Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008662.1 Hibiscus syriacus cultivar Beakdansim tig00111662_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1703488
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 8
Found at i:529444 original size:15 final size:15
Alignment explanation
Indices: 529421--529459 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
529411 TAAATATTTT
*
529421 CAAAATAATTTATTA
1 CAAATTAATTTATTA
*
529436 CAAATTAATTTATTG
1 CAAATTAATTTATTA
529451 CAAATTAAT
1 CAAATTAAT
529460 AATAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (15 bp):
CAAATTAATTTATTA
Found at i:536655 original size:33 final size:33
Alignment explanation
Indices: 536608--536678 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
536598 ACGAAGTTTA
* * * *
536608 CGAT-AATTGAAATACTTAAATACTTCTAAGTT
1 CGATAAATTCAAATACTTAAAAACGTCCAAGTT
536640 CGATAAATTCAAATACTTAAAAACGTCCAAGTT
1 CGATAAATTCAAATACTTAAAAACGTCCAAGTT
536673 CGATAA
1 CGATAA
536679 TTGAAACAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 4 0.12
33 30 0.88
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (33 bp):
CGATAAATTCAAATACTTAAAAACGTCCAAGTT
Found at i:536699 original size:21 final size:21
Alignment explanation
Indices: 536674--536715 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
536664 GTCCAAGTTC
536674 GATAATTGAAACAAAGTTTAA
1 GATAATTGAAACAAAGTTTAA
*
536695 GATAATTGAAATAAAGTTTAA
1 GATAATTGAAACAAAGTTTAA
536716 AAATAAACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.52, C:0.02, G:0.14, T:0.31
Consensus pattern (21 bp):
GATAATTGAAACAAAGTTTAA
Found at i:540548 original size:30 final size:30
Alignment explanation
Indices: 540513--540578 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
540503 AGAACCGGAA
*
540513 GAACCGGCTGAAAATCGGAAAAACCGGGGT
1 GAACCGGCTGAAAACCGGAAAAACCGGGGT
* **
540543 GAACCGGCTGAAAACCGGCAAAACCGGTTT
1 GAACCGGCTGAAAACCGGAAAAACCGGGGT
540573 GAACCG
1 GAACCG
540579 CCGGTTCACT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.35, C:0.24, G:0.30, T:0.11
Consensus pattern (30 bp):
GAACCGGCTGAAAACCGGAAAAACCGGGGT
Found at i:540817 original size:25 final size:24
Alignment explanation
Indices: 540789--540859 Score: 97
Period size: 24 Copynumber: 2.9 Consensus size: 24
540779 ACTCAAAAAA
* *
540789 AAAATTAGAAGTTCGATTGAAGCCT
1 AAAATTAG-AGCTCAATTGAAGCCT
*
540814 AAAATTTGAGCTCAATTGAAGCCT
1 AAAATTAGAGCTCAATTGAAGCCT
*
540838 AAAATTTGAGCTCAATTGAAGC
1 AAAATTAGAGCTCAATTGAAGC
540860 GAAAGAATAG
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
24 36 0.84
25 7 0.16
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (24 bp):
AAAATTAGAGCTCAATTGAAGCCT
Found at i:540833 original size:24 final size:24
Alignment explanation
Indices: 540804--540859 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
540794 TAGAAGTTCG
540804 ATTGAAGCCTAAAATTTGAGCTCA
1 ATTGAAGCCTAAAATTTGAGCTCA
540828 ATTGAAGCCTAAAATTTGAGCTCA
1 ATTGAAGCCTAAAATTTGAGCTCA
540852 ATTGAAGC
1 ATTGAAGC
540860 GAAAGAATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (24 bp):
ATTGAAGCCTAAAATTTGAGCTCA
Found at i:556575 original size:24 final size:25
Alignment explanation
Indices: 556528--556576 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
556518 TTGAAAGTTG
**
556528 ACAAATCCACCGAAAAGTTTAAAAA
1 ACAAATCCACCGAAAAGTGCAAAAA
*
556553 ACAAATGCACCG-AAAGTGCAAAAA
1 ACAAATCCACCGAAAAGTGCAAAAA
556577 TTAAATACAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.55, C:0.20, G:0.12, T:0.12
Consensus pattern (25 bp):
ACAAATCCACCGAAAAGTGCAAAAA
Found at i:559565 original size:4 final size:4
Alignment explanation
Indices: 559556--559595 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
559546 TGCATGTATT
559556 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
559596 GTTGAACAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:561328 original size:2 final size:2
Alignment explanation
Indices: 561321--561376 Score: 59
Period size: 2 Copynumber: 29.5 Consensus size: 2
561311 GAATATTAAC
561321 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TCA T- TA -A T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA
561360 TA TA -A TA TA GTA TA TA T
1 TA TA TA TA TA -TA TA TA T
561377 TTTAATTTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
1 5 0.11
2 38 0.81
3 4 0.09
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:561513 original size:21 final size:21
Alignment explanation
Indices: 561470--561513 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
561460 AATATGAAAC
* * *
561470 ATTAATTATATCATATTATTT
1 ATTAACTATATCATATCAATT
*
561491 ATTAACTATATTATATCAATT
1 ATTAACTATATCATATCAATT
561512 AT
1 AT
561514 ATCTCCATGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTAACTATATCATATCAATT
Found at i:562134 original size:39 final size:39
Alignment explanation
Indices: 562091--562201 Score: 131
Period size: 39 Copynumber: 2.8 Consensus size: 39
562081 TTTTAAAAAT
562091 AATTTAGAATGTTAATGTGAAATAATTTAAGAAATTAAG
1 AATTTAGAATGTTAATGTGAAATAATTTAAGAAATTAAG
* *
562130 AATTTAGAATGTT-TTGGTGGTAAAT--TTTAAGAAATTAGG
1 AATTTAGAATGTTAAT-GT-G-AAATAATTTAAGAAATTAAG
*
562169 AATTTAGAATGTTAGA-GTGAAATAATTTGAGAA
1 AATTTAGAATGTTA-ATGTGAAATAATTTAAGAA
562202 TTATAAATAA
Statistics
Matches: 61, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
37 4 0.07
38 2 0.03
39 50 0.82
40 1 0.02
41 4 0.07
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (39 bp):
AATTTAGAATGTTAATGTGAAATAATTTAAGAAATTAAG
Found at i:567411 original size:22 final size:22
Alignment explanation
Indices: 567386--567428 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
567376 AATAAAATAA
567386 AAATAGTAACC-AAATTATAATT
1 AAATAGTAACCGAAA-TATAATT
*
567408 AAATAGTGACCGAAATATAAT
1 AAATAGTAACCGAAATATAAT
567429 CAAACAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.28
Consensus pattern (22 bp):
AAATAGTAACCGAAATATAATT
Found at i:569783 original size:19 final size:19
Alignment explanation
Indices: 569759--569795 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
569749 ATGTTGGGCT
* *
569759 AATTAAATAAATGGATATA
1 AATTAAACAAATCGATATA
569778 AATTAAACAAATCGATAT
1 AATTAAACAAATCGATAT
569796 GGAATGAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.05, G:0.08, T:0.30
Consensus pattern (19 bp):
AATTAAACAAATCGATATA
Found at i:572124 original size:26 final size:25
Alignment explanation
Indices: 572082--572131 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
572072 TCCTCGAACA
572082 TTTGAAAATTTGTTTTATTGGATTT
1 TTTGAAAATTTGTTTTATTGGATTT
*
572107 TTTGAAAGATTT-TCTTTATTTGATT
1 TTTGAAA-ATTTGT-TTTATTGGATT
572132 ATATTCGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.24, C:0.02, G:0.14, T:0.60
Consensus pattern (25 bp):
TTTGAAAATTTGTTTTATTGGATTT
Found at i:573138 original size:24 final size:24
Alignment explanation
Indices: 573106--573170 Score: 103
Period size: 24 Copynumber: 2.7 Consensus size: 24
573096 TTCGTGAATT
* *
573106 TTCGATTATATTCGTTCGGTTATG
1 TTCGTTTATGTTCGTTCGGTTATG
*
573130 TTTGTTTATGTTCGTTCGGTTATG
1 TTCGTTTATGTTCGTTCGGTTATG
573154 TTCGTTTATGTTCGTTC
1 TTCGTTTATGTTCGTTC
573171 ATTTAAACCC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.11, C:0.12, G:0.22, T:0.55
Consensus pattern (24 bp):
TTCGTTTATGTTCGTTCGGTTATG
Found at i:573170 original size:14 final size:14
Alignment explanation
Indices: 573106--573159 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
573096 TTCGTGAATT
* *
573106 TTCGATTATATTCG
1 TTCGGTTATGTTCG
573120 TTCGGTTATG-T--
1 TTCGGTTATGTTCG
*
573131 TT-GTTTATGTTCG
1 TTCGGTTATGTTCG
573144 TTCGGTTATGTTCG
1 TTCGGTTATGTTCG
573158 TT
1 TT
573160 TATGTTCGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
10 6 0.19
11 3 0.09
13 3 0.09
14 20 0.62
ACGTcount: A:0.11, C:0.11, G:0.22, T:0.56
Consensus pattern (14 bp):
TTCGGTTATGTTCG
Found at i:573900 original size:16 final size:16
Alignment explanation
Indices: 573877--573934 Score: 89
Period size: 16 Copynumber: 3.6 Consensus size: 16
573867 GGGTCTCCAA
573877 CGTTTATGTTCGTGTT
1 CGTTTATGTTCGTGTT
* *
573893 CATTTATGTTCGTATT
1 CGTTTATGTTCGTGTT
*
573909 CGTTTATGTTCGTGTG
1 CGTTTATGTTCGTGTT
573925 CGTTTATGTT
1 CGTTTATGTT
573935 TGTTTATTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.10, C:0.12, G:0.22, T:0.55
Consensus pattern (16 bp):
CGTTTATGTTCGTGTT
Found at i:574290 original size:27 final size:28
Alignment explanation
Indices: 574214--574290 Score: 88
Period size: 28 Copynumber: 2.8 Consensus size: 28
574204 TATAAACGAA
574214 AAACTATAATTATTAGAAAA-TAGAAAT
1 AAACTATAATTATTAGAAAATTAGAAAT
* * *
574241 AAACAAATAGTTATTA-AATAATTA-AATT
1 AAAC-TATAATTATTAGAA-AATTAGAAAT
574269 AAACTATAATTATTAGAAAATT
1 AAACTATAATTATTAGAAAATT
574291 CATTACATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
27 19 0.46
28 20 0.49
29 2 0.05
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.34
Consensus pattern (28 bp):
AAACTATAATTATTAGAAAATTAGAAAT
Found at i:576095 original size:17 final size:15
Alignment explanation
Indices: 576073--576116 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
576063 GTTTTTTCGG
576073 TTCGGTTCGGTTTTT
1 TTCGGTTCGGTTTTT
*
576088 TTAACGGTTCGG-GTTT
1 TT--CGGTTCGGTTTTT
576104 TTCGGTTCGGTTT
1 TTCGGTTCGGTTT
576117 GGTTTATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
14 8 0.33
15 3 0.12
16 5 0.21
17 8 0.33
ACGTcount: A:0.05, C:0.14, G:0.30, T:0.52
Consensus pattern (15 bp):
TTCGGTTCGGTTTTT
Found at i:576120 original size:18 final size:18
Alignment explanation
Indices: 576065--576128 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
576055 CGAAACCGGT
576065 TTTTTCGGTTCGGTTCGG
1 TTTTTCGGTTCGGTTCGG
576083 TTTTT---TTAACGGTTCGGG
1 TTTTTCGGTT--CGGTTC-GG
*
576101 TTTTTCGGTTCGGTTTGG
1 TTTTTCGGTTCGGTTCGG
*
576119 TTTATCGGTT
1 TTTTTCGGTT
576129 TTTCAATAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
15 2 0.05
17 6 0.16
18 23 0.61
19 5 0.13
21 2 0.05
ACGTcount: A:0.05, C:0.12, G:0.30, T:0.53
Consensus pattern (18 bp):
TTTTTCGGTTCGGTTCGG
Found at i:579764 original size:2 final size:2
Alignment explanation
Indices: 579757--579781 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
579747 TTATAAAATA
579757 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
579782 CACACACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:585307 original size:12 final size:12
Alignment explanation
Indices: 585281--585315 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
