Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000867.1 Hibiscus syriacus cultivar Beakdansim tig00001674_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 604573
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
File 3 of 3
Found at i:503542 original size:42 final size:41
Alignment explanation
Indices: 503493--503580 Score: 99
Period size: 42 Copynumber: 2.1 Consensus size: 41
503483 AAATCATTAA
* *
503493 ATATTTATAATAAATAATT-ATTAGTAATCATGATTAAATCAT
1 ATATTTAT--TAAATAATTAATTAATAATAATGATTAAATCAT
* *
503535 ATATTTATTAAATCATTAGATTAATAATAATTATTAAATCAT
1 ATATTTATTAAATAATTA-ATTAATAATAATGATTAAATCAT
503577 -TATT
1 ATATT
503581 AGTAATATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
40 8 0.20
41 4 0.10
42 28 0.70
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (41 bp):
ATATTTATTAAATAATTAATTAATAATAATGATTAAATCAT
Found at i:503573 original size:26 final size:27
Alignment explanation
Indices: 503500--503578 Score: 83
Period size: 26 Copynumber: 2.9 Consensus size: 27
503490 TAAATATTTA
503500 TAATAAATAATTATTAGTAATCA-T-GAT
1 TAATAAATAATTATTA--AATCATTAGAT
* *
503527 TAAATCATATATTTATTAAATCATTAGAT
1 T-AAT-AAATAATTATTAAATCATTAGAT
503556 TAAT-AATAATTATTAAATCATTA
1 TAATAAATAATTATTAAATCATTA
503579 TTAGTAATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
26 17 0.39
27 6 0.14
28 7 0.16
29 14 0.32
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.43
Consensus pattern (27 bp):
TAATAAATAATTATTAAATCATTAGAT
Found at i:503581 original size:29 final size:28
Alignment explanation
Indices: 503499--503595 Score: 76
Period size: 29 Copynumber: 3.4 Consensus size: 28
503489 TTAAATATTT
503499 ATAATAAATAATTATTAGTAATCATGATTA-A
1 ATAAT-AATAATTATTA--AATCAT-ATTAGA
* *
503530 ATCAT-ATATTTATTAAATC--ATTAGA
1 ATAATAATAATTATTAAATCATATTAGA
*
503555 TTAATAATAATTATTAAATCATTATTAGTA
1 ATAATAATAATTATTAAATCA-TATTAG-A
*
503585 ATATTAATAAT
1 ATAATAATAAT
503596 CAATCAATCA
Statistics
Matches: 53, Mismatches: 7, Indels: 13
0.73 0.10 0.18
Matches are distributed among these distances:
24 4 0.08
25 4 0.08
26 13 0.25
27 4 0.08
29 14 0.26
30 10 0.19
31 4 0.08
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.43
Consensus pattern (28 bp):
ATAATAATAATTATTAAATCATATTAGA
Found at i:506656 original size:18 final size:18
Alignment explanation
Indices: 506626--506706 Score: 64
Period size: 18 Copynumber: 4.8 Consensus size: 18
506616 ATTTGATAGT
*
506626 AATGATTAGTAATAATGA
1 AATGATTATTAATAATGA
* **
506644 AATTATTATTAAT-ATTT
1 AATGATTATTAATAATGA
*
506661 AATGA-T-TTGAT-A-GA
1 AATGATTATTAATAATGA
*
506675 AATGATTAGTAATAATGA
1 AATGATTATTAATAATGA
*
506693 AATTATTATTAATA
1 AATGATTATTAATA
506707 TTTAATGATT
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 5 0.11
15 6 0.13
16 4 0.09
17 7 0.15
18 25 0.53
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (18 bp):
AATGATTATTAATAATGA
Found at i:506671 original size:49 final size:49
Alignment explanation
Indices: 506611--506730 Score: 231
Period size: 49 Copynumber: 2.4 Consensus size: 49
506601 AAAATTATAA
506611 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATT
1 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATT
*
506660 TAATGATTTGATAGAAATGATTAGTAATAATGAAATTATTATTAATATT
1 TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATT
506709 TAATGATTTGATAGTAATGATT
1 TAATGATTTGATAGTAATGATT
506731 TTAATATTTG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 69 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.44
Consensus pattern (49 bp):
TAATGATTTGATAGTAATGATTAGTAATAATGAAATTATTATTAATATT
Found at i:506731 original size:22 final size:21
Alignment explanation
Indices: 506702--506742 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
506692 AAATTATTAT
506702 TAATA-TTTAATGATTTGATAG
1 TAATATTTTAAT-ATTTGATAG
506723 TAATGATTTTAATATTTGAT
1 TAAT-ATTTTAATATTTGAT
506743 GATTTAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 8 0.44
23 6 0.33
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (21 bp):
TAATATTTTAATATTTGATAG
Found at i:506757 original size:11 final size:11
Alignment explanation
Indices: 506741--507084 Score: 150
Period size: 12 Copynumber: 28.2 Consensus size: 11
506731 TTAATATTTG
*
506741 ATGATTTAGTA
1 ATGATTTAATA
506752 ATGATTTTAATA
1 ATGA-TTTAATA
506764 TTATGATTTAATA
1 --ATGATTTAATA
506777 ATGATTTAATA
1 ATGATTTAATA
* * * * * *
506788 TTTAATGATTTG
1 ATGATTTA-ATA
506800 ATGATTTAATA
1 ATGATTTAATA
506811 ATGATTTGATAATA
1 ATGA-TT--TAATA
* *
506825 ATCATTATAGTA
1 ATGATT-TAATA
506837 ATGATTTGATAATA
1 ATGA-TT--TAATA
*
506851 ATCATTATAATA
1 ATGATT-TAATA
*
506863 ATGATTTAGTAATT
1 ATGA-TT--TAATA
*
506877 ATCATTATAATA
1 ATGATT-TAATA
506889 ATGATTTAATA
1 ATGATTTAATA
506900 ATGATATTAATA
1 ATGAT-TTAATA
* * * * * *
506912 TTTAATGATTTG
1 ATGATTTA-ATA
506924 ATGATTTAATA
1 ATGATTTAATA
506935 ATGATTTGATAATA
1 ATGA-TT--TAATA
*
506949 ATTATTATAATA
1 ATGATT-TAATA
506961 ATGATTTAGTAATA
1 ATGA-TT--TAATA
*
506975 ATCATTATAATA
1 ATGATT-TAATA
506987 AT-ATTTAATA
1 ATGATTTAATA
* *
506997 ATAATGATAATA
1 ATGAT-TTAATA
507009 ATGATTTAATAGTA
1 ATGATTT-A-A-TA
507023 ATGATTTAATA
1 ATGATTTAATA
*
507034 ATGATTTAGTA
1 ATGATTTAATA
*
507045 ATAATTTTTAATA
1 ATGA--TTTAATA
507058 ATGATTTAATACTA
1 ATGATTT-A-A-TA
507072 ATGATTTAATA
1 ATGATTTAATA
507083 AT
1 AT
507085 TATTACTAAT
Statistics
Matches: 256, Mismatches: 49, Indels: 56
0.71 0.14 0.16
Matches are distributed among these distances:
10 7 0.03
11 69 0.27
12 83 0.32
13 36 0.14
14 61 0.24
ACGTcount: A:0.43, C:0.01, G:0.09, T:0.46
Consensus pattern (11 bp):
ATGATTTAATA
Found at i:506769 original size:25 final size:27
Alignment explanation
Indices: 506701--506798 Score: 130
Period size: 27 Copynumber: 3.6 Consensus size: 27
506691 GAAATTATTA
506701 TTAATATTTAATGATTTGATAGTAATGATT
1 TTAATATTTAATGA-TT--TAGTAATGATT
*
506731 TTAATATTTGATGATTTAGTAATGATT
1 TTAATATTTAATGATTTAGTAATGATT
*
506758 TTAATA-TT-ATGATTTAATAATGA-T
1 TTAATATTTAATGATTTAGTAATGATT
506782 TTAATATTTAATGATTT
1 TTAATATTTAATGATTT
506799 GATGATTTAA
Statistics
Matches: 64, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
24 7 0.11
25 16 0.25
26 9 0.14
27 17 0.27
29 2 0.03
30 13 0.20
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (27 bp):
TTAATATTTAATGATTTAGTAATGATT
Found at i:506798 original size:8 final size:8
Alignment explanation
Indices: 506775--506809 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
506765 TATGATTTAA
506775 TAATGATT
1 TAATGATT
506783 TAAT-ATT
1 TAATGATT
506790 TAATGATT
1 TAATGATT
*
506798 TGATGATT
1 TAATGATT
506806 TAAT
1 TAAT
506810 AATGATTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (8 bp):
TAATGATT
Found at i:506838 original size:26 final size:26
Alignment explanation
Indices: 506806--507084 Score: 236
Period size: 26 Copynumber: 11.3 Consensus size: 26
506796 TTTGATGATT
506806 TAATAATGATTTGATAATAATCATTA
1 TAATAATGATTTGATAATAATCATTA
*
506832 TAGTAATGATTTGATAATAATCATTA
1 TAATAATGATTTGATAATAATCATTA
*
506858 TAATAATGATTT-AGTAATTATCATTA
1 TAATAATGATTTGA-TAATAATCATTA
* *
506884 TAATAATGATTTAATAATGAT-ATTAA
1 TAATAATGATTTGATAATAATCATT-A
* *
506910 TATTTAATGATTTG------ATGATT-
1 TA-ATAATGATTTGATAATAATCATTA
*
506930 TAATAATGATTTGATAATAATTATTA
1 TAATAATGATTTGATAATAATCATTA
506956 TAATAATGATTT-AGTAATAATCATTA
1 TAATAATGATTTGA-TAATAATCATTA
* *
506982 TAATAAT-A-TT--TAATAATAATGA
1 TAATAATGATTTGATAATAATCATTA
* * *
507004 TAATAATGATTTAATAGTAATGATT-
1 TAATAATGATTTGATAATAATCATTA
*
507029 TAATAATGATTT-AGTAATAAT--TTT
1 TAATAATGATTTGA-TAATAATCATTA
* * *
507053 TAATAATGATTTAATACTAATGATT-
1 TAATAATGATTTGATAATAATCATTA
507078 TAATAAT
1 TAATAAT
507085 TATTACTAAT
Statistics
Matches: 215, Mismatches: 16, Indels: 45
0.78 0.06 0.16
Matches are distributed among these distances:
19 10 0.05
20 2 0.01
21 2 0.01
22 20 0.09
23 3 0.01
24 23 0.11
25 37 0.17
26 108 0.50
27 10 0.05
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.45
Consensus pattern (26 bp):
TAATAATGATTTGATAATAATCATTA
Found at i:506936 original size:19 final size:19
Alignment explanation
Indices: 506889--506944 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
506879 CATTATAATA
*
506889 ATGATTTAATAATGATATTA
1 ATGATTTAATAATGAT-TTG
506909 AT-A-TT--TAATGATTTG
1 ATGATTTAATAATGATTTG
506924 ATGATTTAATAATGATTTG
1 ATGATTTAATAATGATTTG
506943 AT
1 AT
506945 AATAATTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
15 4 0.13
16 8 0.26
17 2 0.06
18 2 0.06
19 13 0.42
20 2 0.06
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (19 bp):
ATGATTTAATAATGATTTG
Found at i:506939 original size:124 final size:122
Alignment explanation
Indices: 506709--507033 Score: 428
Period size: 124 Copynumber: 2.6 Consensus size: 122
506699 TATTAATATT
* * * *
506709 TAATGATTTGATAGTAATGATTTTAATATTTGATGATTTAGTAATGAT-TT-TAATATTATGATT
1 TAATGATTTGATAATAATCATTATAATA----ATGATTTAGTAATTATATTATAATA--ATGATT
*
506772 TAATAATGATTTAATATTTAATGATTTGATGATTTAATAATGATTTGATAATAATCATTATAG
60 TAATAATGATTTAATATTTAATGATTTGATGATTTAATAATGATTTGATAATAATCATTATAA
506835 TAATGATTTGATAATAATCATTATAATAATGATTTAGTAATTATCATTATAATAATGATTTAATA
1 TAATGATTTGATAATAATCATTATAATAATGATTTAGTAATTAT-ATTATAATAATGATTTAATA
*
506900 ATGATATTAATATTTAATGATTTGATGATTTAATAATGATTTGATAATAATTATTATAA
65 ATGAT-TTAATATTTAATGATTTGATGATTTAATAATGATTTGATAATAATCATTATAA
* *
506959 TAATGATTT-AGTAATAATCATTATAATAAT-ATTTAATAA-TA-ATGATAATAATGATTTAATA
1 TAATGATTTGA-TAATAATCATTATAATAATGATTTAGTAATTATATTATAATAATGATTT-A-A
507020 GTAATGATTTAATA
63 -TAATGATTTAATA
507034 ATGATTTAGT
Statistics
Matches: 183, Mismatches: 8, Indels: 20
0.87 0.04 0.09
Matches are distributed among these distances:
120 15 0.08
121 1 0.01
122 24 0.13
123 32 0.17
124 81 0.44
125 5 0.03
126 25 0.14
ACGTcount: A:0.42, C:0.01, G:0.10, T:0.46
Consensus pattern (122 bp):
TAATGATTTGATAATAATCATTATAATAATGATTTAGTAATTATATTATAATAATGATTTAATAA
TGATTTAATATTTAATGATTTGATGATTTAATAATGATTTGATAATAATCATTATAA
Found at i:506956 original size:98 final size:98
Alignment explanation
Indices: 506806--507097 Score: 348
Period size: 98 Copynumber: 3.0 Consensus size: 98
506796 TTTGATGATT
* * * * *
506806 TAATAATGATTTGATAATAATCATTATAGTAATGATTTGATAATAATCATTATAATAATGATTTA
1 TAATAATGATTTAATAGTAATGATT-TAATAATGATTTGATAATAATTATTATAATAATGATTTA
*
506871 GTAATTATCATTATAATAATGA-TT-TAATAATGA
65 GTAATAATCATTATAATAAT-ATTTATAATAATGA
* * *
506904 TATTAAT-ATTTAATGATTTGATGATTTAATAATGATTTGATAATAATTATTATAATAATGATTT
1 TAATAATGATTTAAT-A-GTAATGATTTAATAATGATTTGATAATAATTATTATAATAATGATTT
506968 AGTAATAATCATTATAATAATATTTAATAATAATGA
64 AGTAATAATCATTATAATAATATTT-ATAATAATGA
507004 TAATAATGATTTAATAGTAATGATTTAATAATGATTT-AGTAATAATT-TT-TAATAATGATTTA
1 TAATAATGATTTAATAGTAATGATTTAATAATGATTTGA-TAATAATTATTATAATAATGATTTA
* * *
507066 ATACTAATGATT-TAATAAT-TATTACTAATAAT
