCGAAGGTGTGTCCCCGAGGAGGAGAAAAAAGACATC
TTACACCATTGACATTCGACACCATGTGGAGGTCACTTTGGAGGAGCAAGGACTGCTGCAAATGT
CTTTCAGTTAGGTTTCTATTGGCCCACTCTATTTAAGGATGCTCATGAATTTTACAAGGCGTGTA
ATAGATGCCAACGCACGGGAAATATCTCTAGACGACATGAAATGTCATTGCAAAATATCTTGGAG
ATAGAAATTTTTTATGAGTGGGGCATATACTTTATGGGACCCTTCCCATCCTCGTTTGGTGGCTT
ATATATTTTTCTCGCTTTGGAATACATGTCTAAGTGGGTTGAAGCAATTGGGATGCCAAGGAACG
ATTCAAAAACTATTCCTAAGTTTCTGCATAAGTACATCTTCACGAGATTTGGTGCACCTAGAGAT
ATCATCAAAGACGAAGGTACCCACTTCGATAAGAAATTAATTGGAAAAGTACTACAAAGATATGG
GGTGGGACACAAAATTGCCATGAAAAATTACTCGCAGACCAATGGGCAAGCTGAAGTGTCAAACC
GCAAGATTAAGCAAATCCTTGAGAATATGGTGAACCCTAGACGAAAGGACTGGTCGCCAAAGCTT
GATGAAGAATTATGGTCTTACAACACATTTTACATATTTC
Found at i:1156163 original size:23 final size:23
Alignment explanation
Indices: 1156137--1156203 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 23
1156127 CGGTCCTACA
1156137 GGACAAATCTACGTGGTCCTTTG
1 GGACAAATCTACGTGGTCCTTTG
** *
1156160 GGACATTTCTACGCGGTCCTTTG
1 GGACAAATCTACGTGGTCCTTTG
* *
1156183 GGA-TAATACTATGTGGTCCTT
1 GGACAAAT-CTACGTGGTCCTT
1156204 CGAGATAATT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
22 1 0.03
23 34 0.97
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.34
Consensus pattern (23 bp):
GGACAAATCTACGTGGTCCTTTG
Found at i:1156494 original size:28 final size:28
Alignment explanation
Indices: 1156462--1156518 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
1156452 ATAAGACTAA
1156462 ATGTTTTTAATATTTTGTGAAATGCATT
1 ATGTTTTTAATATTTTGTGAAATGCATT
*
1156490 ATGTTTTTAATGTTTTGTGAAATGCATT
1 ATGTTTTTAATATTTTGTGAAATGCATT
1156518 A
1 A
1156519 CGTGTGAGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.04, G:0.16, T:0.53
Consensus pattern (28 bp):
ATGTTTTTAATATTTTGTGAAATGCATT
Found at i:1163075 original size:23 final size:23
Alignment explanation
Indices: 1163049--1163140 Score: 94
Period size: 23 Copynumber: 4.0 Consensus size: 23
1163039 CGATTCTAAG
* *
1163049 GGACAATTCTACATGGTCCTACA
1 GGACAATTCTACGTGGTCCTTCA
* * * *
1163072 GGACATTTCTATGCGGTCCTTCG
1 GGACAATTCTACGTGGTCCTTCA
* *
1163095 GGACAATACTATGTGGTCCTTCA
1 GGACAATTCTACGTGGTCCTTCA
*
1163118 GGACAATTTCTACGTGGTACTTC
1 GGACAA-TTCTACGTGGTCCTTC
1163141 GGTGCATATT
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
23 42 0.76
24 13 0.24
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.32
Consensus pattern (23 bp):
GGACAATTCTACGTGGTCCTTCA
Found at i:1164309 original size:31 final size:31
Alignment explanation
Indices: 1164243--1164333 Score: 132
Period size: 31 Copynumber: 3.0 Consensus size: 31
1164233 CCCGAAGGAT
*
1164243 CTATCCATATGTTCC-AAAGAACATAGGT-AA
1 CTATCCATATGTCCCGAAAG-ACATAGGTAAA
*
1164273 CTATCCATATGTCCCGAATGACATAGGTAAA
1 CTATCCATATGTCCCGAAAGACATAGGTAAA
*
1164304 CTATCCATATGTCTCGAAAGACATAGGTAA
1 CTATCCATATGTCCCGAAAGACATAGGTAA
1164334 CACTCGACTC
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
30 22 0.40
31 33 0.60
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.26
Consensus pattern (31 bp):
CTATCCATATGTCCCGAAAGACATAGGTAAA
Found at i:1170984 original size:19 final size:19
Alignment explanation
Indices: 1170960--1171005 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
1170950 TGTCATCTTC
*
1170960 TCTTCTTCTTCAACCCGTT
1 TCTTCTTCTTCAACCCATT
1170979 TCTTCTTCTTCAACCCATT
1 TCTTCTTCTTCAACCCATT
1170998 TCTTCTTC
1 TCTTCTTC
1171006 CTCTCTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.11, C:0.37, G:0.02, T:0.50
Consensus pattern (19 bp):
TCTTCTTCTTCAACCCATT
Found at i:1171950 original size:20 final size:21
Alignment explanation
Indices: 1171906--1171959 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
1171896 CAGTCAGTGG
* *
1171906 GTATCGATACCAAGTGGCTCA
1 GTATCGATACTAAGTGGCCCA
*
1171927 GTATCGATACTAA-TGTCCCA
1 GTATCGATACTAAGTGGCCCA
1171947 GTATCGATACTAA
1 GTATCGATACTAA
1171960 CGGACAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 18 0.60
21 12 0.40
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (21 bp):
GTATCGATACTAAGTGGCCCA
Found at i:1180308 original size:106 final size:109
Alignment explanation
Indices: 1180171--1180426 Score: 322
Period size: 111 Copynumber: 2.3 Consensus size: 109
1180161 GTATTGCTCC
* * * ** * * *
1180171 GAGTCCAATATCCTCCGCCGTGAAGTTGAAATTGGT-T-TTGGAACTG-GGAAATTGTTTGTTGA
1 GAGTCTAATATCCTTCGCTGTGAAGTTGAAATTACTCTAATGAAACTGAAGAAATTGTTTGTTGA
1180233 CAGTCAGCCGCCCCTTCGCTATGAAGTTGAGCTTGTGATGTCTT
66 CAGTCAGCCGCCCCTTCGCTATGAAGTTGAGCTTGTGATGTCTT
*
1180277 GAGTCTAATATCCTTCGCTGTGAAGTTGAAATATACTCTGAATGAAACTGAAGAAGTTGTTTGTT
1 GAGTCTAATATCCTTCGCTGTGAAGTTGAAAT-TACTCT-AATGAAACTGAAGAAATTGTTTGTT
* * * *
1180342 GACAGTTAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTT
64 GACAGTCAGCCGCCCCTTCGCTATGAAGTTGAGCTTGTGATGTCTT
*
1180388 GAGT-TCAATATCCTTCGCTGTGAAGTTAAAATTAGCTCT
1 GAGTCT-AATATCCTTCGCTGTGAAGTTGAAATTA-CTCT
1180427 GAAACTGGGA
Statistics
Matches: 129, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
106 29 0.22
107 2 0.02
108 1 0.01
110 10 0.08
111 87 0.67
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (109 bp):
GAGTCTAATATCCTTCGCTGTGAAGTTGAAATTACTCTAATGAAACTGAAGAAATTGTTTGTTGA
CAGTCAGCCGCCCCTTCGCTATGAAGTTGAGCTTGTGATGTCTT
