Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008683.1 Hibiscus syriacus cultivar Beakdansim tig00111705_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64854
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:615 original size:52 final size:52
Alignment explanation
Indices: 453--607 Score: 287
Period size: 51 Copynumber: 3.0 Consensus size: 52
443 TTACGTTCGG
453 AGGATTATGAATAGTTAAGTATGGGATTAGAATATCTTTGATATTAGAAGGA
1 AGGATTATGAATAGTTAAGTATGGGATTAGAATATCTTTGATATTAGAAGGA
505 AGGATTATGAATAGTTAAGTA-GGGATTAGAATATCTTTGATATTAGAAGGA
1 AGGATTATGAATAGTTAAGTATGGGATTAGAATATCTTTGATATTAGAAGGA
556 AGGATTATGAATAGTTTAAGTATGGGATTAGAATATCTTTGATA-TAGAAGGA
1 AGGATTATGAATAG-TTAAGTATGGGATTAGAATATCTTTGATATTAGAAGGA
608 TTAATTATTG
Statistics
Matches: 101, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
51 44 0.44
52 36 0.36
53 21 0.21
ACGTcount: A:0.39, C:0.02, G:0.25, T:0.34
Consensus pattern (52 bp):
AGGATTATGAATAGTTAAGTATGGGATTAGAATATCTTTGATATTAGAAGGA
Found at i:4181 original size:291 final size:291
Alignment explanation
Indices: 3655--4213 Score: 793
Period size: 291 Copynumber: 1.9 Consensus size: 291
3645 CCGAAAATTC
* *
3655 GAGCTGCTAATGGCGTTCGAGACATATTAGTTTCTCCTCTACTACCATTGGCATTGAAAATCTAG
1 GAGCTGCTAATGGCGTTCGAGACAAATTAGTTTCTCCTCTACTACCATAGGCATTGAAAATCTAG
* * * * *
3720 CACAGATAAGTTGAATTTTAAACTTGTTGAGTGTGCTTGATATATGCATAACTGGAATTTGATAC
66 CACAGACAAGTTGAATCTTAAACTTGCTGAATGTGCTTGATATATGCATAACTGGAATTGGATAC
** * * * *
3785 TTTGAGCTGCCAATGGTGTTTGAAGATGATTAGTTTCTTTGCTACTGTCTGGTGTCGCTTTAGCA
131 TAGGAGCAGCCAATAGTGTTTGAAGATGATCAGTTTCTTTGCTACTGTCTGGTGTAGCTTTAGCA
* * * * *
3850 TTGAAAATTTAGCAATGACTAGCGAATTGAATCTTAAAACTTGTCGATCGTGCTCGACTTATACA
196 TTGAAAATCTAGCAATGACGACCGAATTGAATCATAAAACTTGTCGATCGTGCTCCACTTATACA
3915 TAATTGGAACCTGAAACTAATCTGAAACTTT
261 TAATTGGAACCTGAAACTAATCTGAAACTTT
*
3946 GAGCTGCTAATGGCGTTCGAGA-AGAATTAGTTTCTTCC-CTGCTACCATAGGCATTGAAAATCT
1 GAGCTGCTAATGGCGTTCGAGACA-AATTAGTTTC-TCCTCTACTACCATAGGCATTGAAAATCT
** * *
4009 AGCA-ATGACGGGTTGAATCTTAAACTTGCTGAATGTGCTTGATTTGTGCATAACTTGG-ATTGG
64 AGCACA-GACAAGTTGAATCTTAAACTTGCTGAATGTGCTTGATATATGCATAAC-TGGAATTGG
* *
4072 ATACTAGGAGCAGCTAATAGTGTTTGAAGATGATCAGTTTCTTTGCTGCTGTCTGGTGTAGCTTT
127 ATACTAGGAGCAGCCAATAGTGTTTGAAGATGATCAGTTTCTTTGCTACTGTCTGGTGTAGCTTT
** * *
4137 AGCATTGAAAATCTAGCAATGACGACCGGGTTGAATCATAAAACTTGTCGGTCGTGCTCCAGTTA
192 AGCATTGAAAATCTAGCAATGACGACCGAATTGAATCATAAAACTTGTCGATCGTGCTCCACTTA
4202 TACATAATTGGA
257 TACATAATTGGA
4214 GTCAGAAACT
Statistics
Matches: 235, Mismatches: 29, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
290 2 0.01
291 227 0.97
292 6 0.03
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (291 bp):
GAGCTGCTAATGGCGTTCGAGACAAATTAGTTTCTCCTCTACTACCATAGGCATTGAAAATCTAG
CACAGACAAGTTGAATCTTAAACTTGCTGAATGTGCTTGATATATGCATAACTGGAATTGGATAC
TAGGAGCAGCCAATAGTGTTTGAAGATGATCAGTTTCTTTGCTACTGTCTGGTGTAGCTTTAGCA
TTGAAAATCTAGCAATGACGACCGAATTGAATCATAAAACTTGTCGATCGTGCTCCACTTATACA
TAATTGGAACCTGAAACTAATCTGAAACTTT
Found at i:8351 original size:29 final size:29
Alignment explanation
Indices: 8318--8425 Score: 180
Period size: 29 Copynumber: 3.7 Consensus size: 29
8308 TGGTTCCGTA
*
8318 TAGTGCCTAATATTTATTTCGTTCTAGTT
1 TAGTGCCTAACATTTATTTCGTTCTAGTT
8347 TAGTGCCTAACATTTATTTCGTTCTAGTT
1 TAGTGCCTAACATTTATTTCGTTCTAGTT
8376 TAGTGCCTAACATTTATTTCGTTCTAGTT
1 TAGTGCCTAACATTTATTTCGTTCTAGTT
* *
8405 TAGTGTCTAACGTTTCATTTC
1 TAGTGCCTAACATTT-ATTTC
8426 ATAACTCAAA
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
29 70 0.93
30 5 0.07
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (29 bp):
TAGTGCCTAACATTTATTTCGTTCTAGTT
Found at i:10539 original size:3 final size:3
Alignment explanation
Indices: 10531--10557 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
10521 TGCCCGCTGC
10531 TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT
