Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008679.1 Hibiscus syriacus cultivar Beakdansim tig00111698_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66322

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5764--5941
45
3.9
45
83
5
234
28
23
11
37
1.90
5916--6038
45
2.7
45
92
2
192
24
20
6
48
1.73
6033--6432
68
5.9
68
92
0
665
31
26
14
28
1.95
9280--9321
13
3.2
13
86
0
57
28
21
14
35
1.92
15515--15744
76
3.0
76
92
1
390
37
7
24
30
1.84
18896--18920
11
2.3
11
100
0
50
36
0
36
28
1.58
19456--19575
41
2.9
40
77
13
109
30
17
23
28
1.97
21545--21711
81
2.1
81
90
0
262
13
34
23
28
1.92
29366--29408
21
2.0
21
81
0
50
30
30
25
13
1.94
29388--29539
68
2.2
68
90
1
234
26
28
27
17
1.97
29842--29913
29
2.5
29
90
4
110
37
9
12
40
1.76
29928--29987
30
2.0
31
90
3
95
36
6
23
33
1.81
30207--30274
22
3.0
22
97
2
127
19
26
27
26
1.99
36305--36476
67
2.6
67
86
5
215
27
27
27
17
1.98
36779--36850
29
2.5
29
90
4
110
37
9
12
40
1.76
36865--36924
30
2.0
31
90
3
95
36
6
23
33
1.81
37144--37211
22
3.0
22
97
2
127
19
26
27
26
1.99
37909--38010
21
4.9
21
80
9
84
45
14
35
4
1.67
37909--38010
42
2.4
42
82
9
111
45
14
35
4
1.67
38358--38475
44
2.7
44
87
0
164
27
23
16
31
1.97
38489--38661
43
4.0
43
85
5
217
32
19
19
28
1.96
41420--41471
26
2.0
25
85
3
68
28
0
11
59
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41420--41481
26
2.5
25
79
7
56
29
0
12
58
1.35
42681--42734
23
2.3
23
90
0
90
29
22
22
25
1.99
44493--44527
2
17.5
2
100
0
70
48
0
0
51
1.00
46381--46426
19
2.4
20
71
10
51
19
2
6
71
1.18
48497--48547
22
2.3
22
100
0
102
19
0
41
39
1.52
48951--48987
14
2.4
17
86
13
53
62
2
0
35
1.10
49450--49544
42
2.3
42
83
1
120
33
20
22
24
1.97
49624--50189
90
6.3
90
93
0
911
33
22
17
26
1.96
49624--50189
179
3.2
179
93
0
936
33
22
17
26
1.96
49526--50189
269
2.4
268
89
4
986
34
21
17
26
1.96
50165--50226
20
3.0
20
74
11
63
29
25
24
20
1.99
50265--50412
43
3.5
43
86
4
210
28
29
14
27
1.95
52549--52688
9
16.8
9
76
18
94
0
18
0
81
0.69
52547--52690
8
18.9
7
75
20
105
0
18
0
81
0.70
52547--52688
1
142.0
1
65
0
50
0
18
0
81
0.69
52547--52688
74
1.9
74
86
12
204
0
18
0
81
0.69
52547--52687
64
2.2
66
84
8
182
0
18
0
81
0.69
52550--52691
17
8.1
17
78
17
125
0
19
0
80
0.72
55384--55421
12
3.1
12
92
3
58
44
13
15
26
1.83
58576--58618
22
2.0
22
90
0
68
18
0
41
39
1.51
59622--59658
3
12.3
3
88
0
56
64
2
0
32
1.07
59618--59669
15
3.5
15
76
23
56
65
1
0
32
1.04

Tables:   1

The End!