Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008669.1 Hibiscus syriacus cultivar Beakdansim tig00111676_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41776

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
322--378
15
3.5
15
71
17
51
40
15
21
22
1.91
316--587
36
7.9
36
77
13
268
38
14
20
26
1.91
351--536
99
1.9
101
86
4
270
40
13
19
26
1.89
1066--1101
18
2.0
18
88
0
54
41
30
8
19
1.81
1514--1562
22
2.2
22
88
0
71
30
12
24
32
1.92
1526--1569
22
2.0
22
81
0
52
34
11
22
31
1.90
2207--2289
8
10.2
8
72
14
55
0
13
9
77
1.00
2194--2249
24
2.3
23
82
11
60
1
12
8
76
1.08
2213--2286
16
4.5
17
77
12
66
0
12
9
78
0.97
6933--6966
16
2.1
16
88
5
50
64
0
8
26
1.22
7539--7640
34
2.9
36
88
7
163
28
13
13
44
1.82
7685--7709
2
12.5
2
100
0
50
48
0
0
52
1.00
8098--8136
12
3.2
12
85
3
51
41
2
0
56
1.13
8098--8131
12
2.7
13
90
4
52
44
0
0
55
0.99
9740--9823
42
2.0
42
97
0
159
30
7
10
51
1.64
14846--14922
31
2.5
31
82
2
100
28
31
25
14
1.95
14799--14922
63
2.0
63
82
6
153
26
29
27
16
1.97
15812--15857
5
8.8
5
86
9
65
4
21
54
19
1.61
15805--15852
22
2.2
22
100
0
96
8
22
50
18
1.74
15798--15867
27
2.4
28
86
11
97
12
24
45
17
1.83
15854--15941
9
9.3
9
73
9
68
29
27
26
17
1.97
15882--15937
29
2.0
28
86
10
78
32
25
25
17
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22167--22243
31
2.5
31
82
2
100
28
31
25
14
1.95
22120--22243
63
2.0
63
82
6
153
26
29
27
16
1.97
23133--23212
5
14.8
5
77
14
79
7
22
51
18
1.71
23126--23212
22
4.0
22
100
0
174
9
22
49
18
1.76
23138--23213
17
4.9
16
73
16
63
9
22
50
18
1.75
23209--23296
9
9.3
9
75
9
77
29
28
26
15
1.96
23209--23296
19
4.7
19
76
14
69
29
28
26
15
1.96
29530--29606
31
2.5
31
82
2
100
28
31
25
14
1.95
29483--29606
63
2.0
63
82
6
153
26
29
27
16
1.97
30496--30570
5
13.8
5
76
15
69
8
22
50
18
1.73
30501--30571
17
3.9
17
89
10
97
9
22
49
18
1.77
30489--30553
22
3.0
22
100
0
130
9
23
49
18
1.76
30567--30654
9
9.3
9
75
9
77
29
28
26
15
1.96
30567--30654
19
4.7
19
76
14
69
29
28
26
15
1.96
36885--36961
31
2.5
31
82
2
100
28
31
25
14
1.95
36838--36961
63
2.0
63
82
6
153
26
29
27
16
1.97
37840--37923
21
4.0
21
93
6
145
9
25
46
19
1.79
37840--37923
43
2.0
40
93
6
141
9
25
46
19
1.79
37848--37905
5
11.0
5
77
17
55
6
22
51
18
1.70
37920--38007
9
9.3
9
75
9
77
29
28
26
15
1.96
37920--38007
19
4.7
19
76
14
69
29
28
26
15
1.96

Tables:   1

The End!