65 GTAATAATCATTATAATAATAT-TTA-TAATAAT
507098 TATAGAATAA
Statistics
Matches: 171, Mismatches: 14, Indels: 20
0.83 0.07 0.10
Matches are distributed among these distances:
95 2 0.01
96 16 0.09
97 29 0.17
98 68 0.40
99 33 0.19
100 16 0.09
101 7 0.04
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (98 bp):
TAATAATGATTTAATAGTAATGATTTAATAATGATTTGATAATAATTATTATAATAATGATTTAG
TAATAATCATTATAATAATATTTATAATAATGA
Found at i:507249 original size:59 final size:57
Alignment explanation
Indices: 507169--507290 Score: 181
Period size: 59 Copynumber: 2.1 Consensus size: 57
507159 TCGAATTTAT
* *
507169 TAATGATTTTTTAAATATTTAATGATTTGATACTAATGATTTACTAATTATTATTAA
1 TAATGATTTTTTAAATATTTAATGATTTGATACTAATGATTTACTAATGATTACTAA
* * *
507226 TAATGATTTATTATTAATATTTAATTATTTGATACTAATGATTTACTAATGATTACTAG
1 TAATGATTT-TT-TAAATATTTAATGATTTGATACTAATGATTTACTAATGATTACTAA
507285 TAATGA
1 TAATGA
507291 AATTATAATA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 9 0.16
58 2 0.03
59 47 0.81
ACGTcount: A:0.39, C:0.04, G:0.08, T:0.49
Consensus pattern (57 bp):
TAATGATTTTTTAAATATTTAATGATTTGATACTAATGATTTACTAATGATTACTAA
Found at i:507250 original size:24 final size:24
Alignment explanation
Indices: 507202--507246 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
507192 GATTTGATAC
*
507202 TAATGATTTACTAATTATTATTAA
1 TAATGATTTACTAATTAATATTAA
*
507226 TAATGATTTA-TTATTAATATT
1 TAATGATTTACTAATTAATATT
507247 TAATTATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (24 bp):
TAATGATTTACTAATTAATATTAA
Found at i:507253 original size:17 final size:17
Alignment explanation
Indices: 507213--507254 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
507203 AATGATTTAC
507213 TAATTATTATTAATAAT
1 TAATTATTATTAATAAT
* * *
507230 GATTTATTATTAATATT
1 TAATTATTATTAATAAT
507247 TAATTATT
1 TAATTATT
507255 TGATACTAAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (17 bp):
TAATTATTATTAATAAT
Found at i:509303 original size:65 final size:65
Alignment explanation
Indices: 509167--509329 Score: 231
Period size: 65 Copynumber: 2.5 Consensus size: 65
509157 CGGTGCACCA
*
509167 AGTGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAAATAGCCTGGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGCCAGGTGCATCGATGCATGG
** * **
509231 CTTGTGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATATTCAGAGTGCATCGATGCATG
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGCCAG-GTGCATCGATGCATG
509295 G
65 G
* *
509296 AGTGTGCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATGAAATGCATTCGATGTT
509330 CAATTAATTC
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
64 37 0.43
65 49 0.57
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (65 bp):
AGTGTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGCCAGGTGCATCGATGCATGG
Found at i:509369 original size:65 final size:64
Alignment explanation
Indices: 509169--509378 Score: 223
Period size: 65 Copynumber: 3.2 Consensus size: 64
509159 GTGCACCAAG
* * ** *
509169 TGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG-C
1 TGTGCATCGGTGCATGAAATGCATTCGATGTTT-CAAAATATTCAGAGTGCATCGATGCATGGAC
* * *
509232 TTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGGA
1 -TGTGCATCGGTGCATGAAATGCATTCGATG-TTTCAAAATATTCAGAGTGCATCGATGCATGGA
*
509297 G
64 C
* *
509298 TGTGCATCGGTGCATGGAATGCATTCGATG-TTC-AATTAATTCATCGA-TGCATCGATGCATGG
1 TGTGCATCGGTGCATGAAATGCATTCGATGTTTCAAAAT-ATTCA--GAGTGCATCGATGCATGG
509360 AC
63 AC
509362 TGATGCATCGGTGCATG
1 TG-TGCATCGGTGCATG
509379 CCTTTGAATA
Statistics
Matches: 127, Mismatches: 12, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
62 3 0.02
63 7 0.06
64 55 0.43
65 62 0.49
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (64 bp):
TGTGCATCGGTGCATGAAATGCATTCGATGTTTCAAAATATTCAGAGTGCATCGATGCATGGAC
Found at i:509569 original size:20 final size:21
Alignment explanation
Indices: 509546--509585 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
509536 GAATCGAATA
509546 TAAAAT-TGTAAAA-TCATTTG
1 TAAAATCT-TAAAATTCATTTG
509566 TAAAATCTTAAAATTCATTT
1 TAAAATCTTAAAATTCATTT
509586 AACTTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.42
Consensus pattern (21 bp):
TAAAATCTTAAAATTCATTTG
Found at i:515820 original size:22 final size:21
Alignment explanation
Indices: 515778--515817 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
515768 GAGTTTGTTT
*
515778 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
515799 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
515818 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:517963 original size:65 final size:63
Alignment explanation
Indices: 517763--517972 Score: 246
Period size: 65 Copynumber: 3.3 Consensus size: 63
517753 GTGCACCAAG
* *
517763 TGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATATCCTGGTGCATCGATGCATGG-C
1 TGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAAT-TCATGATGCATCGATGCATGGAC
*
517826 TTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCA-GAGTGCATCGATGCATGG
1 -TGTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAA-ATTCATGA-TGCATCGATGCATGG
*
517890 AG
62 AC
* * * *
517892 TGTGCATCGGTGCATGGAATGCATTCGATG-TTCAATTAATTCATCGATGCATCGATGCATGGAC
1 TGTGCATCGATGCATGAAATGCATTCGATGTTTGAA-AAATTCAT-GATGCATCGATGCATGGAC
*
517956 TGATGCATCGGTGCATG
1 TG-TGCATCGATGCATG
517973 CCTTTGAATA
Statistics
Matches: 128, Mismatches: 10, Indels: 15
0.84 0.07 0.10
Matches are distributed among these distances:
63 9 0.07
64 49 0.38
65 68 0.53
66 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (63 bp):
TGTGCATCGATGCATGAAATGCATTCGATGTTTGAAAAATTCATGATGCATCGATGCATGGAC
Found at i:518166 original size:20 final size:21
Alignment explanation
Indices: 518141--518180 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
518131 AATCGAAATA
518141 TAAAAT-TGTAAAA-TCATTTG
1 TAAAATCT-TAAAATTCATTTG
518161 TAAAATCTTAAAATTCATTT
1 TAAAATCTTAAAATTCATTT
518181 AACTTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.42
Consensus pattern (21 bp):
TAAAATCTTAAAATTCATTTG
Found at i:519270 original size:15 final size:16
Alignment explanation
Indices: 519250--519283 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
519240 CAAAAAAAAT
519250 TAATATAAT-AACTTA
1 TAATATAATAAACTTA
519265 TAATATAATAAACTTA
1 TAATATAATAAACTTA
519281 TAA
1 TAA
519284 AGTAACAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
TAATATAATAAACTTA
Found at i:519371 original size:30 final size:30
Alignment explanation
Indices: 519338--519441 Score: 138
Period size: 30 Copynumber: 3.4 Consensus size: 30
519328 TTCCTTAAAC
*
519338 AACTAATAAACTATTCTTTAATATAACTTC
1 AACTAATAAACTATTCTTTAATATAACTTA
*
519368 AACTAATAAACTATTCTTTAATATAACCTA
1 AACTAATAAACTATTCTTTAATATAACTTA
* * *
519398 AACTAATAAACGATTTTTTAATTATAATTTA
1 AACTAATAAACTATTCTTTAA-TATAACTTA
519429 ATACTAA-AAACTA
1 A-ACTAATAAACTA
519442 ATTAACTAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
30 47 0.72
31 13 0.20
32 5 0.08
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (30 bp):
AACTAATAAACTATTCTTTAATATAACTTA
Found at i:519389 original size:15 final size:15
Alignment explanation
Indices: 519341--519390 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
519331 CTTAAACAAC
519341 TAATAAACTATTCTT
1 TAATAAACTATTCTT
**
519356 TAATATAAC--TTCAAC
1 TAATA-AACTATTC-TT
519371 TAATAAACTATTCTT
1 TAATAAACTATTCTT
519386 TAATA
1 TAATA
519391 TAACCTAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 8
0.69 0.10 0.21
Matches are distributed among these distances:
14 6 0.22
15 15 0.56
16 6 0.22
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.42
Consensus pattern (15 bp):
TAATAAACTATTCTT
Found at i:519992 original size:29 final size:29
Alignment explanation
Indices: 519959--520043 Score: 125
Period size: 29 Copynumber: 2.9 Consensus size: 29
519949 GGAGGACAAG
*
519959 GTCGCCCAACGTGCATGGCGACCTACCAT
1 GTCGCCCAGCGTGCATGGCGACCTACCAT
* **
519988 GTCGCCTAGCGTGCATGGCGACCTATAAT
1 GTCGCCCAGCGTGCATGGCGACCTACCAT
*
520017 GTCGCACAGCGTGCATGGCGACCTACC
1 GTCGCCCAGCGTGCATGGCGACCTACC
520044 CTCACTCGAC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (29 bp):
GTCGCCCAGCGTGCATGGCGACCTACCAT
Found at i:520114 original size:72 final size:72
Alignment explanation
Indices: 520029--520164 Score: 256
Period size: 72 Copynumber: 1.9 Consensus size: 72
520019 CGCACAGCGT
520029 GCATGGCGACCTACCCTCACTCGACTGC-CATGGATGCCCTCGCATAGCTCGCTCGGATGGCCTC
1 GCATGGCGACCTACCCTCACTCGACTGCAC-TGGATGCCCTCGCATAGCTCGCTCGGATGGCCTC
520093 GGTCCATG
65 GGTCCATG
520101 GCATGGCGACCTACCCTCACTCGACTGCACTGGATGCCCTCGCATAGCTCGCTCGGATGGCCTC
1 GCATGGCGACCTACCCTCACTCGACTGCACTGGATGCCCTCGCATAGCTCGCTCGGATGGCCTC
520165 AGTCGGATGC
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
72 62 0.98
73 1 0.02
ACGTcount: A:0.15, C:0.38, G:0.26, T:0.21
Consensus pattern (72 bp):
GCATGGCGACCTACCCTCACTCGACTGCACTGGATGCCCTCGCATAGCTCGCTCGGATGGCCTCG
GTCCATG
Found at i:524167 original size:35 final size:36
Alignment explanation
Indices: 524103--524185 Score: 104
Period size: 35 Copynumber: 2.4 Consensus size: 36
524093 TTTGGTTAAT
524103 TTTGTT-TA-TTACCATTTAATATCAGTTATTGTAA-
1 TTTGTTATATTTACCATTTAATATCA-TTATTGTAAG
524137 TTTGGTTATTATTTACCATTTAATA-C-TTATTGTAAG
1 TTT-GTTA-TATTTACCATTTAATATCATTATTGTAAG
524173 TTTGTTATATTTA
1 TTTGTTATATTTA
524186 AAATTATATT
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
34 9 0.20
35 16 0.36
36 3 0.07
37 3 0.07
38 13 0.30
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (36 bp):
TTTGTTATATTTACCATTTAATATCATTATTGTAAG
Found at i:532391 original size:24 final size:24
Alignment explanation
Indices: 532363--532431 Score: 129
Period size: 24 Copynumber: 2.9 Consensus size: 24
532353 GATGGGGCCA
532363 CACCGTTTGGAGTGATGCGTGAAT
1 CACCGTTTGGAGTGATGCGTGAAT
532387 CACCGTTTGGAGTGATGCGTGAAT
1 CACCGTTTGGAGTGATGCGTGAAT
*
532411 CACCGTTTGGAGAGATGCGTG
1 CACCGTTTGGAGTGATGCGTG
532432 TGTAGACATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.20, C:0.17, G:0.35, T:0.28
Consensus pattern (24 bp):
CACCGTTTGGAGTGATGCGTGAAT
Found at i:532471 original size:3 final size:3
Alignment explanation
Indices: 532459--532510 Score: 59
Period size: 3 Copynumber: 16.7 Consensus size: 3
532449 TATAATAATA
* * *
532459 ATT ATA ATT ATT ATT AAT ATA ATAT ATT ATT ATT ATT ATT ATT ATTT
1 ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT A-TT
532506 ATT AT
1 ATT AT
532511 ATATATATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 36 0.88
4 5 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:532487 original size:19 final size:19
Alignment explanation
Indices: 532451--532526 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 19
532441 TAATTTTTTA
532451 TAATAATAATTATAATTATTAT
1 TAAT-ATAA-TAT-ATTATTAT
532473 TAATATAATATATTATTAT
1 TAATATAATATATTATTAT
* *
532492 TATTATTAT-TATTTATTAT
