Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008684.1 Hibiscus syriacus cultivar Beakdansim tig00111706_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84147

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5975--6198
64
3.5
63
80
7
197
32
20
20
26
1.97
6508--6554
12
3.9
12
94
0
76
36
2
23
38
1.67
6699--6745
15
3.1
15
100
0
94
14
19
31
34
1.92
8052--8124
20
3.8
18
75
13
56
34
19
15
31
1.92
13342--13382
21
1.9
22
90
5
66
48
2
2
46
1.28
22877--22934
28
2.1
28
100
0
116
20
15
17
46
1.84
27107--27182
30
2.5
30
80
4
91
27
26
10
35
1.89
27487--28675
601
2.0
601
96
0
2182
30
16
17
35
1.92
29688--29760
31
2.4
31
83
0
83
41
16
17
24
1.90
36857--37078
6
37.0
6
100
0
444
33
0
16
50
1.46
37838--37880
16
2.7
16
100
0
86
32
18
11
37
1.87
46054--46101
21
2.3
21
88
0
69
33
31
18
16
1.94
46270--46306
6
6.5
6
96
3
60
0
16
54
29
1.43
46380--46451
21
3.4
21
92
0
117
45
16
16
20
1.85
53059--53126
3
22.3
3
90
3
109
38
0
0
61
0.96
55107--55350
130
1.9
130
84
4
330
40
8
6
44
1.59
55870--55915
22
2.1
22
84
8
58
58
8
10
21
1.58
56204--56322
37
3.2
37
88
8
156
61
0
0
37
1.02
56953--57114
30
5.4
30
94
0
279
32
22
19
25
1.97
56953--57140
90
2.1
91
87
3
272
34
22
19
23
1.97
57101--57193
31
3.0
31
80
3
89
35
20
17
26
1.94
57371--57954
4
147.5
4
97
2
1126
50
25
0
24
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58809--58846
20
1.9
20
88
0
58
10
31
34
23
1.89
58874--58916
21
2.0
21
81
0
50
16
25
30
27
1.97
60592--60674
29
2.8
29
94
1
148
40
13
14
31
1.84
65351--65433
29
2.8
29
90
1
139
42
12
14
31
1.82
73242--73267
2
13.0
2
100
0
52
50
0
0
50
1.00
74323--74363
19
2.2
19
86
8
57
36
2
0
60
1.10
74898--74942
21
2.1
21
87
0
63
71
4
22
2
1.15
76146--76202
29
2.0
29
89
6
89
22
14
0
63
1.30
76153--76222
29
2.4
29
80
4
79
22
11
2
62
1.41

Tables:   1

The End!