Found at i:1180362 original size:111 final size:111
Alignment explanation
Indices: 1180222--1180429 Score: 339
Period size: 111 Copynumber: 1.9 Consensus size: 111
1180212 AACTGGGAAA
1180222 TTGTTTGTTGACAGTCAGCCGCCCCTTCGCTATGAAGTTGAGCTTGTGATGTCTTGAG-TCTAAT
1 TTGTTTGTTGACAGTCAGCCGCCCCTTCGCTATGAAGTTGAGCTTGTGATGTCTTGAGTTC-AAT
*
1180286 ATCCTTCGCTGTGAAGTTGAAATATA-CTCTGAATGAAACTGAAGAAG
65 ATCCTTCGCTGTGAAGTTAAAAT-TAGCTCTGAATGAAACTGAAGAAG
* * * *
1180333 TTGTTTGTTGACAGTTAGTCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGAGTTCAATA
1 TTGTTTGTTGACAGTCAGCCGCCCCTTCGCTATGAAGTTGAGCTTGTGATGTCTTGAGTTCAATA
1180398 TCCTTCGCTGTGAAGTTAAAATTAGCTCTGAA
66 TCCTTCGCTGTGAAGTTAAAATTAGCTCTGAA
1180430 ACTGGGAAGC
Statistics
Matches: 90, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
110 2 0.02
111 86 0.96
112 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.36
Consensus pattern (111 bp):
TTGTTTGTTGACAGTCAGCCGCCCCTTCGCTATGAAGTTGAGCTTGTGATGTCTTGAGTTCAATA
TCCTTCGCTGTGAAGTTAAAATTAGCTCTGAATGAAACTGAAGAAG
Found at i:1181557 original size:14 final size:13
Alignment explanation
Indices: 1181533--1181585 Score: 61
Period size: 14 Copynumber: 3.9 Consensus size: 13
1181523 ACCCTAAACG
*
1181533 TTTTTTCTCTTTT
1 TTTTTTTTCTTTT
1181546 TTATTTTTTCTTTT
1 TT-TTTTTTCTTTT
*
1181560 TTGTTTTTTCCTTT
1 TT-TTTTTTCTTTT
*
1181574 TTCTTTTTCTTT
1 TTTTTTTTCTTT
1181586 CTTCGACTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
13 10 0.29
14 24 0.71
ACGTcount: A:0.02, C:0.13, G:0.02, T:0.83
Consensus pattern (13 bp):
TTTTTTTTCTTTT
Found at i:1188594 original size:25 final size:27
Alignment explanation
Indices: 1188554--1188604 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 27
1188544 ACGAATGTAA
1188554 AAACATGGAAAATATAAAATAAAAAAC
1 AAACATGGAAAATATAAAATAAAAAAC
*
1188581 AAACAT-G-AAATATAAAATGAAAAA
1 AAACATGGAAAATATAAAATAAAAAA
1188605 TATGCAATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.70
26 1 0.04
27 6 0.26
ACGTcount: A:0.71, C:0.06, G:0.08, T:0.16
Consensus pattern (27 bp):
AAACATGGAAAATATAAAATAAAAAAC
Found at i:1191781 original size:23 final size:24
Alignment explanation
Indices: 1191736--1191782 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
1191726 TAATCGATGT
*
1191736 AAGATAGAAATAATAAAGTGCAAA
1 AAGATAGAAATAATAAAGAGCAAA
1191760 AAGATA-AAATAAGTAAA-AGCAAA
1 AAGATAGAAATAA-TAAAGAGCAAA
1191783 GTAAACAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.66, C:0.04, G:0.15, T:0.15
Consensus pattern (24 bp):
AAGATAGAAATAATAAAGAGCAAA
Found at i:1191890 original size:17 final size:17
Alignment explanation
Indices: 1191850--1191891 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
1191840 AACATAAAGC
*
1191850 AAAAAAAATGGAATTAA
1 AAAAAAAATGGAATGAA
*
1191867 ATAAAAACAT-GAATGAA
1 A-AAAAAAATGGAATGAA
1191884 AAAAAAAA
1 AAAAAAAA
1191892 GAAAATAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
16 6 0.29
17 8 0.38
18 7 0.33
ACGTcount: A:0.74, C:0.02, G:0.10, T:0.14
Consensus pattern (17 bp):
AAAAAAAATGGAATGAA
Found at i:1191949 original size:23 final size:22
Alignment explanation
Indices: 1191878--1191949 Score: 74
Period size: 23 Copynumber: 3.1 Consensus size: 22
1191868 TAAAAACATG
* *
1191878 AATGAAAAAAAAAAGAAAATAAA
1 AATGATAAAAAAAA-TAAATAAA
*
1191901 AAGGATAAAGCAAAAAT-AATAAA
1 AATGATAAA--AAAAATAAATAAA
1191924 AATGATAAAAAAAATAAATAATA
1 AATGATAAAAAAAATAAATAA-A
1191947 AAT
1 AAT
1191950 AAATATATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
21 6 0.15
22 5 0.12
23 25 0.61
25 5 0.12
ACGTcount: A:0.75, C:0.01, G:0.08, T:0.15
Consensus pattern (22 bp):
AATGATAAAAAAAATAAATAAA
Found at i:1191959 original size:2 final size:2
Alignment explanation
Indices: 1191952--1191980 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1191942 TAATAAATAA
1191952 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1191981 GGAAGAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1195473 original size:23 final size:25
Alignment explanation
Indices: 1195426--1195477 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 25
1195416 ACTATATTAT
*
1195426 AAATTTAAGAAATGTGAAAATAAAA
1 AAATTTAAGAAATATGAAAATAAAA
*
1195451 AAATTT-AGAAATAT-ACAATAAAA
1 AAATTTAAGAAATATGAAAATAAAA
1195474 AAAT
1 AAAT
1195478 ACTTCAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 12 0.48
24 7 0.28
25 6 0.24
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (25 bp):
AAATTTAAGAAATATGAAAATAAAA
Found at i:1197655 original size:2 final size:2
Alignment explanation
Indices: 1197648--1197698 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
1197638 ATAAAAATGA
1197648 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1197690 AT AT AT AT A
1 AT AT AT AT A
1197699 AATTTGAATT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1201973 original size:20 final size:20
Alignment explanation
Indices: 1201935--1201973 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1201925 ACGAAGAACA
* *
1201935 AGTATTGATACTATCCCTAT
1 AGTATCGATACTATACCTAT
*
1201955 AGTATCGATACTCTACCTA
1 AGTATCGATACTATACCTA
1201974 CATAAGTCAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (20 bp):