1 TAATATAATATA-TTATTAT
532511 ATATATATATATATAT
1 -TA-ATATA-ATATAT
532527 ATATATATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
18 2 0.04
19 22 0.49
20 5 0.11
21 7 0.16
22 7 0.16
23 2 0.04
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TAATATAATATATTATTAT
Found at i:532508 original size:22 final size:22
Alignment explanation
Indices: 532451--532510 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
532441 TAATTTTTTA
*
532451 TAATAATAA-TTATAATTATTAT
1 TAAT-ATAATTTATTATTATTAT
*
532473 TAATATAATATATTATTATTAT
1 TAATATAATTTATTATTATTAT
* *
532495 TATTATTATTTATTAT
1 TAATATAATTTATTAT
532511 ATATATATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 4 0.12
22 28 0.88
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TAATATAATTTATTATTATTAT
Found at i:532515 original size:2 final size:2
Alignment explanation
Indices: 532475--532536 Score: 59
Period size: 2 Copynumber: 35.0 Consensus size: 2
532465 ATTATTATTA
*
532475 AT AT A- AT AT AT -T AT -T AT -T AT -T AT -T AT -T AT TT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
532509 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
532537 TACAAATTAC
Statistics
Matches: 50, Mismatches: 2, Indels: 16
0.74 0.03 0.24
Matches are distributed among these distances:
1 8 0.16
2 42 0.84
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
AT
Found at i:532523 original size:12 final size:11
Alignment explanation
Indices: 532459--532536 Score: 68
Period size: 10 Copynumber: 8.0 Consensus size: 11
532449 TATAATAATA
532459 ATTATA-AT-T
1 ATTATATATAT
532468 ATTAT-TA-AT
1 ATTATATATAT
*
532477 ATAATATAT-T
1 ATTATATATAT
532487 ATTAT-TAT-T
1 ATTATATATAT
*
532496 ATTAT-TATTT
1 ATTATATATAT
532506 ATTATATATAT
1 ATTATATATAT
532517 A-TATATATAT
1 ATTATATATAT
532527 A-TATATATAT
1 ATTATATATAT
532537 TACAAATTAC
Statistics
Matches: 60, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
9 23 0.38
10 32 0.53
11 5 0.08
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTATATATAT
Found at i:533810 original size:15 final size:15
Alignment explanation
Indices: 533790--533860 Score: 56
Period size: 15 Copynumber: 4.6 Consensus size: 15
533780 ATCCAATAGT
533790 TTTTAATATTATTAC
1 TTTTAATATTATTAC
* *
533805 TTTTAAT-TTCTTTC
1 TTTTAATATTATTAC
533819 ATTTTAATTATTATTA-
1 -TTTTAA-TATTATTAC
*
533835 TTTTATTTTATTATTAC
1 TTTTA--ATATTATTAC
*
533852 TTTTGATAT
1 TTTTAATAT
533861 ATGTTTAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
14 5 0.12
15 21 0.49
16 9 0.21
17 8 0.19
ACGTcount: A:0.27, C:0.06, G:0.01, T:0.66
Consensus pattern (15 bp):
TTTTAATATTATTAC
Found at i:533900 original size:11 final size:11
Alignment explanation
Indices: 533825--533900 Score: 50
Period size: 11 Copynumber: 6.5 Consensus size: 11
533815 TTTCATTTTA
533825 ATTATTATTATT
1 ATTATT-TTATT
533837 -TTATTTTATT
1 ATTATTTTATT
533847 ATTACTTTTGA-T
1 ATTA-TTTT-ATT
533859 A-TATGTTTAAATT
1 ATTAT-TTT--ATT
* *
533872 ATTATCTTCATG
1 ATTAT-TTTATT
533884 ATTATTTTATT
1 ATTATTTTATT
533895 ATTATT
1 ATTATT
533901 AAGTTATATA
Statistics
Matches: 51, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
10 6 0.12
11 23 0.45
12 14 0.27
13 3 0.06
14 5 0.10
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:534801 original size:13 final size:13
Alignment explanation
Indices: 534766--534807 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
534756 TTTCAAATTT
534766 TTTATATATACTTA
1 TTTATATATA-TTA
* *
534780 TTT-TTTATAGTA
1 TTTATATATATTA
534792 TTTATATATATTA
1 TTTATATATATTA
534805 TTT
1 TTT
534808 TATTTTATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 5 0.22
13 15 0.65
14 3 0.13
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (13 bp):
TTTATATATATTA
Found at i:539748 original size:26 final size:27
Alignment explanation
Indices: 539718--539771 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
539708 TATTATACTC
539718 ATCCAGCAAAGAAA-GAAGAAAG-AAAA
1 ATCCAGCAAAGAAAGGAA-AAAGCAAAA
539744 ATCCAGCAAAGAAAGGAAAAAGCAAAA
1 ATCCAGCAAAGAAAGGAAAAAGCAAAA
539771 A
1 A
539772 GCAAAAAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.65, C:0.13, G:0.19, T:0.04
Consensus pattern (27 bp):
ATCCAGCAAAGAAAGGAAAAAGCAAAA
Found at i:539777 original size:14 final size:13
Alignment explanation
Indices: 539759--539839 Score: 73
Period size: 14 Copynumber: 6.5 Consensus size: 13
539749 GCAAAGAAAG
*
539759 GAAAAAGCAAAAA
1 GAAAAAGAAAAAA
539772 GCAAAAAGAAAAAA
1 G-AAAAAGAAAAAA
* *
539786 AAAAAAG-GAAAA
1 GAAAAAGAAAAAA
*
539798 -AAAAA-AAAAAG
1 GAAAAAGAAAAAA
539809 GAAAAAGGAAAAAA
1 GAAAAA-GAAAAAA
539823 G-AAAA-AAAAAA
1 GAAAAAGAAAAAA
539834 GAAAAA
1 GAAAAA
539840 TTGAATCAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
11 15 0.27
12 13 0.23
13 11 0.20
14 17 0.30
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (13 bp):
GAAAAAGAAAAAA
Found at i:539778 original size:1 final size:1
Alignment explanation
Indices: 539774--539839 Score: 51
Period size: 1 Copynumber: 66.0 Consensus size: 1
539764 AGCAAAAAGC
* ** ** ** * *
539774 AAAAAGAAAAAAAAAAAAGGAAAAAAAAAAAAAAGGAAAAAGGAAAAAAGAAAAAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
539839 A
1 A
539840 TTGAATCAAG
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 53 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (1 bp):
A
Found at i:539786 original size:16 final size:15
Alignment explanation
Indices: 539774--539838 Score: 78
Period size: 15 Copynumber: 4.3 Consensus size: 15
539764 AGCAAAAAGC
539774 AAAAAG-AAAAAAAA
1 AAAAAGAAAAAAAAA
*
539788 AAAAGGAAAAAAAAA
1 AAAAAGAAAAAAAAA
* **
539803 AAAAAGGAAAAAGGA
1 AAAAAGAAAAAAAAA
539818 AAAAAGAAAAAAAAA
1 AAAAAGAAAAAAAAA
539833 AGAAAA
1 A-AAAA
539839 ATTGAATCAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
14 5 0.12
15 32 0.78
16 4 0.10
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAAAAA
Found at i:539850 original size:26 final size:26
Alignment explanation
Indices: 539755--539839 Score: 90
Period size: 23 Copynumber: 3.4 Consensus size: 26
539745 TCCAGCAAAG
*
539755 AAAGGAAAAA-GCAAAAAGCAAAAAGAA
1 AAAGGAAAAAGGAAAAAAG-AAAAA-AA
**
539782 AAAAAAAAAAGGAAAAAA-AAAAA--
1 AAAGGAAAAAGGAAAAAAGAAAAAAA
539805 AAAGGAAAAAGGAAAAAAGAAAAAAA
1 AAAGGAAAAAGGAAAAAAGAAAAAAA
539831 AAA-GAAAAA
1 AAAGGAAAAA
539840 TTGAATCAAG
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
23 16 0.33
24 5 0.10
25 6 0.12
26 8 0.16
27 8 0.16
28 6 0.12
ACGTcount: A:0.82, C:0.02, G:0.15, T:0.00
Consensus pattern (26 bp):
AAAGGAAAAAGGAAAAAAGAAAAAAA
Found at i:542320 original size:114 final size:114
Alignment explanation
Indices: 542120--542339 Score: 343
Period size: 114 Copynumber: 1.9 Consensus size: 114
542110 CACGTTCTCG
* * *
542120 TAGTAGAAATAAGGAGACATAATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTT
1 TAGTAGAAATAAGGAGACACAATAACATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGATTC
* * *
542185 GGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATTTGCTCA
66 GATAAGAACCCCAAAACCAATCATTGGAATTGAAAGATGAATTTGCTCA
* *
542234 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTTG-TT
1 TAGTAGAAATAAGGAGACACAATAACATCTTCTGGAAATGTTCTTTGAGTTATCTGATC-TGATT
*
542298 CGATAAGAACCCCAGAACCAATCATTGGAATTGAAAGATGAA
65 CGATAAGAACCCCAAAACCAATCATTGGAATTGAAAGATGAA
542340 CTGCATGATC
Statistics
Matches: 96, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
114 94 0.98
115 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (114 bp):
TAGTAGAAATAAGGAGACACAATAACATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGATTC
GATAAGAACCCCAAAACCAATCATTGGAATTGAAAGATGAATTTGCTCA
Found at i:543342 original size:35 final size:35
Alignment explanation
Indices: 543291--543357 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
543281 TTTAACCAAA
543291 AATAGAATATTGGGGCATT-TTGAAGGCTCATAAC
1 AATAGAATATTGGGGCATTCTTGAAGGCTCATAAC
* *
543325 AATATGAATATTTGGGCATTCTTGGAGGCTCAT
1 AATA-GAATATTGGGGCATTCTTGAAGGCTCAT
543358 CTCAACAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 4 0.14
35 14 0.48
36 11 0.38
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (35 bp):
AATAGAATATTGGGGCATTCTTGAAGGCTCATAAC
Found at i:544926 original size:22 final size:22
Alignment explanation
Indices: 544901--544998 Score: 171
Period size: 22 Copynumber: 4.5 Consensus size: 22
544891 ATCTACATTC
544901 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
544923 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
544945 TTCAAAGATGAAAGATTCT-TT
1 TTCAAAGATGATAGATTCTCTT
*
544966 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
544988 TTCAAAGATGA
1 TTCAAAGATGA
544999 AAGCTTTATG
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
21 19 0.27
22 52 0.73
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:544986 original size:43 final size:44
Alignment explanation
Indices: 544901--545001 Score: 177
Period size: 43 Copynumber: 2.3 Consensus size: 44
544891 ATCTACATTC
*
544901 TTCAAAGATGATAGATTCTCTTTTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGAAAGATTCTCTTTTCAAAGATGATAGATTCTCTT
*
544945 TTCAAAGATGAAAGATTCT-TTTTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGAAAGATTCTCTTTTCAAAGATGATAGATTCTCTT
544988 TTCAAAGATGAAAG
1 TTCAAAGATGAAAG
545002 CTTTATGGGA
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
43 37 0.67
44 18 0.33
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.39
Consensus pattern (44 bp):
TTCAAAGATGAAAGATTCTCTTTTCAAAGATGATAGATTCTCTT
Found at i:545869 original size:184 final size:186
Alignment explanation
Indices: 545548--545918 Score: 647
Period size: 184 Copynumber: 2.0 Consensus size: 186
545538 CCAATCAACA
* *
545548 TGTTATTTTGAAAAAATAATGAGAAAACGATTTCCCTAGTTTCTCATTCAATCTTTTCTAAAAAT
1 TGTTATTTTGAAAAAATAATGAGAAAACGATTTCCATAATTTCTCATTCAATCTTTTCTAAAAAT
*
545613 GAAATTGTTGAAAAGTAAGAAAACGATTTTCTTAGTTTTTTTACTTAGTAAACTATTTCCCACAT
66 GAAATTGTTGAAAAGTAAGAAAACGATTTCCTTAGTTTTTTTACTTAGTAAACTATTTCCCACAT
*
545678 CTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
131 CTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
**
545734 TGTTATTTTG-AAAAATAATGAGAAAACGATTTCCATAATTTCTCATTTTATCTTTTCT-AAAAT
1 TGTTATTTTGAAAAAATAATGAGAAAACGATTTCCATAATTTCTCATTCAATCTTTTCTAAAAAT
* *
545797 GAAATTGTTGAAAAGTAAGAAAACGATTTCCTTAGTTTTTTTACTTATTAAACTATTTCCTACAT
66 GAAATTGTTGAAAAGTAAGAAAACGATTTCCTTAGTTTTTTTACTTAGTAAACTATTTCCCACAT
*
545862 CTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGTTGT
131 CTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
545918 T
1 T
545919 TTCAAGCCTT
Statistics
Matches: 176, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
184 122 0.69
185 44 0.25
186 10 0.06
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.40
Consensus pattern (186 bp):
TGTTATTTTGAAAAAATAATGAGAAAACGATTTCCATAATTTCTCATTCAATCTTTTCTAAAAAT
GAAATTGTTGAAAAGTAAGAAAACGATTTCCTTAGTTTTTTTACTTAGTAAACTATTTCCCACAT
CTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
Found at i:545956 original size:75 final size:76
Alignment explanation
Indices: 545859--546499 Score: 1074
Period size: 75 Copynumber: 8.5 Consensus size: 76
545849 CTATTTCCTA
*
545859 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGTTGTTTTC-A
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
545923 AGCCTTCGGGT
66 AGCCTTCGGGT
* *
545934 CATTTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATATTTTC-A
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
545998 AGCCTTCGGGT
66 AGCCTTCGGGT
*
546009 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGGGCTTTTTGATGTTTTC-A
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
546073 AGCCTTCGGGT
66 AGCCTTCGGGT
* * *
546084 CATCTATAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCAGGAGCTTTTTGTTGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
546149 AGCCTTAGGGT
66 AGCCTTCGGGT
546160 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-A
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
546224 AGCCTTCGGGT
66 AGCCTTCGGGT
*
546235 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAACTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
546300 AGCCTTAGGGT
66 AGCCTTCGGGT
*
546311 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
546376 AGCCTTAGGGT
66 AGCCTTCGGGT
*
546387 CATCTGTAAGTCCTACAGTACATGATGTTTCCAAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCC-AAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-
* *
546452 AAAACCTTCAGGT
64 AAAGCCTTCGGGT
* * *
546465 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAA
546500 CATTTTCATC
Statistics
Matches: 534, Mismatches: 28, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
75 276 0.52
76 186 0.35
77 34 0.06
78 38 0.07
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTCGGGT
Found at i:546226 original size:151 final size:151
Alignment explanation
Indices: 545859--546499 Score: 1088
Period size: 151 Copynumber: 4.2 Consensus size: 151
545849 CTATTTCCTA
*
545859 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGTTGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
545924 GCCTTCGGGTCATTTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTG
66 GCCTTCGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTG
* *
545989 ATATTTTC-AAGCCTTCGGGT
131 ATGTTTTCAAAGCCTTAGGGT
*
546009 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGGGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
* *
546074 GCCTTCGGGTCATCTATAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCAGGAGCTTTTTG
66 GCCTTCGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTG
*
546139 TTGTTTTCAAAGCCTTAGGGT
131 ATGTTTTCAAAGCCTTAGGGT
546160 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
546225 GCCTTCGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAACTTTTTG
66 GCCTTCGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTG
546290 ATGTTTTCAAAGCCTTAGGGT
131 ATGTTTTCAAAGCCTTAGGGT
*
546311 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-A
* *
546376 AGCCTTAGGGTCATCTGTAAGTCCTACAGTACATGATGTTTCCAAAAAAGCCTTCGGGAGCTTTT
65 AGCCTTCGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCC-AAAAAGCCTTCGGGAGCTTTT
*
546441 TGATGTTTTCAAAAACCTTCA-GGT
129 TGATGTTTTC-AAAGCCTT-AGGGT
* * *
546465 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAA
546500 CATTTTCATC
Statistics
Matches: 465, Mismatches: 21, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
150 131 0.28
151 219 0.47
152 42 0.09
153 30 0.06
154 42 0.09
155 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (151 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
GCCTTCGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTG
ATGTTTTCAAAGCCTTAGGGT
Found at i:546640 original size:3 final size:3
Alignment explanation
Indices: 546628--546675 Score: 51
Period size: 3 Copynumber: 15.3 Consensus size: 3
546618 TATAATAATA
* * *
546628 ATT ATA ATT ATT ATT AAT ATA ATAT ATT ATT ATT ATT ATTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT A-TT ATT ATT
546675 A
1 A
546676 AATATATATA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
3 32 0.86
4 5 0.14
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:546645 original size:16 final size:16
Alignment explanation
Indices: 546626--546681 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
546616 TTTATAATAA
546626 TAATTATAATTATTAT
1 TAATTATAATTATTAT
546642 TAA-TATAATATATTAT
1 TAATTATAAT-TATTAT
*
546658 T-ATTATTATTTATTAT
1 TAATTA-TAATTATTAT
*
546674 TAAATATA
1 TAATTATA
546682 TATATATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
15 7 0.21
16 21 0.62
17 6 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TAATTATAATTATTAT
Found at i:546656 original size:19 final size:22
Alignment explanation
Indices: 546620--546665 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
546610 TAATTTTTTA
546620 TAATAATAATTATAATTATTAT
1 TAATAATAATTATAATTATTAT
*
546642 TAAT-ATAATATATTATTATTAT
1 TAATAATAAT-TATAATTATTAT
546664 TA
1 TA
546666 TTTATTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TAATAATAATTATAATTATTAT
Found at i:546679 original size:28 final size:28
Alignment explanation
Indices: 546618--546700 Score: 80
Period size: 28 Copynumber: 2.9 Consensus size: 28
546608 ATTAATTTTT
*
546618 TATAATA-ATAATTATAATTATTATTAA
1 TATAATATATTATTATAATTATTATTAA
* *
546645 TATAATATATTATTATTATTATTTATTAT
1 TATAATATATTATTATAATTA-TTATTAA
546674 TA-AATATATATATATATATATATATTA
1 TATAATATAT-TAT-TATA-AT-TATTA
546701 CAAATTACAT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
27 7 0.15
28 18 0.39
29 11 0.24
30 3 0.07
31 5 0.11
32 2 0.04
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (28 bp):
TATAATATATTATTATAATTATTATTAA
Found at i:547968 original size:15 final size:15
Alignment explanation
Indices: 547948--548018 Score: 56
Period size: 15 Copynumber: 4.6 Consensus size: 15
547938 ATCCAATAGT
547948 TTTTAATATTATTAC
1 TTTTAATATTATTAC
* *
547963 TTTTAAT-TTCTTTC
1 TTTTAATATTATTAC
547977 ATTTTAATTATTATTA-
1 -TTTTAA-TATTATTAC
*
547993 TTTTATTTTATTATTAC
1 TTTTA--ATATTATTAC
*
548010 TTTTGATAT
1 TTTTAATAT
548019 ATGTTTAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
14 5 0.12
15 21 0.49
16 9 0.21
17 8 0.19
ACGTcount: A:0.27, C:0.06, G:0.01, T:0.66
Consensus pattern (15 bp):
TTTTAATATTATTAC
Found at i:548058 original size:11 final size:11
Alignment explanation
Indices: 547983--548058 Score: 50
Period size: 11 Copynumber: 6.5 Consensus size: 11
547973 TTTCATTTTA
547983 ATTATTATTATT
1 ATTATT-TTATT
547995 -TTATTTTATT
1 ATTATTTTATT
548005 ATTACTTTTGA-T
1 ATTA-TTTT-ATT
548017 A-TATGTTTAAATT
1 ATTAT-TTT--ATT
* *
548030 ATTATCTTCATG
1 ATTAT-TTTATT
548042 ATTATTTTATT
1 ATTATTTTATT
548053 ATTATT
1 ATTATT
548059 ATTAAGTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
10 6 0.12
11 23 0.45
12 14 0.27
13 3 0.06
14 5 0.10
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:553098 original size:105 final size:106
Alignment explanation
Indices: 552916--553114 Score: 303
Period size: 105 Copynumber: 1.9 Consensus size: 106
552906 ACTGATTGAG
* * * *
552916 TTATCTCTCCCAATTGGTTGGATTAATGCATCCATGTCGGATGAAGAATCCCCAGCATGTCTGTG
1 TTATCTCGCCCAATTGGTTGGATTAATGCATCCAAGTCGGATGAAGAATCCCCACCAAGTCTGTG
552981 GTGACCATCCTCC-GGAGAATCAGAGAAGTCGTAATAATCA
66 GTGACCATCCTCCTGGAGAATCAGAGAAGTCGTAATAATCA
*
553021 TTATCTCGCCCAATTGGTTGGGTTAATGCATCCAAGTCAGG-TGAAGAATCCCCACCAAGTCTGT
1 TTATCTCGCCCAATTGGTTGGATTAATGCATCCAAGTC-GGATGAAGAATCCCCACCAAGTCTGT
*
553085 GGTGATCATCCTCCTTAGGAGAATCAGAGA
65 GGTGACCATCCTCC-T-GGAGAATCAGAGA
553115 TGTCATTATT
Statistics
Matches: 84, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
105 69 0.82
106 2 0.02
108 13 0.15
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (106 bp):
TTATCTCGCCCAATTGGTTGGATTAATGCATCCAAGTCGGATGAAGAATCCCCACCAAGTCTGTG
GTGACCATCCTCCTGGAGAATCAGAGAAGTCGTAATAATCA
Found at i:567693 original size:32 final size:33
Alignment explanation
Indices: 567657--567718 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
567647 GGGTCGGGTT
567657 GGGTTTTTT-AAGTGTGATATTCGAGTCGGATC
1 GGGTTTTTTAAAGTGTGATATTCGAGTCGGATC
*
567689 GGGTTTTTTAAAGTGTGATATTCGGGTCGG
1 GGGTTTTTTAAAGTGTGATATTCGAGTCGG
567719 GTTTAGGGCG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 9 0.32
33 19 0.68
ACGTcount: A:0.18, C:0.08, G:0.34, T:0.40
Consensus pattern (33 bp):
GGGTTTTTTAAAGTGTGATATTCGAGTCGGATC
Found at i:567782 original size:237 final size:236
Alignment explanation
Indices: 567472--567955 Score: 731
Period size: 237 Copynumber: 2.0 Consensus size: 236
567462 TCGGGTCGGG
* * * * * *
567472 TCGGGTTCGGGTTTAGGGTGAAAAAAACCGGACCGACCCGAAAATATATATAATTCATGTTGGGT
1 TCGGG-TCGGGTTTAGGGCGAAAAAAACCAGACCGACACGAAAATAAATATAATTCAGGTCGGGT
* * *
567537 CGGATTAAGTCGCTGTTTTTATTAAATAAAAATAATTTTTTATTATTTCGGGTCGGGT-T-GGAT
65 CAGATTAAGTCACTGTTTTTATTAAATAAAAAT-ATTTTTTATTATTTCGGGTCGGGTGTCAGAT
*
567600 TTCTAATTCATATATTCGGGTCGGGTCGGATGAAACTTTATTTT-TTCGGGTCGGGTTGGGTTTT
129 TTCTAATTCATATATTCGGGTCGGGTC--ATGAAACTTTATTTTGTTCGGGTCGGGTCGGGTTTT
567664 TTAAGTGTGATATTCGAGTCGGATCGGGTTTTTTAAAGTGTGATAT
192 TTAAGTGTGATATTCGAGTCGGATC-GGTTTTTTAAAGTGTGATAT
* *
567710 TCGGGTCGGGTTTAGGGCGAAAAAAATCAGACCGACACGAAAATAAATATAATTCGGGTCGGGTC
1 TCGGGTCGGGTTTAGGGCGAAAAAAACCAGACCGACACGAAAATAAATATAATTCAGGTCGGGTC
567775 AGATTAAGTCACTGTTTTTATTAAATAAAAATATTTTTTATTATTTCGGGTCGGGTCGGGTCAGA
66 AGATTAAGTCACTGTTTTTATTAAATAAAAATATTTTTTATTATTTCGGGTCGGGT---GTCAGA
567840 TTTCTAATTCATATATTCGGGTCGGGTCATGAAACTTTATTTTGTTCGGGTCGGGTCGGGTTTTT
128 TTTCTAATTCATATATTCGGGTCGGGTCATGAAACTTTATTTTGTTCGGGTCGGGTCGGGTTTTT
* * * *
567905 TAAGTGTGATGTTCGGGTCGGGTCGGTTTTTTTAAGTGTGATAT
193 TAAGTGTGATATTCGAGTCGGATCGGTTTTTTAAAGTGTGATAT
567949 TCGGGTC
1 TCGGGTC
567956 AAGTAGGGTC
Statistics
Matches: 224, Mismatches: 16, Indels: 11
0.89 0.06 0.04
Matches are distributed among these distances:
236 24 0.11
237 82 0.37
238 5 0.02
239 41 0.18
240 42 0.19
241 30 0.13
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.38
Consensus pattern (236 bp):
TCGGGTCGGGTTTAGGGCGAAAAAAACCAGACCGACACGAAAATAAATATAATTCAGGTCGGGTC
AGATTAAGTCACTGTTTTTATTAAATAAAAATATTTTTTATTATTTCGGGTCGGGTGTCAGATTT
CTAATTCATATATTCGGGTCGGGTCATGAAACTTTATTTTGTTCGGGTCGGGTCGGGTTTTTTAA
GTGTGATATTCGAGTCGGATCGGTTTTTTAAAGTGTGATAT
Found at i:567923 original size:32 final size:32
Alignment explanation
Indices: 567882--567955 Score: 130
Period size: 32 Copynumber: 2.3 Consensus size: 32
567872 AACTTTATTT
567882 TGTTCGGGTCGGGTCGGGTTTTTTAAGTGTGA
1 TGTTCGGGTCGGGTCGGGTTTTTTAAGTGTGA
*
567914 TGTTCGGGTCGGGTCGGTTTTTTTAAGTGTGA
1 TGTTCGGGTCGGGTCGGGTTTTTTAAGTGTGA
*
567946 TATTCGGGTC
1 TGTTCGGGTC
567956 AAGTAGGGTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.09, C:0.11, G:0.38, T:0.42