585271 TGAAAATATT
*
585281 AAAAATATTATAA
1 AAAAAT-TTAAAA
585294 AAAAATTTAAAA
1 AAAAATTTAAAA
585306 AAAAATTTAA
1 AAAAATTTAA
585316 TATAAATCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 15 0.71
13 6 0.29
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AAAAATTTAAAA
Found at i:585495 original size:25 final size:26
Alignment explanation
Indices: 585445--585513 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 26
585435 TATTCTTACT
* *
585445 GAATTAATCAAGACTTACAAAATTTA
1 GAATTAGTCAAGACTTATAAAATTTA
**
585471 -AATTAGTCAAGACTTATAATTTTTA
1 GAATTAGTCAAGACTTATAAAATTTA
*
585496 GGATTAGTCGAA-ACTTAT
1 GAATTAGTC-AAGACTTAT
585514 TATGTTTTCT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 21 0.58
26 13 0.36
27 2 0.06
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (26 bp):
GAATTAGTCAAGACTTATAAAATTTA
Found at i:585660 original size:25 final size:25
Alignment explanation
Indices: 585615--585670 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
585605 ATAATTTTCA
*
585615 ACTAATTCAAAATTTGTAAGTATCG
1 ACTAATTCAAAATTTGCAAGTATCG
* *
585640 ACTAATT-TAAATTTGGCAAGTCTCG
1 ACTAATTCAAAATTT-GCAAGTATCG
*
585665 ATTAAT
1 ACTAAT
585671 CTAGTAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (25 bp):
ACTAATTCAAAATTTGCAAGTATCG
Found at i:597330 original size:12 final size:12
Alignment explanation
Indices: 597313--597338 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
597303 ACTGTACACG
597313 TACCAATGGCTC
1 TACCAATGGCTC
597325 TACCAATGGCTC
1 TACCAATGGCTC
597337 TA
1 TA
597339 GAGAAACCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (12 bp):
TACCAATGGCTC
Found at i:602677 original size:32 final size:31
Alignment explanation
Indices: 602595--602683 Score: 108
Period size: 32 Copynumber: 2.9 Consensus size: 31
602585 GAAGGACCTA
* *
602595 TCCATATGTTCCGAAGAACATAGGT-AACTG
1 TCCATATGTCCCGAAGGACATAGGTAAACTG
* * *
602625 TCCATATATCCCAAATGACATAGGTAATACTG
1 TCCATATGTCCCGAAGGACATAGGTAA-ACTG
*
602657 TCTATATGTCCCGAAGGACATAGGTAA
1 TCCATATGTCCCGAAGGACATAGGTAA
602684 CCCTCGACTC
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
30 20 0.42
31 1 0.02
32 27 0.56
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (31 bp):
TCCATATGTCCCGAAGGACATAGGTAAACTG
Found at i:606411 original size:15 final size:16
Alignment explanation
Indices: 606380--606412 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
606370 ATTACCACAC
*
606380 TATAATGTTACATAAT
1 TATAATCTTACATAAT
606396 TATAATCTTA-ATAAT
1 TATAATCTTACATAAT
606411 TA
1 TA
606413 AAAAATGTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (16 bp):
TATAATCTTACATAAT
Found at i:610276 original size:59 final size:59
Alignment explanation
Indices: 610184--610301 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
610174 TGTATCATCT
610184 GTAAAATCAGAATGAAATTACAATCATGCCAGTTTTCAATGTGTTACTGTCAAGTGAAC
1 GTAAAATCAGAATGAAATTACAATCATGCCAGTTTTCAATGTGTTACTGTCAAGTGAAC
610243 GTAAAATCAGAATGAAATTACAATCATGCCAGTTTTCAATGTGTTACTGTCAAGTGAAC
1 GTAAAATCAGAATGAAATTACAATCATGCCAGTTTTCAATGTGTTACTGTCAAGTGAAC
610302 AATTTGATGA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (59 bp):
GTAAAATCAGAATGAAATTACAATCATGCCAGTTTTCAATGTGTTACTGTCAAGTGAAC
Found at i:612177 original size:21 final size:21
Alignment explanation
Indices: 612151--612192 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
612141 TCAAATATTA
612151 TTGCACCTAATTTTGACATTG
1 TTGCACCTAATTTTGACATTG
612172 TTGCACCTAATTTTGACATTG
1 TTGCACCTAATTTTGACATTG
612193 CAATATTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (21 bp):
TTGCACCTAATTTTGACATTG
Found at i:616818 original size:23 final size:21
Alignment explanation
Indices: 616788--616845 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
616778 ATTTACCCAT
616788 TTAATTTTCAAACATTATTGCAC
1 TTAATTTT--AACATTATTGCAC
* *
616811 TTAATTTTGACATTGTTGCAC
1 TTAATTTTAACATTATTGCAC
* *
616832 CTAATTTTGACATT
1 TTAATTTTAACATT
616846 GCAATATTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
21 24 0.75
23 8 0.25
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.47
Consensus pattern (21 bp):
TTAATTTTAACATTATTGCAC
Found at i:616829 original size:21 final size:21
Alignment explanation
Indices: 616799--616846 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
616789 TAATTTTCAA
* *
616799 ACATTATTGCACTTAATTTTG
1 ACATTGTTGCACCTAATTTTG
616820 ACATTGTTGCACCTAATTTTG
1 ACATTGTTGCACCTAATTTTG
616841 ACATTG
1 ACATTG
616847 CAATATTAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (21 bp):
ACATTGTTGCACCTAATTTTG
Found at i:619848 original size:3 final size:3
Alignment explanation
Indices: 619840--619908 Score: 77
Period size: 3 Copynumber: 22.7 Consensus size: 3
619830 TTTGTATATC
* * * *
619840 AAT AAT AAT AAT AAA AAT AAT AGT AGT AAT AAT TAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
619888 AATT AA- AAT AAAT AAT AAT AA
1 AA-T AAT AAT -AAT AAT AAT AA
619909 AAAAGACTCG
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
2 2 0.04
3 49 0.86
4 6 0.11
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:620330 original size:127 final size:130
Alignment explanation
Indices: 620099--620407 Score: 383
Period size: 127 Copynumber: 2.4 Consensus size: 130
620089 TGGTCGTCTA
* * * * ** * *
620099 AGGGTGACACGGATCTTACATGATAAGGATATCTGATCGGGGATGACACTACACATACGTGATAA
1 AGGGGGACACGGCTCATACATGATGAGGAGGTCTGGTCGGGGATGACACTACACATACATGATAA
* *
620164 AGAGTTTTTGGCCATCTTTAGGAAGGGTGATAACACGGTTCCTACGTGATGAGGA-C-GG-ATCT
66 AGAGTTCTTGGCCATCTTTAGGAAGGGTGATAACACGGTTCCTACGCGATGAGGAGCTGGTATCT
* * * * *
620226 AGGGGGACACGGCTCCTACATGATGAGGAGGTATGGTCGGGGATGACACTGCTCATACATGATGA
1 AGGGGGACACGGCTCATACATGATGAGGAGGTCTGGTCGGGGATGACACTACACATACATGATAA
*
620291 AGAGTTCTTGGTCATCTTTAGGAAGGGTGATAACACGGTTCCTACGCGATGAGGATGGCTGGTTA
66 AGAGTTCTTGGCCATCTTTAGGAAGGGTGATAACACGGTTCCTACGCGATGAGGA--GCTGG-TA
620356 TCT
128 TCT
* * *
620359 A-GGGGACACGGCTCATACGTGATGAAGAGGTCTGGTCAGTGGATGACAC
1 AGGGGGACACGGCTCATACATGATGAGGAGGTCTGGTC-GGGGATGACAC
620408 GGTTCTTATG
Statistics
Matches: 155, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
127 105 0.68
130 1 0.01
131 2 0.01
132 32 0.21
133 15 0.10
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.25
Consensus pattern (130 bp):
AGGGGGACACGGCTCATACATGATGAGGAGGTCTGGTCGGGGATGACACTACACATACATGATAA
AGAGTTCTTGGCCATCTTTAGGAAGGGTGATAACACGGTTCCTACGCGATGAGGAGCTGGTATCT
Found at i:620685 original size:31 final size:32
Alignment explanation
Indices: 620634--620726 Score: 109
Period size: 31 Copynumber: 2.8 Consensus size: 32
620624 CAAAGATCGG
*
620634 TGTTTCGAGAGAAACAACTCAAAGATG-T-TTT
1 TGTTTCAAGA-AAACAACTCAAAGATGTTGTTT
620665 TGTTTCAAGAAAACATACTCAAAGATTTGTTTGTTT
1 TGTTTCAAGAAAACA-ACTCAAAGA--TG-TTGTTT
*
620701 TGTTTCAAGGAAACAACTCAAAGATG
1 TGTTTCAAGAAAACAACTCAAAGATG
620727 GTAAATTTCT
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
30 5 0.09
31 18 0.33
33 4 0.07
35 10 0.19
36 17 0.31
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (32 bp):
TGTTTCAAGAAAACAACTCAAAGATGTTGTTT
Found at i:620874 original size:39 final size:39
Alignment explanation
Indices: 620796--620874 Score: 88
Period size: 39 Copynumber: 2.0 Consensus size: 39
620786 AAGAGATAAA
* * *
620796 ATTTTGTTATCAAAGAAACATACTCAAAGATTTTTTTTC
1 ATTTTGTTATCAAAGAAACAAACTCAAAGACTTTGTTTC
* **
620835 ATTTTGTT-TCAAGTGAAACAAACTCAAATCCTTTGTTTC
1 ATTTTGTTATCAA-AGAAACAAACTCAAAGACTTTGTTTC
620874 A
1 A
620875 AAAGAAATGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
38 4 0.12
39 29 0.88
ACGTcount: A:0.34, C:0.15, G:0.09, T:0.42
Consensus pattern (39 bp):
ATTTTGTTATCAAAGAAACAAACTCAAAGACTTTGTTTC
Found at i:620972 original size:36 final size:36
Alignment explanation
Indices: 620931--621024 Score: 111
Period size: 36 Copynumber: 2.6 Consensus size: 36
620921 ATAATTTGGA
* * *
620931 AAATTATCTC-AGTGAGACACACATTTGTTTTTAGAG
1 AAATTATCTCAAGCGAGACA-AAAATTGTTTTTAGAG
*
620967 AAATTATCTCTAA-CAAGACAAAAATTGTTTTTAGAG
1 AAATTATCTC-AAGCGAGACAAAAATTGTTTTTAGAG
*
621003 AAATTGTCTCAAGCGAGACAAA
1 AAATTATCTCAAGCGAGACAAA
621025 GTTTGGTTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
35 2 0.04
36 41 0.84
37 5 0.10
38 1 0.02
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (36 bp):
AAATTATCTCAAGCGAGACAAAAATTGTTTTTAGAG
Found at i:621727 original size:8 final size:8
Alignment explanation
Indices: 621714--621823 Score: 130
Period size: 8 Copynumber: 13.8 Consensus size: 8
621704 ATAAATGTTA
621714 ATGCATGT
1 ATGCATGT
621722 ATGCATGT
1 ATGCATGT
* *
621730 ACGCATGC
1 ATGCATGT
621738 ATGCATGT
1 ATGCATGT
621746 ATGCATGT
1 ATGCATGT
*
621754 ACGCATGT
1 ATGCATGT
* *
621762 ACGCATAT
1 ATGCATGT
621770 ATGCATGT
1 ATGCATGT
* *
621778 ACGTATGT
1 ATGCATGT
621786 ATGCATGT
1 ATGCATGT
*
621794 ATGCATGC
1 ATGCATGT
*
621802 ATGGATGT
1 ATGCATGT
*
621810 ATACATGT
1 ATGCATGT
621818 ATGCAT
1 ATGCAT
621824 ATCATATGTA
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 84 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (8 bp):
ATGCATGT
Found at i:621746 original size:24 final size:24
Alignment explanation
Indices: 621714--621823 Score: 148
Period size: 24 Copynumber: 4.6 Consensus size: 24
621704 ATAAATGTTA
*
621714 ATGCATGTATGCATGTACGCATGC
1 ATGCATGTATGCATGTACGCATGT
621738 ATGCATGTATGCATGTACGCATGT
1 ATGCATGTATGCATGTACGCATGT
* * *
621762 ACGCATATATGCATGTACGTATGT
1 ATGCATGTATGCATGTACGCATGT
* * *
621786 ATGCATGTATGCATGCATGGATGT
1 ATGCATGTATGCATGTACGCATGT
*
621810 ATACATGTATGCAT
1 ATGCATGTATGCAT
621824 ATCATATGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 76 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (24 bp):
ATGCATGTATGCATGTACGCATGT
Found at i:621841 original size:2 final size:2
Alignment explanation
Indices: 621834--621889 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
621824 ATCATATGTA
621834 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG -G TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
621875 TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG T
621890 ATTCTCGATC
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:623409 original size:12 final size:13
Alignment explanation
Indices: 623392--623421 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
623382 TTGTTTTGTC
623392 TTTTTG-TCTTTT
1 TTTTTGCTCTTTT
623404 TTTTTGCTCTTTT
1 TTTTTGCTCTTTT
623417 TTTTT
1 TTTTT
623422 ATTTTGTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.83
Consensus pattern (13 bp):
