genome.fa.s8675.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008675.1 Hibiscus syriacus cultivar Beakdansim tig00111691_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97836

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213--269	22	2.5	23	88	2	80	38	19	7	35	1.79
622--673	21	2.5	20	84	9	68	42	19	1	36	1.62
627--697	23	3.2	22	84	8	81	39	19	5	35	1.76
1009--1047	20	2.0	20	84	0	51	48	7	15	28	1.72
1050--1121	23	3.2	22	88	4	90	38	19	5	36	1.75
1469--1520	21	2.5	20	84	9	68	44	17	1	36	1.60
1474--1544	23	3.2	22	84	8	81	40	18	5	35	1.74
1899--1970	23	3.2	22	88	4	90	38	19	5	36	1.75
3--3340	424	7.9	430	97	2	6235	38	13	8	39	1.75
2319--2372	23	2.5	20	75	18	54	42	18	1	37	1.61
2334--2396	23	2.7	23	90	0	90	38	19	6	36	1.77
2749--2820	23	3.1	23	87	2	90	40	19	5	34	1.75
3171--3225	23	2.5	20	76	18	56	43	18	1	36	1.61
5791--6454	183	3.7	183	96	2	1223	34	15	14	35	1.89
7817--7867	3	17.0	3	83	0	66	25	33	3	37	1.74
7817--7879	12	5.2	12	90	0	81	23	33	6	36	1.80
7821--7882	18	3.4	18	88	0	88	20	33	6	38	1.79
7821--7882	6	10.3	6	83	0	61	20	33	6	38	1.79
9345--10562	200	6.1	199	97	0	2137	32	15	14	37	1.88
9345--10562	399	3.1	398	95	1	2207	32	15	14	37	1.88
10628--10707	38	2.1	38	83	2	99	55	10	2	32	1.47
10644--10707	19	3.4	19	95	0	110	56	9	3	31	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12500--12565	33	2.0	33	87	0	96	24	45	1	28	1.62
14675--14727	24	2.2	24	83	6	63	26	7	13	52	1.66
14872--14918	20	2.4	19	79	10	58	19	17	8	55	1.67
15034--15083	20	2.5	20	81	12	75	22	16	10	52	1.73
24182--24224	17	2.5	17	85	7	52	65	0	2	32	1.06
24182--24224	16	2.6	16	81	3	50	65	0	2	32	1.06
27150--27197	23	2.1	23	88	0	69	35	12	18	33	1.89
27451--27501	25	2.0	25	92	0	84	39	19	7	33	1.81
27770--27821	23	2.3	22	90	6	77	44	19	1	34	1.62
27780--27842	23	2.7	23	90	0	90	38	19	6	36	1.77
28201--28252	23	2.3	22	90	6	77	44	19	1	34	1.62
28211--28273	23	2.7	23	90	0	90	38	19	6	36	1.77
28631--28682	23	2.3	22	83	9	68	44	17	1	36	1.60
28641--28703	23	2.7	23	87	0	81	38	15	7	38	1.77
27533--28802	431	2.9	431	98	0	2434	39	12	8	39	1.73
31827--31869	22	1.9	23	90	4	70	44	13	11	30	1.80
31865--32557	183	3.8	183	95	1	1223	33	16	14	36	1.89
33756--33827	3	24.0	3	78	0	72	25	34	5	34	1.79
35260--36231	198	4.9	198	98	0	1881	30	15	16	36	1.91
36350--36398	19	2.6	19	93	0	80	57	10	2	30	1.43
38191--38256	33	2.0	33	90	0	105	22	48	0	28	1.51
38290--38354	21	3.1	21	80	6	69	15	29	15	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40587--40634	20	2.4	19	83	10	69	20	16	10	52	1.73
40755--40800	20	2.3	20	89	10	76	17	17	10	54	1.70
42517--42553	20	1.9	19	89	10	58	45	5	24	24	1.74
42698--42767	37	1.9	37	85	8	99	47	5	0	47	1.26
43886--43923	21	1.9	20	89	10	60	39	31	10	18	1.85
43928--43982	25	2.2	25	77	6	58	61	1	0	36	1.06
43916--44000	34	2.5	34	94	0	143	58	1	0	40	1.05
43946--44003	18	3.3	18	72	18	68	58	0	0	41	0.98
53790--53885	38	2.4	41	84	8	128	50	5	12	32	1.62
57358--57392	15	2.3	15	90	0	52	17	11	31	40	1.85
77525--77558	16	2.1	16	94	0	59	32	8	26	32	1.87
83307--83343	15	2.5	15	90	0	56	8	16	67	8	1.40
95179--95215	18	2.1	18	85	14	51	32	13	10	43	1.79
96999--97053	15	3.4	16	75	12	51	54	0	3	41	1.18
97496--97542	20	2.3	21	75	17	53	29	0	25	44	1.54

Tables:   1

The End!