AGTATCGATACTATACCTAT
Found at i:1204808 original size:15 final size:15
Alignment explanation
Indices: 1204788--1204823 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
1204778 ACATGCTAAT
1204788 TCATATATGATAAAA
1 TCATATATGATAAAA
1204803 TCATATATGATAAAA
1 TCATATATGATAAAA
1204818 TCATAT
1 TCATAT
1204824 TTTAATGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.36
Consensus pattern (15 bp):
TCATATATGATAAAA
Found at i:1216265 original size:184 final size:185
Alignment explanation
Indices: 1215956--1216324 Score: 731
Period size: 184 Copynumber: 2.0 Consensus size: 185
1215946 ACGTTTCAGA
1215956 CCCTCCTTGATATTGAGTCCTCCAAGCCCTAGCTAGCCACAACATCTCGTTCGGTTTCCAAATGG
1 CCCTCCTTGATATTGAGTCCTCCAAGCCCTAGCTAGCCACAACATCTCGTTCGGTTTCCAAATGG
1216021 GGCTCACATATTTCCCTTTCCTGAATTGCTGATGAGATTGCTCTTCTCTTCCACGTTTGCTGGCT
66 GGCTCACATATTTCCCTTTCCTGAATTGCTGATGAGATTGCTCTTCTCTTCCACGTTTGCTGGCT
1216086 TCTCGA-GGGAGTGGGGTGGAGACGAGGCTGCGTCCGAGGATGAAGCCTGTGTTT
131 TCTCGAGGGGAGTGGGGTGGAGACGAGGCTGCGTCCGAGGATGAAGCCTGTGTTT
1216140 CCCTCCTTGATATTGAGTCCTCCAAGCCCTAGCTAGCCACAACATCTCGTTCGGTTTCCAAATGG
1 CCCTCCTTGATATTGAGTCCTCCAAGCCCTAGCTAGCCACAACATCTCGTTCGGTTTCCAAATGG
1216205 GGCTCACATATTTCCCTTTCCTGAATTGCTGATGAGATTGCTCTTCTCTTCCACGTTTGCTGGCT
66 GGCTCACATATTTCCCTTTCCTGAATTGCTGATGAGATTGCTCTTCTCTTCCACGTTTGCTGGCT
1216270 TCTCGAGGGGAGTGGGGTGGAGACGAGGCTGCGTCCGAGGATGAAGCCTGTGTTT
131 TCTCGAGGGGAGTGGGGTGGAGACGAGGCTGCGTCCGAGGATGAAGCCTGTGTTT
1216325 GAGGGTTTAT
Statistics
Matches: 184, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
184 136 0.74
185 48 0.26
ACGTcount: A:0.17, C:0.27, G:0.26, T:0.30
Consensus pattern (185 bp):
CCCTCCTTGATATTGAGTCCTCCAAGCCCTAGCTAGCCACAACATCTCGTTCGGTTTCCAAATGG
GGCTCACATATTTCCCTTTCCTGAATTGCTGATGAGATTGCTCTTCTCTTCCACGTTTGCTGGCT
TCTCGAGGGGAGTGGGGTGGAGACGAGGCTGCGTCCGAGGATGAAGCCTGTGTTT
Found at i:1220166 original size:16 final size:16
Alignment explanation
Indices: 1220147--1220177 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1220137 TGGCGGCGTA
1220147 GGTGCATTACGGCGCT
1 GGTGCATTACGGCGCT
1220163 GGTGCATTACGGCGC
1 GGTGCATTACGGCGC
1220178 ATGAAGACGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.26, G:0.39, T:0.23
Consensus pattern (16 bp):
GGTGCATTACGGCGCT
Found at i:1222320 original size:13 final size:14
Alignment explanation
Indices: 1222296--1222329 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
1222286 GTTTGGTCAA
*
1222296 AAAAAATAAAAAAT
1 AAAAAATAAAAAAC
1222310 AAAAAAT-AAAAAC
1 AAAAAATAAAAAAC
1222323 AAAAAAT
1 AAAAAAT
1222330 TTAATGGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAAAATAAAAAAC
Found at i:1222327 original size:14 final size:13
Alignment explanation
Indices: 1222294--1222329 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
1222284 ATGTTTGGTC
1222294 AAAAAAAATAAAA
1 AAAAAAAATAAAA
1222307 AATAAAAAATAAAA
1 AA-AAAAAATAAAA
*
1222321 ACAAAAAAT
1 AAAAAAAAT
1222330 TTAATGGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.86, C:0.03, G:0.00, T:0.11
Consensus pattern (13 bp):
AAAAAAAATAAAA
Found at i:1222328 original size:7 final size:7
Alignment explanation
Indices: 1222296--1222321 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
1222286 GTTTGGTCAA
1222296 AAAAAAT
1 AAAAAAT
1222303 AAAAAAT
1 AAAAAAT
1222310 AAAAAAT
1 AAAAAAT
1222317 AAAAA
1 AAAAA
1222322 CAAAAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:1240270 original size:26 final size:28
Alignment explanation
Indices: 1240233--1240300 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 28
1240223 TTGTGTTTTC
1240233 TTTAACAATTTAA-T-TCATTTGAA-AATA
1 TTTAA-AATTTAATTCTCATTT-AATAATA
*
1240260 TTTAAAATTTAATTCTCATTTAATAATT
1 TTTAAAATTTAATTCTCATTTAATAATA
1240288 TTTAAAAATTTAA
1 TTT-AAAATTTAA
1240301 CATCTAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
26 7 0.19
27 8 0.22
28 12 0.33
29 9 0.25
ACGTcount: A:0.44, C:0.06, G:0.01, T:0.49
Consensus pattern (28 bp):
TTTAAAATTTAATTCTCATTTAATAATA
Found at i:1240542 original size:19 final size:19
Alignment explanation
Indices: 1240499--1240549 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
1240489 AAATGACCAA
* *
1240499 CAAATTCACAACACGATCT
1 CAAATTCGCAACACGAACT
*
1240518 CAAATTCGCAACGCGAACT
1 CAAATTCGCAACACGAACT
*
1240537 CCAATTTCGCAAC
1 -CAAATTCGCAAC
1240550 TCAGTTTCCA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.37, C:0.33, G:0.10, T:0.20
Consensus pattern (19 bp):
CAAATTCGCAACACGAACT
Found at i:1240647 original size:20 final size:20
Alignment explanation
Indices: 1240635--1240676 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
1240625 TCGCAACTTG
1240635 AATCTGTAATTCGCAACGCA
1 AATCTGTAATTCGCAACGCA
*
1240655 AATCTGTAATTCGCAACACA
1 AATCTGTAATTCGCAACGCA
1240675 AA
1 AA
1240677 AGTCAAATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (20 bp):
AATCTGTAATTCGCAACGCA
Found at i:1240685 original size:20 final size:20
Alignment explanation
Indices: 1240662--1240710 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
1240652 GCAAATCTGT
1240662 AATTCGCAACACAAAAGTCA
1 AATTCGCAACACAAAAGTCA
* *
1240682 AATTCGCAACATAGAAGTCA
1 AATTCGCAACACAAAAGTCA
1240702 AATTCGCAA
1 AATTCGCAA