TTTTTGCTCTTTT
Found at i:623416 original size:21 final size:22
Alignment explanation
Indices: 623376--623417 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
623366 TTGTTCTTTC
623376 TCTTTCTTGTTTTGTCTTTTTG
1 TCTTTCTTGTTTTGTCTTTTTG
623398 TCTTT-TT-TTTTGCTCTTTTT
1 TCTTTCTTGTTTTG-TCTTTTT
623418 TTTTATTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 9 0.47
22 5 0.26
ACGTcount: A:0.00, C:0.14, G:0.10, T:0.76
Consensus pattern (22 bp):
TCTTTCTTGTTTTGTCTTTTTG
Found at i:623426 original size:21 final size:20
Alignment explanation
Indices: 623363--623417 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
623353 CTTTATCATC
* *
623363 TTTTTGT-TCTTTCTCTTTCT
1 TTTTTGTCTTTTTGTCTTT-T
623383 TGTTTTGTCTTTTTGTCTTTT
1 T-TTTTGTCTTTTTGTCTTTT
623404 TTTTTGCTCTTTTT
1 TTTTTG-TCTTTTT
623418 TTTTATTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
20 6 0.20
21 15 0.50
22 9 0.30
ACGTcount: A:0.00, C:0.15, G:0.09, T:0.76
Consensus pattern (20 bp):
TTTTTGTCTTTTTGTCTTTT
Found at i:623897 original size:41 final size:41
Alignment explanation
Indices: 623846--623929 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
623836 CTTCAGGAAA
623846 TTGGTGCGAGATGCCCCAAGTTGTGTATTCTGATAGAAATG
1 TTGGTGCGAGATGCCCCAAGTTGTGTATTCTGATAGAAATG
623887 TTGGTGCGAGATGCCCCAAGTTGTGTATTCTGATAGAAATG
1 TTGGTGCGAGATGCCCCAAGTTGTGTATTCTGATAGAAATG
623928 TT
1 TT
623930 CATGCTCAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (41 bp):
TTGGTGCGAGATGCCCCAAGTTGTGTATTCTGATAGAAATG
Found at i:629852 original size:4 final size:4
Alignment explanation
Indices: 629843--630573 Score: 1039
Period size: 4 Copynumber: 186.8 Consensus size: 4
629833 AATAAAAATA
*
629843 TATG TATG TATG TATG TATG TATA TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
629891 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
** *
629939 TATG TATG TATG TATG TATG TATG TATG TACA TATG TATG TATG TATA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
629987 TATG TATG TATA TATG TATG TATA TATG TATG TATG TATG TA-G TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
630034 TATG TATG TATG TA-- TATA TATG TATG TAT- TATG TATG TATA TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
630079 TATA TATG TATG --TG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * *
630125 TATA T-TG TAGG TATG TATG TATG TATG TATA TA-G TA-G TATG TA--
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * *
630168 TATG TATG TATA TATA TGTG TATG TATG TATG TGTG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
630216 TATG TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
630263 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * *
630311 TATG TATG TATG TATG TATG TATG TATAT TCTG TATG TATG TATA TATG
1 TATG TATG TATG TATG TATG TATG TAT-G TATG TATG TATG TATG TATG
*
630360 TATG TATG TATG TATG TA-G TATG TATG CATG TATG TATG --TG TAT-
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
630404 TATG TATG TATG TATG CATG TATG -ATG TATG TATG TATG TATG TCTG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
630451 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * * *
630499 TATG TATG TATG TATG TATG TATA TATA TATA TATT TATA TATG TA-A
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * *
630546 TATA CATG TATTA TATG TATG TATG TAT
1 TATG TATG TA-TG TATG TATG TATG TAT
630574 TCTCGATCTG
Statistics
Matches: 657, Mismatches: 51, Indels: 38
0.88 0.07 0.05
Matches are distributed among these distances:
2 8 0.01
3 27 0.04
4 617 0.94
5 5 0.01
ACGTcount: A:0.27, C:0.01, G:0.22, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:631708 original size:5 final size:5
Alignment explanation
Indices: 631698--631722 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
631688 TATTAATCAT
631698 ATTTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA
631723 TTGAATCGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTTA
Found at i:633825 original size:30 final size:30
Alignment explanation
Indices: 633789--633858 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 30
633779 ATAAATTTCT
*
633789 TGTTTCAAGGGAAACAATCTCAAAGGTTAG
1 TGTTTCAAGAGAAACAATCTCAAAGGTTAG
**
633819 TGTTTCAAGAGAAACTGTCTCAAAGGTTAG
1 TGTTTCAAGAGAAACAATCTCAAAGGTTAG
633849 TGTTTCAAGA
1 TGTTTCAAGA
633859 TAACTGTTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (30 bp):
TGTTTCAAGAGAAACAATCTCAAAGGTTAG
Found at i:633952 original size:31 final size:32
Alignment explanation
Indices: 633881--633957 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 32
633871 GAGAGAAAAC
633881 ATGTTTCAAGGG--AAACAATCTCAAAGATTT
1 ATGTTTCAAGGGAAAAACAATCTCAAAGATTT
* *
633911 -TGTGTCTCAAGGGAAAAACATTTTCAAAG-TTT
1 ATGT-T-TCAAGGGAAAAACAATCTCAAAGATTT
*
633943 ATGTTTCAAGAGAAA
1 ATGTTTCAAGGGAAA
633958 CTGTCTCAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
29 3 0.08
30 1 0.03
31 16 0.41
32 4 0.10
33 15 0.38
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (32 bp):
ATGTTTCAAGGGAAAAACAATCTCAAAGATTT
Found at i:634127 original size:63 final size:63
Alignment explanation
Indices: 633934--634128 Score: 188
Period size: 63 Copynumber: 3.1 Consensus size: 63
633924 AAAAACATTT
*
633934 TCAAAGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTC-AGGGAAATTGT
1 TCAAAGTTTATGTTTC-A-AGAAACTGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGGAAACTGT
633998 C
63 C
* ** *
633999 TCAGAA----ACTGTTTCAAGAGAATCTGTCTCAAGGGAAACAAAATTCATTTCAAGGGGAAC-G
1 TCA-AAGTTTA-TGTTTCAAGA-AA-CTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTG
634059 TTC
62 -TC
* * *
634062 TCAAAGTTTTGTGTTTCAAGAAACTATC-CAAGGGAGATAAAATTTGTTTCAAGGGAAACTGTC
1 TCAAAG-TTTATGTTTCAAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTGTC
634125 TCAA
1 TCAA
634129 GAGAGGCAAA
Statistics
Matches: 106, Mismatches: 12, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
61 3 0.03
62 13 0.12
63 68 0.64
64 5 0.05
65 5 0.05
66 12 0.11
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (63 bp):
TCAAAGTTTATGTTTCAAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAACTGTC
Found at i:634232 original size:37 final size:37
Alignment explanation
Indices: 634073--634405 Score: 353
Period size: 39 Copynumber: 9.0 Consensus size: 37
634063 CAAAGTTTTG
*
634073 TGTTTCAA--GAAACTATC-CAAGGGAGATAAAAT-T
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCT
* * **
634106 TGTTTCAAGGGAAACTGTCTCAAGAGAGGCAAAAT-T
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCT
* *
634142 TGTTTCAAGGGAAA-TGTCTCAA--GAGAGAAAAT-T
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCT
*
634175 TATTTCAAGGGAAACTATCTCAAGCGAGATAAAATCT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCT
* * *
634212 TGTTTCGAGGAAAACTATCTCAAGCGAGGTAAAATCTTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATC--T
* * *
634251 TGTTTCGAGGAAAACTACCTCAAGCGAGATAAAATCTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATC-T
* *
634289 ATGTTTAAAGGGAAACTACCTCAAGCGAGATAAAATCTTT
1 -TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATC--T
*
634329 TGTTTCAAGGGAAACTACCTCAAGCGAGAT-AAATCTT
1 TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATC-T
*
634366 CTGTTTCAAGGGAAACTATCTCAAGCGAGACACAAATCT
1 -TGTTTCAAGGGAAACTATCTCAAGCGAGATA-AAATCT
634405 T
1 T
634406 CTGTAAAACA
Statistics
Matches: 265, Mismatches: 21, Indels: 23
0.86 0.07 0.07
Matches are distributed among these distances:
33 30 0.11
34 7 0.03
35 16 0.06
36 36 0.14
37 35 0.13
38 36 0.14
39 98 0.37
40 7 0.03
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.27
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATCT
Found at i:645399 original size:14 final size:15
Alignment explanation
Indices: 645371--645400 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
645361 ATTGCACTCA
645371 GACAGTTCAGTACCC
1 GACAGTTCAGTACCC
645386 GACAGTTC-GTACCC
1 GACAGTTCAGTACCC
645400 G
1 G
645401 CTACCCACAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.20
Consensus pattern (15 bp):
GACAGTTCAGTACCC
Found at i:654859 original size:91 final size:88
Alignment explanation
Indices: 654704--655138 Score: 557
Period size: 91 Copynumber: 4.9 Consensus size: 88
654694 GCTGATCAAC
* * *
654704 ATTTCCAGTGAAGAGTTCATAATAAGAAGAACTCATCCAACAAGGGAGAAGAAGTTCATAATGAG
1 ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAAC-AGGGAGAAGAAGTTCATAATGAG
654769 AAGAACTTGTTCAACCTTAGCTCAAG
65 AAGAACTTGTTCAACCTT-GCTC-AG
*
654795 ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTACATAATGAG
1 ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAAC-AGGGAGAAGAAGTTCATAATGAG
*
654860 AAGAACTTGTTCAACCTCGGCTCAG
65 AAGAACTTGTTCAACCT-TGCTCAG
* *
654885 CATTTTCAGCGGAGAGTTCATAATGAGAAGGACTCATCCAACAGGGGAGAAGAAGTTCATAATGA
1 -ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAACA-GGGAGAAGAAGTTCATAATGA
*
654950 GAAGAGCTTGTTCAACCTTGACTCAG
64 GAAGAACTTGTTCAACCTTG-CTCAG
* * *
654976 CATTTCCAGCGGAGAGGTAATAATGAGAAGAACTCATCCAACAGGGGAGAAAAAGTTCATAATGA
1 -ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAACA-GGGAGAAGAAGTTCATAATGA
*
655041 GAAGAATTTGTTCAACC-T--T-AG
64 GAAGAACTTGTTCAACCTTGCTCAG
* * * *
655062 A--T-CA---GAGGGTTCATAATGAGAAGAACTCGTTCAACGAGGGAGAAGAAGTTCATAATGAT
1 ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAAC-AGGGAGAAGAAGTTCATAATGAG
655121 AAGAACTTGTTCAACCTT
65 AAGAACTTGTTCAACCTT
655139 AGATCTATAT
Statistics
Matches: 312, Mismatches: 26, Indels: 23
0.86 0.07 0.06
Matches are distributed among these distances:
79 61 0.20
80 2 0.01
82 2 0.01
83 1 0.00
85 1 0.00
86 2 0.01
87 1 0.00
90 5 0.02
91 237 0.76
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (88 bp):
ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAACAGGGAGAAGAAGTTCATAATGAGA
AGAACTTGTTCAACCTTGCTCAG
Found at i:655082 original size:40 final size:39
Alignment explanation
Indices: 655028--655143 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 39
655018 AGGGGAGAAA
*
655028 AAGTTCATAATGAGAAGAATTTGTTCAACCTTAGATCAG
1 AAGTTCATAATGAGAAGAACTTGTTCAACCTTAGATCAG
* * **** **
655067 AGGGTTCATAATGAGAAGAACTCGTTCAACGAGGGAGAAG
1 A-AGTTCATAATGAGAAGAACTTGTTCAACCTTAGATCAG
*
655107 AAGTTCATAATGATAAGAACTTGTTCAACCTTAGATC
1 AAGTTCATAATGAGAAGAACTTGTTCAACCTTAGATC
655144 TATATTTCCA
Statistics
Matches: 58, Mismatches: 18, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
39 28 0.48
40 30 0.52
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (39 bp):
AAGTTCATAATGAGAAGAACTTGTTCAACCTTAGATCAG