Consensus pattern (32 bp):
TGTTCGGGTCGGGTCGGGTTTTTTAAGTGTGA
Found at i:568534 original size:18 final size:16
Alignment explanation
Indices: 568491--568536 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 16
568481 ATATGAATTG
568491 GATTCCAATTCCTACA
1 GATTCCAATTCCTACA
*
568507 TATTCCAATTCCTTCACA
1 GATTCCAATTCC-T-ACA
*
568525 GATTCTAATTCC
1 GATTCCAATTCC
568537 CTCAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 11 0.44
17 1 0.04
18 13 0.52
ACGTcount: A:0.28, C:0.30, G:0.04, T:0.37
Consensus pattern (16 bp):
GATTCCAATTCCTACA
Found at i:577868 original size:34 final size:34
Alignment explanation
Indices: 577830--577896 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
577820 GATAAATTTA
* *
577830 TAATTTGAATCTTAAA-TATTTTTTCTTATGATTG
1 TAATTTGAATATTAAATTATTTTTT-TAATGATTG
577864 TAATTTGAATATTAAATTATTTTTTTAATGATT
1 TAATTTGAATATTAAATTATTTTTTTAATGATT
577897 TCGTATATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 22 0.73
35 8 0.27
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (34 bp):
TAATTTGAATATTAAATTATTTTTTTAATGATTG
Found at i:579941 original size:2 final size:2
Alignment explanation
Indices: 579936--579961 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
579926 TTTTAAAACA
579936 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
579962 GTTTTAAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:581082 original size:13 final size:13
Alignment explanation
Indices: 581066--581092 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
581056 TGATTTTCTC
581066 ATTATTAGGGGTG
1 ATTATTAGGGGTG
581079 ATTATTAGGGGTG
1 ATTATTAGGGGTG
581092 A
1 A
581093 GTAAAACTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (13 bp):
ATTATTAGGGGTG
Found at i:583139 original size:22 final size:22
Alignment explanation
Indices: 583111--583154 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
583101 CACTCTCTCA
583111 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
* *
583133 CCCATCTCTGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
583155 TATCTCCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.43, G:0.16, T:0.20
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:583465 original size:20 final size:20
Alignment explanation
Indices: 583416--583474 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
583406 TTTATTCTCT
* **
583416 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATTGTCATTTTCG
583436 CGTTGCGATTGTCATTTTCG
1 CGTTGCGATTGTCATTTTCG
* *
583456 TGTTGCGATTTTCATTTTC
1 CGTTGCGATTGTCATTTTC
583475 AGAAACTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44
Consensus pattern (20 bp):
CGTTGCGATTGTCATTTTCG
Found at i:584815 original size:18 final size:18
Alignment explanation
Indices: 584794--584841 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
584784 TCAACTTCGG
584794 GAGCCATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
584812 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
584830 GAGCCATCACCT
1 GAGCCATCACCT
584842 GATCGACCCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.27, C:0.46, G:0.12, T:0.15
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:585407 original size:20 final size:20
Alignment explanation
Indices: 585382--585427 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
585372 TAGTTTACTT
585382 TCGCAACACGAAAATGACTA
1 TCGCAACACGAAAATGACTA
** * *
585402 TCGCAATGCGGAAATGGCTA
1 TCGCAACACGAAAATGACTA
585422 TCGCAA
1 TCGCAA
585428 TGCGAAATGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (20 bp):
TCGCAACACGAAAATGACTA
Found at i:585436 original size:19 final size:20
Alignment explanation
Indices: 585393--585448 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
585383 CGCAACACGA
585393 AAATGACTATCGCAATGCGG
1 AAATGACTATCGCAATGCGG
*
585413 AAATGGCTATCGCAATGC-G
1 AAATGACTATCGCAATGCGG
**
585432 AAATGAAAATCGCAATG
1 AAATGACTATCGCAATG
585449 ACAAAATCGT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (20 bp):
AAATGACTATCGCAATGCGG
Found at i:585468 original size:33 final size:33
Alignment explanation
Indices: 585421--585514 Score: 152
Period size: 33 Copynumber: 2.8 Consensus size: 33
585411 GGAAATGGCT
585421 ATCGCAATGCGAAATGAAAATCGCAATGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAATGACAAA
* * *
585454 ATCGTAATGCGAAATGAAAATCGCAACGCCAAA
1 ATCGCAATGCGAAATGAAAATCGCAATGACAAA
*
585487 ATCGCAACGCGAAATGAAAATCGCAATG
1 ATCGCAATGCGAAATGAAAATCGCAATG
585515 CGATTTGTGT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.46, C:0.20, G:0.19, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAATGACAAA
Found at i:585489 original size:14 final size:14
Alignment explanation
Indices: 585470--585496 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
585460 ATGCGAAATG
585470 AAAATCGCAACGCC
1 AAAATCGCAACGCC
585484 AAAATCGCAACGC
1 AAAATCGCAACGC
585497 GAAATGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.33, G:0.15, T:0.07
Consensus pattern (14 bp):
AAAATCGCAACGCC
Found at i:585508 original size:19 final size:19
Alignment explanation
Indices: 585451--585517 Score: 63
Period size: 19 Copynumber: 3.8 Consensus size: 19
585441 TCGCAATGAC
* *
585451 AAAATCGTAATGCGAAATG
1 AAAATCGCAACGCGAAATG
*
585470 AAAATCGCAACGC-----C
1 AAAATCGCAACGCGAAATG
585484 AAAATCGCAACGCGAAATG
1 AAAATCGCAACGCGAAATG
*
585503 AAAATCGCAATGCGA
1 AAAATCGCAACGCGA
585518 TTTGTGTTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
14 13 0.34
19 25 0.66
ACGTcount: A:0.46, C:0.21, G:0.19, T:0.13
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATG
Found at i:585548 original size:14 final size:14
Alignment explanation
Indices: 585529--585620 Score: 67
Period size: 14 Copynumber: 5.9 Consensus size: 14
585519 TTGTGTTTCG
585529 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
585543 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
585560 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
*
585576 CGTTGCGATTTTTATTT
1 CGTTGCGA--TTT-TGT
*
585593 CGCATTGTGATTTTGT
1 CG--TTGCGATTTTGT
585609 CGTTGCGATTTT
1 CGTTGCGATTTT
585621 CATTTCGCAT
Statistics
Matches: 62, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
14 23 0.37
15 3 0.05
16 11 0.18
17 11 0.18
18 3 0.05
19 11 0.18
ACGTcount: A:0.11, C:0.15, G:0.23, T:0.51
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:585561 original size:33 final size:33
Alignment explanation
Indices: 585524--585636 Score: 190
Period size: 33 Copynumber: 3.4 Consensus size: 33
585514 GCGATTTGTG
*
585524 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
*
585557 TTTCGCATTGCGATTTTGTCGTTGCGATTTTTA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
*
585590 TTTCGCATTGTGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
*
585623 TTTCGCATCGCGAT
1 TTTCGCATTGCGAT
585637 AGCCATTTCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
33 74 1.00
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.49
Consensus pattern (33 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
Found at i:585569 original size:19 final size:18
Alignment explanation
Indices: 585507--585636 Score: 68
Period size: 19 Copynumber: 7.7 Consensus size: 18
585497 GAAATGAAAA
* *
585507 TCGCAATGCGATTTGTGTT
1 TCGCATTGCGATTT-TATT
* *
585526 TCGCGTTGCGA-TTT-TG
1 TCGCATTGCGATTTTATT
585542 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTT-ATT
*
585559 TCGCATTGCGA-TTT-TG
1 TCGCATTGCGATTTTATT
585575 TCG--TTGCGATTTTTATT
1 TCGCATTGCGA-TTTTATT
* *
585592 TCGCATTGTGA-TTT-TG
1 TCGCATTGCGATTTTATT
585608 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTT-ATT
*
585625 TCGCATCGCGAT
1 TCGCATTGCGAT
585637 AGCCATTTCC
Statistics
Matches: 85, Mismatches: 11, Indels: 30
0.67 0.09 0.24
Matches are distributed among these distances:
14 17 0.20
15 6 0.07
16 15 0.18
17 16 0.19
18 5 0.06
19 26 0.31
ACGTcount: A:0.12, C:0.18, G:0.23, T:0.47
Consensus pattern (18 bp):
TCGCATTGCGATTTTATT
Found at i:585643 original size:19 final size:19
Alignment explanation
Indices: 585621--585665 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
585611 TTGCGATTTT
585621 CATTTCGCATCGCGATAGC
1 CATTTCGCATCGCGATAGC
* *
585640 CATTTCCGCGTTGCGATAGC
1 CATTT-CGCATCGCGATAGC
585660 CATTTC
1 CATTTC
585666 CGCGTTGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.18, C:0.31, G:0.20, T:0.31
Consensus pattern (19 bp):
CATTTCGCATCGCGATAGC
Found at i:585657 original size:20 final size:20
Alignment explanation
Indices: 585632--585695 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
585622 ATTTCGCATC
585632 GCGATAGCCATTTCCGCGTT
1 GCGATAGCCATTTCCGCGTT
585652 GCGATAGCCATTTCCGCGTT
1 GCGATAGCCATTTCCGCGTT
* * *
585672 GTGATAGTCATTTTCGCGTT
1 GCGATAGCCATTTCCGCGTT
585692 GCGA
1 GCGA
585696 AAGTAAGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.16, C:0.25, G:0.27, T:0.33
Consensus pattern (20 bp):
GCGATAGCCATTTCCGCGTT
Found at i:585706 original size:20 final size:20
Alignment explanation
Indices: 585683--585721 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
585673 TGATAGTCAT
585683 TTTCGCGTTGCGAAAGTAAG
1 TTTCGCGTTGCGAAAGTAAG
*
585703 TTTCGTGTTGCGAAAGTAA
1 TTTCGCGTTGCGAAAGTAA
585722 ACTATTCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (20 bp):
TTTCGCGTTGCGAAAGTAAG
Found at i:586095 original size:21 final size:20
Alignment explanation
Indices: 586069--586136 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 20
586059 CTGTCATCCC
586069 TCAAGAGTCCCCTCCAATCGT
1 TCAAGAGTCCCCTCC-ATCGT
* * **
586090 TCAAGAGGCCCCTATCATCCC
1 TCAAGAGTCCCCT-CCATCGT
*
586111 TCAAGAGTCCCC-CCACCGT
1 TCAAGAGTCCCCTCCATCGT
586130 TCAAGAG
1 TCAAGAG
586137 GCCACTGTCA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
19 10 0.27
21 26 0.70
22 1 0.03
ACGTcount: A:0.25, C:0.40, G:0.16, T:0.19
Consensus pattern (20 bp):
TCAAGAGTCCCCTCCATCGT
Found at i:586148 original size:40 final size:42
Alignment explanation
Indices: 586059--586148 Score: 139
Period size: 40 Copynumber: 2.2 Consensus size: 42
586049 CCCGACTCAC
* *
586059 CTGTCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCC
1 CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
*
586101 CTATCATCCCTCAAGAGTCCCC-CC-ACCGTTCAAGAGGCCA
1 CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
586141 CTGTCATC
1 CTGTCATC
586149 GTTGAAGAGG
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
40 21 0.48
41 2 0.05
42 21 0.48
ACGTcount: A:0.22, C:0.41, G:0.16, T:0.21
Consensus pattern (42 bp):
CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
Found at i:587660 original size:20 final size:20
Alignment explanation
Indices: 587645--587728 Score: 114
Period size: 20 Copynumber: 4.2 Consensus size: 20
587635 ATTGCGATTT
587645 TCAGAATCTCATTGCGAAAG
1 TCAGAATCTCATTGCGAAAG
*
587665 TCAGAATCTCATTGAGAAAG
1 TCAGAATCTCATTGCGAAAG
* *