10558 CGGAGGAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:16041 original size:302 final size:304
Alignment explanation
Indices: 15212--16325 Score: 1189
Period size: 302 Copynumber: 3.7 Consensus size: 304
15202 TCTCTCATAT
* * ** *
15212 GTGGTAACATTGAAATCCCATGTTCTCATCGGTTATTTCACATCATTTCAAGATATATTATCCAT
1 GTGGTAACATTGAAATTCCATGTTCTCTTCGGTTATTTCACATCATTTCCGGATATATTATTCAT
* * ** * * * * *
15277 TCATTTGCCTCACACACACACACTGACGACTTCAAAGGCACGTGGAGATTCCTAACAACCAATAA
66 TTATTGGCC-C-TTCACACACACTAACGACTTCAAAGCCACGTAGAGCTTCCTAACAACTAATAA
* * *** *
15342 AAATCAAGGATTCTAAATACGGACAGGTGAAACGGTTCCAAGGCAATCAAAACATACGAC-AAA-
129 AAATCAAGGATTCTAAATACGAACAGGTTAGGTGATTCCAAGGCAATCAAAACATACGACTAAAG
* * * * * * *
15405 AG-AGCACATGTATCATACAAGTAATGTTCAAAGATAGTAGTTATGATCTTTTAGGACACGGGTT
194 GGCAGCACA-GTTTCATACAAATAACGTTTAAAGATAGTAGTTACGATCTTTTAGGACACGAGTT
* *
15469 TTCTGGAAAAGAGAAAATGAACC-ACCACCAAAAAGATCTCT-CCCAT
258 TTCTGGAAAAGAGAAAATG-ACCAACCACCAGAAAGATCTCTCCCCAC
** * * * * *
15515 GTGGTAACATCAAAATTCCACGTTCTCTTTGGTTATTTGACATCATTTTCGGGTATATTATTCAT
1 GTGGTAACATTGAAATTCCATGTTCTCTTCGGTTATTTCACATCATTTCCGGATATATTATTCAT
* * * * *
15580 TTATTGTCCTTTCACACACTCCAACGACTTCAAAGCCACGTAGAGCTTCC-AA-AAAT-ATACTA
66 TTATTGGCCCTTCACACACACTAACGACTTCAAAGCCACGTAGAGCTTCCTAACAACTAATA--A
* *
15642 AAATCAAGGATTCTAAATAC-AGACAGGTTA--TGCATTCCAAGGCAATCGAAAAAATACGACAA
129 AAATCAAGGATTCTAAATACGA-ACAGGTTAGGTG-ATTCCAAGGCAATC-AAAACATACGACTA
** * * * *
15704 AAGGGCA-CACA-TGCCATACAAGTAACGTATAAAGATCGCAGTTACGATCTTTTAGGACACGAG
191 AAGGGCAGCACAGTTTCATACAAATAACGTTTAAAGATAGTAGTTACGATCTTTTAGGACACGAG
15767 TTTTCTGGAAAAGAGAAAATGACCAACCACCAGAAAGATCTCTCCCCCAC
256 TTTTCTGGAAAAGAGAAAATGACCAACCACCAGAAAGATCTCT-CCCCAC
* * *
15817 GTGGTAACATTGAAATTTCATGTTCTCTTCGGCTATTTCACATCAATTCCGGATATATTATTCAT
1 GTGGTAACATTGAAATTCCATGTTCTCTTCGGTTATTTCACATCATTTCCGGATATATTATTCAT
* * *
15882 TTATTGGCCCTTCACACACACTGAC-ACTTCAAAACCATGTAGAGCTTCCTAACAACTAATAAAA
66 TTATTGGCCCTTCACACACACTAACGACTTCAAAGCCACGTAGAGCTTCCTAACAACTAATAAAA
* * * * *
15946 GTCGAGGATTCTAAATATGAAAAGGTTAGGTGATTCCAAGGCAATCAAAACATATGACTAAAGGG
131 ATCAAGGATTCTAAATACGAACAGGTTAGGTGATTCCAAGGCAATCAAAACATACGACTAAAGGG
* * * *
16011 -AGCA-AGTTTCATACAAATGACGTTTAAAGATAGTAATTATC-TTCTTTTAGGGCACGAGTTTT
196 CAGCACAGTTTCATACAAATAACGTTTAAAGATAGTAGTTA-CGATCTTTTAGGACACGAGTTTT
* * * *
16073 CTGGAAAAGAG-GAATG---AACCACCAGCAAGATCCCTCTCCAC
260 CTGGAAAAGAGAAAATGACCAACCACCAGAAAGATCTCTCCCCAC
* * ** *
16114 GTGGTAACATTGAAATTCCATCTTCTTTTCGGTTGCTTCACATCATTTCCGGATATATTACTCAT
1 GTGGTAACATTGAAATTCCATGTTCTCTTCGGTTATTTCACATCATTTCCGGATATATTATTCAT
* * * * * * *
16179 CTATTGGCCTTTCACACGCATTAACGGCTTCAAAGTCACGCAGAGCTTCCTAACAACTAATAAAA
66 TTATTGGCCCTTCACACACACTAACGACTTCAAAGCCACGTAGAGCTTCCTAACAACTAATAAAA
* * * *
16244 ATCAAGGATTCTAAATACGAGCATGTTAGGAGATTACAAGGCAATCAAAACATAC-AGCT-AAGG
131 ATCAAGGATTCTAAATACGAACAGGTTAGGTGATTCCAAGGCAATCAAAACATACGA-CTAAAGG
16307 GCAG-AC-GTTTCATACAAAT
195 GCAGCACAGTTTCATACAAAT
16326 GAAACGAACC
Statistics
Matches: 678, Mismatches: 109, Indels: 54
0.81 0.13 0.06
Matches are distributed among these distances:
297 102 0.15
298 105 0.15
299 18 0.03
300 122 0.18
301 63 0.09
302 184 0.27
303 79 0.12
304 5 0.01
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27
Consensus pattern (304 bp):
GTGGTAACATTGAAATTCCATGTTCTCTTCGGTTATTTCACATCATTTCCGGATATATTATTCAT
TTATTGGCCCTTCACACACACTAACGACTTCAAAGCCACGTAGAGCTTCCTAACAACTAATAAAA
ATCAAGGATTCTAAATACGAACAGGTTAGGTGATTCCAAGGCAATCAAAACATACGACTAAAGGG
CAGCACAGTTTCATACAAATAACGTTTAAAGATAGTAGTTACGATCTTTTAGGACACGAGTTTTC
TGGAAAAGAGAAAATGACCAACCACCAGAAAGATCTCTCCCCAC
Found at i:18382 original size:2 final size:2
Alignment explanation
Indices: 18375--18415 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
18365 GCAGAGCATT