Found at i:655131 original size:79 final size:79
Alignment explanation
Indices: 654995--655143 Score: 237
Period size: 79 Copynumber: 1.9 Consensus size: 79
654985 CGGAGAGGTA
*
654995 ATAATGAGAAGAACTCATCCAACAGGGGAGAAAAAGTTCATAATGAGAAGAATTTGTTCAACCTT
1 ATAATGAGAAGAACTCATCCAACAGGGGAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTT
655060 AGATCAGAGGGTTC
66 AGATCAGAGGGTTC
* * * *
655074 ATAATGAGAAGAACTCGTTCAAC-GAGGGAGAAGAAGTTCATAATGATAAGAACTTGTTCAACCT
1 ATAATGAGAAGAACTCATCCAACAG-GGGAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCT
655138 TAGATC
65 TAGATC
655144 TATATTTCCA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 1 0.02
79 63 0.98
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.23
Consensus pattern (79 bp):
ATAATGAGAAGAACTCATCCAACAGGGGAGAAAAAGTTCATAATGAGAAGAACTTGTTCAACCTT
AGATCAGAGGGTTC
Found at i:656292 original size:24 final size:24
Alignment explanation
Indices: 656264--656319 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
656254 GGAGAGGCAG
656264 CAGGGAGATGAGGGTTGAATAAAA
1 CAGGGAGATGAGGGTTGAATAAAA
656288 CAGGGAGATGAGGGTTGAATAAAA
1 CAGGGAGATGAGGGTTGAATAAAA
656312 CAGGGAGA
1 CAGGGAGA
656320 AACGCAGCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.41, C:0.05, G:0.39, T:0.14
Consensus pattern (24 bp):
CAGGGAGATGAGGGTTGAATAAAA
Found at i:656851 original size:22 final size:22
Alignment explanation
Indices: 656784--656851 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 22
656774 TCTTTTATTA
656784 TTTGTAATTTTATTTTTATTCAATT
1 TTTGTAATTTTA--TTTATT-AATT
* *
656809 TTAGT-A-TTTATTTATTTATT
1 TTTGTAATTTTATTTATTAATT
*
656829 TTTGTAATTTTATTTCTTAATT
1 TTTGTAATTTTATTTATTAATT
656851 T
1 T
656852 GGATTAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
20 7 0.19
21 7 0.19
22 13 0.36
23 4 0.11
24 1 0.03
25 4 0.11
ACGTcount: A:0.24, C:0.03, G:0.04, T:0.69
Consensus pattern (22 bp):
TTTGTAATTTTATTTATTAATT
Found at i:657957 original size:17 final size:17
Alignment explanation
Indices: 657935--657973 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
657925 TGAATCAAAT
657935 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
657952 TAATTAGATATTATTTA
1 TAATTAGATATTATTTA
657969 -AATTA
1 TAATTA
657974 ATTGTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TAATTAGATATTATTTA
Found at i:660174 original size:14 final size:15
Alignment explanation
Indices: 660146--660174 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
660136 AGTGCACTCA
660146 AACAGTTCAGTACCC
1 AACAGTTCAGTACCC
660161 AACAGTTC-GTACCC
1 AACAGTTCAGTACCC
660175 GCTACCCACG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.31, C:0.34, G:0.14, T:0.21
Consensus pattern (15 bp):
AACAGTTCAGTACCC
Found at i:669531 original size:91 final size:90
Alignment explanation
Indices: 669376--669826 Score: 631
Period size: 91 Copynumber: 5.1 Consensus size: 90
669366 GTTGATCAAC
* *
669376 ATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACAAGGGAGAAGAAGTTCATAATGAG
1 ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAACAGGGGAGAAGAAGTTCATAATGAG
669441 AAGAACTTGTTCAACCTTAGCTCAAG
66 AAGAACTTGTTCAACCTTAGCTC-AG
* *
669467 ATTTCCAGCGGAGAGTTCATAATGAGAATAACTCATCCAACGGGGGAGAAGAAGTTCATAATGAG
1 ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAACAGGGGAGAAGAAGTTCATAATGAG
*
669532 AAGAACTTGTTCAACCTTGGCTCAG
66 AAGAACTTGTTCAACCTTAGCTCAG
* * *
669557 CATTTCCAGCAGAGAGTTCATAATGAGATGAACTCATCCAACAGGGGAGAAGAAGTTCATAATCA
1 -ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAACAGGGGAGAAGAAGTTCATAATGA
669622 GAAGAACTTGTTCAACCTT-GACTCAG
65 GAAGAACTTGTTCAACCTTAG-CTCAG
669648 CATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAACAGGGGAGAAGAAGTTCATAATGA
1 -ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAACAGGGGAGAAGAAGTTCATAATGA
*
669713 GAAGAATTTGTTCAACCTTAGCTCAG
65 GAAGAACTTGTTCAACCTTAGCTCAG
* *
669739 ------A---G-G-GTTCATAATGAGAAGAACTCGTTCAAC-GAGGGAGAAGAAGTTCATAATGA
1 ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAACAG-GGGAGAAGAAGTTCATAATGA
* * *
669792 GAATAACTTGTTCAACCTTAGATCTAC
65 GAAGAACTTGTTCAACCTTAGCTC-AG
669819 ATTTCCAG
1 ATTTCCAG
669827 AAGAACCCGC
Statistics
Matches: 328, Mismatches: 20, Indels: 28
0.87 0.05 0.07
Matches are distributed among these distances:
78 1 0.00
79 67 0.20
80 2 0.01
81 1 0.00
84 1 0.00
86 1 0.00
90 3 0.01
91 251 0.77
92 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (90 bp):
ATTTCCAGCGGAGAGTTCATAATGAGAAGAACTCATCCAACAGGGGAGAAGAAGTTCATAATGAG
AAGAACTTGTTCAACCTTAGCTCAG
Found at i:669705 original size:39 final size:39
Alignment explanation
Indices: 669662--669807 Score: 145
Period size: 39 Copynumber: 3.7 Consensus size: 39
669652 TCCAGCGGAG
* *
669662 AGTTCATAATGAGAAGAACTCATCCAACAGGGGAGAAGA
1 AGTTCATAATGAGAAGAACTCGTTCAACAGGGGAGAAGA
* * ***
669701 AGTTCATAATGAGAAGAATTTGTTCAACCTTAGCTCAG-AG-
1 AGTTCATAATGAGAAGAACTCGTTCAA-C--AGGGGAGAAGA
*
669741 GGTTCATAATGAGAAGAACTCGTTCAAC-GAGGGAGAAGA
1 AGTTCATAATGAGAAGAACTCGTTCAACAG-GGGAGAAGA
* *
669780 AGTTCATAATGAGAATAACTTGTTCAAC
1 AGTTCATAATGAGAAGAACTCGTTCAAC
669808 CTTAGATCTA
Statistics
Matches: 85, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
36 1 0.01
37 2 0.02
38 2 0.02
39 49 0.58
40 25 0.29
41 2 0.02
42 4 0.05
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.23
Consensus pattern (39 bp):
AGTTCATAATGAGAAGAACTCGTTCAACAGGGGAGAAGA
Found at i:669757 original size:79 final size:79
Alignment explanation
Indices: 669663--669812 Score: 248
Period size: 79 Copynumber: 1.9 Consensus size: 79
669653 CCAGCGGAGA
*
669663 GTTCATAATGAGAAGAACTCATCCAAC-AGGGGAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
1 GTTCATAATGAGAAGAACTCATCCAACGA-GGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
669727 ACCTTAGCTCAGAGG
65 ACCTTAGCTCAGAGG
* * *
669742 GTTCATAATGAGAAGAACTCGTTCAACGAGGGAGAAGAAGTTCATAATGAGAATAACTTGTTCAA
1 GTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
669807 CCTTAG
66 CCTTAG
669813 ATCTACATTT
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
79 65 0.98
80 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (79 bp):
GTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
CCTTAGCTCAGAGG
Found at i:671418 original size:22 final size:22
Alignment explanation
Indices: 671351--671418 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 22
671341 TCTTTTATTA
671351 TTTGTAATTTTATTTTTATTCAATT
1 TTTGTAATTTTA--TTTATT-AATT
* *
671376 TTAGT-A-TTTATTTATTTATT
1 TTTGTAATTTTATTTATTAATT
*
671396 TTTGTAATTTTATTTCTTAATT
1 TTTGTAATTTTATTTATTAATT
671418 T
1 T
671419 GGATTAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
20 7 0.19
21 7 0.19
22 13 0.36
23 4 0.11
24 1 0.03
25 4 0.11
ACGTcount: A:0.24, C:0.03, G:0.04, T:0.69
Consensus pattern (22 bp):
TTTGTAATTTTATTTATTAATT
Found at i:672685 original size:189 final size:193
Alignment explanation
Indices: 672365--672748 Score: 722
Period size: 189 Copynumber: 2.0 Consensus size: 193
672355 GGGGGTGCTA
672365 ATCCTTCCCCACACGTAACTGACACCCGAACCTGATTTTTGGATTTTTGTAGACCCTAAAACTCA
1 ATCCTTCCCCACACGTAACTGACACCCGAACCTGATTTTTGGATTTTTGTAGACCCTAAAACTCA
672430 GTGTTTTATTAAAATAAAATGTTTTATTAAAATCACCCAATTTTTACGGTGTTCCAATCTCACCT
66 GTGTTTTATTAAAATAAAATGTTTTATTAAAATCACCCAATTTTTACGGTGTTCCAATCTCACCT
672495 TAAATGA-TGGT-GACTCCTCACA-TTTGAAACAATTCTAAAATTGAAAA-CCCCGAGTCGGT
131 TAAATGATTGGTGGACTCCTCACATTTTGAAACAATTCTAAAATTGAAAACCCCCGAGTCGGT
672554 ATCCTTCCCCACACGTAACTGACACCCGAACCTGATTTTTGGATTTTTGTAGACCCTAAAACTCA
1 ATCCTTCCCCACACGTAACTGACACCCGAACCTGATTTTTGGATTTTTGTAGACCCTAAAACTCA
672619 GTGTTTTATTAAAATAAAATGTTTTATTAAAATCACCCAATTTTTACGGTGTTCCAATCTCACCT
66 GTGTTTTATTAAAATAAAATGTTTTATTAAAATCACCCAATTTTTACGGTGTTCCAATCTCACCT
672684 TAAATGATTGGTGGCGACTCCTCACATTTTGAAACAATTCTAAAATTGAAAACCCCCGAGTCGGT
131 TAAATGATTGGT-G-GACTCCTCACATTTTGAAACAATTCTAAAATTGAAAACCCCCGAGTCGGT
672749 GTCGGTCTTT
Statistics
Matches: 189, Mismatches: 0, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
189 137 0.72
190 4 0.02
193 11 0.06
194 25 0.13
195 12 0.06
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (193 bp):
ATCCTTCCCCACACGTAACTGACACCCGAACCTGATTTTTGGATTTTTGTAGACCCTAAAACTCA
GTGTTTTATTAAAATAAAATGTTTTATTAAAATCACCCAATTTTTACGGTGTTCCAATCTCACCT
TAAATGATTGGTGGACTCCTCACATTTTGAAACAATTCTAAAATTGAAAACCCCCGAGTCGGT
Found at i:673675 original size:135 final size:135
Alignment explanation
Indices: 673312--673677 Score: 464
Period size: 135 Copynumber: 2.7 Consensus size: 135
673302 ACGACATTGC
* ** * * * ** * *
673312 TCATACGCGATGAAGA-GGTCTGGTCGTCTAAGGGTGACACGGATTTTACATGATGAGGATATCT
1 TCATACGCGATGAGGACGG-CTGGTTATCTAGGGGTGACACAGCTCATACGTGATGAGGAGATCT
* * * * * *
673376 AGTCGGGGGTTGACACTACTCATACGTGATGAAGAGTTTTTGGCCATCTCTAGGAAGGGTGATAA
65 GGTCGGGGGATGACACTGCTCATACGTGATGAAAAGTTCTTGGCCATCTCTAGAAAGGGTGATAA
673441 CACGGT
130 CACGGT
* * * * *
673447 TCTTACGCGATGAGGACGGCTGGTTATCTAGGGGTGACACAACTCCTATGTGATGAGGAGGTCTG
1 TCATACGCGATGAGGACGGCTGGTTATCTAGGGGTGACACAGCTCATACGTGATGAGGAGATCTG
* * *
673512 GTCGGGGGATGACACTGCTCATATGTGATGAAAAGTTCTTGGTCATCTTTAGAAAGGGTGATAAC
66 GTCGGGGGATGACACTGCTCATACGTGATGAAAAGTTCTTGGCCATCTCTAGAAAGGGTGATAAC
673577 ACGGT
131 ACGGT
*
673582 TCATACGCGATGAGGACGGCTGGTTATCTAGGGGTGACACAGCTCATACGTGATGAAGAGATCTG
1 TCATACGCGATGAGGACGGCTGGTTATCTAGGGGTGACACAGCTCATACGTGATGAGGAGATCTG
* * *
673647 GTCGGGGGATGACACGGTTCTTACGTGATGA
66 GTCGGGGGATGACACTGCTCATACGTGATGA
673678 GGATGGCTGA
Statistics
Matches: 197, Mismatches: 33, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
135 195 0.99
136 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.27
Consensus pattern (135 bp):
TCATACGCGATGAGGACGGCTGGTTATCTAGGGGTGACACAGCTCATACGTGATGAGGAGATCTG
GTCGGGGGATGACACTGCTCATACGTGATGAAAAGTTCTTGGCCATCTCTAGAAAGGGTGATAAC
ACGGT
Found at i:674298 original size:36 final size:34
Alignment explanation
Indices: 674196--674304 Score: 114
Period size: 36 Copynumber: 3.1 Consensus size: 34
674186 ATAATTTGGA
* *
674196 AAATTATCTCAAGTGAGATAACATTTTTTTTAGAG
1 AAATTATCTCAAGCGAGACAA-ATTTTTTTTAGAG
*
674231 AAATTATCTCTAA-CGAGACAAAAATTATTTTTAGAG
1 AAATTATCTC-AAGCGAGAC--AAATTTTTTTTAGAG
*
674267 AAATTGTCTCAAGCGAGACAAAGTTTGTTTTT-GAG
1 AAATTATCTCAAGCGAGACAAA-TTT-TTTTTAGAG
674302 AAA
1 AAA
674305 ACGATCTCAA
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
34 3 0.05
35 24 0.38
36 34 0.54
37 2 0.03
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (34 bp):
AAATTATCTCAAGCGAGACAAATTTTTTTTAGAG
Found at i:674497 original size:107 final size:107