1240711 AGCGCGTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.47, C:0.22, G:0.12, T:0.18
Consensus pattern (20 bp):
AATTCGCAACACAAAAGTCA
Found at i:1240824 original size:20 final size:20
Alignment explanation
Indices: 1240799--1240844 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
1240789 GTATAATCAC
1240799 AAATCATAACCTAAAACCCT
1 AAATCATAACCTAAAACCCT
1240819 AAATCATAACCTAAAACCCT
1 AAATCATAACCTAAAACCCT
1240839 AAATCA
1 AAATCA
1240845 CAACTCAGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.20
Consensus pattern (20 bp):
AAATCATAACCTAAAACCCT
Found at i:1240910 original size:22 final size:22
Alignment explanation
Indices: 1240885--1240931 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
1240875 CTACGGCGAC
*
1240885 ATCCGTCCCCATCTCCGACGAA
1 ATCCATCCCCATCTCCGACGAA
1240907 ATCCATCCCCATCTCCGACGAA
1 ATCCATCCCCATCTCCGACGAA
1240929 ATC
1 ATC
1240932 TGTCTATCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.45, G:0.11, T:0.19
Consensus pattern (22 bp):
ATCCATCCCCATCTCCGACGAA
Found at i:1242993 original size:21 final size:21
Alignment explanation
Indices: 1242950--1242999 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
1242940 GTTAGGGGTG
* *
1242950 TTACGTGATGAGGTCAATGCT
1 TTACGTGAGGAGGTCAATACT
**
1242971 TTACGTGAGGAGGTCGTTACT
1 TTACGTGAGGAGGTCAATACT
*
1242992 TTATGTGA
1 TTACGTGA
1243000 AGACAATGGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.12, G:0.30, T:0.36
Consensus pattern (21 bp):
TTACGTGAGGAGGTCAATACT
Found at i:1243411 original size:21 final size:21
Alignment explanation
Indices: 1243387--1243436 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
1243377 GTCATCGTTC
1243387 AAGAGGCCTATCCTATCATTT
1 AAGAGGCCTATCCTATCATTT
* *
1243408 AAGAGGCCTCTCCTATCGTTT
1 AAGAGGCCTATCCTATCATTT
*
1243429 AAAAGGCC
1 AAGAGGCC
1243437 CTTATCATCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (21 bp):
AAGAGGCCTATCCTATCATTT
Found at i:1243456 original size:21 final size:20
Alignment explanation
Indices: 1243432--1243497 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 20
1243422 ATCGTTTAAA
1243432 AGGCCCTTATCATCCTTCAAG
1 AGGCCC-TATCATCCTTCAAG
* *
1243453 AGGCCC-CTCCTACCGTTCAAG
1 AGGCCCTATCAT-CC-TTCAAG
* *
1243474 AGGCCCCTGTCATCGTTCAAG
1 AGG-CCCTATCATCCTTCAAG
1243495 AGG
1 AGG
1243498 TTCCTCCCAC
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
19 3 0.08
20 2 0.06
21 24 0.67
22 4 0.11
23 3 0.08
ACGTcount: A:0.21, C:0.35, G:0.21, T:0.23
Consensus pattern (20 bp):
AGGCCCTATCATCCTTCAAG
Found at i:1243504 original size:42 final size:42
Alignment explanation
Indices: 1243382--1243517 Score: 125
Period size: 42 Copynumber: 3.2 Consensus size: 42
1243372 CACCTGTCAT
* *
1243382 CGTTCAAGAGGCCTATCCTATCAT--TT-AAGAGGCCTCTCCTAT
1 CGTTCAAGAGGCC---CCTATCATCCTTCAAGAGGCCCCTCCTAC
* * *
1243424 CGTTTAAAAGGCCCTTATCATCCTTCAAGAGGCCCCTCCTAC
1 CGTTCAAGAGGCCCCTATCATCCTTCAAGAGGCCCCTCCTAC
* * ** *
1243466 CGTTCAAGAGGCCCCTGTCATCGTTCAAGAGGTTCCTCCCAC
1 CGTTCAAGAGGCCCCTATCATCCTTCAAGAGGCCCCTCCTAC
*
1243508 CGTTCGAGAG
1 CGTTCAAGAG
1243518 CTCGATTCAC
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
39 7 0.09
41 2 0.03
42 68 0.88
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.26
Consensus pattern (42 bp):
CGTTCAAGAGGCCCCTATCATCCTTCAAGAGGCCCCTCCTAC
Found at i:1243511 original size:21 final size:21
Alignment explanation
Indices: 1243447--1243517 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
1243437 CTTATCATCC
*
1243447 TTCAAGAGGCCCCTCCTACCG
1 TTCAAGAGGCCCCTCCCACCG
** *
1243468 TTCAAGAGGCCCCTGTCATCG
1 TTCAAGAGGCCCCTCCCACCG
**
1243489 TTCAAGAGGTTCCTCCCACCG
1 TTCAAGAGGCCCCTCCCACCG
*
1243510 TTCGAGAG
1 TTCAAGAG
1243518 CTCGATTCAC
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.20, C:0.35, G:0.23, T:0.23
Consensus pattern (21 bp):
TTCAAGAGGCCCCTCCCACCG
Found at i:1244923 original size:64 final size:64
Alignment explanation
Indices: 1244847--1244996 Score: 255
Period size: 64 Copynumber: 2.3 Consensus size: 64
1244837 GAAATTGATG
1244847 TATTTGTAAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGCTTGTTTAATT
1 TATTTGTAAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGCTTGTTTAATT
* * **
1244911 TATTTGTAAAAGTTGATTTGTTTAATTGATGTGTAAATAATTATTATTTTTTGCTTGTTTAATT
1 TATTTGTAAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGCTTGTTTAATT
*
1244975 GATTTGTAAAAGTTGATTTGTT
1 TATTTGTAAAAGTTGATTTGTT
1244997 GTTTTAAATT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 81 1.00
ACGTcount: A:0.29, C:0.01, G:0.17, T:0.53
Consensus pattern (64 bp):
TATTTGTAAAAGTTGATTTGTTTAATTGATGAGGAAATAAGAATTATTTTTTGCTTGTTTAATT
Found at i:1245117 original size:20 final size:20
Alignment explanation
Indices: 1245057--1245142 Score: 73
Period size: 20 Copynumber: 4.3 Consensus size: 20
1245047 AAGATACACT
*
1245057 TTCGCAACGCGAAAGTCAAA
1 TTCGCAACGCAAAAGTCAAA
* *** * *
1245077 TTCACGTTGCGATAGTCAAA
1 TTCGCAACGCAAAAGTCAAA
*
1245097 TTCGCAACGCAAAAGTTAAA
1 TTCGCAACGCAAAAGTCAAA
* **
1245117 TTCACAACGTGAAAGTCAAA
1 TTCGCAACGCAAAAGTCAAA
1245137 TTCGCA
1 TTCGCA
1245143 TTGCGATTTT
Statistics
Matches: 49, Mismatches: 17, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (20 bp):
