Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008681.1 Hibiscus syriacus cultivar Beakdansim tig00111703_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76252

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10924--10969
23
2.0
23
91
8
76
21
10
8
58
1.58
14110--14149
19
2.2
19
86
13
57
45
0
15
40
1.46
20809--20841
15
2.1
16
88
5
50
9
24
15
51
1.72
20839--20888
22
2.3
22
100
0
100
20
22
14
44
1.86
21611--21644
16
2.1
16
94
0
59
32
26
8
32
1.87
27953--27992
2
20.0
2
100
0
80
50
0
0
50
1.00
28078--28102
2
12.5
2
100
0
50
52
0
0
48
1.00
28102--28139
2
19.0
2
100
0
76
50
0
50
0
1.00
33034--33073
2
20.0
2
100
0
80
50
0
0
50
1.00
33301--33351
27
1.9
26
84
4
66
50
0
1
47
1.12
34204--34292
43
2.1
43
100
0
178
62
2
16
17
1.42
39327--39351
2
12.5
2
100
0
50
48
0
0
52
1.00
39899--40148
123
2.1
120
84
4
324
52
4
2
42
1.31
39935--40321
117
3.2
120
82
8
389
50
4
1
43
1.31
39997--40382
59
6.5
58
82
7
422
49
4
1
44
1.30
39988--40382
117
3.3
116
84
8
465
49
4
1
44
1.32
40109--40453
117
2.9
120
83
10
363
48
3
2
46
1.30
39997--40446
59
7.5
56
74
17
233
49
3
1
44
1.30
41322--41361
19
2.0
20
85
4
55
55
0
5
40
1.22
47650--47701
25
2.1
25
96
0
95
34
13
15
36
1.87
49440--49523
15
5.7
14
68
15
53
46
3
1
48
1.27
49499--49548
21
2.3
22
82
6
66
40
2
2
56
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53551--53576
9
2.9
9
100
0
52
57
0
0
42
0.98
63059--63453
197
2.0
194
90
5
627
57
4
7
30
1.46
64431--64467
3
12.7
3
94
5
67
67
0
0
32
0.91
64934--65707
105
7.4
105
96
0
1363
23
18
25
32
1.97
66439--66471
1
33.0
1
100
0
66
0
0
0
100
0.00

Tables:   1

The End!