genome.fa.s8665.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008665.1 Hibiscus syriacus cultivar Beakdansim tig00111668_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71518

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4469--4547	25	2.8	29	77	16	103	43	8	13	34	1.76
11099--11123	12	2.1	12	100	0	50	52	32	0	16	1.44
23363--23390	2	14.0	2	100	0	56	50	0	0	50	1.00
24275--24322	13	3.5	13	72	10	51	37	4	10	47	1.57
24259--24331	28	2.6	28	97	0	137	34	8	10	46	1.69
27310--27751	222	2.0	225	92	3	741	45	8	7	39	1.61
27814--27860	20	2.4	19	89	10	76	55	10	17	17	1.69
27980--28026	20	2.4	19	79	10	58	55	8	17	19	1.67
30324--30389	33	2.0	33	87	0	96	28	1	45	24	1.62
32180--32223	19	2.4	19	92	3	72	31	2	9	56	1.43
32306--35117	199	14.1	199	97	0	5229	37	15	14	31	1.88
36579--36646	21	3.4	18	69	21	55	36	8	35	19	1.83
36579--36676	6	16.3	6	80	0	70	36	7	34	21	1.81
36594--36680	3	29.0	3	77	0	84	35	5	34	24	1.79
36582--36672	42	2.2	42	91	0	146	35	7	35	21	1.83
36579--36676	18	5.4	18	78	0	88	36	7	34	21	1.81
38046--38715	183	3.7	184	97	0	1272	35	14	15	34	1.89
41266--41328	23	2.7	23	90	0	90	36	6	19	38	1.77
41266--41338	23	3.2	23	86	3	85	35	5	19	39	1.75
41694--41756	23	2.7	23	90	0	90	36	6	19	38	1.77
41694--41766	23	3.2	23	86	3	85	35	5	19	39	1.75
42122--42184	23	2.7	23	90	0	90	36	6	19	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42122--42194	23	3.2	23	86	3	85	35	5	19	39	1.75
42197--42235	20	2.0	20	89	0	60	25	15	10	48	1.76
42551--42613	23	2.7	23	90	0	90	36	6	19	38	1.77
42551--42623	23	3.2	23	86	3	85	35	5	19	39	1.75
42626--42664	20	2.0	20	89	0	60	25	15	10	48	1.76
42978--43040	23	2.7	23	90	0	90	36	6	19	38	1.77
42978--43050	23	3.2	23	86	3	85	35	5	19	39	1.75
41168--43890	428	6.4	431	98	1	5217	39	8	13	38	1.74
43406--43468	23	2.7	24	85	7	85	34	6	20	38	1.78
43406--43478	23	3.2	23	82	3	76	34	5	20	39	1.76
43830--43890	21	2.7	23	82	7	72	36	6	19	37	1.78
44096--44132	18	2.1	18	89	0	56	32	5	10	51	1.60
44088--44134	24	2.0	24	86	0	67	34	4	14	46	1.64
52884--52965	27	3.1	25	79	10	92	34	4	20	40	1.74
52884--52966	26	3.1	26	72	10	78	34	4	20	39	1.74
55061--55122	31	2.0	31	96	0	115	37	19	14	29	1.91
55061--55131	31	2.5	29	84	11	94	38	16	15	29	1.90
58624--58657	16	2.2	16	89	5	52	20	0	5	73	1.04
59024--59129	54	2.0	54	88	0	158	27	12	18	41	1.86
65810--65866	29	2.0	29	100	0	114	42	17	22	17	1.89
67000--67024	6	4.2	6	100	0	50	32	32	16	20	1.94
68288--68316	14	2.1	14	93	6	51	6	13	17	62	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68953--69038	31	2.8	31	76	11	88	22	24	16	37	1.93
68953--69027	30	2.5	30	79	14	82	24	25	16	34	1.95
70212--70271	30	2.0	31	96	3	113	41	10	13	35	1.78
70319--70363	22	2.0	23	86	4	65	42	2	4	51	1.34

Tables:   1

The End!