Alignment explanation
Indices: 674308--674517 Score: 266
Period size: 107 Copynumber: 2.0 Consensus size: 107
674298 TGAGAAAACG
* *
674308 ATCTCAAGTGAGATCAACTTTGTTTAATGTGAAACAAATTCGAGATTTGTATTCTCAAAGGAAAA
1 ATCTCAAGTGAGATCAACTTTGTTTAATGTGAAACAAATTCGAAATTTGTATTATCAAAGGAAAA
*
674373 AATGTCTCAAACGAGACGAAATTTATTTTGAA-AAAAATAACA
66 AATGTCTCAAACAAGACGAAATTTATTTT-AAGAAAAATAACA
* * *
674415 ATCTCAAGTGAGATTAATTTTTTTTTCAA-GT-AAATCAAATTCGAAATTTGTA-TATCAAAGGA
1 ATCTCAAGTGAGATCAA-CTTTGTTT-AATGTGAAA-CAAATTCGAAATTTGTATTATCAAAGGA
* * * *
674477 AAAAATGTCTCCAGCAAGACGAAGTTTGTTTTAAGAAAAAT
63 AAAAATGTCTCAAACAAGACGAAATTTATTTTAAGAAAAAT
674518 TATCTTAAAT
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
106 2 0.02
107 61 0.69
108 24 0.27
109 2 0.02
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (107 bp):
ATCTCAAGTGAGATCAACTTTGTTTAATGTGAAACAAATTCGAAATTTGTATTATCAAAGGAAAA
AATGTCTCAAACAAGACGAAATTTATTTTAAGAAAAATAACA
Found at i:674673 original size:155 final size:157
Alignment explanation
Indices: 674429--674734 Score: 345
Period size: 155 Copynumber: 2.0 Consensus size: 157
674419 CAAGTGAGAT
*
674429 TAATTTTTTTTTCAAGTAAATCAAATTCGAAATTTGTATATCAAAGGAAAAAATGTCTCCAGCAA
1 TAATTTTTTTTTCAAGTAAATCAAATTCGAAATTTGTATATCAAAGGAAAAAATGTCTCAAGCAA
* ** * *
674494 GACGAAGTTTGTTTTAAGAAAAATTATCTTAAATG-AGGCAAAATTTA-TTTTAAAATTCTTAAA
66 GACGAAATTTACTTTAAGAAAAATTATC-TAAA-GCAGACAAAATTTATTTTTAAAATTCTCAAA
* *
674557 ATTTATGG-GAACTGTCTCAAGCAAGAAA
129 ATTTATGGAAAAATGTCTCAAGCAAGAAA
* * * * *
674585 TAATTTTTTTTTCAAGTACAA-CAAATT-TAAATTTGTATCTTAGA-GAAATAAATGTCTCAATC
1 TAATTTTTTTTTCAAGTA-AATCAAATTCGAAATTTGTATATCAAAGGAAA-AAATGTCTCAAGC
* * * * * * *
674647 GAGATGAAATTTACTTTGATAGAAATTGTCTCAAGCAGACAAAATTTATTTTTAAAATTCTCAAA
64 AAGACGAAATTTACTTTAAGAAAAATTATCTAAAGCAGACAAAATTTATTTTTAAAATTCTCAAA
*
674712 ATTTGTGGAAAAATGTCTCAAGC
129 ATTTATGGAAAAATGTCTCAAGC
674735 GAGATAGAAT
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
153 1 0.01
154 18 0.15
155 67 0.54
156 36 0.29
157 2 0.02
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.36
Consensus pattern (157 bp):
TAATTTTTTTTTCAAGTAAATCAAATTCGAAATTTGTATATCAAAGGAAAAAATGTCTCAAGCAA
GACGAAATTTACTTTAAGAAAAATTATCTAAAGCAGACAAAATTTATTTTTAAAATTCTCAAAAT
TTATGGAAAAATGTCTCAAGCAAGAAA
Found at i:675057 original size:4 final size:4
Alignment explanation
Indices: 675048--675170 Score: 219
Period size: 4 Copynumber: 30.8 Consensus size: 4
675038 AGATGCAAAT
675048 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
675096 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * *
675144 TGTA TGTT TGTG TGTG TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGT
675171 TTGTGTGTGT
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 116 1.00
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:675181 original size:6 final size:6
Alignment explanation
Indices: 675152--675903 Score: 694
Period size: 6 Copynumber: 126.5 Consensus size: 6
675142 TATGTATGTT
* * *
675152 TGTGTG TGTGTA TGTATG TTTGTG TGTGTG TGT-TG TGTGTG TGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
675199 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TG-GTG TGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * * *
675246 TGTGTG T-TGTG TGTGCG TGTGCG TGTGTG TGTGTG CGTGTG CGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * *
675293 TGCGTG TGTGCG TGTGTG CGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * * * * * *
675341 TGTGCG TGTGCG TGTGCG TGTGCG TGTGCG TGTGTG CGTGTG TGCGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * * * * *
675389 TGTGCG TGTGTG CGTGTG TGCGTG TGTGCG TGTGTG CGTGTG TGCGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * * *
675437 TGTGCG TGTGTG CGTGTG TGCTGTG TGCGTG TGTGCG TGTGTG -GTGTG
1 TGTGTG TGTGTG TGTGTG TG-TGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * * * * * *
675485 CGTGTG TGCGTG TGTGCG TGTGTG CGTGTG CGTGTG -GCG-G TGTGCG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * * * *
675531 TGTGCG TGTGTG CGTGTG TGCGTG TGTGCT- TGTGCG TGT-TG CGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTG-TG TGTGTG TGTGTG TGTGTG
* * * * * * * * * *
675578 TGCGTG -GCGTG TGCGCG TGTGCG TGTGCG CGTGTG CGCGTG TGTGCG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * * * * * * * * *
675625 TGTGTG CGTGTG TGCGTG TGTGCG TGTGCG CGTGTG CGCGTG CGCGCG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * * * * * * * * * * *
675673 TGTGCG CGTGCG CGCGTG TGCGTG TGCGCG TGCGTG CGTGTG CGCGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* ** * * * *
675721 TGTGCG TACGTG CGTGTG TGTGTG CGTGTG TGTGTG CGTGCG TGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
* * *
675769 CGTGCG TGCGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
675817 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG
675865 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGT
1 TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGTGTG TGT
675904 ATTCTCGATC
Statistics
Matches: 624, Mismatches: 111, Indels: 22
0.82 0.15 0.03
Matches are distributed among these distances:
4 1 0.00
5 32 0.05
6 584 0.94
7 7 0.01
ACGTcount: A:0.00, C:0.11, G:0.49, T:0.40
Consensus pattern (6 bp):
TGTGTG
Found at i:675196 original size:8 final size:8
Alignment explanation
Indices: 675152--675903 Score: 694
Period size: 8 Copynumber: 94.9 Consensus size: 8
675142 TATGTATGTT
675152 TGTGTGTG
1 TGTGTGTG
* *
675160 TGTATGTA
1 TGTGTGTG
*
675168 TGTTTGTG
1 TGTGTGTG
675176 TGTGTGTG
1 TGTGTGTG
675184 T-TGTGTG
1 TGTGTGTG
675191 TGTGTGTG
1 TGTGTGTG
675199 TGTGTGTG
1 TGTGTGTG
675207 TGTGTGTG
1 TGTGTGTG
675215 TGTGTGTG
1 TGTGTGTG
675223 TGTGTGTG
1 TGTGTGTG
675231 TGTGTG-G
1 TGTGTGTG
675238 TGTGTGTG
1 TGTGTGTG
675246 TGTGTGT-
1 TGTGTGTG
675253 TGTGTGTG
1 TGTGTGTG
* *
675261 CGTGTGCG
1 TGTGTGTG
675269 TGTGTGTG
1 TGTGTGTG
*
675277 TGTGCGTG
1 TGTGTGTG
*
675285 TGCGTGTG
1 TGTGTGTG
*
675293 TGCGTGTG
1 TGTGTGTG
*
675301 TGCGTGTG
1 TGTGTGTG
*
675309 TGCGTGTG
1 TGTGTGTG
675317 TGTGTGTG
1 TGTGTGTG
675325 TGTGTGTG
1 TGTGTGTG
675333 TGTGTGTG
1 TGTGTGTG
*
675341 TGTGCGTG
1 TGTGTGTG
*
675349 TGCGTGTG
1 TGTGTGTG
* *
675357 CGTGTGCG
1 TGTGTGTG
*
675365 TGTGCGTG
1 TGTGTGTG
*
675373 TGTGCGTG
1 TGTGTGTG
*
675381 TGTGCGTG
1 TGTGTGTG
*
675389 TGTGCGTG
1 TGTGTGTG
*
675397 TGTGCGTG
1 TGTGTGTG
*
675405 TGTGCGTG
1 TGTGTGTG
*
675413 TGTGCGTG
1 TGTGTGTG
*
675421 TGTGCGTG
1 TGTGTGTG
*
675429 TGTGCGTG
1 TGTGTGTG
*
675437 TGTGCGTG
1 TGTGTGTG
*
675445 TGTGCGTG
1 TGTGTGTG
675453 TGTGCTGTG
1 TGTG-TGTG
*
675462 TGCGTGTG
1 TGTGTGTG
*
675470 TGCGTGTG
1 TGTGTGTG
675478 TG-GTGTG
1 TGTGTGTG
*
675485 CGTGTGTG
1 TGTGTGTG
*
675493 CGTGTGTG
1 TGTGTGTG
*
675501 CGTGTGTG
1 TGTGTGTG
* *
675509 CGTGTGCG
1 TGTGTGTG
*
675517 TGTG-GCG
1 TGTGTGTG
*
675524 -GTGTGCG
1 TGTGTGTG
*
675531 TGTGCGTG
1 TGTGTGTG
*
675539 TGTGCGTG
1 TGTGTGTG
*
675547 TGTGCGTG
1 TGTGTGTG
675555 TGTGCT-TG
1 TGTG-TGTG
*
675563 TGCGTGT-
1 TGTGTGTG
*
675570 TGCGTGTG
1 TGTGTGTG
*
675578 TGCGTG-G
1 TGTGTGTG
* *
675585 CGTGTGCG
1 TGTGTGTG
* *
675593 CGTGTGCG
1 TGTGTGTG
* *
675601 TGTGCGCG
1 TGTGTGTG
* *
675609 TGTGCGCG
1 TGTGTGTG
*
675617 TGTGTGCG
1 TGTGTGTG
*
675625 TGTGTGCG
1 TGTGTGTG
*
675633 TGTGTGCG
1 TGTGTGTG
*
675641 TGTGTGCG
1 TGTGTGTG
* *
675649 TGTGCGCG
1 TGTGTGTG
* *
675657 TGTGCGCG
1 TGTGTGTG
* * *
675665 TGCGCGCG
1 TGTGTGTG
* *
675673 TGTGCGCG
1 TGTGTGTG
* * *
675681 TGCGCGCG
1 TGTGTGTG
*
675689 TGTGCGTG
1 TGTGTGTG
* *
675697 TGCGCGTG
1 TGTGTGTG
* *
675705 CGTGCGTG
1 TGTGTGTG
* *
675713 TGCGCGTG
1 TGTGTGTG
* *
675721 TGTGCGTA
1 TGTGTGTG
* *
675729 CGTGCGTG
1 TGTGTGTG
675737 TGTGTGTG
1 TGTGTGTG
*
675745 CGTGTGTG
1 TGTGTGTG
*
675753 TGTGCGTG
1 TGTGTGTG
*
675761 CGTGTGTG
1 TGTGTGTG
* *
675769 CGTGCGTG
1 TGTGTGTG
*
675777 CGTGTGTG
1 TGTGTGTG
675785 TGTGTGTG
1 TGTGTGTG
675793 TGTGTGTG
1 TGTGTGTG
675801 TGTGTGTG
1 TGTGTGTG
675809 TGTGTGTG
1 TGTGTGTG
675817 TGTGTGTG
1 TGTGTGTG
675825 TGTGTGTG
1 TGTGTGTG
675833 TGTGTGTG
1 TGTGTGTG
675841 TGTGTGTG
1 TGTGTGTG
675849 TGTGTGTG
1 TGTGTGTG
675857 TGTGTGTG
1 TGTGTGTG
675865 TGTGTGTG
1 TGTGTGTG
675873 TGTGTGTG
1 TGTGTGTG
675881 TGTGTGTG
1 TGTGTGTG
675889 TGTGTGTG
1 TGTGTGTG
675897 TGTGTGT
1 TGTGTGT
675904 ATTCTCGATC
Statistics
Matches: 672, Mismatches: 61, Indels: 22
0.89 0.08 0.03
Matches are distributed among these distances:
6 3 0.00
7 46 0.07
8 617 0.92
9 6 0.01
ACGTcount: A:0.00, C:0.11, G:0.49, T:0.40
Consensus pattern (8 bp):
TGTGTGTG
Found at i:677277 original size:19 final size:19
Alignment explanation
Indices: 677230--677283 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
677220 CTTGCTCTTT
677230 TCTTTGTTTTGTCTTTTTTC
1 TCTTTGTTTT-TCTTTTTTC
* *
677250 T-TTTCTTTTT-TTTTTGC
1 TCTTTGTTTTTCTTTTTTC
*
677267 TCTTTGTTTTTGTTTTT
1 TCTTTGTTTTTCTTTTT
677284 ATGTTCTCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 7 0.24
18 9 0.31
19 12 0.41
20 1 0.03
ACGTcount: A:0.00, C:0.11, G:0.09, T:0.80
Consensus pattern (19 bp):
TCTTTGTTTTTCTTTTTTC
Found at i:681959 original size:11 final size:11
Alignment explanation
Indices: 681930--681962 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
681920 ATAAATAAAG
*
681930 AAATACAATAT
1 AAATAAAATAT
681941 AAAT-AAATAT
1 AAATAAAATAT
681951 AAATAAAATAT
1 AAATAAAATAT
681962 A
1 A
681963 TGAAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATAAAATAT
Found at i:683002 original size:16 final size:16
Alignment explanation
Indices: 682977--683012 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
682967 AGGTACCCAA
682977 CCTCCCTCAAAACGTT
1 CCTCCCTCAAAACGTT
*
682993 CCTCCTTCAAAACGTT
1 CCTCCCTCAAAACGTT
683009 CCTC
1 CCTC
683013 ATTTTACCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.44, G:0.06, T:0.28
Consensus pattern (16 bp):
CCTCCCTCAAAACGTT
Found at i:683757 original size:3 final size:3
Alignment explanation
Indices: 683749--683800 Score: 79
Period size: 3 Copynumber: 17.7 Consensus size: 3
683739 TTTATATATC
* *
683749 AAT AAT AAT AAT AAA AAT AAT AGT AAT AAT AAT AAT AAT -AT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
683796 AAT AA
1 AAT AA
683801 ATGATCCGGA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:685754 original size:142 final size:141
Alignment explanation
Indices: 685490--685769 Score: 429
Period size: 142 Copynumber: 2.0 Consensus size: 141
685480 TTTATTCATT
* * *
685490 TCAATAAAAATATCAATTTAATTTATGACGGAACAATGATTTCTCCGGAAATTTTGTTCAACTTT