587685 TCAGAATCGCGTTGCGAAAG
1 TCAGAATCTCATTGCGAAAG
* * *
587705 TCAGTATCGCGTTGCGAAAG
1 TCAGAATCTCATTGCGAAAG
587725 TCAG
1 TCAG
587729 TATCGCGTTG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (20 bp):
TCAGAATCTCATTGCGAAAG
Found at i:587729 original size:20 final size:20
Alignment explanation
Indices: 587656--587782 Score: 139
Period size: 20 Copynumber: 6.3 Consensus size: 20
587646 CAGAATCTCA
* * *
587656 TTGCGAAAGTCAGAATCTCA
1 TTGCGAAAGTCAGTATCGCG
* *
587676 TTGAGAAAGTCAGAATCGCG
1 TTGCGAAAGTCAGTATCGCG
587696 TTGCGAAAGTCAGTATCGCG
1 TTGCGAAAGTCAGTATCGCG
587716 TTGCGAAAGTCAGTATCGCG
1 TTGCGAAAGTCAGTATCGCG
** *
587736 TTGCGATTTTGT-ATTATCGCG
1 TTGCGA--AAGTCAGTATCGCG
* *
587757 TTGCGATAGTCAGTATCGCA
1 TTGCGAAAGTCAGTATCGCG
587777 TTGCGA
1 TTGCGA
587783 TTTTCCAAAT
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
19 3 0.03
20 74 0.80
21 14 0.15
22 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (20 bp):
TTGCGAAAGTCAGTATCGCG
Found at i:587768 original size:41 final size:41
Alignment explanation
Indices: 587709--587786 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
587699 CGAAAGTCAG
*
587709 TATCGCGTTGCGAAAGTCAGTATCGCGTTGCGATTTTGTAT
1 TATCGCGTTGCGAAAGTCAGTATCGCATTGCGATTTTGTAT
*
587750 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTT
1 TATCGCGTTGCGAAAGTCAGTATCGCATTGCGATTTT
587787 CCAAATTCGC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.37
Consensus pattern (41 bp):
TATCGCGTTGCGAAAGTCAGTATCGCATTGCGATTTTGTAT
Found at i:587802 original size:41 final size:41
Alignment explanation
Indices: 587709--587804 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 41
587699 CGAAAGTCAG
* * ** *
587709 TATCGCGTTGCGAAAGTCAGTATCGCGTTGCGATTTTGTAT
1 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCAAA
587750 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCCAAA
1 TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTT-CAAA
*
587792 T-TCGCATTGCGAT
1 TATCGCGTTGCGAT
587805 TTACTTATTC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 46 0.96
42 2 0.04
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (41 bp):
TATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCAAA
Found at i:587816 original size:20 final size:21
Alignment explanation
Indices: 587772--587823 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
587762 ATAGTCAGTA
*
587772 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
**
587793 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
587813 TCGCATTGCGA
1 TCGCATTGCGA
587824 ATTGGGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:587867 original size:20 final size:20
Alignment explanation
Indices: 587834--587939 Score: 140
Period size: 20 Copynumber: 5.3 Consensus size: 20
587824 ATTGGGAAAA
* *
587834 TCGCAACGCTATACTTACTT
1 TCGCAACGCGATACTGACTT
*
587854 TCGTAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
*
587874 TCGCAACGCGATTCTGACTT
1 TCGCAACGCGATACTGACTT
*
587894 TCGCAACGCGATTCTGACTT
1 TCGCAACGCGATACTGACTT
* * *
587914 TCGCAACGAGATTCTGACTA
1 TCGCAACGCGATACTGACTT
587934 TCGCAA
1 TCGCAA
587940 TGAGATAATA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 79 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:588119 original size:12 final size:12
Alignment explanation
Indices: 588100--588133 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
588090 CTCTCCGGCG
588100 ACATCCGTTCCT
1 ACATCCGTTCCT
*
588112 ATATCCGTTCCT
1 ACATCCGTTCCT
588124 ACATCC-TTCC
1 ACATCCGTTCC
588134 CCATCCGGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (12 bp):
ACATCCGTTCCT
Found at i:588714 original size:24 final size:24
Alignment explanation
Indices: 588687--588740 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
588677 GTATTCAAAA
*
588687 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCGGAC
* *
588711 TTTGATATTGGTCAATACTCGGAT
1 TTTGATATTGGTCAATACCCGGAC
588735 TTTGAT
1 TTTGAT
588741 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCGGAC
Found at i:588926 original size:12 final size:12
Alignment explanation
Indices: 588909--588933 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
588899 ATATAATCCT
588909 GAAGAAGAAAAA
1 GAAGAAGAAAAA
588921 GAAGAAGAAAAA
1 GAAGAAGAAAAA
588933 G
1 G
588934 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:597797 original size:7 final size:7
Alignment explanation
Indices: 597785--597935 Score: 274
Period size: 7 Copynumber: 22.1 Consensus size: 7
597775 GAACAATGGA
597785 GCTCGGG
1 GCTCGGG
597792 GCTCGGG
1 GCTCGGG
597799 GCTCGGG
1 GCTCGGG
597806 GCTCGGG
1 GCTCGGG
597813 GCTCGGG
1 GCTCGGG
597820 GCTCGGG
1 GCTCGGG
597827 GCTCGGG
1 GCTCGGG
597834 GCTC-GG
1 GCTCGGG
597840 GCTC-GG
1 GCTCGGG
597846 GCTCGGG
1 GCTCGGG
597853 GCTCGGG
1 GCTCGGG
597860 GCTCGGG
1 GCTCGGG
597867 GCTCGGG
1 GCTCGGG
597874 GCTCGGG
1 GCTCGGG
597881 GCTC-GG
1 GCTCGGG
597887 GCTCGGG
1 GCTCGGG
597894 GCTC-GG
1 GCTCGGG
597900 GCTCGGG
1 GCTCGGG
597907 GCTCGGG
1 GCTCGGG
597914 GCTCGGG
1 GCTCGGG
597921 GCTCGGG
1 GCTCGGG
597928 GCTCGGG
1 GCTCGGG
597935 G
1 G
597936 TCTAGGGTCT
Statistics
Matches: 141, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
6 24 0.17
7 117 0.83
ACGTcount: A:0.00, C:0.29, G:0.56, T:0.15
Consensus pattern (7 bp):
GCTCGGG
Found at i:597862 original size:54 final size:54
Alignment explanation
Indices: 597785--597935 Score: 277
Period size: 54 Copynumber: 2.8 Consensus size: 54
597775 GAACAATGGA
597785 GCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTC-GG
1 GCTC-GGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTC-GGGCTCGGG
597840 GCTCGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGCTCGGG
1 GCTCGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGCTCGGG
597894 GCTCGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGG
1 GCTCGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGG
597936 TCTAGGGTCT
Statistics
Matches: 95, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
53 6 0.06
54 85 0.89
55 4 0.04
ACGTcount: A:0.00, C:0.29, G:0.56, T:0.15
Consensus pattern (54 bp):
GCTCGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGGCTCGGGCTCGGG
Found at i:603261 original size:17 final size:17
Alignment explanation
Indices: 603239--603272 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
603229 TTTGGGTTTC
603239 GGGTTTAGGGGTTAGGG
1 GGGTTTAGGGGTTAGGG
*
603256 GGGTTTAGGGTTTAGGG
1 GGGTTTAGGGGTTAGGG
603273 TTTAGGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.56, T:0.32
Consensus pattern (17 bp):
GGGTTTAGGGGTTAGGG
Found at i:604573 original size:7 final size:7
Alignment explanation
Indices: 597933--604560 Score: 10192
Period size: 7 Copynumber: 969.9 Consensus size: 7
597923 TCGGGGCTCG
*
597933 GGGTCTA
1 GGGTTTA
*
597940 GGGTCTA
1 GGGTTTA
*
597947 GGGTCTA
1 GGGTTTA
*
597954 GGGTCTA
1 GGGTTTA
*
597961 GGGTCTA
1 GGGTTTA
*
597968 GGGTCTA
1 GGGTTTA
*
597975 GGGTCTA
1 GGGTTTA
*
597982 GGGTCTA
1 GGGTTTA
*
597989 GGGTCTA
1 GGGTTTA
*
597996 GGGTCTA
1 GGGTTTA
*
598003 GGGTCTA
1 GGGTTTA
*
598010 GGGTCTA
1 GGGTTTA
*
598017 GGGTCTA
1 GGGTTTA
*
598024 GGGTCTA
1 GGGTTTA
*
598031 GGGTCTA
1 GGGTTTA
*
598038 GGGTCTA
1 GGGTTTA
*
598045 GGGTCTA
1 GGGTTTA
*
598052 GGGTCTA
1 GGGTTTA
*
598059 GGGTCTA
1 GGGTTTA
*
598066 GGGTTGA
1 GGGTTTA
*
598073 GGGTTGA
1 GGGTTTA
*
598080 GGGTTGA
1 GGGTTTA
*
598087 GGGTTGA
1 GGGTTTA
*
598094 GGGTTGA
1 GGGTTTA
*
598101 GGGTTGA
1 GGGTTTA
*
598108 GGGTTGA
1 GGGTTTA
*
598115 GGGTTGA
1 GGGTTTA
*
598122 GGGTTGA
1 GGGTTTA
*
598129 GGGTTGA
1 GGGTTTA
*
598136 GGGTTGA
1 GGGTTTA
*
598143 GGGTTGA
1 GGGTTTA
598150 GGGTTTA
1 GGGTTTA
598157 GGGTTTA
1 GGGTTTA
598164 GGGTTTA
1 GGGTTTA
598171 GGGTTTA
1 GGGTTTA
598178 GGGTTTA
1 GGGTTTA
598185 GGGTTTA
1 GGGTTTA
598192 GGGTTTA
1 GGGTTTA
598199 GGGTTTA
1 GGGTTTA
598206 GGGTTTA
1 GGGTTTA
598213 GGGTTTA
1 GGGTTTA
598220 GGGTTTA
1 GGGTTTA
598227 GGGTTTA
1 GGGTTTA
598234 GGGTTTA
1 GGGTTTA
598241 GGGTTTA
1 GGGTTTA
598248 GGGTTTA
1 GGGTTTA
598255 GGGTTTA
1 GGGTTTA
598262 GGGTTTA
1 GGGTTTA
598269 GGGTTTA
1 GGGTTTA
598276 GGGTTTA
1 GGGTTTA
598283 GGGTTTA
1 GGGTTTA
598290 GGGTTTA
1 GGGTTTA
598297 GGGTTTA
1 GGGTTTA
598304 GGGTTTA
1 GGGTTTA
598311 GGGTTTA
1 GGGTTTA
598318 GGGTTTA
1 GGGTTTA
598325 GGGTTTA
1 GGGTTTA
598332 GGGTTTA
1 GGGTTTA
598339 GGGTTTA
1 GGGTTTA
598346 GGGTTTA
1 GGGTTTA
598353 GGGTTTA
1 GGGTTTA
598360 GGGTTTA
1 GGGTTTA
598367 GGGTTTA
1 GGGTTTA
598374 GGGTTTA
1 GGGTTTA
598381 GGGTTTA
1 GGGTTTA
598388 GGGTTTA
1 GGGTTTA
598395 GGGTTTA
1 GGGTTTA
598402 GGG-TTA
1 GGGTTTA
598408 -GGTTTA
1 GGGTTTA
598414 GGG-TTA
1 GGGTTTA
598420 GGGTTTA
1 GGGTTTA
598427 GGGTTTA
1 GGGTTTA
598434 GGGTTTA
1 GGGTTTA
598441 GGGTTTA
1 GGGTTTA
598448 GGGTTTA
1 GGGTTTA
598455 GGGTTTA
1 GGGTTTA
598462 GGGTTTA
1 GGGTTTA
598469 GGGTTTA
1 GGGTTTA
598476 GGGTTTA
1 GGGTTTA
598483 GGGTTTA
1 GGGTTTA
598490 GGGTTTA
1 GGGTTTA
598497 GGGTTTA
1 GGGTTTA
598504 GGGTTTA
1 GGGTTTA
598511 GGGTTTA
1 GGGTTTA
598518 GGGTTTA
1 GGGTTTA
598525 GGGTTTA
1 GGGTTTA
598532 GGGTTTA
1 GGGTTTA
598539 GGGTTTA
1 GGGTTTA
598546 GGGTTTA
1 GGGTTTA
598553 GGGTTTA
1 GGGTTTA
598560 GGGTTTTTTA
1 GGG---TTTA
598570 GGGTTTA
1 GGGTTTA
598577 GGGTTTA
1 GGGTTTA
598584 GGGTTTA
1 GGGTTTA
598591 GGGTTTA
1 GGGTTTA
598598 GGGTTTA
1 GGGTTTA
598605 GGGTTTA
1 GGGTTTA
598612 GGG-TTA
1 GGGTTTA
598618 GGGTTTA
1 GGGTTTA
598625 GGG-TTA
1 GGGTTTA
598631 GGGTTTA
1 GGGTTTA
598638 GGGTTTA
1 GGGTTTA
598645 GGGTTTA
1 GGGTTTA
598652 GGG-TTA
1 GGGTTTA
598658 GGGTTTA
1 GGGTTTA
598665 GGGTTTA
1 GGGTTTA
598672 GGGTTTA
1 GGGTTTA
598679 GGGTTTA
1 GGGTTTA
598686 GGGTTTA
1 GGGTTTA
598693 GGGTTTA
1 GGGTTTA
598700 GGGTTTA
1 GGGTTTA
598707 GGGTTTA
1 GGGTTTA
598714 GGGTTTA
1 GGGTTTA
598721 GGGTTTA
1 GGGTTTA
598728 GGGTTTA
1 GGGTTTA
598735 GGGTTTA
1 GGGTTTA
598742 -GGTTTA
1 GGGTTTA
598748 GGGTTTA
1 GGGTTTA
598755 GGGTTTA
1 GGGTTTA
598762 GGGTTTA
1 GGGTTTA
598769 GGGTTTA
1 GGGTTTA
598776 GGGTTTA
1 GGGTTTA
598783 GGGTTTA
1 GGGTTTA
598790 GGGTTTA
1 GGGTTTA
598797 -GGTTTA
1 GGGTTTA
598803 GGGTTTA
1 GGGTTTA
598810 GGGTTTA
1 GGGTTTA
598817 GGGTTTA
1 GGGTTTA
598824 GGG-TTA
1 GGGTTTA
598830 GGG-TTA
1 GGGTTTA
598836 -GGTTTA
1 GGGTTTA
598842 GGGTTTA
1 GGGTTTA
598849 GGGTTTA
1 GGGTTTA
598856 GGGTTTA
1 GGGTTTA
598863 GGGTTTA
1 GGGTTTA
598870 GGGTTTA
1 GGGTTTA
598877 GGGTTTA
1 GGGTTTA
598884 GGGTTTA
1 GGGTTTA
598891 GGGTTTA
1 GGGTTTA
598898 GGGTTTA
1 GGGTTTA
598905 GGGTTT-
1 GGGTTTA
598911 GGG-TTA
1 GGGTTTA
598917 GGGTTTA
1 GGGTTTA
598924 GGGTTTA
1 GGGTTTA
598931 GGGTTTA
1 GGGTTTA
598938 GGGTTTA
1 GGGTTTA
598945 GGGTTTA
1 GGGTTTA
598952 GGGTTTA
1 GGGTTTA
598959 GGGTTTA
1 GGGTTTA
598966 GGGTTTA
1 GGGTTTA
598973 GGGTTTA
1 GGGTTTA
598980 GGGTTTA
1 GGGTTTA
598987 GGGTTTA
1 GGGTTTA
598994 GGGTTTA
1 GGGTTTA
599001 GGGTTTA
1 GGGTTTA
599008 GGGTTTA
1 GGGTTTA
