genome.fa.s8666.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008666.1 Hibiscus syriacus cultivar Beakdansim tig00111669_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  184521

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373--404	15	2.1	15	94	0	55	15	15	28	40	1.88
1344--1513	90	1.8	90	87	8	252	44	11	10	33	1.74
1926--1967	22	1.9	22	85	9	59	50	4	0	45	1.23
4435--4517	17	5.4	17	64	21	56	34	2	3	59	1.28
4435--4478	13	3.0	14	87	12	54	40	0	0	59	0.98
14299--14443	73	2.0	73	91	0	236	45	5	9	39	1.60
14520--14552	17	2.0	17	88	5	50	48	0	6	45	1.27
14646--14726	19	4.1	18	74	16	63	28	20	14	35	1.93
14629--14775	20	7.3	20	81	6	163	31	23	12	32	1.92
15471--15521	22	2.3	22	96	0	93	21	13	43	21	1.87
15684--15750	21	3.2	21	86	0	98	40	20	22	16	1.91
16332--16376	11	4.2	11	78	16	58	20	26	31	22	1.98
22273--22357	17	5.5	17	64	21	51	36	3	2	57	1.29
22258--22376	16	8.1	13	68	22	58	39	3	1	55	1.26
22262--22378	32	3.9	29	73	17	96	37	3	1	57	1.26
22762--22817	16	3.3	16	75	22	60	57	1	1	39	1.20
30158--30197	21	1.9	21	85	10	55	35	10	2	52	1.48
32571--32631	23	2.7	23	89	0	95	27	27	26	18	1.98
33275--33432	63	2.5	65	81	9	184	27	18	20	33	1.96
36538--36792	125	2.0	125	88	1	377	23	27	16	32	1.96
37702--37777	40	1.9	39	84	7	100	25	19	15	39	1.91
40068--40110	6	7.2	6	87	7	61	48	16	16	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41323--41368	24	1.9	24	86	8	67	34	17	15	32	1.91
49212--49306	43	2.2	43	88	0	136	36	27	12	23	1.91
49464--49535	21	3.3	21	72	14	56	52	0	4	43	1.20
49672--49727	28	1.9	29	85	7	78	60	1	0	37	1.07
50513--50544	15	2.1	15	94	0	55	15	15	28	40	1.88
51404--51665	91	2.8	91	83	8	276	44	11	9	34	1.73
52049--52089	22	1.9	22	90	5	66	56	2	0	41	1.13
52078--52119	22	1.9	22	85	9	59	50	4	0	45	1.23
54592--54674	17	5.4	17	64	21	56	34	2	3	59	1.28
54592--54701	16	7.2	16	68	17	65	35	2	2	59	1.26
54592--54635	13	3.0	14	87	12	54	40	0	0	59	0.98
64460--64604	73	2.0	73	91	0	236	45	5	9	39	1.60
64682--64714	17	2.0	17	88	5	50	48	0	6	45	1.27
64808--64888	19	4.1	18	74	16	63	28	20	14	35	1.93
64791--64937	20	7.3	20	81	6	163	31	23	12	32	1.92
65634--65683	22	2.3	22	96	0	91	22	14	42	22	1.88
65846--65912	21	3.2	21	86	0	98	40	20	22	16	1.91
66493--66537	11	4.2	11	78	16	58	20	26	31	22	1.98
73545--73669	28	4.4	26	70	20	81	37	4	1	56	1.28
73537--73668	16	9.2	13	67	21	50	38	3	1	56	1.27
74042--74099	16	3.4	16	76	21	64	56	1	1	39	1.19
74041--74109	35	2.0	34	86	8	95	56	1	2	39	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79234--79329	43	2.2	43	88	0	138	36	27	13	22	1.92
79486--79557	21	3.3	21	72	14	56	52	0	4	43	1.20
79694--79749	28	1.9	29	82	7	69	58	1	0	39	1.08
85338--85369	15	2.1	15	94	0	55	15	15	28	40	1.88
86227--86488	91	2.8	91	83	8	276	44	11	9	34	1.73
86872--86912	22	1.9	22	90	5	66	56	2	0	41	1.13
86901--86942	22	1.9	22	85	9	59	50	4	0	45	1.23
89380--89476	16	6.4	16	68	17	57	36	3	3	57	1.30
89380--89423	13	3.0	14	87	12	54	40	0	0	59	0.98
89382--89423	14	3.1	13	83	16	50	40	0	0	59	0.97
99165--99307	72	2.0	72	90	2	225	44	5	9	39	1.61
99515--99636	21	6.1	20	83	6	131	29	23	13	32	1.94
99515--99636	20	6.1	20	83	6	149	29	23	13	32	1.94
100373--100436	19	3.2	21	84	10	89	37	21	23	17	1.94
100999--101043	11	4.2	11	78	16	58	20	26	31	22	1.98
107256--107493	112	2.1	117	93	4	414	46	5	8	38	1.59
108643--108757	13	8.8	13	68	17	60	39	3	0	56	1.22
108953--109225	135	2.0	135	97	1	521	26	28	11	34	1.91
109287--109328	21	2.1	19	86	8	57	52	0	0	47	1.00
110595--110653	25	2.3	25	82	2	73	57	0	0	42	0.98
116616--116655	21	1.9	21	85	10	55	35	10	2	52	1.48
119070--119130	23	2.7	23	89	0	95	27	27	26	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119772--119933	63	2.6	65	83	8	192	27	18	20	32	1.96
123030--123284	125	2.0	125	87	1	359	23	28	16	32	1.96
126560--126602	6	7.2	6	87	7	61	48	16	16	18	1.81
138377--138448	21	3.3	21	72	14	56	52	0	4	43	1.20
139425--139456	15	2.1	15	94	0	55	15	15	28	40	1.88
143477--143501	3	8.3	3	100	0	50	0	32	0	68	0.90
146124--146169	22	2.1	22	100	0	92	73	0	4	21	1.00
147156--147192	7	5.4	7	93	6	67	0	13	0	86	0.57
148178--148994	194	4.2	191	81	7	934	35	16	11	36	1.84
157063--157126	24	2.7	24	77	0	65	50	15	9	25	1.74
157825--157947	29	4.3	29	73	6	106	42	21	7	29	1.79
157950--157992	12	3.3	12	84	12	50	18	25	39	16	1.91
157970--158020	18	2.9	17	91	5	84	15	19	47	17	1.83
158035--158086	9	5.3	10	84	11	72	36	30	19	13	1.90
164332--164395	24	2.7	24	77	0	65	50	15	9	25	1.74
165095--165217	29	4.3	29	73	6	106	42	21	7	29	1.79
165220--165262	12	3.3	12	84	12	50	18	25	39	16	1.91
165240--165290	18	2.9	17	91	5	84	15	19	47	17	1.83
165305--165356	9	5.3	10	84	11	72	36	30	19	13	1.90
167195--167227	16	2.1	16	94	0	57	48	6	21	24	1.72
168800--168876	31	2.5	31	78	2	82	15	27	29	27	1.96
181504--181783	92	3.0	93	85	4	330	40	12	10	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182135--182175	22	1.9	22	90	5	66	56	2	0	41	1.13
184109--184157	17	2.9	16	76	23	55	59	0	2	38	1.09

Tables:   1

The End!