1 TCAATAAAAATATCAATTTAATTTATAACGGAACAATAATTCCTCCGGAAATTTTGTTCAACTTT
* *
685555 AATTAAAATATATCAATTTAATTTGTGATGGAATAGTCATTCCATAGGAAATAAAAAAATAACTA
66 AATTAAAATATACCAATTTAATTTGTGATGGAATAGTCATTCCATAGAAAATAAAAAAATAACTA
685620 CATTTAATTTA
131 CATTTAATTTA
*
685631 TCAATAAAAAATATCAATTTAATTTATAACGGGACAATAATTCCGT-CGGAAATTTTGTTCAACT
1 TCAAT-AAAAATATCAATTTAATTTATAACGGAACAATAATTCC-TCCGGAAATTTTGTTCAACT
* * * *
685695 TTAATTAAAATATACCCATTTAATTTGTGATTGAATAGTCATT-CATTCGAAAATTAAAAAATAA
64 TTAATTAAAATATACCAATTTAATTTGTGATGGAATAGTCATTCCA-TAGAAAATAAAAAAATAA
685759 CTACATTTAAT
128 CTACATTTAAT
685770 ATACAACTAT
Statistics
Matches: 126, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
141 7 0.06
142 118 0.94
143 1 0.01
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.37
Consensus pattern (141 bp):
TCAATAAAAATATCAATTTAATTTATAACGGAACAATAATTCCTCCGGAAATTTTGTTCAACTTT
AATTAAAATATACCAATTTAATTTGTGATGGAATAGTCATTCCATAGAAAATAAAAAAATAACTA
CATTTAATTTA
Found at i:686981 original size:14 final size:16
Alignment explanation
Indices: 686964--686996 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
686954 ATTTAAAAAA
686964 TAAAA-TTTATT-ATT
1 TAAAATTTTATTAATT
686978 TAAAATTTTATTAATT
1 TAAAATTTTATTAATT
686994 TAA
1 TAA
686997 GTATCTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 6 0.35
16 6 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TAAAATTTTATTAATT
Found at i:687891 original size:89 final size:89
Alignment explanation
Indices: 687740--687917 Score: 356
Period size: 89 Copynumber: 2.0 Consensus size: 89
687730 TTTGTTGTTT
687740 TGAATTTACATTCGATAATATTTTATTACTTTATTGATTGCTCCATGTATGTATTTGTATATTTT
1 TGAATTTACATTCGATAATATTTTATTACTTTATTGATTGCTCCATGTATGTATTTGTATATTTT
687805 TGGTGTCTTTATTTATTTAGCAAC
66 TGGTGTCTTTATTTATTTAGCAAC
687829 TGAATTTACATTCGATAATATTTTATTACTTTATTGATTGCTCCATGTATGTATTTGTATATTTT
1 TGAATTTACATTCGATAATATTTTATTACTTTATTGATTGCTCCATGTATGTATTTGTATATTTT
687894 TGGTGTCTTTATTTATTTAGCAAC
66 TGGTGTCTTTATTTATTTAGCAAC
687918 CTATTAAGTG
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.25, C:0.10, G:0.12, T:0.53
Consensus pattern (89 bp):
TGAATTTACATTCGATAATATTTTATTACTTTATTGATTGCTCCATGTATGTATTTGTATATTTT
TGGTGTCTTTATTTATTTAGCAAC
Found at i:689172 original size:31 final size:31
Alignment explanation
Indices: 689134--689194 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
689124 ATATTTTAAA
*
689134 TTTGTGATAGAATATGTGGATCCATCACAAC
1 TTTGTGATAGAATATGTGGACCCATCACAAC
* *
689165 TTTGTGATGGAATATGTGGACCCGTCACAA
1 TTTGTGATAGAATATGTGGACCCATCACAA
689195 ATTTCTGACA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (31 bp):
TTTGTGATAGAATATGTGGACCCATCACAAC
Found at i:690137 original size:2 final size:2
Alignment explanation
Indices: 690130--690158 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
690120 CAAAAACATA
690130 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
690159 TCCAACGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:696900 original size:42 final size:42
Alignment explanation
Indices: 696853--696933 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
696843 TAAATTAAAT
* *
696853 TATTATAAATTACATTAATTATTTATTAAAATAAAAATAATA
1 TATTATAAATTACATGAATTACTTATTAAAATAAAAATAATA
* * * *
696895 TATTATTATTTATATGAATTACTTATTAAAATAATAATA
1 TATTATAAATTACATGAATTACTTATTAAAATAAAAATA
696934 TTACTAAACC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (42 bp):
TATTATAAATTACATGAATTACTTATTAAAATAAAAATAATA
Found at i:697218 original size:30 final size:28
Alignment explanation
Indices: 697169--697239 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 28
697159 AATATAAATT
**
697169 AATAATTAATATTTTTATTAAAATAATACTAA
1 AATAA-TAATATTAATATT-AAAT-ATAC-AA
697201 AATAAT-ATATTAATATTAAATATACAA
1 AATAATAATATTAATATTAAATATACAA
697228 AATAATAATATT
1 AATAATAATATT
697240 TTGAGTGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
27 8 0.22
28 9 0.25
29 4 0.11
30 9 0.25
31 1 0.03
32 5 0.14
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (28 bp):
AATAATAATATTAATATTAAATATACAA
Found at i:699329 original size:16 final size:16
Alignment explanation
Indices: 699308--699343 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
699298 ATTTGCACTA
699308 ATATCTTAAATCAATC
1 ATATCTTAAATCAATC
*
699324 ATATCTTAAATCAATT
1 ATATCTTAAATCAATC
699340 ATAT
1 ATAT
699344 GGACATGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATCTTAAATCAATC
Found at i:700742 original size:12 final size:10
Alignment explanation
Indices: 700713--700753 Score: 64
Period size: 10 Copynumber: 4.1 Consensus size: 10
700703 TTCATCACAC
700713 CAAATTCTCT
1 CAAATTCTCT
700723 CAAATTCTCT
1 CAAATTCTCT
*
700733 CAAATTTTCT
1 CAAATTCTCT
*
700743 CAAATACTCT
1 CAAATTCTCT
700753 C
1 C
700754 TCTGTTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:700832 original size:17 final size:18
Alignment explanation
Indices: 700795--700835 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
700785 AAATTATGTA
*
700795 TTTAATTTATTTAAGTAT
1 TTTACTTTATTTAAGTAT
700813 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGTAT
700830 TTTACT
1 TTTACT
700836 AATATAATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTACTTTATTTAAGTAT
Found at i:702543 original size:18 final size:18
Alignment explanation
Indices: 702512--702569 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
702502 ACAGCAGCCT
702512 CCGCAGCCATTTATGATG
1 CCGCAGCCATTTATGATG
* *
702530 CCGTAGCTATTTATGATG
1 CCGCAGCCATTTATGATG
* *
702548 CTGCAGCCATATATGATG
1 CCGCAGCCATTTATGATG
702566 CCGC
1 CCGC
702570 CATCGCCTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (18 bp):
CCGCAGCCATTTATGATG
Found at i:706071 original size:18 final size:18
Alignment explanation
Indices: 706048--706088 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
706038 CGAAATATTC
706048 GTTATCAGCTCCTAAAGA
1 GTTATCAGCTCCTAAAGA
*
706066 GTTATCAGCTCCTCAAGA
1 GTTATCAGCTCCTAAAGA
706084 GTTAT
1 GTTAT
706089 GTTTCTCTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (18 bp):
GTTATCAGCTCCTAAAGA
Found at i:709308 original size:167 final size:167
Alignment explanation
Indices: 709015--709491 Score: 536
Period size: 167 Copynumber: 2.8 Consensus size: 167
709005 TCGAATAACT
* *
709015 CAGAAT-ATTCAATCGAAATTAAGCAAAAAGGAGGACAAAATAGCAACTAGCAAATAATGAGAAA
1 CAGAATAATTCAATCGAAATTAAGC-AAAA--AGGAC-AAATAGCAAGTAGCAAATCATGAGAAA
* * * *
709079 CAGC-AAAGCAAAGATATTTAATCCCCTGATGAAAGAACAATTCAATCAAACTCGTTCAAATTCT
62 CACCAAAAGCAAAGATCTTTAAT-CCCTAATGAAAGAACAATTCAATCAAACTCGTACAAATTCT
* * *
709143 AATAGCATAAGAAGATCAAACAGTTAACTTTCTT-TAAAAAA
126 AATAGCATAAGAAGAGCAAACAGCTAACTTTCTTAAAAAAAA
* *
709184 CAGCATACTTCAATCGAAATTAAGC-AAAAGGACAAATTAGCAAGTAGCAAATCATGAGAAACAC
1 CAGAATAATTCAATCGAAATTAAGCAAAAAGGACAAA-TAGCAAGTAGCAAATCATGAGAAACAC
* *
709248 CAAAAGCAAAGGTCTTTAATCACCTAATGAAAGAACTATTCAATCAAACTCGTACAAATTCTAAT
65 CAAAAGCAAAGATCTTTAATC-CCTAATGAAAGAACAATTCAATCAAACTCGTACAAATTCTAAT
* * *
709313 ATCATGAGAAGAGCAGACAGCTAACTTTCTTAAAAAAAA
129 AGCATAAGAAGAGCAAACAGCTAACTTTCTTAAAAAAAA
*
709352 CAGAATAATTCAATCAAAATTAAGCAAAAAGAAGGACACAATAGCAAGTAGCAAATCATGATTCA
1 CAGAATAATTCAATCGAAATTAAGC--AAA-AAGGACA-AATAGCAAGTAGCAAATCATG----A
* * * * *
709417 TGAGAA-ACAACAAAGCAAAGATC-TTAATCCCAAATAAAAGAACCATTCAATCAAACTCGTAGA
58 -GA-AACACCA-AAAGCAAAGATCTTTAATCCCTAATGAAAGAACAATTCAATCAAACTCGTACA
*
709480 AA-TATAATAGCA
120 AATTCTAATAGCA
709492 AACTGCGAAC
Statistics
Matches: 264, Mismatches: 27, Indels: 28
0.83 0.08 0.09
Matches are distributed among these distances:
165 3 0.01
166 31 0.12
167 82 0.31
168 31 0.12
169 5 0.02
170 17 0.06
171 2 0.01
172 26 0.10
173 2 0.01
175 8 0.03
176 33 0.12
177 11 0.04
178 13 0.05
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (167 bp):
CAGAATAATTCAATCGAAATTAAGCAAAAAGGACAAATAGCAAGTAGCAAATCATGAGAAACACC
AAAAGCAAAGATCTTTAATCCCTAATGAAAGAACAATTCAATCAAACTCGTACAAATTCTAATAG
CATAAGAAGAGCAAACAGCTAACTTTCTTAAAAAAAA
Found at i:711088 original size:21 final size:21
Alignment explanation
Indices: 711039--711090 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
711029 ATTAATTGTT
* * *
711039 ACAATACTGACATGATAATTT
1 ACAATATTAACATGATAATTC
* *
711060 ATAGTATTAACATGATAATTC
1 ACAATATTAACATGATAATTC
711081 ACAATATTAA
1 ACAATATTAA
711091 TGAATAATAT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.35
Consensus pattern (21 bp):
ACAATATTAACATGATAATTC
Found at i:711795 original size:49 final size:48
Alignment explanation
Indices: 711709--711803 Score: 127
Period size: 49 Copynumber: 2.0 Consensus size: 48
711699 ACTATATGAC
* * * *
711709 CAAACAGACTCTGACCCATGGCTTCATATTGGGGATGAACCAGACTCG
1 CAAACAGACCCTGACCCATGGCTCCAAATTGGAGATGAACCAGACTCG
* *
711757 CAAATAGACCCTGACCCCGTGGCTCCAAATTGGAGATGAACCAGACT
1 CAAACAGACCCTGA-CCCATGGCTCCAAATTGGAGATGAACCAGACT
711804 GAATTGTATG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
48 12 0.30
49 28 0.70
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (48 bp):
CAAACAGACCCTGACCCATGGCTCCAAATTGGAGATGAACCAGACTCG
Found at i:715601 original size:2 final size:2
Alignment explanation
Indices: 715594--715649 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
715584 ATTTTAGTGT
715594 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
715635 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
715650 TTTGAAATTA
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:716829 original size:104 final size:103
Alignment explanation
Indices: 716650--716856 Score: 405
Period size: 104 Copynumber: 2.0 Consensus size: 103
716640 TAACTTCACG
716650 ATCCCTTGCGCCATACTTCACATCAACTCGGCTGCCTTTGATGCCTCCACTTGCTCACGTCCCCT
1 ATCCCTTGCGCCATACTTCACATCAACTCGGCTGCCTTTGATGCCTCCACTTGCTCACGTCCCCT
716715 ATAAGGACTTGATCTCACCATAAAGGCTGTGCTTGCTT
66 ATAAGGACTTGATCTCACCATAAAGGCTGTGCTTGCTT
716753 ATCCCTTGCGCCATACTTCACATCAACTCGGCTGCCTTTTGATGCCTCCACTTGCTCACGTCCCC
1 ATCCCTTGCGCCATACTTCACATCAACTCGGCTGCC-TTTGATGCCTCCACTTGCTCACGTCCCC
716818 TATAAGGACTTGATCTCACCATAAAGGCTGTGCTTGCTT
65 TATAAGGACTTGATCTCACCATAAAGGCTGTGCTTGCTT
716857 TGGTTCTTTA
Statistics
Matches: 103, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
103 36 0.35
104 67 0.65
ACGTcount: A:0.19, C:0.34, G:0.16, T:0.30
Consensus pattern (103 bp):
ATCCCTTGCGCCATACTTCACATCAACTCGGCTGCCTTTGATGCCTCCACTTGCTCACGTCCCCT
ATAAGGACTTGATCTCACCATAAAGGCTGTGCTTGCTT
Found at i:724890 original size:20 final size:21
Alignment explanation
Indices: 724845--724898 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
