genome.fa.s8677.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008677.1 Hibiscus syriacus cultivar Beakdansim tig00111694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103999

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18942--19021	36	2.2	36	86	0	106	45	16	13	25	1.84
25443--25491	20	2.5	20	96	0	89	48	0	40	10	1.37
30369--30464	28	3.4	28	97	0	174	48	5	9	36	1.58
30831--31025	21	9.3	21	71	12	132	23	20	21	34	1.96
30813--31019	84	2.5	83	79	8	226	23	20	20	35	1.96
30813--31026	42	5.1	42	78	7	195	23	20	20	35	1.96
31109--31141	6	5.7	6	92	7	59	33	51	15	0	1.43
31882--32106	21	10.5	22	72	17	145	37	22	18	20	1.94
31883--32025	42	3.4	42	93	1	232	37	23	18	20	1.94
31952--32106	65	2.4	63	86	6	206	38	20	18	21	1.93
31910--32106	107	1.8	107	90	0	313	38	21	18	21	1.94
32102--32154	21	2.5	21	90	0	79	16	18	32	32	1.94
32699--32758	30	2.0	31	93	6	106	33	3	16	46	1.64
32840--32926	8	11.0	8	68	24	51	25	33	17	24	1.96
32945--32999	20	2.7	21	88	2	85	20	32	18	29	1.96
33363--33432	34	2.1	32	86	5	95	31	15	27	25	1.96
33933--33981	21	2.2	23	85	10	75	20	4	6	69	1.27
33965--33990	10	2.6	10	100	0	52	19	0	7	73	1.07
33933--33989	21	2.6	22	83	10	55	19	3	7	70	1.26
34242--34311	30	2.2	30	85	12	88	65	4	8	21	1.37
34320--34371	27	1.9	28	88	7	81	44	0	1	53	1.11
38581--38642	31	2.0	31	100	0	124	41	16	22	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55407--55440	14	2.4	14	85	0	50	55	2	5	35	1.39
55711--56743	526	2.0	516	94	2	1834	31	15	18	34	1.92
57146--57210	32	2.0	32	100	0	130	33	6	12	47	1.66
59329--59379	2	25.5	2	100	0	102	49	0	0	50	1.00
60397--60460	32	2.0	32	96	0	119	51	18	6	23	1.69
61007--61140	66	2.0	65	90	4	207	47	11	14	27	1.78
62189--62494	36	8.9	34	72	15	157	43	3	6	45	1.49
62211--62329	34	3.5	33	80	7	141	42	2	6	47	1.43
62174--62494	69	4.6	67	73	12	179	44	4	6	45	1.48
62335--62387	26	2.0	28	88	7	83	50	3	1	43	1.30
62251--62499	105	2.4	104	79	9	251	44	4	6	45	1.47
62507--62532	2	13.0	2	100	0	52	50	0	0	50	1.00
68815--69751	165	5.7	164	90	0	1442	30	24	21	24	1.99
68815--69750	329	2.8	329	95	0	1642	30	24	21	24	1.99
70275--70610	37	9.1	37	72	13	187	45	3	6	44	1.47
70263--70621	36	9.8	36	71	12	196	44	4	6	45	1.48
70446--70503	28	2.0	29	87	9	84	51	3	1	43	1.28
70267--70597	38	9.0	36	73	13	201	45	4	5	44	1.47
74169--74232	15	4.3	15	81	0	65	31	7	39	21	1.82
74238--74270	9	3.7	9	91	0	57	48	0	51	0	1.00
78493--78550	5	10.8	5	75	14	53	8	20	51	18	1.72
78486--78550	22	3.0	22	95	0	121	10	21	49	18	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78553--78645	9	9.7	10	78	13	90	30	25	25	18	1.98
78553--78644	29	3.2	30	83	10	61	30	26	26	17	1.97
85775--85817	22	2.0	22	100	0	86	9	23	48	18	1.76
85827--85865	21	1.9	21	89	5	62	30	23	25	20	1.98
87302--87336	18	1.9	18	88	0	52	22	0	20	57	1.41
102644--102672	3	9.7	3	100	0	58	34	0	0	65	0.93
103497--103542	20	2.3	20	88	7	67	54	10	28	6	1.60

Tables:   1

The End!