18375 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18416 CAATAAAACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:18826 original size:20 final size:20
Alignment explanation
Indices: 18801--18893 Score: 96
Period size: 21 Copynumber: 4.5 Consensus size: 20
18791 TTTTCCCAAT
18801 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
18821 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGTAAA
18841 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGTAAA
* ** *
18862 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGTAAA
18883 TCGCAATGCGA
1 TCGCAATGCGA
18894 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:18843 original size:41 final size:41
Alignment explanation
Indices: 18798--18893 Score: 183
Period size: 41 Copynumber: 2.3 Consensus size: 41
18788 CGATTTTCCC
18798 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
18839 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
*
18880 AAATCGCAATGCGA
1 AATTCGCAATGCGA
18894 TACTGACTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.19
Consensus pattern (41 bp):
AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
Found at i:18847 original size:21 final size:20
Alignment explanation
Indices: 18801--18893 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
18791 TTTTCCCAAT
*
18801 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGGAAA
* **
18821 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGGAAA
*
18841 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGGAAA
* **
18862 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGG-AAA
18883 TCGCAATGCGA
1 TCGCAATGCGA
18894 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 29 0.50
21 29 0.50
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGGAAA
Found at i:18906 original size:41 final size:41
Alignment explanation
Indices: 18820--18954 Score: 123
Period size: 41 Copynumber: 3.3 Consensus size: 41
18810 GAATAAGTAA
* * *
18820 ATCGCAACGCGAATTGGGAAATTCGCAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
18861 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
18902 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
18943 TTCGCAACGCGA
1 ATCGCAACGCGA
18955 TACTGACTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
40 4 0.05
41 73 0.92
42 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:18907 original size:20 final size:20
Alignment explanation
Indices: 18882--18976 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
18872 AATTGGGAAA
*
18882 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
18902 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
18923 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
18943 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
18963 TTCGCAACGCGATA
1 ATCGCAACGCGATA
18977 ATACATAATC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.77
21 14 0.23
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:19192 original size:22 final size:22
Alignment explanation
Indices: 19164--19207 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
19154 CACTCTCTCA
19164 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
19186 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
19208 TATCTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:20848 original size:18 final size:18
Alignment explanation
Indices: 20827--20871 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
20817 TCCACTTCGG
*
20827 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
* *
20845 GAGCTATCACCTCACCTA
1 GAGCCATCACCTCACCCA
20863 GAGCCATCA
1 GAGCCATCA
20872 TCTGATCGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.42, G:0.16, T:0.16
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:21370 original size:20 final size:20
Alignment explanation
Indices: 21345--21397 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
21335 TAGTTTACTT
*