724835 TACACAGTCA
*
724845 AGTATCGATACCCCAACACCAG
1 AGTATCGATA-CTCAACACCAG
*
724867 AGTATCGATACTCAAC-CTAG
1 AGTATCGATACTCAACACCAG
724887 AGTATCGATACT
1 AGTATCGATACT
724899 TCCTTAACCC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 15 0.50
21 5 0.17
22 10 0.33
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (21 bp):
AGTATCGATACTCAACACCAG
Found at i:724994 original size:20 final size:20
Alignment explanation
Indices: 724950--725002 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
724940 CAATAGGTGG
724950 GTATCGATAC-CAAGGGTAC
1 GTATCGATACTCAAGGGTAC
*
724969 GATATCGATACTGAAGGGT-C
1 G-TATCGATACTCAAGGGTAC
*
724989 AGTATCAATACTCA
1 -GTATCGATACTCA
725003 TGATCATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 1 0.04
20 20 0.71
21 7 0.25
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (20 bp):
GTATCGATACTCAAGGGTAC
Found at i:728741 original size:21 final size:21
Alignment explanation
Indices: 728700--728751 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
728690 CACCAAAGTG
*
728700 CCACATAGAATGTATCGAAGGA
1 CCACATAG-ATGTATCAAAGGA
728722 CCACATAGATGTCAT-AAAGGA
1 CCACATAGATGT-ATCAAAGGA
*
728743 CCACGTAGA
1 CCACATAGA
728752 AATGTCCCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.17
Consensus pattern (21 bp):
CCACATAGATGTATCAAAGGA
Found at i:728764 original size:23 final size:23
Alignment explanation
Indices: 728738--728795 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
728728 AGATGTCATA
728738 AAGGACCACGTAGAAATGTCCCG
1 AAGGACCACGTAGAAATGTCCCG
* * *
728761 AAGGACCACGTAGAATTTTTCCG
1 AAGGACCACGTAGAAATGTCCCG
728784 AAGGACCACGTA
1 AAGGACCACGTA
728796 CCCGAAGGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (23 bp):
AAGGACCACGTAGAAATGTCCCG
Found at i:728802 original size:16 final size:16
Alignment explanation
Indices: 728781--728811 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
728771 TAGAATTTTT
728781 CCGAAGGACCACGTAC
1 CCGAAGGACCACGTAC
*
728797 CCGAAGGACCGCGTA
1 CCGAAGGACCACGTA
728812 GAACCCTCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.35, G:0.29, T:0.06
Consensus pattern (16 bp):
CCGAAGGACCACGTAC
Found at i:734499 original size:13 final size:13
Alignment explanation
Indices: 734468--734492 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
734458 ATATTGCCTT
734468 ATATGATGTTTTG
1 ATATGATGTTTTG
734481 ATATGATGTTTT
1 ATATGATGTTTT
734493 ATTATGACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.56
Consensus pattern (13 bp):
ATATGATGTTTTG
Found at i:735855 original size:19 final size:21
Alignment explanation
Indices: 735831--735930 Score: 58
Period size: 20 Copynumber: 5.1 Consensus size: 21
735821 TTTTAACTTC
735831 TATATAATATTATATAGT-GT
1 TATATAATATTATATAGTAGT
*
735851 T-TATAAGTATAATAT-GTAGT
1 TATATAA-TATTATATAGTAGT
* *
735871 TATATAGTA-TATATAG-A-A
1 TATATAATATTATATAGTAGT
*
735889 TATATCATA-TATAT-GTA-T
1 TATATAATATTATATAGTAGT
*
735907 ATAGTATAATATTTTATAGT-GT
1 -TA-TATAATATTATATAGTAGT
735929 TA
1 TA
735931 AAATATGGTG
Statistics
Matches: 61, Mismatches: 9, Indels: 19
0.69 0.10 0.21
Matches are distributed among these distances:
17 1 0.02
18 13 0.21
19 14 0.23
20 20 0.33
21 10 0.16
22 3 0.05
ACGTcount: A:0.41, C:0.01, G:0.11, T:0.47
Consensus pattern (21 bp):
TATATAATATTATATAGTAGT
Found at i:735948 original size:2 final size:2
Alignment explanation
Indices: 735941--735969 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
735931 AAATATGGTG
735941 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
735970 ACTTTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:736041 original size:32 final size:33
Alignment explanation
Indices: 735980--736042 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 33
735970 ACTTTTTTTA
*
735980 AAATAATATATATATATATATAGTTTTGAAAAT
1 AAATAATATATATATATATATAGTATTGAAAAT
736013 AAATAA-ATAT-TATATATTATAGTATTGAAA
1 AAATAATATATATATATA-TATAGTATTGAAA
736043 TTAAGTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 6 0.21
32 16 0.57
33 6 0.21
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.41
Consensus pattern (33 bp):
AAATAATATATATATATATATAGTATTGAAAAT
Found at i:752332 original size:18 final size:17
Alignment explanation
Indices: 752309--752375 Score: 80
Period size: 18 Copynumber: 3.8 Consensus size: 17
752299 AATATTTATC
752309 CCGAAGGACCACTATGT
1 CCGAAGGACCACTATGT
* * *
752326 ACCGAAGGAGCTCTATAT
1 -CCGAAGGACCACTATGT
752344 CCCGAAGGACCACTATGT
1 -CCGAAGGACCACTATGT
752362 CCTGAAGGACCACT
1 CC-GAAGGACCACT
752376 GATAATCACT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
17 2 0.05
18 39 0.95
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (17 bp):
CCGAAGGACCACTATGT
Found at i:753042 original size:19 final size:19
Alignment explanation
Indices: 753018--753069 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
753008 TTTAAGGGGG
753018 TGCATCGATGCACTCTTCA
1 TGCATCGATGCACTCTTCA
753037 TGCATCGATGCACTCTTCA
1 TGCATCGATGCACTCTTCA
*
753056 TGCATCGATACACT
1 TGCATCGATGCACT
753070 AATTACATTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (19 bp):
TGCATCGATGCACTCTTCA
Found at i:754304 original size:37 final size:37
Alignment explanation
Indices: 754263--754337 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
754253 ATTTCATTGT
754263 TATTATCATTATGTCTCACTAAGTCGATGACTTAGCG
1 TATTATCATTATGTCTCACTAAGTCGATGACTTAGCG
754300 TATTATCATTATGTCTCACTAAGTCGATGACTTAGCG
1 TATTATCATTATGTCTCACTAAGTCGATGACTTAGCG
754337 T
1 T
754338 GTGAGTGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (37 bp):
TATTATCATTATGTCTCACTAAGTCGATGACTTAGCG
Found at i:757461 original size:21 final size:20
Alignment explanation
Indices: 757435--757491 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 20
757425 TTCTATAGCG
757435 CAAAGGATTGATCCCTTTGA
1 CAAAGGATTGATCCCTTTGA
*
757455 CCAAAGGATCGATCCC-TTGA
1 -CAAAGGATTGATCCCTTTGA
* *
757475 AAAAAGATTGATCCCTT
1 CAAAGGATTGATCCCTT
757492 GGATAATAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
19 12 0.39
20 5 0.16
21 14 0.45
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (20 bp):
CAAAGGATTGATCCCTTTGA
Found at i:757489 original size:19 final size:20
Alignment explanation
Indices: 757440--757492 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
757430 TAGCGCAAAG
* *
757440 GATTGATCCCTTTGACCAAAG
1 GATTGATCCC-TTGACAAAAA
*
757461 GATCGATCCCTTGA-AAAAA
1 GATTGATCCCTTGACAAAAA
757480 GATTGATCCCTTG
1 GATTGATCCCTTG
757493 GATAATAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 15 0.54
20 4 0.14
21 9 0.32
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (20 bp):
GATTGATCCCTTGACAAAAA
Found at i:761288 original size:21 final size:21
Alignment explanation
Indices: 761256--761316 Score: 115
Period size: 21 Copynumber: 3.0 Consensus size: 21
761246 TAAAAGGATT
761256 CACTCA-TTTTTCTAAATTCG
1 CACTCATTTTTTCTAAATTCG
761276 CACTCATTTTTTCTAAATTCG
1 CACTCATTTTTTCTAAATTCG
761297 CACTCATTTTTTCTAAATTC
1 CACTCATTTTTTCTAAATTC
761317 ATCGAGTCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
20 6 0.15
21 34 0.85
ACGTcount: A:0.25, C:0.25, G:0.03, T:0.48
Consensus pattern (21 bp):
CACTCATTTTTTCTAAATTCG
Found at i:768806 original size:22 final size:22
Alignment explanation
Indices: 768778--768823 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
768768 CATATATATA
*
768778 CAAATTTAAAATCGAATACATG
1 CAAATTTAAAATCGAAAACATG
768800 CAAATTTAAAATCGAAAACATG
1 CAAATTTAAAATCGAAAACATG
768822 CA
1 CA
768824 CTACTCTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.52, C:0.15, G:0.09, T:0.24
Consensus pattern (22 bp):
CAAATTTAAAATCGAAAACATG
Found at i:773543 original size:19 final size:19
Alignment explanation
Indices: 773510--773553 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
773500 GGTTTTTTGG
*
773510 ATTTTTTAATTATAATATTAA
1 ATTTTTTAA-TATAA-AATAA
773531 ATTTTTTAA-ATAAAATAA
1 ATTTTTTAATATAAAATAA
773549 ATTTT
1 ATTTT
773554 GAAATTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 9 0.41
19 4 0.18
21 9 0.41
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTTTTTAATATAAAATAA
Found at i:775718 original size:115 final size:115
Alignment explanation
Indices: 775513--775739 Score: 418
Period size: 115 Copynumber: 2.0 Consensus size: 115
775503 ATGCTTTTCC
* * *
775513 TTTTATTTGGCTTTGGATCTTTCTTCAAGTTCTTTCGCTACACAAAAATCAAACACCAGTGTTAC
1 TTTTATTTGGCTTTGGAGCTTTCTCCAAGTTCTTTCGCTACACAAAAATCAAACACCAGCGTTAC
775578 TAATGTTGTTAAGAGGCTTAAAGAATAGTTTAGAACATATCTTGAGGTCA
66 TAATGTTGTTAAGAGGCTTAAAGAATAGTTTAGAACATATCTTGAGGTCA
775628 TTTTATTTGGCTTTGGAGCTTTCTCCAAGTTCTTTCGCTACACAAAAATCAAACACCAGCGTTAC
1 TTTTATTTGGCTTTGGAGCTTTCTCCAAGTTCTTTCGCTACACAAAAATCAAACACCAGCGTTAC
*
775693 TAATGTTGTTAAGAGGCTTATAGAATAGTTTAGAACATATCTTGAGG
66 TAATGTTGTTAAGAGGCTTAAAGAATAGTTTAGAACATATCTTGAGG
775740 ATTAAATATT
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
115 108 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (115 bp):
TTTTATTTGGCTTTGGAGCTTTCTCCAAGTTCTTTCGCTACACAAAAATCAAACACCAGCGTTAC
TAATGTTGTTAAGAGGCTTAAAGAATAGTTTAGAACATATCTTGAGGTCA
Found at i:776337 original size:17 final size:17
Alignment explanation
Indices: 776312--776355 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
776302 TACTGCTTTA
*
776312 TGTTATACTATCTATTT
1 TGTTCTACTATCTATTT
776329 TGTTCTACTATCTATTT
1 TGTTCTACTATCTATTT
776346 TGTTCTACTA
1 TGTTCTACTA
776356 GCTCACTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.20, C:0.16, G:0.07, T:0.57
Consensus pattern (17 bp):
TGTTCTACTATCTATTT
Found at i:779996 original size:44 final size:44
Alignment explanation
Indices: 779359--779988 Score: 1134
Period size: 44 Copynumber: 14.3 Consensus size: 44
779349 AGTTTCTTAT
* * * *
779359 CAATATACATACCATTTAATCTATAAGCTCGTAAGCTTAATTTAC
1 CAATATACTTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTAC
* *
779404 CAATATACTTACCATTAAATCCCTAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATT-ATTCCATAAGCTCGTAAGCTTATTTTAC
779449 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
779493 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
779537 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
779581 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
779625 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
779669 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
779713 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
779757 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
