genome.fa.s8686.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008686.1 Hibiscus syriacus cultivar Beakdansim tig00111710_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137094

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9868--10108	39	6.2	39	84	2	315	28	25	12	33	1.93
10412--10517	53	2.0	53	100	0	212	43	18	11	26	1.84
12265--12747	242	2.0	243	94	1	842	42	16	18	22	1.89
13931--13973	22	2.0	21	90	4	68	32	23	11	32	1.90
20813--20863	23	2.2	23	96	0	93	33	13	17	35	1.89
20874--20929	26	2.2	26	90	0	85	33	10	17	37	1.85
20882--20933	26	2.0	26	96	0	95	32	11	19	36	1.87
25918--25967	24	2.1	24	96	0	91	44	4	14	38	1.63
27065--27089	12	2.1	12	100	0	50	44	8	8	40	1.63
27024--27193	35	4.9	35	79	14	194	43	5	7	43	1.56
27102--27126	11	2.3	11	100	0	50	40	8	8	44	1.63
27024--27210	68	2.7	71	84	9	228	42	5	7	44	1.57
27275--27309	3	11.3	3	93	6	61	31	0	0	68	0.90
31597--31646	24	2.1	24	96	0	91	44	4	14	38	1.63
32699--32869	35	4.9	34	78	15	165	43	5	7	43	1.55
32740--32764	12	2.1	12	100	0	50	44	8	8	40	1.63
32777--32801	11	2.3	11	100	0	50	40	8	8	44	1.63
32702--32880	69	2.6	69	83	9	197	42	6	7	44	1.57
32949--32979	3	10.3	3	100	0	62	32	0	0	67	0.91
38834--39649	166	5.0	163	95	1	1301	29	26	20	23	1.99
40356--40528	34	4.9	34	78	15	176	43	5	6	43	1.55
40397--40421	12	2.1	12	100	0	50	44	8	8	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40434--40458	11	2.3	11	100	0	50	40	8	8	44	1.63
40356--40545	71	2.7	74	84	9	231	42	5	7	44	1.56
40356--40575	71	3.1	70	79	12	175	44	5	7	43	1.55
40613--40638	3	8.7	3	100	0	52	30	0	0	69	0.89
44589--44621	2	16.5	2	93	0	57	51	3	0	45	1.16
45784--45837	20	2.7	20	94	0	90	11	18	18	51	1.74
48909--48939	13	2.4	13	100	0	62	0	6	0	93	0.35
51369--51665	148	2.0	148	100	0	594	28	16	25	28	1.97
53349--53576	123	1.9	122	84	4	307	44	7	17	30	1.77
60765--60791	12	2.2	12	100	0	54	77	7	0	14	0.97
69386--69419	16	2.2	15	94	5	59	23	5	23	47	1.73
72277--72344	30	2.3	30	92	0	109	20	38	16	25	1.92
72292--72378	30	2.9	29	82	3	84	22	40	12	24	1.89
75014--75047	16	2.2	15	94	5	59	23	5	23	47	1.73
77889--77941	27	2.0	27	81	7	63	26	3	9	60	1.45
78851--78884	18	1.9	18	94	5	61	26	32	29	11	1.92
90586--90610	13	1.9	13	100	0	50	32	8	0	60	1.26
90609--90639	15	2.1	15	93	0	53	61	0	0	38	0.96
93695--93719	12	2.1	12	100	0	50	44	16	0	40	1.47
102662--102697	2	18.0	2	100	0	72	50	0	0	50	1.00
105814--105848	12	2.9	12	86	0	52	45	5	34	14	1.68
105812--105853	18	2.3	18	91	0	66	42	4	33	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108637--108676	21	1.9	21	90	10	64	55	0	0	45	0.99
109984--110025	14	3.0	14	85	0	57	30	0	23	45	1.53
110348--110384	16	2.2	18	85	9	51	62	0	0	37	0.96
110783--110823	16	2.6	16	88	3	57	36	12	21	29	1.90
114116--114185	35	2.0	35	85	0	95	31	17	15	35	1.91
116378--116441	12	5.4	12	79	3	58	14	12	45	28	1.81
116378--116421	12	3.8	12	90	3	63	11	9	47	31	1.71
116376--116441	23	2.8	24	81	9	82	13	13	45	27	1.81
116898--116935	2	19.0	2	94	0	67	47	0	2	50	1.15
123195--123240	19	2.3	20	81	7	58	28	30	15	26	1.96
123326--123392	20	3.3	20	77	4	80	41	16	23	17	1.89
123336--123411	21	3.7	21	76	3	91	40	17	25	17	1.90
123322--123411	41	2.2	41	97	0	171	41	16	24	17	1.90
123400--123494	20	4.7	20	77	5	82	34	24	17	23	1.96
124047--124091	19	2.4	19	92	0	72	48	26	15	8	1.74
124087--124232	19	8.1	19	71	17	105	13	23	21	42	1.87
124120--124207	33	2.6	33	90	1	131	12	25	23	38	1.90
124186--124232	20	2.3	20	79	13	60	12	25	14	46	1.80
126270--126336	21	3.2	21	66	6	55	23	35	20	19	1.95
126214--126336	42	2.9	42	80	4	106	22	36	17	23	1.94
127696--127731	14	2.6	14	95	0	63	30	0	25	44	1.54
127910--128060	19	8.7	19	64	21	80	15	22	20	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127914--128040	33	3.9	32	87	8	193	14	22	19	42	1.88
127907--128039	66	2.0	66	97	0	248	16	22	19	41	1.90
130328--130352	12	2.1	12	100	0	50	0	28	0	72	0.86
130527--130580	24	2.2	24	90	0	81	38	20	16	24	1.92
131634--131691	20	2.9	20	94	0	98	37	22	22	17	1.93
131710--131777	19	3.8	19	83	12	92	14	22	16	47	1.82
133770--133835	19	3.4	19	83	4	87	37	24	22	15	1.92
133817--133886	31	2.2	33	89	5	108	50	22	18	8	1.74
133896--133988	32	2.8	33	90	3	143	15	18	19	47	1.83
133974--134016	20	2.2	20	87	4	61	18	23	20	37	1.94
133982--134027	20	2.3	20	88	0	65	15	21	26	36	1.93
135839--135876	20	1.9	20	88	0	58	50	21	15	13	1.78
136140--136183	22	2.0	22	95	0	79	18	15	45	20	1.85
136371--136423	20	2.7	20	93	0	88	24	18	28	28	1.98
136391--136468	41	1.9	41	84	5	104	23	16	20	39	1.92
136449--136546	20	4.7	21	78	5	101	19	24	17	38	1.92
136454--136546	41	2.3	41	100	0	150	17	24	18	39	1.91

Tables:   1

The End!