21345 TCGCAACACGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
* *
21365 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGAAAATGACTA
21385 TCGCAACGCGAAA
1 TCGCAACGCGAAA
21398 TGAAAATCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.38, C:0.26, G:0.23, T:0.13
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:21406 original size:19 final size:19
Alignment explanation
Indices: 21345--21414 Score: 77
Period size: 20 Copynumber: 3.6 Consensus size: 19
21335 TAGTTTACTT
*
21345 TCGCAACACGAAAATGACTA
1 TCGCAACGCG-AAATGACTA
*
21365 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGACTA
**
21385 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGACTA
*
21404 TCGCAATGCGA
1 TCGCAACGCGA
21415 TTTGTGTTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
19 17 0.40
20 25 0.58
21 1 0.02
ACGTcount: A:0.39, C:0.24, G:0.23, T:0.14
Consensus pattern (19 bp):
TCGCAACGCGAAATGACTA
Found at i:21492 original size:19 final size:19
Alignment explanation
Indices: 21470--21516 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
21460 TTGCGATTTT
21470 CATTTCGCATTACGATAGC
1 CATTTCGCATTACGATAGC
* * *
21489 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCATTACGATAGC
21509 CATTTCGC
1 CATTTCGC
21517 GTTGCGATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (19 bp):
CATTTCGCATTACGATAGC
Found at i:21519 original size:19 final size:19
Alignment explanation
Indices: 21421--21524 Score: 87
Period size: 19 Copynumber: 5.7 Consensus size: 19
21411 GCGATTTGTG
*
21421 TTTCGCGTTGCGAT-TTCA
1 TTTCGCGTTGCGATAGTCA
21439 TTTCGCGTTGCG--A-T--
1 TTTCGCGTTGCGATAGTCA
**
21453 TTT-GTCGTTGCGATTTTCA
1 TTTCG-CGTTGCGATAGTCA
* * *
21472 TTTCGCATTACGATAGCCA
1 TTTCGCGTTGCGATAGTCA
21491 TTTCCGCGTTGCGATAGTCA
1 TTT-CGCGTTGCGATAGTCA
21511 TTTCGCGTTGCGAT
1 TTTCGCGTTGCGAT
21525 TTTAAGTTTC
Statistics
Matches: 68, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
13 1 0.01
14 10 0.15
16 1 0.01
17 1 0.01
18 12 0.18
19 26 0.38
20 17 0.25
ACGTcount: A:0.13, C:0.22, G:0.23, T:0.41
Consensus pattern (19 bp):
TTTCGCGTTGCGATAGTCA
Found at i:24134 original size:24 final size:24
Alignment explanation
Indices: 24078--24136 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
24068 AGTCAGTATT
* *
24078 CGAAATTTGATCTTGGTCAATACC
1 CGAAATTTGATATTGGTCAATACA
* *
24102 CGGACTTTGATATTGGTCAATACA
1 CGAAATTTGATATTGGTCAATACA
*
24126 CGAATTTTGAT
1 CGAAATTTGAT
24137 GATGTTTCAG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (24 bp):
CGAAATTTGATATTGGTCAATACA
Found at i:24328 original size:12 final size:12
Alignment explanation
Indices: 24311--24335 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24301 ATATAATCCT
24311 GAAGAAGAAAAA
1 GAAGAAGAAAAA
24323 GAAGAAGAAAAA
1 GAAGAAGAAAAA
24335 G
1 G
24336 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:26652 original size:19 final size:19
Alignment explanation
Indices: 26630--26727 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
26620 GGAAATTACT
26630 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
26649 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
26663 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
26682 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
26696 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
26715 ATCGCAACGCGAA
1 ATCGCAATGCGAA
26728 TTTAATTTCG
Statistics
Matches: 62, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
14 19 0.31
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 31 0.50
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.12
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:26672 original size:33 final size:33
Alignment explanation
Indices: 26630--26723 Score: 179
Period size: 33 Copynumber: 2.8 Consensus size: 33
26620 GGAAATTACT
26630 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