*
779801 CAATATACTTACCATTATTCCATAAGCTCGCAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
779845 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
779889 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* * * *
779933 CAATATACTTACTATAATTTCGTAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
*
779977 CAATATTCTTAC
1 CAATATACTTAC
779989 TATAATTTGC
Statistics
Matches: 571, Mismatches: 13, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
44 517 0.91
45 54 0.09
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (44 bp):
CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
Found at i:780157 original size:59 final size:58
Alignment explanation
Indices: 780064--780631 Score: 379
Period size: 59 Copynumber: 9.6 Consensus size: 58
780054 TAGGAAATTT
* * * * * * *
780064 ATACAATTCGTATAATTTCCTTATAATATTAGCACTCTCAGTGCTCTATCTGGAATATC
1 ATACACTTAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAA-ATC
* * * ** * *
780123 ATATACTTAATATGATTTCCTTCTCATTTTAGCACACGAAGTGCCCTAT-TTGAGAATCC
1 ATACACTTAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGA-AAT-C
* * * * *
780182 ATAC-CATTAATATGA-TTCCTTTACCATTTTTAGCACA-TGAAGTGCCCTAT-TCGAGAATCC
1 ATACAC-TTAGTATGATTTCC-TTATCA-TTTTAGCACACT-CAGTGCTCTATATGGA-AAT-C
* * * * *
780242 ATAC-CATTAGTATGA-TCCCTTTACCATTTTTAGCACA-TGTAGTGCCCTATATGAAAATCC
1 ATACAC-TTAGTATGATTTCC-TTATCA-TTTTAGCACACT-CAGTGCTCTATATGGAAAT-C
* * * * * * * * *
780302 ATACTA-TTAGTATGATTTCCTTATCCTTGTAGTACCCTTAGTGATTTTTCTGGAAATC
1 ATAC-ACTTAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAATC
* * * * * * * *
780360 TATACACTCAGTATGATTCCCTTACCATTTTAGCACA-TATAATGCCCTATCTAGAAATCC
1 -ATACACTTAGTATGATTTCCTTATCATTTTAGCACACT-CAGTGCTCTATATGGAAAT-C
* * ** *
780420 ATATA-TTCAATATGACATCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCC
1 ATACACTT-AGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAAT-C
* * *
780479 ATACACTCAGTATGATTTTCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCC
1 ATACACTTAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAAT-C
*
780538 ATACACTCAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAATTC
1 ATACACTTAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAA-TC
*
780597 ATACA-TTCAGTAT-AATTCCTTATCATTTTAGCACA
1 ATACACTT-AGTATGATTTCCTTATCATTTTAGCACA
780632 TATAGTGCCA
Statistics
Matches: 418, Mismatches: 71, Indels: 41
0.79 0.13 0.08
Matches are distributed among these distances:
58 36 0.09
59 273 0.65
60 104 0.25
61 5 0.01
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (58 bp):
ATACACTTAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAATC
Found at i:780226 original size:60 final size:61
Alignment explanation
Indices: 780129--780323 Score: 265
Period size: 60 Copynumber: 3.3 Consensus size: 61
780119 TATCATATAC
*
780129 TTAATATGATTTCC-TT-CTCA-TTTTAGCACACGAAGTGCCCTATTTGAGAATCCATACCA
1 TTAATATGATTTCCTTTAC-CATTTTTAGCACATGAAGTGCCCTATTTGAGAATCCATACCA
*
780188 TTAATATGA-TTCCTTTACCATTTTTAGCACATGAAGTGCCCTATTCGAGAATCCATACCA
1 TTAATATGATTTCCTTTACCATTTTTAGCACATGAAGTGCCCTATTTGAGAATCCATACCA
* * * * * *
780248 TTAGTATGA-TCCCTTTACCATTTTTAGCACATGTAGTGCCCTATATGAAAATCCATACTA
1 TTAATATGATTTCCTTTACCATTTTTAGCACATGAAGTGCCCTATTTGAGAATCCATACCA
*
780308 TTAGTATGATTTCCTT
1 TTAATATGATTTCCTT
780324 ATCCTTGTAG
Statistics
Matches: 122, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
58 4 0.03
59 13 0.11
60 100 0.82
61 5 0.04
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (61 bp):
TTAATATGATTTCCTTTACCATTTTTAGCACATGAAGTGCCCTATTTGAGAATCCATACCA
Found at i:780418 original size:118 final size:117
Alignment explanation
Indices: 780064--780640 Score: 471
Period size: 118 Copynumber: 4.9 Consensus size: 117
780054 TAGGAAATTT
* * * * * * * *
780064 ATACAATTCGTATAATTTCCTTATAATATTAGCACTCTCAGTGCTCTATCTGGAATATC-ATATA
1 ATACTATTAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAA-ATCTATACA
* * * * *
780128 CTTAATATGATTTCCTT-CTCATTTTAGCACACGA-AGTGCCCTATTTGAGAATCC
65 CTCAGTATGATTCCCTTAC-CATTTTAGCACA-TATAGTGCCCTATATGA-AATCC
* * * * * * *
780182 ATACCATTAATATGA-TTCCTTTACCATTTTTAGCACA-TGAAGTGCCCTAT-TCGAGAATCCAT
1 ATACTATTAGTATGATTTCC-TTATCA-TTTTAGCACACT-CAGTGCTCTATATGGA-AATCTAT
* *
780244 AC-CATTAGTATGA-TCCCTTTACCATTTTTAGCACATGTAGTGCCCTATATGAAAATCC
62 ACAC-TCAGTATGATTCCC-TTACCA-TTTTAGCACATATAGTGCCCTATATG-AAATCC
* * * * * * * * *
780302 ATACTATTAGTATGATTTCCTTATCCTTGTAGTACCCTTAGTGATTTTTCTGGAAATCTATACAC
1 ATACTATTAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAATCTATACAC
* *
780367 TCAGTATGATTCCCTTACCATTTTAGCACATATAATGCCCTATCTAGAAATCC
66 TCAGTATGATTCCCTTACCATTTTAGCACATATAGTGCCCTATAT-GAAATCC
* ** * *
780420 ATA-TATTCAATATGACATCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACA
1 ATACTATT-AGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAATCTATACA
** * *
780484 CTCAGTATGATTTTCTTATCATTTTAGCACACT-CAGTGCTCC-ATATGGAAATCC
65 CTCAGTATGATTCCCTTACCATTTTAGCACA-TATAGTGC-CCTATAT-GAAATCC
*
780538 ATAC-ACTCAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAAT-TCATAC
1 ATACTA-TTAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAATCT-ATAC
* * *
780601 ATTCAGTATAATT-CCTTATCATTTTAGCACATATAGTGCC
64 ACTCAGTATGATTCCCTTACCATTTTAGCACATATAGTGCC
780641 ATTTGGTAAT
Statistics
Matches: 369, Mismatches: 66, Indels: 50
0.76 0.14 0.10
Matches are distributed among these distances:
116 2 0.01
117 30 0.08
118 205 0.56
119 73 0.20
120 54 0.15
121 5 0.01
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (117 bp):
ATACTATTAGTATGATTTCCTTATCATTTTAGCACACTCAGTGCTCTATATGGAAATCTATACAC
TCAGTATGATTCCCTTACCATTTTAGCACATATAGTGCCCTATATGAAATCC
Found at i:780535 original size:177 final size:173
Alignment explanation
Indices: 780081--780631 Score: 490
Period size: 177 Copynumber: 3.1 Consensus size: 173
780071 TCGTATAATT
* * * * * * *
780081 TCCTTATAATATTAGCACTCTCAGTGCTCTATCTGGAATAT-CATATACTTAATATGATTTCCTT
1 TCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAA-ATCCATACACTTAGTATGATTTCCTT
* * * * * *
780145 CTCATTTTAGCACACGAAGTGC-CCTATTTGAGAATCCATAC-CATTAATATGATTCCTTTACCA
65 ATCATTTTAGCACACTAAGTGCTCCTA-TGGA-AATCCATACAC-TCAGTATGATTCCCTTACCA
*
780208 TTTTTAGCACATGAAGTGCCCTATTCGAGAATCCATACCATT-AGTATG-A
127 -TTTTAGCACAT-AAGTGCCCTATTAGA-AATCCATA-CATTCAGTATGAA
* * *
780257 TCCCTTTACCATTTTTAGCACA-TGTAGTGC-CCTATATGAAAATCCATACTA-TTAGTATGATT
1 T-CC-TTATCA-TTTTAGCACACT-CAGTGCTCC-ATATGGAAATCCATAC-ACTTAGTATGATT
* * * * * * ** * *
780319 TCCTTATCCTTGTAGTACCCTTAGTGATTTTTCTGGAAATCTATACACTCAGTATGATTCCCTTA
60 TCCTTATCATTTTAGCACACTAAGTG-CTCCTATGGAAATCCATACACTCAGTATGATTCCCTTA
* * *
780384 CCATTTTAGCACATATAATGCCCTATCTAGAAATCCATATATTCAATATGACA
124 CCATTTTAGCACATA-AGTGCCCTAT-TAGAAATCCATACATTCAGTATGA-A
* *
780437 TCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTTCTTA
1 TCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTTAGTATGATTTCCTTA
* * *
780502 TCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTCAGTATGATTTCCTTATCATTT
66 TCATTTTAGCACACTAAGTGCTCC-TATGGAAATCCATACACTCAGTATGATTCCCTTACCATTT
* * * *
780567 TAGCACACTCAGTGCTCTATATGGAAATTCATACATTCAGTAT-AA
130 TAGCACA-TAAGTGCCCTAT-TAGAAATCCATACATTCAGTATGAA
780612 TTCCTTATCATTTTAGCACA
1 -TCCTTATCATTTTAGCACA
780632 TATAGTGCCA
Statistics
Matches: 299, Mismatches: 55, Indels: 42
0.76 0.14 0.11
Matches are distributed among these distances:
175 1 0.00
176 23 0.08
177 135 0.45
178 50 0.17
179 82 0.27
180 7 0.02
181 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (173 bp):
TCCTTATCATTTTAGCACACTCAGTGCTCCATATGGAAATCCATACACTTAGTATGATTTCCTTA
TCATTTTAGCACACTAAGTGCTCCTATGGAAATCCATACACTCAGTATGATTCCCTTACCATTTT
AGCACATAAGTGCCCTATTAGAAATCCATACATTCAGTATGAA
Found at i:781009 original size:19 final size:19
Alignment explanation
Indices: 780960--781010 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
780950 TTCTGGCCCT
780960 TATGTATCGATGCACTCAA
1 TATGTATCGATGCACTCAA
780979 TAGTGTATCGATGCACTGC-A
1 TA-TGTATCGATGCACT-CAA
*
780999 TATGCATCGATG
1 TATGTATCGATG
781011 TATTTATTGC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 11 0.38
20 17 0.59
21 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (19 bp):
TATGTATCGATGCACTCAA
Found at i:781068 original size:19 final size:19
Alignment explanation
Indices: 781044--781095 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
781034 CAATTGAAGG
781044 GTGTATCGATGCACCACCT
1 GTGTATCGATGCACCACCT
781063 GTGTATCGATGCACCACCT
1 GTGTATCGATGCACCACCT
781082 GTGTATCGATGCAC
1 GTGTATCGATGCAC
781096 TTTTCCCAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (19 bp):
GTGTATCGATGCACCACCT
Found at i:789185 original size:16 final size:16
Alignment explanation
Indices: 789137--789185 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
789127 TTACTATTCA
789137 TGTGAATAGTGAATTT
1 TGTGAATAGTGAATTT
*
789153 CGTGAATAGTGAATTT
1 TGTGAATAGTGAATTT
*
789169 TGTGAATAGTAAATTT
1 TGTGAATAGTGAATTT
789185 T
1 T
789186 TTTGTCGGCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.43
Consensus pattern (16 bp):
TGTGAATAGTGAATTT
Found at i:792190 original size:24 final size:24
Alignment explanation
Indices: 792133--792214 Score: 59
Period size: 24 Copynumber: 3.6 Consensus size: 24
792123 ATTTTTTATA
* *
792133 TATACTTATTATTTTCATAGTATT
1 TATATTTATTATTTTCATAATATT
*
792157 TATATATATTATTTT-ATTAATATT
1 TATATTTATTATTTTCA-TAATATT
* *
792181 T-CA-TT-TTATTTTCA-AGTATT
1 TATATTTATTATTTTCATAATATT
792201 T-TATTTCATTATTT
1 TATATTT-ATTATTT
792215 ATTTTTCTGT
Statistics
Matches: 46, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
20 7 0.15
21 9 0.20
22 2 0.04
23 8 0.17
24 20 0.43
ACGTcount: A:0.29, C:0.06, G:0.02, T:0.62
Consensus pattern (24 bp):
TATATTTATTATTTTCATAATATT
Found at i:795502 original size:15 final size:15
Alignment explanation
Indices: 795482--795513 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
795472 GATCAATACC
795482 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
795497 TTTTGCATACATTCA
1 TTTTGCATACATGCA
795512 TT
1 TT
795514 ATTCATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:799282 original size:9 final size:9
Alignment explanation
Indices: 799268--799299 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
799258 AAATGGCAAT
799268 CATTCTTTA
1 CATTCTTTA
799277 CATTCTTTA
1 CATTCTTTA
*
799286 CATTTTTTA
1 CATTCTTTA
799295 CATTC
1 CATTC
799300 ATTATTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (9 bp):
CATTCTTTA
Done.