TTCGCAACGCAAAAGTCAAA
Found at i:1245134 original size:40 final size:40
Alignment explanation
Indices: 1245057--1245142 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
1245047 AAGATACACT
* *** *
1245057 TTCGCAACGCGAAAGTCAAATTCACGTTGCGATAGTCAAA
1 TTCGCAACGCAAAAGTCAAATTCACAACGCGAAAGTCAAA
* *
1245097 TTCGCAACGCAAAAGTTAAATTCACAACGTGAAAGTCAAA
1 TTCGCAACGCAAAAGTCAAATTCACAACGCGAAAGTCAAA
1245137 TTCGCA
1 TTCGCA
1245143 TTGCGATTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (40 bp):
TTCGCAACGCAAAAGTCAAATTCACAACGCGAAAGTCAAA
Found at i:1245443 original size:18 final size:18
Alignment explanation
Indices: 1245420--1245455 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1245410 AAGCCGGTTG
*
1245420 TGATTGGGATTTTGATTT
1 TGATTGCGATTTTGATTT
1245438 TGATTGCGATTTTGATTT
1 TGATTGCGATTTTGATTT
1245456 CCTTTTACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.25, T:0.56
Consensus pattern (18 bp):
TGATTGCGATTTTGATTT
Found at i:1246643 original size:18 final size:18
Alignment explanation
Indices: 1246620--1246656 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1246610 CAAAATTTAT
1246620 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
1246638 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
1246656 A
1 A
1246657 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:1247063 original size:25 final size:25
Alignment explanation
Indices: 1247035--1247083 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
1247025 ATTATTTTCC
*
1247035 AAATAATGTACCCATAACAATGTTA
1 AAATAATGTACCCACAACAATGTTA
1247060 AAATAATGTACCCACAACAATGTT
1 AAATAATGTACCCACAACAATGTT
1247084 TAATTGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.27
Consensus pattern (25 bp):
AAATAATGTACCCACAACAATGTTA
Found at i:1247185 original size:20 final size:20
Alignment explanation
Indices: 1247162--1247225 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 20
1247152 CTTTCGCAAC
*
1247162 GCGAAAGTCAAATTCGCGTT
1 GCGAAAGTCAAATTCGCATT
* *
1247182 GCGATAGTCAAATTCTCATT
1 GCGAAAGTCAAATTCGCATT
*
1247202 GC-AATAGTCAAATTCGTATT
1 GCGAA-AGTCAAATTCGCATT
1247222 GCGA
1 GCGA
1247226 TTTTTGCATT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
19 1 0.03
20 34 0.94
21 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (20 bp):
GCGAAAGTCAAATTCGCATT
Found at i:1247492 original size:18 final size:18
Alignment explanation
Indices: 1247469--1247504 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1247459 AAGCCGGTTG
1247469 TGATTGAGATTTTGATTT
1 TGATTGAGATTTTGATTT
*
1247487 TGATTGCGATTTTGATTT
1 TGATTGAGATTTTGATTT
1247505 CATTTTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.03, G:0.22, T:0.56
Consensus pattern (18 bp):
TGATTGAGATTTTGATTT
Found at i:1250772 original size:20 final size:19
Alignment explanation
Indices: 1250728--1250836 Score: 80
Period size: 20 Copynumber: 5.5 Consensus size: 19
1250718 CAAAACATTT
1250728 GTGTTGCGAAATTAAAA-C
1 GTGTTGCGAAATTAAAATC
*
1250746 CTGTTGCGAAATTAAAATTC
1 GTGTTGCGAAATTAAAA-TC
1250766 GTGTTGCG-AATTCGAAAATC
1 GTGTTGCGAAATT--AAAATC
* *
1250786 GAGTTGTG-AATTCAGAAATC
1 GTGTTGCGAAATT-A-AAATC
* * *
1250806 GAGTTGCGAATTTGAAATTC
1 GTGTTGCGAAATT-AAAATC
1250826 AGTGTTGCGAA
1 -GTGTTGCGAA
1250837 TTCGGAAATC
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
18 16 0.22
19 5 0.07
20 36 0.49
21 17 0.23
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (19 bp):
GTGTTGCGAAATTAAAATC
Found at i:1250840 original size:61 final size:60
Alignment explanation
Indices: 1250748--1250881 Score: 171
Period size: 61 Copynumber: 2.2 Consensus size: 60
1250738 ATTAAAACCT
* * **
1250748 GTTGCGAAATTAAAATTCGTGTTGCGAATTCGAAAATCG-AGTTGTGAATTCAGAAATCGA
1 GTTGCGAATTTGAAATTCGTGTTGCGAATTCGAAAATCGCA-TTGCAAATTCAGAAATCGA
* ** *
1250808 GTTGCGAATTTGAAATTCAGTGTTGCGAATTCGGAAATCGCATTGCAAATTTGGAAATCGC
1 GTTGCGAATTTGAAATTC-GTGTTGCGAATTCGAAAATCGCATTGCAAATTCAGAAATCGA
1250869 GTTGCGAATTTGA
1 GTTGCGAATTTGA
1250882 CTCTTGTGTT
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
60 16 0.25
61 47 0.73
62 1 0.02
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (60 bp):
GTTGCGAATTTGAAATTCGTGTTGCGAATTCGAAAATCGCATTGCAAATTCAGAAATCGA
Found at i:1250845 original size:41 final size:40
Alignment explanation
Indices: 1250768--1250878 Score: 118
Period size: 41 Copynumber: 2.7 Consensus size: 40
1250758 TAAAATTCGT
* *
1250768 GTTGCGAATTCGAAAATCGAGTTGTGAATTCAGAAATCG-A
1 GTTGCGAATTTG-AAATCGAGTTGCGAATTCAGAAATCGCA
* *
1250808 GTTGCGAATTTGAAATTCAGTGTTGCGAATTCGGAAATCGCA
1 GTTGCGAATTTGAAA-TC-GAGTTGCGAATTCAGAAATCGCA
* *
1250850 -TTGCAAATTTGGAAATCGCGTTGCGAATT
1 GTTGCGAATTT-GAAATCGAGTTGCGAATT
1250879 TGACTCTTGT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
39 3 0.05
40 24 0.39
41 29 0.48
42 5 0.08
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (40 bp):
GTTGCGAATTTGAAATCGAGTTGCGAATTCAGAAATCGCA
Found at i:1250880 original size:20 final size:20
Alignment explanation
Indices: 1250768--1250878 Score: 109
Period size: 20 Copynumber: 5.5 Consensus size: 20
1250758 TAAAATTCGT
*
1250768 GTTGCGAATTCGAAAATCGA
1 GTTGCGAATTCGGAAATCGA
* *