26663 ATCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
26696 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
26724 CGAATTTAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 60 1.00
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:26745 original size:19 final size:20
Alignment explanation
Indices: 26723--26765 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
26713 AAATCGCAAC
26723 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* *
26742 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
26762 GCGA
1 GCGA
26766 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:26750 original size:14 final size:14
Alignment explanation
Indices: 26751--26784 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26741 TGCGATTTTC
26751 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
* *
26765 ATTCTCTCGTTGCG
1 ATTTTCGCGTTGCG
26779 ATTTTC
1 ATTTTC
26785 ATTGCGCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:26925 original size:14 final size:14
Alignment explanation
Indices: 26906--26942 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
26896 CATCAATTAA
26906 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
26920 ACAAATCACCTTTT
1 ACAAATCAACTTTT
26934 ACAAATCAA
1 ACAAATCAA
26943 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:28366 original size:21 final size:21
Alignment explanation
Indices: 28300--28366 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
28290 GTGAATCGGG
*
28300 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
28320 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
28342 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
28363 CTCT
1 CTCT
28367 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:28385 original size:42 final size:41
Alignment explanation
Indices: 28300--28422 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
28290 GTGAATCGGG
* * * * *
28300 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGATAGGGGC
28342 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGATAGGGGC
* * * * *
28384 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGATAGG
28423 CGAGTCGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.06
42 58 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGGGGC
Found at i:30453 original size:20 final size:19
Alignment explanation
Indices: 30422--30601 Score: 119
Period size: 19 Copynumber: 9.8 Consensus size: 19
30412 TCTTTTGGTT
30422 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
30441 GATAATGAGAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
30462 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
30481 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
**
30495 GAAATGACTATCG---CGA
1 GAAATGAAAATCGCAACGA
** * *
30511 -CCA-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGA
* *
30528 GAAATTAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGA
* *
30548 GAAATTAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
30567 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
30586 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
30602 TGCGATTTTG
Statistics
Matches: 130, Mismatches: 18, Indels: 26
0.75 0.10 0.15
Matches are distributed among these distances:
14 17 0.13
15 1 0.01
16 4 0.03
17 4 0.03
18 1 0.01
19 53 0.41
20 48 0.37
21 2 0.02
ACGTcount: A:0.44, C:0.22, G:0.21, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:30539 original size:19 final size:19
Alignment explanation
Indices: 30517--30606 Score: 144
Period size: 19 Copynumber: 4.7 Consensus size: 19
30507 GCGACCAGAC
*
30517 AATCGCAACGCGAAATTAA
1 AATCGCAACGCGAAATGAA
*
30536 AATCGCAACCGCGAAATTAA
1 AATCGCAA-CGCGAAATGAA
30556 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
30575 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
30594 AATCGCAATGCGA
1 AATCGCAACGCGA
30607 TTTTGGTTTC
