Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008671.1 Hibiscus syriacus cultivar Beakdansim tig00111684_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112365

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4335--4377
20
2.2
20
91
0
68
34
20
11
32
1.89
6235--6273
16
2.4
16
100
0
78
17
12
25
43
1.85
12886--12927
20
2.1
20
90
0
66
35
21
9
33
1.86
20037--20280
122
2.0
122
96
0
452
38
25
12
24
1.90
21592--21629
19
2.0
19
100
0
76
47
15
0
36
1.46
22728--22910
93
2.0
92
94
1
321
38
2
3
55
1.30
23801--23833
15
2.3
15
89
5
50
48
0
9
42
1.35
25395--25458
23
2.8
23
81
13
71
31
1
1
65
1.11
31614--31680
25
3.0
21
71
23
64
49
2
2
44
1.32
40018--40076
20
3.0
20
85
5
75
20
27
22
30
1.98
40086--40126
5
7.8
5
84
10
55
19
53
21
4
1.63
40085--40132
22
2.2
22
100
0
96
18
47
22
10
1.79
40123--40153
7
4.4
7
91
0
53
16
25
29
29
1.96
47274--47348
29
2.6
29
82
8
89
18
24
26
30
1.98
47351--47391
5
7.8
5
84
10
55
19
53
21
4
1.63
47350--47398
22
2.2
22
100
0
98
18
48
22
10
1.77
54565--54637
29
2.5
30
82
11
96
20
26
23
30
1.99
54647--54684
17
2.2
17
95
0
67
18
44
23
13
1.85
54631--54690
24
2.5
22
78
10
66
16
40
25
18
1.91
68168--68200
3
11.0
3
100
0
66
66
0
0
33
0.92
69649--69748
9
11.1
9
69
19
57
18
5
4
73
1.18
70813--70850
16
2.4
16
86
8
51
21
2
2
73
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74257--74295
10
3.7
11
80
13
55
82
7
10
0
0.86
74250--74306
16
3.3
16
75
17
60
80
7
12
0
0.89
74252--74313
16
4.3
15
74
15
51
77
8
12
1
1.06
74262--74312
20
2.4
20
83
9
66
78
9
9
1
1.04
75332--75395
32
2.0
33
93
3
112
31
15
20
32
1.94
75923--75982
32
1.9
32
90
6
97
40
18
10
31
1.84
76119--76190
37
1.9
37
85
0
99
26
20
12
40
1.88
76806--77245
106
4.2
106
89
1
650
37
24
16
21
1.94
78803--78875
9
7.7
9
72
22
60
19
5
1
73
1.09
81566--81638
36
2.0
36
84
10
96
50
4
1
43
1.29
82065--82097
16
1.9
18
88
11
52
48
0
36
15
1.45
84409--84504
3
34.0
3
72
19
64
27
4
0
68
1.07
84439--84506
23
2.8
25
76
12
72
22
2
0
75
0.94
84855--84911
18
3.3
18
79
13
66
21
3
1
73
1.07
84866--84924
28
2.1
27
84
6
73
22
5
1
71
1.15
85365--85400
16
2.4
15
86
13
56
41
5
0
52
1.24
85961--85998
13
2.9
14
80
15
53
57
0
0
42
0.98
87592--87624
16
2.0
17
88
5
50
3
15
21
60
1.48
88018--88079
21
3.0
21
79
13
74
38
0
0
61
0.96
89253--89284
16
2.0
16
93
0
55
65
0
0
34
0.93
101092--101125
17
2.0
17
88
0
50
38
2
14
44
1.61
101323--101347
2
12.5
2
100
0
50
52
0
48
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103590--103629
20
2.0
21
90
5
64
35
5
15
45
1.68
103537--103686
53
2.9
52
94
3
257
32
6
14
46
1.70
103643--103682
20
2.0
20
95
0
71
37
5
12
45
1.64

Tables:   1

The End!