1250788 GTTGTGAATTCAGAAATCGA
1 GTTGCGAATTCGGAAATCGA
* *
1250808 GTTGCGAATT-TGAAATTCAGT
1 GTTGCGAATTCGGAAA-TC-GA
1250829 GTTGCGAATTCGGAAATCGCA
1 GTTGCGAATTCGGAAATCG-A
* * *
1250850 -TTGCAAATTTGGAAATCGC
1 GTTGCGAATTCGGAAATCGA
1250869 GTTGCGAATT
1 GTTGCGAATT
1250879 TGACTCTTGT
Statistics
Matches: 74, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
19 4 0.05
20 53 0.72
21 13 0.18
22 4 0.05
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (20 bp):
GTTGCGAATTCGGAAATCGA
Found at i:1250910 original size:20 final size:20
Alignment explanation
Indices: 1250887--1250935 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
1250877 TTTGACTCTT
1250887 GTGTTGCGATTTACAGATTC
1 GTGTTGCGATTTACAGATTC
*
1250907 GTGTTGCGATTTACATATTC
1 GTGTTGCGATTTACAGATTC
*
1250927 GCGTTGCGA
1 GTGTTGCGA
1250936 ATTTGGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.18, C:0.16, G:0.27, T:0.39
Consensus pattern (20 bp):
GTGTTGCGATTTACAGATTC
Found at i:1250949 original size:21 final size:21
Alignment explanation
Indices: 1250925--1251063 Score: 68
Period size: 21 Copynumber: 6.8 Consensus size: 21
1250915 ATTTACATAT
*
1250925 TCGCGTTGCGAATTTGGAAAA
1 TCGCATTGCGAATTTGGAAAA
** *
1250946 TCGCAACGCGAATTTAGAAAA
1 TCGCATTGCGAATTTGGAAAA
* ** * *
1250967 TCACAACGCGAATTCGTAAAA
1 TCGCATTGCGAATTTGGAAAA
* ** * *
1250988 TCGCAATGCG-ATTTACATAT
1 TCGCATTGCGAATTTGGAAAA
* *
1251008 TCGCGTTGCGAATTTGGAAAC
1 TCGCATTGCGAATTTGGAAAA
* * **
1251029 T-GAATTGCGAAATTGG-AGT
1 TCGCATTGCGAATTTGGAAAA
*
1251048 TCGCGTTGCGAATTTG
1 TCGCATTGCGAATTTG
1251064 TTGGTCATTT
Statistics
Matches: 87, Mismatches: 29, Indels: 5
0.72 0.24 0.04
Matches are distributed among these distances:
19 2 0.02
20 36 0.41
21 49 0.56
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (21 bp):
TCGCATTGCGAATTTGGAAAA
Found at i:1251599 original size:4 final size:4
Alignment explanation
Indices: 1251590--1251635 Score: 56
Period size: 4 Copynumber: 10.8 Consensus size: 4
1251580 TTATTAAATT
*
1251590 TTTA TTTA TTTA TTTA TTTA TTTA TTTTAA TTTAA TATA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTT-A TTT-A TTTA TTTA TTT
1251636 TGTACCAATC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
4 27 0.71
5 10 0.26
6 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:1251984 original size:13 final size:13
Alignment explanation
Indices: 1251935--1251990 Score: 52
Period size: 13 Copynumber: 4.8 Consensus size: 13
1251925 TTTATTTTTC
1251935 AAATTCATATCTT
1 AAATTCATATCTT
*
1251948 AAACTCATAT-TT
1 AAATTCATATCTT
*
1251960 ---TT-AT-TTTT
1 AAATTCATATCTT
1251968 AAATTCATATCTT
1 AAATTCATATCTT
1251981 AAATTCATAT
1 AAATTCATAT
1251991 ATTTTATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 12
0.69 0.06 0.24
Matches are distributed among these distances:
7 1 0.03
8 4 0.12
9 1 0.03
11 2 0.06
12 4 0.12
13 22 0.65
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (13 bp):
AAATTCATATCTT
Found at i:1252018 original size:34 final size:34
Alignment explanation
Indices: 1251912--1252006 Score: 165
Period size: 34 Copynumber: 2.8 Consensus size: 34
1251902 TATTTAAGTA
1251912 TTAAACTCATATTTTTATTTTTCAAATTCATATC
1 TTAAACTCATATTTTTATTTTTCAAATTCATATC
1251946 TTAAACTCATATTTTTATTTTT-AAATTCATATC
1 TTAAACTCATATTTTTATTTTTCAAATTCATATC
*
1251979 TTAAATTCATATATTTTATTTTTCAAAT
1 TTAAACTCATAT-TTTTATTTTTCAAAT
1252007 ATAATTTTAA
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
33 22 0.38
34 32 0.55
35 4 0.07
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.55
Consensus pattern (34 bp):
TTAAACTCATATTTTTATTTTTCAAATTCATATC
Found at i:1252026 original size:11 final size:11
Alignment explanation
Indices: 1251998--1252033 Score: 54
Period size: 11 Copynumber: 3.1 Consensus size: 11
1251988 TATATTTTAT
1251998 TTTTCAAATATAA
1 TTTT-AAATAT-A
1252011 TTTTAAATATA
1 TTTTAAATATA
1252022 TTTTAAATATA
1 TTTTAAATATA
1252033 T
1 T
1252034 ATATTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 13 0.57
12 6 0.26
13 4 0.17
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (11 bp):
TTTTAAATATA
Found at i:1252033 original size:13 final size:13
Alignment explanation
Indices: 1251998--1252042 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
1251988 TATATTTTAT
1251998 TTTTCAAATATA-A
1 TTTT-AAATATATA
1252011 TTTT-AA-ATATA
1 TTTTAAATATATA
1252022 TTTTAAATATATA
1 TTTTAAATATATA
*
1252035 TATTAAAT
1 TTTTAAAT
1252043 TTAATTCACA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 3 0.11
11 7 0.25
12 2 0.07
13 16 0.57
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (13 bp):
TTTTAAATATATA
Found at i:1265579 original size:20 final size:21
Alignment explanation
Indices: 1265554--1265594 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
1265544 GTTTGTTAGA
1265554 TTGGTTA-AGATTGTTAAAGG
1 TTGGTTAGAGATTGTTAAAGG
*
1265574 TTGGTTATGAGTTTGTTAAAG
1 TTGGTTA-GAGATTGTTAAAG
1265595 CTGATGTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.44
Consensus pattern (21 bp):
TTGGTTAGAGATTGTTAAAGG
Found at i:1267342 original size:85 final size:85
Alignment explanation
Indices: 1267115--1267363 Score: 319
Period size: 85 Copynumber: 3.0 Consensus size: 85
1267105 ACAGCGTTTG