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
19 49 0.72
20 19 0.28
ACGTcount: A:0.46, C:0.22, G:0.19, T:0.13
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:30560 original size:39 final size:38
Alignment explanation
Indices: 30422--30606 Score: 165
Period size: 33 Copynumber: 5.1 Consensus size: 38
30412 TCTTTTGGTT
* *
30422 GAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGCGA-AATGAAAATCGCAACGC
** *
30461 GGAAATGACTATCGCAA--CG--A-GAGAATCGCAACGC
1 -GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
** * *
30495 GAAATGACTATCGCGAC-C---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
* *
30528 GAAATTAAAATCGCAACCGCGAAATTAAAATCGCAACGC
1 GAAATGAAAATCGCAA-CGCGAAATGAAAATCGCAACGC
*
30567 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
30605 GA
1 GA
30607 TTTTGGTTTC
Statistics
Matches: 124, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
33 41 0.33
34 16 0.13
35 2 0.02
38 24 0.19
39 27 0.22
40 14 0.11
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.13
Consensus pattern (38 bp):
GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
Found at i:30635 original size:19 final size:19
Alignment explanation
Indices: 30602--30646 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
30592 AAAATCGCAA
*
30602 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGATTTCGCGT
*
30621 TGCGATTTTTATTTCGCGT
1 TGCGATTTTGATTTCGCGT
30640 TGCGATT
1 TGCGATT
30647 ATCTCGTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.09, C:0.16, G:0.27, T:0.49
Consensus pattern (19 bp):
TGCGATTTTGATTTCGCGT
Found at i:31285 original size:20 final size:20
Alignment explanation
Indices: 31200--31293 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 20
31190 CGCTATGTAA
*
31200 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
* * *
31220 ATCGTGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTCAGT
* ** * *
31240 ATCTCGTTGCGATTTTTTATT
1 ATCGCGTTGCGA-TAGTCAGT
*
31261 ATCGCATTGCGATAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
*
31281 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
31294 TTCCCCAATT
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
20 45 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGT
Found at i:31312 original size:41 final size:41
Alignment explanation
Indices: 31282--31377 Score: 140
Period size: 41 Copynumber: 2.3 Consensus size: 41
31272 ATAGTCAGTA
* *
31282 TCGCATTGCG-ATTTCCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTT-CCCAATTCGCGTTGCGATTCACGTAT
* *
31323 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
31364 TCGCATTGCGAATT
1 TCGCATTGCGAATT
31378 GGGAAAATCG
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
41 50 0.93
42 4 0.07
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.39
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
Found at i:31326 original size:20 final size:20
Alignment explanation
Indices: 31282--31374 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
31272 ATAGTCAGTA
* **
31282 TCGCATTGCGATTTCCCCAAT
1 TCGCATTGCGATTT-ACTTAT
*
31303 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
31323 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTTAT
*
31344 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
31364 TCGCATTGCGA
1 TCGCATTGCGA
31375 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 29 0.50
21 29 0.50
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:43803 original size:2 final size:2
Alignment explanation
Indices: 43796--43825 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
43786 CAATTTTCTC
43796 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
43826 TGCAAAAAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45319 original size:73 final size:73
Alignment explanation
Indices: 45193--45337 Score: 263
Period size: 73 Copynumber: 2.0 Consensus size: 73