599015 GGGTTTA
1 GGGTTTA
599022 GGGTTTA
1 GGGTTTA
599029 GGGTTTA
1 GGGTTTA
599036 GGGTTTA
1 GGGTTTA
599043 GGGTTTA
1 GGGTTTA
599050 GGGTTTA
1 GGGTTTA
599057 GGGTTTA
1 GGGTTTA
599064 GGGTTTA
1 GGGTTTA
599071 GGGTTTA
1 GGGTTTA
599078 GGGTTTA
1 GGGTTTA
599085 GGGTTTA
1 GGGTTTA
599092 -GGTTTA
1 GGGTTTA
599098 GGGTTTA
1 GGGTTTA
599105 GGGTTTA
1 GGGTTTA
599112 GGGTTTA
1 GGGTTTA
599119 -GGTTTA
1 GGGTTTA
599125 GGGTTTA
1 GGGTTTA
599132 GGGTTTA
1 GGGTTTA
599139 GGG-TTA
1 GGGTTTA
599145 GGGTTTA
1 GGGTTTA
599152 GGG-TTA
1 GGGTTTA
599158 GGGTTTA
1 GGGTTTA
599165 GGGTTTA
1 GGGTTTA
599172 GGGTTTA
1 GGGTTTA
599179 GGGTTTA
1 GGGTTTA
599186 GGGTTTA
1 GGGTTTA
599193 GGGTTTA
1 GGGTTTA
599200 GGGTTTA
1 GGGTTTA
599207 GGG-TTA
1 GGGTTTA
599213 GGGTTTA
1 GGGTTTA
599220 GGG-TTA
1 GGGTTTA
599226 GGGTTTA
1 GGGTTTA
599233 GGGTTTA
1 GGGTTTA
599240 GGGTTTA
1 GGGTTTA
599247 GGGTTTA
1 GGGTTTA
599254 GGGTTTA
1 GGGTTTA
599261 GGGTTTA
1 GGGTTTA
599268 GGGTTTA
1 GGGTTTA
599275 GGG-TTA
1 GGGTTTA
599281 GGGTTTA
1 GGGTTTA
599288 GGGTTTA
1 GGGTTTA
599295 GGGTTTA
1 GGGTTTA
599302 GGGTTTA
1 GGGTTTA
599309 GGG-TTA
1 GGGTTTA
599315 GGGTTTA
1 GGGTTTA
599322 GGGTTTA
1 GGGTTTA
599329 GGGTTTA
1 GGGTTTA
599336 GGGTTTA
1 GGGTTTA
599343 GGGTTTA
1 GGGTTTA
599350 GGGTTTA
1 GGGTTTA
599357 GGG-TTA
1 GGGTTTA
599363 GGGTTTA
1 GGGTTTA
599370 GGGTTTA
1 GGGTTTA
599377 GGGTTTA
1 GGGTTTA
599384 GGGTTTA
1 GGGTTTA
599391 GGGTTTA
1 GGGTTTA
599398 GGGTTTA
1 GGGTTTA
599405 GGGTTTA
1 GGGTTTA
599412 GGGTTTA
1 GGGTTTA
599419 GGGTTTA
1 GGGTTTA
599426 GGGTTTA
1 GGGTTTA
599433 GGGTTTA
1 GGGTTTA
599440 GGGTTTA
1 GGGTTTA
599447 GGGTTTA
1 GGGTTTA
599454 GGGTTTA
1 GGGTTTA
599461 GGGTTTA
1 GGGTTTA
599468 GGGTTTA
1 GGGTTTA
599475 GGGTTTA
1 GGGTTTA
599482 GGGTTTA
1 GGGTTTA
599489 GGGTTTA
1 GGGTTTA
599496 GGGTTTA
1 GGGTTTA
599503 GGGTTTA
1 GGGTTTA
599510 GGGTTTA
1 GGGTTTA
599517 GGGTTTA
1 GGGTTTA
599524 GGG-TTA
1 GGGTTTA
599530 GGGTTTA
1 GGGTTTA
599537 GGGTTTA
1 GGGTTTA
599544 GGGTTTA
1 GGGTTTA
599551 GGGTTTA
1 GGGTTTA
599558 GGGTTTA
1 GGGTTTA
599565 GGGTTTA
1 GGGTTTA
599572 GGGTTTA
1 GGGTTTA
599579 GGGTTTA
1 GGGTTTA
599586 GGGTTTA
1 GGGTTTA
599593 GGGTTTA
1 GGGTTTA
599600 GGGTTTA
1 GGGTTTA
599607 GGGTTTA
1 GGGTTTA
599614 GGGTTTA
1 GGGTTTA
599621 GGGTTTA
1 GGGTTTA
599628 GGGTTTA
1 GGGTTTA
599635 GGGTTTA
1 GGGTTTA
599642 -GGTTTA
1 GGGTTTA
599648 GGGTTTA
1 GGGTTTA
599655 GGGTTTA
1 GGGTTTA
599662 GGGTTTA
1 GGGTTTA
599669 GGGTTTA
1 GGGTTTA
599676 GGGTTTA
1 GGGTTTA
599683 GGGTTTA
1 GGGTTTA
599690 GGGTTTA
1 GGGTTTA
599697 GGGTTTA
1 GGGTTTA
599704 GGGTTTA
1 GGGTTTA
599711 GGGGGGTTTA
1 ---GGGTTTA
599721 GGGTTTA
1 GGGTTTA
599728 GGGTTTA
1 GGGTTTA
599735 GGGTTTA
1 GGGTTTA
599742 GGGTTTA
1 GGGTTTA
599749 GGGTTTA
1 GGGTTTA
599756 GGGTTTA
1 GGGTTTA
599763 GGGTTTA
1 GGGTTTA
599770 GGG-TTA
1 GGGTTTA
599776 GGGTTTA
1 GGGTTTA
599783 GGGTTTA
1 GGGTTTA
599790 GGGTTTA
1 GGGTTTA
599797 GGGTTTA
1 GGGTTTA
599804 GGGTTTA
1 GGGTTTA
599811 GGG-TTA
1 GGGTTTA
599817 GGGTTTA
1 GGGTTTA
599824 GGGTTTA
1 GGGTTTA
599831 -GGTTTA
1 GGGTTTA
599837 GGGTTTA
1 GGGTTTA
599844 -GGTTTA
1 GGGTTTA
599850 GGGTTTA
1 GGGTTTA
599857 GGGTTGGGTA
1 GGGTT---TA
599867 GGGTTTA
1 GGGTTTA
599874 GGGTTTA
1 GGGTTTA
599881 GGGTTTA
1 GGGTTTA
599888 GGGTTTA
1 GGGTTTA
599895 GGGTTTA
1 GGGTTTA
599902 GGGTTTA
1 GGGTTTA
599909 GGGTTTA
1 GGGTTTA
599916 GGG-TTA
1 GGGTTTA
599922 GGGTTTA
1 GGGTTTA
599929 GGGTTTA
1 GGGTTTA
599936 GGGTTTA
1 GGGTTTA
599943 GGGTTTA
1 GGGTTTA
599950 GGGTTTA
1 GGGTTTA
599957 GGGTTTA
1 GGGTTTA
599964 GGG-TTA
1 GGGTTTA
599970 GGGTTTA
1 GGGTTTA
599977 GGG-TTA
1 GGGTTTA
599983 GGGTTTA
1 GGGTTTA
599990 GGGTTTA
1 GGGTTTA
599997 GGGTTTA
1 GGGTTTA
600004 GGGTTTA
1 GGGTTTA
600011 GGGTTTA
1 GGGTTTA
600018 GGG-TTA
1 GGGTTTA
600024 GGGTTTA
1 GGGTTTA
600031 -GGTTTA
1 GGGTTTA
600037 GGGTTTA
1 GGGTTTA
600044 GGGTTTA
1 GGGTTTA
600051 GGG-TTA
1 GGGTTTA
600057 GGG-TTA
1 GGGTTTA
600063 GGGTTTA
1 GGGTTTA
600070 GGGTTTA
1 GGGTTTA
600077 GGGTTTA
1 GGGTTTA
600084 GGGTTTA
1 GGGTTTA
600091 GGGTTTA
1 GGGTTTA
600098 GGGTTTA
1 GGGTTTA
600105 GGGTTTA
1 GGGTTTA
600112 GGG-TTA
1 GGGTTTA
600118 GGGTTTA
1 GGGTTTA
600125 GGGTTTA
1 GGGTTTA
600132 GGGTTTA
1 GGGTTTA
600139 GGGTTTA
1 GGGTTTA
600146 GGGTTTA
1 GGGTTTA
600153 GGGTTTA
1 GGGTTTA
600160 GGGTTTA
1 GGGTTTA
600167 GGGTTTA
1 GGGTTTA
600174 GGGTTTA
1 GGGTTTA
600181 GGGTTTA
1 GGGTTTA
600188 GGGTTTA
1 GGGTTTA
600195 GGGTTTA
1 GGGTTTA
600202 GGGTTTA
1 GGGTTTA
600209 GGGTTTA
1 GGGTTTA
600216 GGGTTTA
1 GGGTTTA
600223 -GGTTTA
1 GGGTTTA
600229 GGGTTTA
1 GGGTTTA
600236 GGGTTTA
1 GGGTTTA
600243 GGGTTTA
1 GGGTTTA
600250 GGGTTTA
1 GGGTTTA
600257 GGGTTTA
1 GGGTTTA
600264 GGGTTTA
1 GGGTTTA
600271 GGGTTTA
1 GGGTTTA
600278 GGGTTTA
1 GGGTTTA
600285 GGGTTTA
1 GGGTTTA
600292 GGGTTTA
1 GGGTTTA
600299 GGGTTTA
1 GGGTTTA
600306 GGGTTTA
1 GGGTTTA
600313 GGGTTTA
1 GGGTTTA
600320 GGGTTTA
1 GGGTTTA
600327 GGGGTTTA
1 -GGGTTTA
600335 GGGTTTA
1 GGGTTTA
600342 GGGTTTA
1 GGGTTTA
600349 GGG-TTA
1 GGGTTTA
600355 -GG-TTA
1 GGGTTTA
600360 GGGTTTA
1 GGGTTTA
600367 GGGTTTA
1 GGGTTTA
600374 GGGTTTA
1 GGGTTTA
600381 GGGTTTA
1 GGGTTTA
600388 GGGTTTA
1 GGGTTTA
600395 GGGTTTA
1 GGGTTTA
600402 GGG-TTA
1 GGGTTTA
600408 GGGTTTA
1 GGGTTTA
600415 GGGTTTA
1 GGGTTTA
600422 GGGTTTA
1 GGGTTTA
600429 GGGTTTA
1 GGGTTTA
600436 GGGTTTA
1 GGGTTTA
600443 GGGTTTA
1 GGGTTTA
600450 GGGTTTA
1 GGGTTTA
600457 GGGTTTA
1 GGGTTTA
600464 GGGTTTA
1 GGGTTTA
600471 GGGTTTA
1 GGGTTTA
600478 GGGTTT-
1 GGGTTTA
600484 GGG--TA
1 GGGTTTA
600489 GGGTTTA
1 GGGTTTA
600496 GGGTTTA
1 GGGTTTA
600503 GGG-TTA
1 GGGTTTA
600509 GGGTTTA
1 GGGTTTA
600516 GGGTTTA
1 GGGTTTA
600523 GGGTTTA
1 GGGTTTA
600530 -GGTTTA
1 GGGTTTA
600536 GGGTTTA
1 GGGTTTA
600543 GGGTTTA
1 GGGTTTA
600550 GGGTTTA
1 GGGTTTA
600557 GGG-TTA
1 GGGTTTA
600563 GGGTTTA
1 GGGTTTA
600570 GGG-TTA
1 GGGTTTA
600576 GGGTTTA
1 GGGTTTA
600583 GGGTTTA
1 GGGTTTA
600590 GGGTTTA
1 GGGTTTA
600597 GGGTTTA
1 GGGTTTA
600604 GGG-TTA
1 GGGTTTA
600610 GGGTTTA
1 GGGTTTA
600617 GGGTTTA
1 GGGTTTA
600624 GGGTTTA
1 GGGTTTA
600631 GGGTTTA
1 GGGTTTA
600638 GGG-TTA
1 GGGTTTA
600644 -GGTTTA
1 GGGTTTA
600650 GGGTTTA
1 GGGTTTA
600657 GGGTTTA
1 GGGTTTA
600664 GGG-TTA
1 GGGTTTA
600670 GGGTTTA
1 GGGTTTA
600677 GGGTTTA
1 GGGTTTA
600684 GGGTTTA
1 GGGTTTA
600691 -GG-TTA
1 GGGTTTA
600696 GGGTTTA
1 GGGTTTA
600703 GGGTTTA
1 GGGTTTA
600710 GGGTTTA
1 GGGTTTA
600717 GGGTTTA
1 GGGTTTA
600724 GGG-TTA
1 GGGTTTA
600730 GGGTTTA
1 GGGTTTA
600737 -GGTTTA
1 GGGTTTA
600743 GGGTTTA
1 GGGTTTA
600750 -GGTTTA
1 GGGTTTA
600756 GGGTTTA
1 GGGTTTA
600763 GGGTTTA
1 GGGTTTA
600770 GGGTTTA
1 GGGTTTA
600777 GGGTTTA
1 GGGTTTA
600784 GGGTTTA
1 GGGTTTA
600791 GGGTTTA
1 GGGTTTA
600798 GGGTTTA
1 GGGTTTA
600805 GGGTTTA
1 GGGTTTA
600812 GGGTTTA
1 GGGTTTA
600819 GGGTTTA
1 GGGTTTA
600826 GGGTTTA
1 GGGTTTA
600833 GGGTTTA
1 GGGTTTA
600840 GGGTTTA
1 GGGTTTA
600847 GGGTTTA
1 GGGTTTA
600854 GGGTTTA
1 GGGTTTA
600861 GGGTTTA
1 GGGTTTA
600868 GGGTTTA
1 GGGTTTA
600875 GGGTTTA
1 GGGTTTA
600882 GGG-TTA
1 GGGTTTA
600888 GGGTTTA
1 GGGTTTA
600895 GGGTTTA
1 GGGTTTA
600902 GGGTTTA
1 GGGTTTA
600909 GGGTTTA
1 GGGTTTA
600916 GGGTTTA
1 GGGTTTA
600923 GGGTTTA
1 GGGTTTA
600930 GGGTTTA
1 GGGTTTA
600937 GGGTTTA
1 GGGTTTA
600944 GGGTTTA
1 GGGTTTA
600951 GGGTTTA
1 GGGTTTA
600958 GGGTTTA
1 GGGTTTA
600965 GGGTTTA
1 GGGTTTA
600972 GGGTTTA
1 GGGTTTA
600979 GGGTTTA
1 GGGTTTA
600986 GGGTTTA
1 GGGTTTA
600993 GGGTTTA
1 GGGTTTA
601000 GGGTTTA
1 GGGTTTA
601007 GGGTTTA
1 GGGTTTA
601014 GGGTTTA
1 GGGTTTA
601021 GGGTTTA
1 GGGTTTA
601028 GGGTTTA
1 GGGTTTA
601035 GGGTTTA
1 GGGTTTA
601042 GGGTTTA
1 GGGTTTA
601049 GGGTTTA
1 GGGTTTA
601056 GGGTTTA
1 GGGTTTA
601063 -GG-TTA
1 GGGTTTA
601068 -GGTTTA
1 GGGTTTA
601074 GGGTTTA
1 GGGTTTA
601081 GGGTTTA
1 GGGTTTA
601088 GGGTTTA
1 GGGTTTA
601095 GGGTTTA
1 GGGTTTA
601102 GGGTTTA
1 GGGTTTA
601109 GGGTTTA
1 GGGTTTA
601116 GGGTTTA
1 GGGTTTA
601123 GGGTTTA
1 GGGTTTA
601130 GGGTTTA
1 GGGTTTA
601137 GGGTTTA
1 GGGTTTA
601144 GGGTTTA
1 GGGTTTA
601151 GGGTTTA
1 GGGTTTA
601158 -GGTTTA
1 GGGTTTA
601164 GGGTTTA
1 GGGTTTA
601171 GGGTTTA
1 GGGTTTA
601178 GGGTTTA
1 GGGTTTA
601185 GGGTTTA
1 GGGTTTA
601192 GGGTTTTA
1 GGG-TTTA
601200 GGG-TTA
1 GGGTTTA
601206 GGGTTTA
1 GGGTTTA
601213 GGGTTTA
1 GGGTTTA
601220 GGGTTTA
1 GGGTTTA
601227 GGG-TT-
1 GGGTTTA
601232 GGGTTTA
1 GGGTTTA
601239 GGGTTTA
1 GGGTTTA
601246 GGGTTTA
1 GGGTTTA
601253 GGGTTTA
1 GGGTTTA
601260 GGGTTTA
1 GGGTTTA
601267 GGGTTTA
1 GGGTTTA
601274 -GG-TTA
1 GGGTTTA
601279 GGGTTTA
1 GGGTTTA
601286 GGGTTTA
1 GGGTTTA
601293 GGGTTTA
1 GGGTTTA
601300 GGGTTTA
1 GGGTTTA
601307 GGG-TTA
1 GGGTTTA
601313 GGGTTTTTTA
1 GGG---TTTA
601323 GGGTTTA
1 GGGTTTA
601330 GGGTTTA
1 GGGTTTA
601337 GGGTTTA
1 GGGTTTA
601344 GGGTTTA
1 GGGTTTA
601351 GGGTTTA
1 GGGTTTA
601358 GGGTTTA
1 GGGTTTA
601365 GGGTTTA
1 GGGTTTA
601372 GGGTTTA
1 GGGTTTA
601379 GGGTTTA
1 GGGTTTA
601386 GGG-TTA
1 GGGTTTA
601392 GGGTTTA
1 GGGTTTA
601399 GGGTTTA
1 GGGTTTA
601406 -GGTTTA
1 GGGTTTA
601412 GGGTTTA
1 GGGTTTA
601419 GGGTTTA
1 GGGTTTA
601426 GGGTTTA
1 GGGTTTA
601433 GGGTTTA
1 GGGTTTA
601440 -GGTTTA
1 GGGTTTA
601446 GGGTTTA
1 GGGTTTA
601453 GGGTTTA
1 GGGTTTA
601460 GGGTTTA
1 GGGTTTA
601467 GGGTTTA
1 GGGTTTA
601474 GGG-TTA
1 GGGTTTA
601480 GGGTTTA
1 GGGTTTA
601487 GGGTTTA
1 GGGTTTA
*
601494 GGG-TTC
1 GGGTTTA
601500 GGGTTTA
1 GGGTTTA
601507 GGGTTTA
1 GGGTTTA
601514 GGGTTTA
1 GGGTTTA
601521 -GGTTTA
1 GGGTTTA
601527 GGGTTT-
1 GGGTTTA
601533 GGG-TTA
1 GGGTTTA
601539 -GG-TTA
1 GGGTTTA
601544 GGGTTTA
1 GGGTTTA
601551 GGG-TTA
1 GGGTTTA
601557 GGGTTTA
1 GGGTTTA
601564 GGGTTTA
1 GGGTTTA
601571 GGGTTTA
1 GGGTTTA
601578 GGGTTTA
1 GGGTTTA
601585 GGGTTTA
1 GGGTTTA
601592 GGGTTTA
1 GGGTTTA
601599 GGGTTT-
1 GGGTTTA
601605 -GGTTTA
1 GGGTTTA
601611 GGGTTTA
1 GGGTTTA
601618 GGGTTTA
1 GGGTTTA
601625 GGGGTTTA
1 -GGGTTTA
601633 GGGTTTA
1 GGGTTTA
601640 GGGTTTA
1 GGGTTTA
601647 GGGTTTA
1 GGGTTTA
601654 GGGTTTA
1 GGGTTTA
601661 -GGTTTA
1 GGGTTTA
601667 GGGTTTA
1 GGGTTTA
601674 GGGTTTA
1 GGGTTTA
601681 GGGTTTA
1 GGGTTTA
601688 GGG-TT-
1 GGGTTTA
601693 GGGTTTA
1 GGGTTTA
601700 GGGTTTA
1 GGGTTTA
601707 GGGTTTA
1 GGGTTTA
601714 GGGTTT-
1 GGGTTTA
601720 GGGTTTA
1 GGGTTTA
601727 GGGTTTA
1 GGGTTTA
601734 GGGTTTA
1 GGGTTTA
601741 GGGTTTA
1 GGGTTTA
601748 GGGTTTA
1 GGGTTTA
601755 GGGTTTA
1 GGGTTTA
601762 GGGTTTA
1 GGGTTTA
601769 GGGTTTA
1 GGGTTTA
601776 GGG-TTA
1 GGGTTTA
601782 GGGTTTA
1 GGGTTTA
601789 GGGTTTA
1 GGGTTTA
601796 GGGTTTA
1 GGGTTTA
601803 GGGTTTA
1 GGGTTTA
601810 GGGTTTA
1 GGGTTTA
601817 GGGTTTA
1 GGGTTTA
601824 GGGTTTA
1 GGGTTTA
601831 GGGTTTA
1 GGGTTTA
601838 GGGTTTA
1 GGGTTTA
601845 GGGTTTA
1 GGGTTTA
601852 GGGTTTA
1 GGGTTTA
601859 GGGTTTA
1 GGGTTTA
601866 GGGTTTA
1 GGGTTTA
601873 GGGTTTA