* * * *
1267115 TCTTTACAAACGCCACTATTGAATGTGTATTTAGCGGCGTTTAT-ATACAAACGCCGCTATTGAT
1 TCTTTACAAACGCCGCTATTGACTGTGTATTTAGCGGCGTTTTTCTTACAAACGCCGCTATTG-T
* *
1267179 -TGTGTATTTAGCGAC-GTTT
65 CTGTGTATTTAGCGGCATTTT
* * * *
1267198 T-TTAACAAACACCGCTA-TGACTTTATATTTAGCGGCGTTTTTCTTTACAAACGCCGCTATTGT
1 TCTTTACAAACGCCGCTATTGACTGTGTATTTAGCGGCGTTTTTC-TTACAAACGCCGCTATTGT
*
1267261 CTGTATATTTAGCGGCATTTT
65 CTGTGTATTTAGCGGCATTTT
* *
1267282 TCTTTACAAACGCCGCTATTGACTGTGTATTTAGCGACGTTTTTCTTACAAACGCCGCTATTGAC
1 TCTTTACAAACGCCGCTATTGACTGTGTATTTAGCGGCGTTTTTCTTACAAACGCCGCTATTGTC
*
1267347 TGTGTATTTAGTGGCAT
66 TGTGTATTTAGCGGCAT
1267364 CTGTAATTAA
Statistics
Matches: 141, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
81 21 0.15
82 14 0.10
83 31 0.22
84 4 0.03
85 48 0.34
86 23 0.16
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.39
Consensus pattern (85 bp):
TCTTTACAAACGCCGCTATTGACTGTGTATTTAGCGGCGTTTTTCTTACAAACGCCGCTATTGTC
TGTGTATTTAGCGGCATTTT
Found at i:1267344 original size:42 final size:43
Alignment explanation
Indices: 1267108--1267357 Score: 323
Period size: 43 Copynumber: 6.0 Consensus size: 43
1267098 ACATATAACA
* * *
1267108 GCGTTTGTCTTTACAAACGCCACTATTGAATGTGTATTTAGCG
1 GCGTTTTTCTTTACAAACGCCGCTATTGACTGTGTATTTAGCG
* * *
1267151 GCG--TTTATATACAAACGCCGCTATTGATTGTGTATTTAGCG
1 GCGTTTTTCTTTACAAACGCCGCTATTGACTGTGTATTTAGCG
* * * * *
1267192 ACG-TTTT-TTAACAAACACCGCTA-TGACTTTATATTTAGCG
1 GCGTTTTTCTTTACAAACGCCGCTATTGACTGTGTATTTAGCG
* *
1267232 GCGTTTTTCTTTACAAACGCCGCTATTGTCTGTATATTTAGCG
1 GCGTTTTTCTTTACAAACGCCGCTATTGACTGTGTATTTAGCG
*
1267275 GCATTTTTCTTTACAAACGCCGCTATTGACTGTGTATTTAGCG
1 GCGTTTTTCTTTACAAACGCCGCTATTGACTGTGTATTTAGCG
*
1267318 ACGTTTTTC-TTACAAACGCCGCTATTGACTGTGTATTTAG
1 GCGTTTTTCTTTACAAACGCCGCTATTGACTGTGTATTTAG
1267358 TGGCATCTGT
Statistics
Matches: 181, Mismatches: 22, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
40 16 0.09
41 52 0.29
42 48 0.27
43 65 0.36
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (43 bp):
GCGTTTTTCTTTACAAACGCCGCTATTGACTGTGTATTTAGCG
Found at i:1270058 original size:22 final size:22
Alignment explanation
Indices: 1270031--1270082 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
1270021 TATTTTGATA
1270031 AATTTAATGTTTATTTTATAAT
1 AATTTAATGTTTATTTTATAAT
1270053 AATTTAATGTTTATTTTATAAT
1 AATTTAATGTTTATTTTATAAT
1270075 AATTTAAT
1 AATTTAAT
1270083 AAAATTACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (22 bp):
AATTTAATGTTTATTTTATAAT
Found at i:1270565 original size:41 final size:41
Alignment explanation
Indices: 1270517--1270934 Score: 517
Period size: 41 Copynumber: 10.2 Consensus size: 41
1270507 TTGTAAACAC
* * *
1270517 AAACGCCACTAAAACACGAGTCTATAGCAGCGTTTGTATAA
1 AAACGCCACTAAATCATGAGTCTATAGCGGCGTTTGTATAA
1270558 AAACGCCACTAAATCATGAGTCTATAGCGGCGTTTGTA-AA
1 AAACGCCACTAAATCATGAGTCTATAGCGGCGTTTGTATAA
* *
1270598 AAACGTCACTAAATCACGAGTCTATAGCGGCGTTTGTA-ACA
1 AAACGCCACTAAATCATGAGTCTATAGCGGCGTTTGTATA-A
*
1270639 AACACGCCACTAAAAT-ATGAGTCTTTAGCGGCGTTTGTATAA
1 AA-ACGCCACT-AAATCATGAGTCTATAGCGGCGTTTGTATAA
* *
1270681 AAACGCCACTAAAGT-ACGAGTCTTTAGCGGCGTTTGTATAA
1 AAACGCCACTAAA-TCATGAGTCTATAGCGGCGTTTGTATAA
* *
1270722 AAACACCACTAAATCATGAGTCTATAGCGGGGTTTGTATAA
1 AAACGCCACTAAATCATGAGTCTATAGCGGCGTTTGTATAA
*
1270763 AAACGCCACTAAATCATGAGTCTATAACGGCGTTTGTATAAA
1 AAACGCCACTAAATCATGAGTCTATAGCGGCGTTTGTAT-AA
*
1270805 AAACGCCACTAAAGT-ATAAGTCTATAGCGGCGTTTGTATAA
1 AAACGCCACTAAA-TCATGAGTCTATAGCGGCGTTTGTATAA
* * * *
1270846 AAATGCCACTAAATTAT-AGACTTTAGCGGCGTTTGTATAA
1 AAACGCCACTAAATCATGAGTCTATAGCGGCGTTTGTATAA
* * * * * *
1270886 AAATGCCTCTATAGT-AGGAGTCTTTAGCGGCGTTTGTTCTAA
1 AAACGCCACTA-AATCATGAGTCTATAGCGGCGTTTG-TATAA
1270928 AAACGCC
1 AAACGCC
1270935 GCTACAAATG
Statistics
Matches: 338, Mismatches: 27, Indels: 23
0.87 0.07 0.06
Matches are distributed among these distances:
40 76 0.22
41 178 0.53
42 78 0.23
43 6 0.02
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (41 bp):
AAACGCCACTAAATCATGAGTCTATAGCGGCGTTTGTATAA
Found at i:1273883 original size:6 final size:6
Alignment explanation
Indices: 1273872--1273896 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
1273862 TGATAAAGAA
1273872 GCGGAT GCGGAT GCGGAT GCGGAT G
1 GCGGAT GCGGAT GCGGAT GCGGAT G
1273897 ATGTGAACGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.52, T:0.16
Consensus pattern (6 bp):
GCGGAT
Found at i:1277552 original size:30 final size:31
Alignment explanation
Indices: 1277516--1277587 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 31
1277506 CTACAAGACA
* * * *
1277516 TTGAAAATTTTGGGGACCATTTTG-TAATTT
1 TTGAAAAGTTAGGGGACCAATTCGATAATTT
1277546 TTGAAAAGTTAGGGGACCAATTCGATAATTT
1 TTGAAAAGTTAGGGGACCAATTCGATAATTT
*
1277577 TGGAAAAGTTA
1 TTGAAAAGTTA
1277588 TGAATGGTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 20 0.56
31 16 0.44
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (31 bp):
TTGAAAAGTTAGGGGACCAATTCGATAATTT
Found at i:1284562 original size:20 final size:20
Alignment explanation
Indices: 1284522--1284559 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1284512 TTGGACTTTA
*
1284522 ATGTTAGAGTGTTGAAATTG
