genome.fa.s868.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000868.1 Hibiscus syriacus cultivar Beakdansim tig00001675_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77078

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298--343	13	2.9	17	72	24	55	54	0	0	45	0.99
312--340	13	2.2	13	100	0	58	58	0	0	41	0.98
2538--2585	25	1.9	25	95	0	87	16	14	14	54	1.72
3974--4031	25	2.3	25	90	0	89	18	36	1	43	1.61
4305--4440	71	1.9	71	93	3	238	27	27	27	17	1.98
5466--5549	42	2.0	43	95	2	152	42	14	15	27	1.85
5654--5717	17	3.7	17	68	17	51	35	10	9	43	1.72
8530--8606	30	2.6	30	76	15	88	33	16	2	46	1.61
18785--18831	18	2.7	18	93	3	78	38	8	25	27	1.85
19412--19510	33	3.2	32	76	13	109	42	32	8	17	1.78
20059--20105	24	2.0	24	86	0	67	46	2	0	51	1.13
26911--26963	24	2.2	25	82	3	63	39	3	5	50	1.44
28894--28990	31	3.2	31	65	11	74	43	5	15	36	1.69
28808--28989	60	3.0	60	79	8	185	39	6	18	35	1.76
34697--34757	30	2.0	30	96	0	113	27	13	6	52	1.64
34827--35133	121	2.5	121	78	6	332	44	9	15	30	1.78
39242--39302	30	2.0	30	96	0	113	27	13	6	52	1.64
39372--39640	121	2.2	121	81	2	315	43	8	16	30	1.78
42815--42846	16	2.1	15	94	5	55	43	3	0	53	1.16
42816--42864	22	2.2	23	82	7	57	46	2	0	51	1.12
44582--44612	4	7.8	4	92	0	53	77	0	3	19	0.90
44650--44684	17	2.1	17	100	0	70	60	5	0	34	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44787--44841	14	3.9	14	76	11	58	47	1	0	50	1.11
47516--47564	19	2.8	16	80	17	53	61	0	4	34	1.15
52037--52066	2	15.5	2	93	6	53	50	0	0	50	1.00
57924--57967	21	2.3	19	81	14	54	29	11	2	56	1.46
61022--61095	10	7.0	10	69	22	53	22	33	29	13	1.93
61044--61095	20	2.6	20	96	0	95	25	28	30	15	1.96
61092--61199	33	3.3	33	94	0	189	25	24	40	9	1.85
61203--61258	29	1.9	29	96	0	103	19	30	37	12	1.89
61198--61486	114	2.5	114	97	0	551	20	26	32	20	1.97
61431--61487	29	2.0	29	93	6	98	21	31	35	12	1.90
62859--63052	2	100.0	2	75	6	130	0	63	0	36	0.95
62859--63052	10	18.8	10	77	8	174	0	63	0	36	0.95
76501--76551	25	2.0	26	92	7	88	54	7	13	23	1.65

Tables:   1

The End!