45183 GACCAAATTA
*
45193 AATAAATTGAAAAGTGAAGGAATTAATTAAAAGATGTTGGTGTAGGATAAATTAATAAGTGAATG
1 AATAAATTGAAAAGTGAAGGAATTAATTAAAAGATGTTGGTGTAAGATAAATTAATAAGTGAATG
45258 AGAAGTAG
66 AGAAGTAG
* *
45266 AATAAATTGAAAAGTGAATGAATTAATTAAAAGATGTTGGTGTAAGATGAATTAATAAGTGAATG
1 AATAAATTGAAAAGTGAAGGAATTAATTAAAAGATGTTGGTGTAAGATAAATTAATAAGTGAATG
45331 AGAAGTA
66 AGAAGTA
45338 AAAGGGTAAA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.48, C:0.00, G:0.23, T:0.28
Consensus pattern (73 bp):
AATAAATTGAAAAGTGAAGGAATTAATTAAAAGATGTTGGTGTAAGATAAATTAATAAGTGAATG
AGAAGTAG
Found at i:53751 original size:36 final size:35
Alignment explanation
Indices: 53711--53785 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
53701 ATCGAATTAA
* *
53711 ACGGAGACGAGAGAAAATCGTTTATGCTAAACGGGG
1 ACGGAGAC-AGAGAAAACCATTTATGCTAAACGGGG
* * *
53747 ACGGAGACAGGGGAAACCATTTATGCTAAACGGTG
1 ACGGAGACAGAGAAAACCATTTATGCTAAACGGGG
53782 ACGG
1 ACGG
53786 GATGGTAATC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 26 0.76
36 8 0.24
ACGTcount: A:0.35, C:0.16, G:0.33, T:0.16
Consensus pattern (35 bp):
ACGGAGACAGAGAAAACCATTTATGCTAAACGGGG
Found at i:54081 original size:21 final size:21
Alignment explanation
Indices: 54055--54098 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
54045 AGAGACATCC
* *
54055 ATTTTATATATAATATTTATAT
1 ATTTAATATA-AATATATATAT
*
54077 ATTTAATTTAAATATATATAT
1 ATTTAATATAAATATATATAT
54098 A
1 A
54099 CCCGGCCCGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTTAATATAAATATATATAT
Found at i:55524 original size:20 final size:21
Alignment explanation
Indices: 55499--55538 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
55489 TTTGTTTACT
55499 GTTGAATG-GAACCATTCAGC
1 GTTGAATGCGAACCATTCAGC
55519 GTTGAATGCTGAACCATTCA
1 GTTGAATGC-GAACCATTCA
55539 ACATTAAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
22 10 0.56
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (21 bp):
GTTGAATGCGAACCATTCAGC
Found at i:55605 original size:23 final size:23
Alignment explanation
Indices: 55579--55634 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
55569 ATGAAGACTA
*
55579 TGCTGAATGAAACATCAAAACAC
1 TGCTGAATGAAACAGCAAAACAC
*
55602 TGCTGAATGAAACAGCAACACAC
1 TGCTGAATGAAACAGCAAAACAC
55625 TGCTGAATGA
1 TGCTGAATGA
55635 TTCAACATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.18
Consensus pattern (23 bp):
TGCTGAATGAAACAGCAAAACAC
Found at i:62083 original size:12 final size:12
Alignment explanation
Indices: 62066--62112 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
62056 ATATATGTTC
62066 ATGTGATATGAT
1 ATGTGATATGAT
62078 ATGTGATATGAT
1 ATGTGATATGAT
*
62090 ATGTGATATGAC
1 ATGTGATATGAT
*
62102 ATGTAATATGA
1 ATGTGATATGA
62113 GAACATGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.36, C:0.02, G:0.23, T:0.38
Consensus pattern (12 bp):
ATGTGATATGAT
Found at i:62274 original size:15 final size:15
Alignment explanation
Indices: 62256--62302 Score: 85
Period size: 15 Copynumber: 3.1 Consensus size: 15
62246 GAGGGTATAA
62256 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
*
62271 TAGTCCTTTGGGATG
1 TAGTCCTTCGGGATG
62286 TAGTCCTTCGGGATG
1 TAGTCCTTCGGGATG
62301 TA
1 TA
62303 ATGGTCCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.15, C:0.17, G:0.32, T:0.36
Consensus pattern (15 bp):
TAGTCCTTCGGGATG
Found at i:62316 original size:33 final size:30
Alignment explanation
Indices: 62256--62316 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 30
62246 GAGGGTATAA
*
62256 TAGTCCTTCGGGATGTAGTCCTTTGGGATG
1 TAGTCCTTCGGGATGTAGTCCTATGGGATG
62286 TAGTCCTTCGGGATGTAATGGTCCTATGGGA
1 TAGTCCTTCGGGATGT-A--GTCCTATGGGA
62317 CATAGATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 16 0.59
31 1 0.04
33 10 0.37
ACGTcount: A:0.16, C:0.16, G:0.33, T:0.34
Consensus pattern (30 bp):
TAGTCCTTCGGGATGTAGTCCTATGGGATG
Done.