1 ATGTTAGAATGTTGAAATTG
1284542 ATGTTAGAATG-TGAAATT
1 ATGTTAGAATGTTGAAATT
1284560 TGACTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.39
Consensus pattern (20 bp):
ATGTTAGAATGTTGAAATTG
Found at i:1288837 original size:179 final size:182
Alignment explanation
Indices: 1288535--1288897 Score: 705
Period size: 179 Copynumber: 2.0 Consensus size: 182
1288525 TTTGGAATTT
1288535 TTTGGATTTTTTCTTTTTTTTCCAATGAAAATCAGCAAATTAACAAAAAGAAAATCGAACCTAAA
1 TTTGGATTTTTTCTTTTTTTTCCAATGAAAATCAGCAAATTAACAAAAAGAAAATCGAACCTAAA
1288600 TTAAAAAATTGCAAAAAGAACCTGAAAACGATAAATCTTTGCAAACTAGCTTCAGTGGGGTACTT
66 TTAAAAAATTGCAAAAAGAACCTGAAAACGATAAATCTTTGCAAACTAGCTTCAGTGGGGTACTT
1288665 CAAAGATTAA-TTTTGAAGAACAAGTAAAATTTCTTTGATTCTTCCCAAGAA
131 CAAAGATTAATTTTTGAAGAACAAGTAAAATTTCTTTGATTCTTCCCAAGAA
1288716 TTTGGATTTTTTC-TTTTTTTCCAATGAAAATCAGCAAATTAACAAAAAG-AAATCGAACCTAAA
1 TTTGGATTTTTTCTTTTTTTTCCAATGAAAATCAGCAAATTAACAAAAAGAAAATCGAACCTAAA
1288779 TTAAAAAATTGCAAAAAGAACCTGAAAACGATAAATCTTTGCAAACTAGCTTCAGTGGGGTACTT
66 TTAAAAAATTGCAAAAAGAACCTGAAAACGATAAATCTTTGCAAACTAGCTTCAGTGGGGTACTT
1288844 CAAAGATTAATTTTTGAAGAACAAGTAAAATTTCTTTGATTCTTCCCAAGAA
131 CAAAGATTAATTTTTGAAGAACAAGTAAAATTTCTTTGATTCTTCCCAAGAA
1288896 TT
1 TT
1288898 GTCCTAACTC
Statistics
Matches: 181, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
179 89 0.49
180 79 0.44
181 13 0.07
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (182 bp):
TTTGGATTTTTTCTTTTTTTTCCAATGAAAATCAGCAAATTAACAAAAAGAAAATCGAACCTAAA
TTAAAAAATTGCAAAAAGAACCTGAAAACGATAAATCTTTGCAAACTAGCTTCAGTGGGGTACTT
CAAAGATTAATTTTTGAAGAACAAGTAAAATTTCTTTGATTCTTCCCAAGAA
Found at i:1292326 original size:2 final size:2
Alignment explanation
Indices: 1292319--1292354 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1292309 ATAAACTTTA
1292319 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1292355 TAAATGTCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1293812 original size:21 final size:20
Alignment explanation
Indices: 1293726--1293883 Score: 77
Period size: 21 Copynumber: 7.8 Consensus size: 20
1293716 AAATGACCAA
**
1293726 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
1293745 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
1293765 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
1293785 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
1293806 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* * **
1293827 CAAATTTGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
1293847 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
1293868 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
1293884 ACACATAAAT
Statistics
Matches: 102, Mismatches: 31, Indels: 11
0.71 0.22 0.08
Matches are distributed among these distances:
19 16 0.16
20 41 0.40
21 45 0.44
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.20
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:1293912 original size:20 final size:20
Alignment explanation
Indices: 1293850--1294043 Score: 205
Period size: 20 Copynumber: 9.7 Consensus size: 20
1293840 CGATTTTCCA
* ** *
1293850 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
1293870 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
*
1293890 AAATCGCAACTCGTATCCGT
1 AAATCGCAACGCGTATCCGT
1293910 AAATCGCAAC-CTGTATCCGT
1 AAATCGCAACGC-GTATCCGT
**
1293930 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
1293950 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
1293970 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
1293990 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
1294010 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
1294031 AAATCGCAACGCG
1 AAATCGCAACGCG
1294044 ATATTTAAAG
Statistics
Matches: 145, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
19 3 0.02
20 123 0.85
21 18 0.12
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:1293934 original size:60 final size:60
Alignment explanation
Indices: 1293850--1294043 Score: 230
Period size: 60 Copynumber: 3.2 Consensus size: 60
1293840 CGATTTTCCA
* ** * *
1293850 AAATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACTCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACTCGTATCCGT
* ***
1293910 AAATCGCAAC-CTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAA-TGCGTATCCGT
1 AAATCGCAACGC-GTATCCGTAAATCGCAACGCGAATACATAAATCGCAACT-CGTATCCGT
* ** *
1293970 ATATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACTCGTATCCGT
1294031 AAATCGCAACGCG
1 AAATCGCAACGCG
1294044 ATATTTAAAG
Statistics
Matches: 111, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
59 2 0.02
60 78 0.70
61 31 0.28
ACGTcount: A:0.36, C:0.26, G:0.19, T:0.20
Consensus pattern (60 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACTCGTATCCGT
Found at i:1294463 original size:33 final size:33
Alignment explanation
Indices: 1294424--1294494 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
1294414 TTCACTTAGA
*
1294424 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
1294457 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
1294490 TTTCA
1 TTTCA
1294495 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Done.