1 GGGTTTA
601880 -GG-TTA
1 GGGTTTA
601885 GGGTTTA
1 GGGTTTA
601892 GGGTTTA
1 GGGTTTA
601899 GGGTTTA
1 GGGTTTA
601906 GGGTTTA
1 GGGTTTA
601913 GGG-TT-
1 GGGTTTA
601918 GGGTTTA
1 GGGTTTA
601925 GGGTTTA
1 GGGTTTA
601932 GGGTTTA
1 GGGTTTA
601939 GGGTTTA
1 GGGTTTA
601946 GGGTTTA
1 GGGTTTA
601953 GGGTTTA
1 GGGTTTA
601960 GGGTTTA
1 GGGTTTA
601967 GGGTTTA
1 GGGTTTA
601974 GGGTTTA
1 GGGTTTA
601981 GGGTTTA
1 GGGTTTA
601988 GGGTTTA
1 GGGTTTA
601995 GGGTTTA
1 GGGTTTA
602002 GGGTTTA
1 GGGTTTA
602009 GGGTTTA
1 GGGTTTA
602016 GGGTTTA
1 GGGTTTA
602023 GGGTTTA
1 GGGTTTA
602030 GGGTTTA
1 GGGTTTA
602037 GGGTTTA
1 GGGTTTA
602044 GGGTTTA
1 GGGTTTA
602051 GGGTTTA
1 GGGTTTA
602058 GGGTTTA
1 GGGTTTA
602065 GGGTTTA
1 GGGTTTA
602072 GGGTTTA
1 GGGTTTA
602079 GGGTTTA
1 GGGTTTA
602086 GGGTTTA
1 GGGTTTA
602093 GGGTTTA
1 GGGTTTA
602100 GGGTTTA
1 GGGTTTA
602107 GGGTTTA
1 GGGTTTA
602114 GGGTTTA
1 GGGTTTA
602121 GGGTTTA
1 GGGTTTA
602128 GGGTTTA
1 GGGTTTA
602135 GGGTTTA
1 GGGTTTA
602142 GGGTTTA
1 GGGTTTA
602149 GGGTTTA
1 GGGTTTA
602156 GGGTTTA
1 GGGTTTA
*
602163 GGTTTTA
1 GGGTTTA
602170 GGGTTTTA
1 GGG-TTTA
602178 GGGTTTA
1 GGGTTTA
602185 GGGTTTA
1 GGGTTTA
602192 GGGTTTA
1 GGGTTTA
*
602199 GGGTTTC
1 GGGTTTA
602206 GGGTTTA
1 GGGTTTA
602213 GGGTTTA
1 GGGTTTA
602220 GGGTTTA
1 GGGTTTA
602227 -GGTTTA
1 GGGTTTA
602233 GGGTTTA
1 GGGTTTA
602240 GGGTTTA
1 GGGTTTA
602247 GGGTTTA
1 GGGTTTA
602254 GGGTTTA
1 GGGTTTA
602261 GGGTTTA
1 GGGTTTA
602268 GGGGGTTTA
1 --GGGTTTA
602277 GGGTTTA
1 GGGTTTA
602284 GGGTTTA
1 GGGTTTA
602291 GGGTTTA
1 GGGTTTA
602298 GGGTTT-
1 GGGTTTA
602304 GGGTTTA
1 GGGTTTA
602311 GGGTTTA
1 GGGTTTA
602318 GGGTTTA
1 GGGTTTA
602325 GGGTTTA
1 GGGTTTA
602332 GGGTTTA
1 GGGTTTA
602339 GGGTTTA
1 GGGTTTA
602346 -GGTTTA
1 GGGTTTA
602352 GGG-TTA
1 GGGTTTA
602358 GGGTTTA
1 GGGTTTA
602365 GGGTTTA
1 GGGTTTA
602372 GGGTTTA
1 GGGTTTA
602379 GGGTTTA
1 GGGTTTA
602386 GGGTTTA
1 GGGTTTA
602393 -GGTTTA
1 GGGTTTA
602399 GGGTTTA
1 GGGTTTA
602406 GGGTTTA
1 GGGTTTA
602413 GGGTTTA
1 GGGTTTA
602420 GGGTTTA
1 GGGTTTA
602427 GGGTTTA
1 GGGTTTA
602434 GGGTTTA
1 GGGTTTA
602441 GGGTTTA
1 GGGTTTA
602448 GGG-TTA
1 GGGTTTA
602454 GGGTTTA
1 GGGTTTA
602461 GGGTTTA
1 GGGTTTA
602468 GGGTTTA
1 GGGTTTA
602475 GGGTTTA
1 GGGTTTA
602482 GGGTTTA
1 GGGTTTA
602489 GGGTTTTA
1 GGG-TTTA
602497 GGGTTTA
1 GGGTTTA
602504 GGGTTTA
1 GGGTTTA
602511 GGGTTTA
1 GGGTTTA
602518 GGGTTTA
1 GGGTTTA
602525 GGGTTTA
1 GGGTTTA
602532 GGGTTTA
1 GGGTTTA
602539 GGGTTTTA
1 GGG-TTTA
602547 GGGTTTA
1 GGGTTTA
602554 -GGTTTA
1 GGGTTTA
602560 GGGTTTA
1 GGGTTTA
602567 GGGTTTA
1 GGGTTTA
602574 GGGTTTA
1 GGGTTTA
602581 GGGTTTA
1 GGGTTTA
602588 GGGTTTA
1 GGGTTTA
602595 GGGTTTA
1 GGGTTTA
602602 GGGTTTA
1 GGGTTTA
602609 GGGTTTA
1 GGGTTTA
602616 GGGTTTA
1 GGGTTTA
602623 GGGTTTA
1 GGGTTTA
602630 GGGTTTA
1 GGGTTTA
602637 GGGTTTA
1 GGGTTTA
602644 GGGTTTA
1 GGGTTTA
602651 GGGTTTA
1 GGGTTTA
602658 -GGTTTA
1 GGGTTTA
602664 GGGTTTA
1 GGGTTTA
602671 GGGTTTA
1 GGGTTTA
602678 GGGTTTA
1 GGGTTTA
602685 GGG-TTA
1 GGGTTTA
602691 GGGTTTA
1 GGGTTTA
602698 -GGTTTA
1 GGGTTTA
602704 GGGTTTA
1 GGGTTTA
602711 GGGTTTA
1 GGGTTTA
602718 GGGTTTA
1 GGGTTTA
602725 GGGTTTA
1 GGGTTTA
602732 GGGTTTA
1 GGGTTTA
602739 GGGTTTA
1 GGGTTTA
602746 -GGTTTA
1 GGGTTTA
602752 GGGTTTA
1 GGGTTTA
602759 GGGTTTA
1 GGGTTTA
602766 GGGTTTA
1 GGGTTTA
602773 GGGTTTA
1 GGGTTTA
602780 GGGTTTA
1 GGGTTTA
602787 GGGTTTA
1 GGGTTTA
602794 GGGTTTA
1 GGGTTTA
602801 GGGTTTA
1 GGGTTTA
602808 GGGTTTA
1 GGGTTTA
602815 GGGTTT-
1 GGGTTTA
602821 GGGTTTA
1 GGGTTTA
602828 GGGTTTA
1 GGGTTTA
602835 GGG-TTA
1 GGGTTTA
602841 GGGTTTA
1 GGGTTTA
602848 GGGTTTA
1 GGGTTTA
602855 GGGTTTA
1 GGGTTTA
602862 GGGTTTA
1 GGGTTTA
602869 GGGTTTA
1 GGGTTTA
*
602876 GGGTTTC
1 GGGTTTA
602883 GGGTTTA
1 GGGTTTA
602890 GGGTTTA
1 GGGTTTA
602897 GGGTTTA
1 GGGTTTA
602904 GGGTTTA
1 GGGTTTA
602911 GGGTTTA
1 GGGTTTA
602918 GGGTTTA
1 GGGTTTA
*
602925 GGGTTTC
1 GGGTTTA
602932 GGGTTTA
1 GGGTTTA
602939 GGGTTTA
1 GGGTTTA
602946 GGGTTTA
1 GGGTTTA
602953 -GGTTTA
1 GGGTTTA
602959 GGGTTTA
1 GGGTTTA
602966 GGGTTTA
1 GGGTTTA
602973 GGGTTTA
1 GGGTTTA
602980 GGGTTTTTA
1 GGG--TTTA
602989 GGGTTTA
1 GGGTTTA
602996 GGG-TT-
1 GGGTTTA
*
603001 GGGTTTC
1 GGGTTTA
603008 GGG-TTA
1 GGGTTTA
603014 GGG-TTA
1 GGGTTTA
*
603020 GGGTTTTG
1 GGG-TTTA
*
603028 GGGTTTC
1 GGGTTTA
603035 GGGTTTA
1 GGGTTTA
603042 GGGGTTTA
1 -GGGTTTA
603050 GGG-TT-
1 GGGTTTA
*
603055 GGG-TTC
1 GGGTTTA
*
603061 GGGTTTT
1 GGGTTTA
603068 GGG---A
1 GGGTTTA
603072 GGGTTT-
1 GGGTTTA
*
603078 CGGTTTA
1 GGGTTTA
*
603085 GGG-TTC
1 GGGTTTA
603091 GGGTTTA
1 GGGTTTA
603098 GGGTTTA
1 GGGTTTA
603105 GGGTTTA
1 GGGTTTA
*
603112 -GGTTTC
1 GGGTTTA
*
603118 GGG-TTC
1 GGGTTTA
603124 GGG-TT-
1 GGGTTTA
*
603129 GGG-TTC
1 GGGTTTA
603135 GGGTTT-
1 GGGTTTA
603141 GGGTTTA
1 GGGTTTA
603148 GGGTTTA
1 GGGTTTA
603155 GGGTTTA
1 GGGTTTA
603162 GGGGTTTA
1 -GGGTTTA
603170 GGGTTTA
1 GGGTTTA
603177 GGG-TT-
1 GGGTTTA
603182 -GGTTTA
1 GGGTTTA
603188 GGGTTT-
1 GGGTTTA
603194 GGGTTTA
1 GGGTTTA
*
603201 GGGGTT-
1 GGGTTTA
* *
603207 CGG-TTG
1 GGGTTTA
603213 GGGTTTA
1 GGGTTTA
603220 GGGTTT-
1 GGGTTTA
603226 GGGTTT-
1 GGGTTTA
*
603232 GGGTTTC
1 GGGTTTA
603239 GGGTTTA
1 GGGTTTA
*
603246 GGGGTTA
1 GGGTTTA
603253 GGGGGGTTTA
1 ---GGGTTTA
603263 GGGTTTA
1 GGGTTTA
603270 GGGTTTA
1 GGGTTTA
603277 GGGTTTA
1 GGGTTTA
603284 GGG-TTA
1 GGGTTTA
603290 GGGTTTA
1 GGGTTTA
*
603297 GGGGGTTTC
1 --GGGTTTA
603306 GGG-TT-
1 GGGTTTA
*
603311 CGG-TTA
1 GGGTTTA
603317 GGGTTTA
1 GGGTTTA
603324 GGGTTTTA
1 GGG-TTTA
603332 GGGTTTA
1 GGGTTTA
603339 GGG-TT-
1 GGGTTTA
*
603344 GGGGTT-
1 GGGTTTA
603350 GGG-TT-
1 GGGTTTA
603355 GGGTTTA
1 GGGTTTA
*
603362 GGGTTTC
1 GGGTTTA
603369 GGG-TT-
1 GGGTTTA
603374 GGGTTT-
1 GGGTTTA
603380 GGGTTTA
1 GGGTTTA
603387 GGG-TTA
1 GGGTTTA
603393 GGGTTTA
1 GGGTTTA
603400 GGG-TTA
1 GGGTTTA
603406 GGGTTTA
1 GGGTTTA
603413 GGGTTT-
1 GGGTTTA
*
603419 GGTTTTA
1 GGGTTTA
603426 GGGTTTA
1 GGGTTTA
603433 GGGTTTA
1 GGGTTTA
603440 GGG-TTA
1 GGGTTTA
603446 GGGTTTA
1 GGGTTTA
603453 GGG-TTA
1 GGGTTTA
603459 GGGTTTA
1 GGGTTTA
603466 GGG-TTA
1 GGGTTTA
603472 GGGTTT-
1 GGGTTTA
603478 GGGTTT-
1 GGGTTTA
603484 GGG-TTA
1 GGGTTTA
603490 GGGTTTA
1 GGGTTTA
603497 -GGTTTA
1 GGGTTTA
603503 GGGGGTTT-
1 --GGGTTTA
603511 -GGTTTA
1 GGGTTTA
603517 GGGTTTA
1 GGGTTTA
603524 GGGTTTA
1 GGGTTTA
603531 GGGTTTA
1 GGGTTTA
603538 GGGTTTA
1 GGGTTTA
603545 GGGTTTA
1 GGGTTTA
603552 GGGTTTA
1 GGGTTTA
*
603559 GGGTTTC
1 GGGTTTA
603566 GGGTTTA
1 GGGTTTA
603573 GGGTTTA
1 GGGTTTA
603580 GGGTTTA
1 GGGTTTA
603587 GGG-TTA
1 GGGTTTA
603593 GGGTTTA
1 GGGTTTA
603600 GGGGTTTA
1 -GGGTTTA
*
603608 GGGTTTC
1 GGGTTTA
*
603615 GGGTTTC
1 GGGTTTA
*
603622 GGGTTTC
1 GGGTTTA
603629 GGGTTT-
1 GGGTTTA
603635 -GG-TTA
1 GGGTTTA
*
603640 GGGGTT-
1 GGGTTTA
*
603646 GGGTTTC
1 GGGTTTA
603653 GGGTTTA
1 GGGTTTA
603660 GGGTTT-
1 GGGTTTA
603666 GGGTTT-
1 GGGTTTA
603672 GGGTTTA
1 GGGTTTA
603679 GGG-TT-
1 GGGTTTA
*
603684 GGGTTTC
1 GGGTTTA
*
603691 GGGTTTC
1 GGGTTTA
*
603698 GGG-TTC
1 GGGTTTA
*
603704 GGGTTTC
1 GGGTTTA
603711 GGG-TTA
1 GGGTTTA
*
603717 GGGTTTC
1 GGGTTTA
*
603724 GGGTTTC
1 GGGTTTA
603731 GGGTTTA
1 GGGTTTA
603738 GGGTTT-
1 GGGTTTA
* *
603744 GGG-GTC
1 GGGTTTA
*
603750 GGGTTTCGG
1 GGGTTT--A
603759 GGGTTTA
1 GGGTTTA
*
603766 GGGTTTCG
1 GGGTTT-A
*
603774 GGGTTTC
1 GGGTTTA
*
603781 GGGTTTC
1 GGGTTTA
603788 GGGTTTA
1 GGGTTTA
*
603795 GGGTTTC
1 GGGTTTA
603802 GGGTTT-
1 GGGTTTA
*
603808 GGTTTTA
1 GGGTTTA
603815 GGG-TTA
1 GGGTTTA
603821 GGGTTT-
1 GGGTTTA
*
603827 GGGTTTC
1 GGGTTTA
603834 GGGTTTA
1 GGGTTTA
603841 GGGTTT-
1 GGGTTTA
* *
603847 CGGTTTC
1 GGGTTTA
603854 GGGTTT-
1 GGGTTTA
603860 -GGTTTA
1 GGGTTTA
*
603866 GGGTTTC
1 GGGTTTA
*
603873 GGGTTTC
1 GGGTTTA
*
603880 GGGTTTC
1 GGGTTTA
*
603887 GGGTTTC
1 GGGTTTA
*
603894 GGTTTTTA
1 GG-GTTTA
603902 -GGTTTA
1 GGGTTTA
*
603908 GGGTTTC
1 GGGTTTA
*
603915 GGGTTTC
1 GGGTTTA
*
603922 GGGTTTC
1 GGGTTTA
*
603929 GGGTTTC
1 GGGTTTA
*
603936 GGGTTTC
1 GGGTTTA
603943 GGGTTTTA
1 GGG-TTTA
*
603951 GGGTTTC
1 GGGTTTA
*
603958 GGGTTTC
1 GGGTTTA
603965 GGGTTTA
1 GGGTTTA
603972 GGGTTTA
1 GGGTTTA
*
603979 GGGTTTC
1 GGGTTTA
603986 GGGTTTA
1 GGGTTTA
*
603993 GGG-TTC
1 GGGTTTA
603999 GGGTTT-
1 GGGTTTA
*
604005 TGGTTTA
1 GGGTTTA
*
604012 GGGTTTC
1 GGGTTTA
*
604019 GGGTTTC
1 GGGTTTA
604026 GGGTTT-
1 GGGTTTA
* *
604032 CGGTTTC
1 GGGTTTA
604039 GGGTTT-
1 GGGTTTA
604045 GGGTTT-
1 GGGTTTA
604051 GGGTTTA
1 GGGTTTA
*
604058 GGG-TTC
1 GGGTTTA
604064 GGGTTTA
1 GGGTTTA
604071 GGGTTTA
1 GGGTTTA
*
604078 GGGTTTC
1 GGGTTTA
604085 GGGTTTA
1 GGGTTTA
604092 GGGTTT-
1 GGGTTTA
*
604098 GGG-TTC
1 GGGTTTA
*
604104 GGGTTTC
1 GGGTTTA
604111 GGG-TTA
1 GGGTTTA
604117 GGGGTTTTA
1 -GGG-TTTA
604126 GGGTTTA
1 GGGTTTA
604133 GGGTTT-
1 GGGTTTA
604139 GGGTTTA
1 GGGTTTA
*
604146 GGGTTTC
1 GGGTTTA
*
604153 GGGTTTC
1 GGGTTTA
604160 GGG-TTA
1 GGGTTTA
604166 GGG-TTA
1 GGGTTTA
604172 GGGTTTA
1 GGGTTTA
604179 GGGTTTA
1 GGGTTTA
* *
604186 GGGGTTC
1 GGGTTTA
604193 GGGTTTA
1 GGGTTTA
*
604200 GGGGTTTC
1 -GGGTTTA
604208 GGGTTT-
1 GGGTTTA
*
604214 GGGTTTC
1 GGGTTTA
*
604221 GGG--TC
1 GGGTTTA
*
604226 GGGGTTA
1 GGGTTTA
604233 GGGTTT-
1 GGGTTTA
*
604239 CGGTTTA
1 GGGTTTA
*
604246 GGGTTTC
1 GGGTTTA
*
604253 GGGTTTC
1 GGGTTTA
*
604260 GGG-TTG
1 GGGTTTA
*
604266 GGGTTTCG
1 GGGTTT-A
604274 GGGTTTA
1 GGGTTTA
*
604281 GGGTTTC
1 GGGTTTA
604288 GGGTTTA
1 GGGTTTA
*
604295 GGGTTTC
1 GGGTTTA
604302 GGGTTTA
1 GGGTTTA
604309 GGGTTTA
1 GGGTTTA
604316 GGGTTTA
1 GGGTTTA
604323 GGGTTT-
1 GGGTTTA
604329 GGGTTTA
1 GGGTTTA
*
604336 GGGTTTC
1 GGGTTTA
604343 GGGTTT-
1 GGGTTTA
604349 -GGTTTA
1 GGGTTTA
604355 GGGTTT-
1 GGGTTTA
604361 GGGTTT-
1 GGGTTTA
*
604367 CGGTTT-
1 GGGTTTA
604373 GGGTTTA
1 GGGTTTA
*
604380 GGGTTTC
1 GGGTTTA
604387 GGGTTTA
1 GGGTTTA
*
604394 GGGTTTC
1 GGGTTTA
*
604401 GGGTTTC
1 GGGTTTA
604408 GGGTTTA
1 GGGTTTA
*
604415 GGGTTTC
1 GGGTTTA
*
604422 GGGTTTC
1 GGGTTTA
*
604429 GGGTTTC
1 GGGTTTA
*
604436 GGG-TTC
1 GGGTTTA
604442 GGGTTTA
1 GGGTTTA
604449 GGG-TT-
1 GGGTTTA
604454 GGGTTT-
1 GGGTTTA
*
604460 GGGTTTC
1 GGGTTTA
604467 GGGTTTA
1 GGGTTTA
*
604474 GGGTTTC
1 GGGTTTA
*
604481 GGGTTTC
1 GGGTTTA
*
604488 GGGTTTTC
1 GGG-TTTA
*
604496 GGGTTTC
1 GGGTTTA
*
604503 GGGGTT-
1 GGGTTTA
*
604509 GGG-TTC
1 GGGTTTA
604515 GGG-TT-
1 GGGTTTA
*
604520 GGGTTTC
1 GGGTTTA
*
604527 GGGTTTC
1 GGGTTTA
*
604534 GGGTTTC
1 GGGTTTA
*
604541 GGGTTTC
1 GGGTTTA
604548 GGGTTTA
1 GGGTTTA
604555 GGGTTT
1 GGGTTT
604561 CGGGGTTTCG
Statistics
Matches: 6284, Mismatches: 110, Indels: 454
0.92 0.02 0.07
Matches are distributed among these distances:
4 8 0.00
5 121 0.02
6 830 0.13
7 5145 0.82
8 113 0.02
9 34 0.01
10 33 0.01
ACGTcount: A:0.12, C:0.02, G:0.44, T:0.42
Consensus pattern (7 bp):
GGGTTTA
Done.